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      "text/plain": [
       "<Figure size 432x288 with 1 Axes>"
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      "needs_background": "light"
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     "output_type": "display_data"
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   "source": [
    "# plt.scatter(*pca.transform(XX).T, c=y, s=5, cmap='bwr')\n",
    "X_pca = pca.transform(XX)\n",
    "for i in range(k):\n",
    "    plt.scatter(*X_pca[pred == i].T, c=[plt.get_cmap(\"tab10\")(i)], s=5, \n",
    "                label='Cluster {}, negative cases: {:.1%}'.format(i+1, purities[i]))\n",
    "\n",
    "# plt.scatter(*X_pca.T, c=[plt.get_cmap(\"tab10\")(ci) for ci in pred], s=5)\n",
    "\n",
    "# Mark negative cases with lighter color\n",
    "plt.scatter(*X_pca.T, c=[{0: '#ffffff88', 1: '#00000000'}[yi] for yi in y], s=5)\n",
    "\n",
    "plt.xlabel('First principle component')\n",
    "plt.ylabel('Second principle component')\n",
    "plt.legend(fontsize=8)\n",
    "plt.axis('square')\n",
    "plt.savefig('fig/cluster.svg', bbox_inches='tight')\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Visualize time series"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 316,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pickle\n",
    "ts_vitals_by_bmt = pickle.load(open(data_dir + 'features/ts_vitals_by_bmt_2014_2017_MiChart.p', 'rb'))\n",
    "ts_vitals_by_bmt = {ID: ts_vitals_by_bmt[ID] for ID in list(pop.index)}\n",
    "split_idx = len(ts_vitals_by_bmt)-85\n",
    "\n",
    "clf = load('data/model_combined.joblib')\n",
    "y_prob = clf.predict_proba(Xte)[:,1]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 310,
   "metadata": {},
   "outputs": [],
   "source": [
    "imax, imin = y_prob.argmax(), y_prob.argmin()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 325,
   "metadata": {},
   "outputs": [],
   "source": [
    "ID_max = pop.index[split_idx+imax]\n",
    "ts_imax = ts_vitals_by_bmt[ID_max]\n",
    "ID_min = pop.index[split_idx+imin]\n",
    "ts_imin = ts_vitals_by_bmt[ID_min]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 327,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(201708006, 201711007)"
      ]
     },
     "execution_count": 327,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ID_max, ID_min"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 361,
   "metadata": {},
   "outputs": [
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