diff --git a/.gitignore b/.gitignore
index 8961ce21f170309bae02d0b72ada31aa5ec7235a..ec34b920c62338335146d60ed112e9c5115c65e9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -45,6 +45,20 @@ Builds/VisualStudio2012/open-ephys.vcxproj.user
Builds/VisualStudio2012/windowState.xml
Builds/VisualStudio2012/pipetest.bit
+Builds/VisualStudio2013/Debug
+Builds/VisualStudio2013/Release
+Builds/VisualStudio2013/Debug64
+Builds/VisualStudio2013/Release64
+Builds/VisualStudio2013/x64
+Builds/VisualStudio2013/ipch
+Builds/VisualStudio2013/open-ephys.sdf
+Builds/VisualStudio2013/open-ephys.opensdf
+Builds/VisualStudio2013/open-ephys.suo
+Builds/VisualStudio2013/open-ephys.v11.suo
+Builds/VisualStudio2013/open-ephys.vcxproj.user
+Builds/VisualStudio2013/windowState.xml
+Builds/VisualStudio2013/pipetest.bit
+
Builds/VisualStudio2010/Debug
Builds/VisualStudio2010/Release
Builds/VisualStudio2010/ipch
diff --git a/Builds/Linux/Makefile b/Builds/Linux/Makefile
index efe7e5bda398f1d4a8ec5b3569e132f88aef73eb..ddb257dede2b362df391be32f65510ef09ac27df 100644
--- a/Builds/Linux/Makefile
+++ b/Builds/Linux/Makefile
@@ -1,30 +1,32 @@
# Automatically generated makefile, created by the Introjucer
# Don't edit this file! Your changes will be overwritten when you re-save the Introjucer project!
+# (this disables dependency generation if multiple architectures are set)
+DEPFLAGS := $(if $(word 2, $(TARGET_ARCH)), , -MMD)
+
ifndef CONFIG
CONFIG=Debug
endif
-ifeq ($(TARGET_ARCH),)
- TARGET_ARCH := -march=native
-endif
-
-# (this disables dependency generation if multiple architectures are set)
-DEPFLAGS := $(if $(word 2, $(TARGET_ARCH)), , -MMD)
-
ifeq ($(CONFIG),Debug)
BINDIR := build
LIBDIR := build
OBJDIR := build/intermediate/Debug
OUTDIR := build
- CPPFLAGS := $(DEPFLAGS) -D "LINUX=1" -D "DEBUG=1" -D "_DEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode
- CFLAGS += $(CPPFLAGS) $(TARGET_ARCH) -g -ggdb -O3
- CXXFLAGS += $(CFLAGS) -export-dynamic -g -pg -std=c++0x
- LDFLAGS += -L$(BINDIR) -L$(LIBDIR) -L/usr/X11R6/lib/ -L/usr/local/include -lGL -lX11 -lXext -lXinerama -lasound -ldl -lfreetype -lpthread -lrt -pg -ldl -lXext -lGLU
+
+ ifeq ($(TARGET_ARCH),)
+ TARGET_ARCH := -march=native
+ endif
+
+ CPPFLAGS := $(DEPFLAGS) -D "LINUX=1" -D "DEBUG=1" -D "_DEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -D "JUCE_APP_VERSION=0.3.2" -D "JUCE_APP_VERSION_HEX=0x302" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode -I ../../JuceLibraryCode/modules
+ CFLAGS += $(CPPFLAGS) $(TARGET_ARCH) -g -ggdb -O3 -export-dynamic -g -pg -std=c++0x
+ CXXFLAGS += $(CFLAGS)
+ LDFLAGS += $(TARGET_ARCH) -L$(BINDIR) -L$(LIBDIR) -L/usr/X11R6/lib/ -L/usr/local/include -lGL -lX11 -lXext -lXinerama -lasound -ldl -lfreetype -lpthread -lrt -pg -ldl -lXext -lGLU -lhdf5 -lhdf5_cpp
LDDEPS :=
- RESFLAGS := -D "LINUX=1" -D "DEBUG=1" -D "_DEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode
+ RESFLAGS := -D "LINUX=1" -D "DEBUG=1" -D "_DEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -D "JUCE_APP_VERSION=0.3.2" -D "JUCE_APP_VERSION_HEX=0x302" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode -I ../../JuceLibraryCode/modules
TARGET := open-ephys
BLDCMD = $(CXX) -o $(OUTDIR)/$(TARGET) $(OBJECTS) $(LDFLAGS) $(RESOURCES) $(TARGET_ARCH)
+ CLEANCMD = rm -rf $(OUTDIR)/$(TARGET) $(OBJDIR)
endif
ifeq ($(CONFIG),Release)
@@ -32,94 +34,37 @@ ifeq ($(CONFIG),Release)
LIBDIR := build
OBJDIR := build/intermediate/Release
OUTDIR := build
- CPPFLAGS := $(DEPFLAGS) -D "LINUX=1" -D "NDEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode
- CFLAGS += $(CPPFLAGS) $(TARGET_ARCH) -O3
- CXXFLAGS += $(CFLAGS) -export-dynamic -g -pg -std=c++0x
- LDFLAGS += -L$(BINDIR) -L$(LIBDIR) -L/usr/X11R6/lib/ -lGL -lX11 -lXext -lXinerama -lasound -ldl -lfreetype -lpthread -lrt -pg -ldl -lXext -lGLU
+
+ ifeq ($(TARGET_ARCH),)
+ TARGET_ARCH := -march=native
+ endif
+
+ CPPFLAGS := $(DEPFLAGS) -D "LINUX=1" -D "NDEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -D "JUCE_APP_VERSION=0.3.2" -D "JUCE_APP_VERSION_HEX=0x302" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode -I ../../JuceLibraryCode/modules
+ CFLAGS += $(CPPFLAGS) $(TARGET_ARCH) -O3 -export-dynamic -g -pg -std=c++0x
+ CXXFLAGS += $(CFLAGS)
+ LDFLAGS += $(TARGET_ARCH) -L$(BINDIR) -L$(LIBDIR) -fvisibility=hidden -L/usr/X11R6/lib/ -lGL -lX11 -lXext -lXinerama -lasound -ldl -lfreetype -lpthread -lrt -pg -ldl -lXext -lGLU -lhdf5 -lhdf5_cpp
LDDEPS :=
- RESFLAGS := -D "LINUX=1" -D "NDEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode
+ RESFLAGS := -D "LINUX=1" -D "NDEBUG=1" -D "JUCER_LINUX_MAKE_7346DA2A=1" -D "JUCE_APP_VERSION=0.3.2" -D "JUCE_APP_VERSION_HEX=0x302" -I /usr/include -I /usr/include/freetype2 -I ../../JuceLibraryCode -I ../../JuceLibraryCode/modules
TARGET := open-ephys-release
BLDCMD = $(CXX) -o $(OUTDIR)/$(TARGET) $(OBJECTS) $(LDFLAGS) $(RESOURCES) $(TARGET_ARCH)
+ CLEANCMD = rm -rf $(OUTDIR)/$(TARGET) $(OBJDIR)
endif
OBJECTS := \
$(OBJDIR)/AccessClass_de9602d5.o \
$(OBJDIR)/PracticalSocket_2574ecc8.o \
- $(OBJDIR)/Bessel_63b88b81.o \
- $(OBJDIR)/Biquad_479045c5.o \
- $(OBJDIR)/Butterworth_a752fb81.o \
- $(OBJDIR)/Cascade_7ab417a7.o \
- $(OBJDIR)/ChebyshevI_f2af4063.o \
- $(OBJDIR)/ChebyshevII_649cfe90.o \
- $(OBJDIR)/Custom_e24db5a8.o \
- $(OBJDIR)/Design_3ed2fd75.o \
- $(OBJDIR)/Documentation_c5f0da2d.o \
- $(OBJDIR)/Elliptic_8ad9a5b9.o \
- $(OBJDIR)/Filter_e4029a2f.o \
- $(OBJDIR)/Legendre_89451537.o \
- $(OBJDIR)/Param_13628c80.o \
- $(OBJDIR)/PoleFilter_e04f707.o \
- $(OBJDIR)/RBJ_418b612d.o \
- $(OBJDIR)/RootFinder_239a995f.o \
- $(OBJDIR)/State_22979684.o \
$(OBJDIR)/AudioComponent_521bd9c9.o \
- $(OBJDIR)/SerialInput_855a46b1.o \
- $(OBJDIR)/FileReader_18023b0e.o \
- $(OBJDIR)/ChannelMappingNode_d9219b9c.o \
- $(OBJDIR)/PulsePalOutput_9f4ef492.o \
- $(OBJDIR)/ReferenceNode_519d3b68.o \
- $(OBJDIR)/PhaseDetector_7193f7dc.o \
- $(OBJDIR)/AudioResamplingNode_3dbffa2d.o \
- $(OBJDIR)/Channel_33a3e5fe.o \
- $(OBJDIR)/PulsePal_14932a18.o \
- $(OBJDIR)/ofArduino_12f202a5.o \
- $(OBJDIR)/ofSerial_c3b0a9e1.o \
- $(OBJDIR)/EventDetector_4807aa7b.o \
- $(OBJDIR)/FPGAOutput_73b5ffd4.o \
- $(OBJDIR)/ArduinoOutput_391e90c4.o \
- $(OBJDIR)/Parameter_ae008024.o \
- $(OBJDIR)/SpikeDisplayNode_9c52e4ad.o \
- $(OBJDIR)/WiFiOutput_fa464ec5.o \
- $(OBJDIR)/LfpDisplayNode_30ef22fd.o \
- $(OBJDIR)/RecordControl_3e1c6062.o \
- $(OBJDIR)/Merger_2f90542e.o \
- $(OBJDIR)/Splitter_6e27a57b.o \
- $(OBJDIR)/SpikeObject_24e8c655.o \
- $(OBJDIR)/SpikeDisplayCanvas_b208ff6e.o \
- $(OBJDIR)/DataWindow_83ce6754.o \
- $(OBJDIR)/LfpDisplayCanvas_4a58e87e.o \
- $(OBJDIR)/SpikeDetector_300d85e7.o \
- $(OBJDIR)/AudioNode_94606ff3.o \
- $(OBJDIR)/EventNode_95c842b7.o \
- $(OBJDIR)/LfpTriggeredAverageEditor_101d75b.o \
- $(OBJDIR)/SerialInputEditor_c00f31f5.o \
- $(OBJDIR)/ElectrodeButtons_a6064cc.o \
- $(OBJDIR)/ChannelMappingEditor_dd803b0.o \
- $(OBJDIR)/FileReaderEditor_16fd7744.o \
- $(OBJDIR)/PhaseDetectorEditor_f53aa520.o \
- $(OBJDIR)/PulsePalOutputEditor_ab5be148.o \
- $(OBJDIR)/RHD2000Editor_d7ddd6b.o \
- $(OBJDIR)/RecordControlEditor_244084cb.o \
- $(OBJDIR)/ReferenceNodeEditor_19ee0fac.o \
- $(OBJDIR)/ResamplingNodeEditor_f2d6f061.o \
- $(OBJDIR)/FPGAOutputEditor_cfe00f8a.o \
- $(OBJDIR)/ArduinoOutputEditor_1118f008.o \
- $(OBJDIR)/ChannelSelector_c1430874.o \
- $(OBJDIR)/ParameterEditor_91f62ae8.o \
- $(OBJDIR)/SpikeDisplayEditor_e1812c1.o \
- $(OBJDIR)/VisualizerEditor_3672b003.o \
- $(OBJDIR)/MergerEditor_d1fcc0df.o \
- $(OBJDIR)/ImageIcon_c89b23a6.o \
- $(OBJDIR)/WiFiOutputEditor_1d3ba5bb.o \
- $(OBJDIR)/EventNodeEditor_2198733b.o \
- $(OBJDIR)/SignalGeneratorEditor_3223ac0a.o \
- $(OBJDIR)/LfpDisplayEditor_99d75351.o \
- $(OBJDIR)/SourceNodeEditor_8d813122.o \
- $(OBJDIR)/SplitterEditor_c2199b6c.o \
- $(OBJDIR)/SpikeDetectorEditor_2fb63eeb.o \
- $(OBJDIR)/AudioEditor_fb2c6555.o \
- $(OBJDIR)/FilterEditor_dfe1f39d.o \
- $(OBJDIR)/GenericEditor_becb2ad6.o \
+ $(OBJDIR)/ArduinoOutput_d5a968de.o \
+ $(OBJDIR)/ArduinoOutputEditor_e1b7e52b.o \
+ $(OBJDIR)/AudioEditor_3931be27.o \
+ $(OBJDIR)/AudioNode_3db3557c.o \
+ $(OBJDIR)/AudioResamplingNode_bdba71b0.o \
+ $(OBJDIR)/Channel_5cb2d4d2.o \
+ $(OBJDIR)/ChannelMappingEditor_9b145f15.o \
+ $(OBJDIR)/ChannelMappingNode_ec0559ea.o \
+ $(OBJDIR)/EcubeEditor_ba242592.o \
+ $(OBJDIR)/RHD2000Editor_dbd5a24.o \
+ $(OBJDIR)/EcubeThread_d0477baf.o \
$(OBJDIR)/okFrontPanelDLL_87687880.o \
$(OBJDIR)/rhd2000datablock_722d8dae.o \
$(OBJDIR)/rhd2000evalboard_e0b412d5.o \
@@ -129,13 +74,92 @@ OBJECTS := \
$(OBJDIR)/FPGAThread_a8dc34ed.o \
$(OBJDIR)/DataBuffer_6ae4f549.o \
$(OBJDIR)/DataThread_b2a47a13.o \
- $(OBJDIR)/RecordNode_2b7a1a2.o \
- $(OBJDIR)/SignalGenerator_a9cf4806.o \
- $(OBJDIR)/ResamplingNode_27a58a6b.o \
- $(OBJDIR)/FilterNode_817e9c9.o \
- $(OBJDIR)/SourceNode_c2d6336c.o \
- $(OBJDIR)/GenericProcessor_733760aa.o \
- $(OBJDIR)/ProcessorGraph_68b34a0b.o \
+ $(OBJDIR)/Bessel_7e54cb27.o \
+ $(OBJDIR)/Biquad_622c856b.o \
+ $(OBJDIR)/Butterworth_6aca939b.o \
+ $(OBJDIR)/Cascade_b39fccc1.o \
+ $(OBJDIR)/ChebyshevI_e0373d09.o \
+ $(OBJDIR)/ChebyshevII_281496aa.o \
+ $(OBJDIR)/Custom_fce9f54e.o \
+ $(OBJDIR)/Design_596f3d1b.o \
+ $(OBJDIR)/Documentation_89e2d3c7.o \
+ $(OBJDIR)/Elliptic_6f6493df.o \
+ $(OBJDIR)/Filter_fe9ed9d5.o \
+ $(OBJDIR)/Legendre_6dd0035d.o \
+ $(OBJDIR)/Param_4e0cc01a.o \
+ $(OBJDIR)/PoleFilter_fb8cf3ad.o \
+ $(OBJDIR)/RBJ_6081b347.o \
+ $(OBJDIR)/RootFinder_11229605.o \
+ $(OBJDIR)/State_5d41ca1e.o \
+ $(OBJDIR)/ChannelSelector_c1430874.o \
+ $(OBJDIR)/ElectrodeButtons_a6064cc.o \
+ $(OBJDIR)/GenericEditor_becb2ad6.o \
+ $(OBJDIR)/ImageIcon_c89b23a6.o \
+ $(OBJDIR)/VisualizerEditor_3672b003.o \
+ $(OBJDIR)/EventDetector_d0f4d00c.o \
+ $(OBJDIR)/EventNode_857d5604.o \
+ $(OBJDIR)/EventNodeEditor_2652ddd1.o \
+ $(OBJDIR)/FileReader_e4a9ccaa.o \
+ $(OBJDIR)/FileReaderEditor_e1193ff7.o \
+ $(OBJDIR)/FilterEditor_93e366f5.o \
+ $(OBJDIR)/FilterNode_d2b4d9ca.o \
+ $(OBJDIR)/FPGAOutput_9ccd34ea.o \
+ $(OBJDIR)/FPGAOutputEditor_749d7837.o \
+ $(OBJDIR)/GenericProcessor_3e79932a.o \
+ $(OBJDIR)/LfpDisplayCanvas_9bbf9660.o \
+ $(OBJDIR)/LfpDisplayEditor_e7c32ff5.o \
+ $(OBJDIR)/LfpDisplayNode_fdf2e2ca.o \
+ $(OBJDIR)/LfpTriggeredAverageCanvas_5ba95b5e.o \
+ $(OBJDIR)/LfpTriggeredAverageEditor_a7acf4f3.o \
+ $(OBJDIR)/LfpTriggeredAverageNode_2ee5cf48.o \
+ $(OBJDIR)/Merger_53fb4e4a.o \
+ $(OBJDIR)/MergerEditor_e36b0997.o \
+ $(OBJDIR)/MessageCenter_bd1ba084.o \
+ $(OBJDIR)/MessageCenterEditor_afaf4851.o \
+ $(OBJDIR)/ParameterEditor_112258eb.o \
+ $(OBJDIR)/Parameter_b3e5ac9e.o \
+ $(OBJDIR)/PhaseDetector_8a25ed0e.o \
+ $(OBJDIR)/PhaseDetectorEditor_eaec855b.o \
+ $(OBJDIR)/ProcessorGraph_8c3a250a.o \
+ $(OBJDIR)/PulsePalOutput_f41ce62a.o \
+ $(OBJDIR)/PulsePalOutputEditor_3d333977.o \
+ $(OBJDIR)/RecordControl_ecb8ada4.o \
+ $(OBJDIR)/RecordControlEditor_4355fd71.o \
+ $(OBJDIR)/EngineConfigWindow_4fd44ceb.o \
+ $(OBJDIR)/HDF5FileFormat_be712135.o \
+ $(OBJDIR)/HDF5Recording_d14f7b19.o \
+ $(OBJDIR)/OriginalRecording_d6dc3293.o \
+ $(OBJDIR)/RecordEngine_97ef83aa.o \
+ $(OBJDIR)/RecordNode_cc21a82a.o \
+ $(OBJDIR)/ReferenceNode_97454f26.o \
+ $(OBJDIR)/ReferenceNodeEditor_7d0ff573.o \
+ $(OBJDIR)/ResamplingNode_9825590a.o \
+ $(OBJDIR)/ResamplingNodeEditor_8b120457.o \
+ $(OBJDIR)/PulsePal_14932a18.o \
+ $(OBJDIR)/ofArduino_12f202a5.o \
+ $(OBJDIR)/ofSerial_c3b0a9e1.o \
+ $(OBJDIR)/SerialInput_f5b197b8.o \
+ $(OBJDIR)/SerialInputEditor_46740885.o \
+ $(OBJDIR)/SignalGenerator_993274e2.o \
+ $(OBJDIR)/SignalGeneratorEditor_b8e0de2f.o \
+ $(OBJDIR)/SourceNode_de3985ea.o \
+ $(OBJDIR)/SourceNodeEditor_cdc90937.o \
+ $(OBJDIR)/SpikeDetector_50b619e4.o \
+ $(OBJDIR)/SpikeDetectorEditor_502139b1.o \
+ $(OBJDIR)/SpikeDisplayCanvas_2219bd20.o \
+ $(OBJDIR)/SpikeDisplayEditor_6e1d56b5.o \
+ $(OBJDIR)/SpikeDisplayNode_be27b98a.o \
+ $(OBJDIR)/SpikeSortBoxes_17f37282.o \
+ $(OBJDIR)/SpikeSorter_5f160cae.o \
+ $(OBJDIR)/SpikeSorterCanvas_f0ead366.o \
+ $(OBJDIR)/SpikeSorterEditor_3cee6cfb.o \
+ $(OBJDIR)/Splitter_889c68aa.o \
+ $(OBJDIR)/SplitterEditor_93a6dbf7.o \
+ $(OBJDIR)/DataWindow_83ce6754.o \
+ $(OBJDIR)/SpikeObject_24e8c655.o \
+ $(OBJDIR)/WiFiOutput_416d244a.o \
+ $(OBJDIR)/WiFiOutputEditor_ada45f97.o \
+ $(OBJDIR)/EcubeDialogComponent_2ec3bd57.o \
$(OBJDIR)/CustomArrowButton_206e4278.o \
$(OBJDIR)/GraphViewer_e43fd2ce.o \
$(OBJDIR)/EditorViewportButtons_29af2a5c.o \
@@ -145,7 +169,6 @@ OBJECTS := \
$(OBJDIR)/CustomLookAndFeel_53a8fcdb.o \
$(OBJDIR)/InfoLabel_a2051bf4.o \
$(OBJDIR)/DataViewport_2cf95d2c.o \
- $(OBJDIR)/MessageCenter_748a1cca.o \
$(OBJDIR)/ControlPanel_a895ede3.o \
$(OBJDIR)/UIComponent_d667ba37.o \
$(OBJDIR)/MainWindow_499ac812.o \
@@ -177,9 +200,7 @@ $(OUTDIR)/$(TARGET): $(OBJECTS) $(LDDEPS) $(RESOURCES)
clean:
@echo Cleaning open-ephys
- -@rm -f $(OUTDIR)/$(TARGET)
- -@rm -rf $(OBJDIR)/*
- -@rm -rf $(OBJDIR)
+ @$(CLEANCMD)
strip:
@echo Stripping open-ephys
@@ -195,459 +216,539 @@ $(OBJDIR)/PracticalSocket_2574ecc8.o: ../../Source/Network/PracticalSocket.cpp
@echo "Compiling PracticalSocket.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Bessel_63b88b81.o: ../../Source/Dsp/Bessel.cpp
+$(OBJDIR)/AudioComponent_521bd9c9.o: ../../Source/Audio/AudioComponent.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling AudioComponent.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/ArduinoOutput_d5a968de.o: ../../Source/Processors/ArduinoOutput/ArduinoOutput.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling ArduinoOutput.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/ArduinoOutputEditor_e1b7e52b.o: ../../Source/Processors/ArduinoOutput/ArduinoOutputEditor.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling ArduinoOutputEditor.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/AudioEditor_3931be27.o: ../../Source/Processors/AudioNode/AudioEditor.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling AudioEditor.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/AudioNode_3db3557c.o: ../../Source/Processors/AudioNode/AudioNode.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling AudioNode.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/AudioResamplingNode_bdba71b0.o: ../../Source/Processors/AudioResamplingNode/AudioResamplingNode.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling AudioResamplingNode.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/Channel_5cb2d4d2.o: ../../Source/Processors/Channel/Channel.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling Channel.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/ChannelMappingEditor_9b145f15.o: ../../Source/Processors/ChannelMappingNode/ChannelMappingEditor.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling ChannelMappingEditor.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/ChannelMappingNode_ec0559ea.o: ../../Source/Processors/ChannelMappingNode/ChannelMappingNode.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling ChannelMappingNode.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/EcubeEditor_ba242592.o: ../../Source/Processors/DataThreads/EcubeEditor.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling EcubeEditor.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/RHD2000Editor_dbd5a24.o: ../../Source/Processors/DataThreads/RHD2000Editor.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling RHD2000Editor.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/EcubeThread_d0477baf.o: ../../Source/Processors/DataThreads/EcubeThread.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling EcubeThread.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/okFrontPanelDLL_87687880.o: ../../Source/Processors/DataThreads/rhythm-api/okFrontPanelDLL.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling okFrontPanelDLL.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/rhd2000datablock_722d8dae.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000datablock.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling rhd2000datablock.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/rhd2000evalboard_e0b412d5.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling rhd2000evalboard.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/rhd2000registers_cf6cd63b.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000registers.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling rhd2000registers.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/RHD2000Thread_23e0b041.o: ../../Source/Processors/DataThreads/RHD2000Thread.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling RHD2000Thread.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/FileReaderThread_933ea08.o: ../../Source/Processors/DataThreads/FileReaderThread.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling FileReaderThread.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/FPGAThread_a8dc34ed.o: ../../Source/Processors/DataThreads/FPGAThread.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling FPGAThread.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/DataBuffer_6ae4f549.o: ../../Source/Processors/DataThreads/DataBuffer.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling DataBuffer.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/DataThread_b2a47a13.o: ../../Source/Processors/DataThreads/DataThread.cpp
+ -@mkdir -p $(OBJDIR)
+ @echo "Compiling DataThread.cpp"
+ @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
+
+$(OBJDIR)/Bessel_7e54cb27.o: ../../Source/Processors/Dsp/Bessel.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Bessel.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Biquad_479045c5.o: ../../Source/Dsp/Biquad.cpp
+$(OBJDIR)/Biquad_622c856b.o: ../../Source/Processors/Dsp/Biquad.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Biquad.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Butterworth_a752fb81.o: ../../Source/Dsp/Butterworth.cpp
+$(OBJDIR)/Butterworth_6aca939b.o: ../../Source/Processors/Dsp/Butterworth.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Butterworth.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Cascade_7ab417a7.o: ../../Source/Dsp/Cascade.cpp
+$(OBJDIR)/Cascade_b39fccc1.o: ../../Source/Processors/Dsp/Cascade.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Cascade.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ChebyshevI_f2af4063.o: ../../Source/Dsp/ChebyshevI.cpp
+$(OBJDIR)/ChebyshevI_e0373d09.o: ../../Source/Processors/Dsp/ChebyshevI.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling ChebyshevI.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ChebyshevII_649cfe90.o: ../../Source/Dsp/ChebyshevII.cpp
+$(OBJDIR)/ChebyshevII_281496aa.o: ../../Source/Processors/Dsp/ChebyshevII.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling ChebyshevII.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Custom_e24db5a8.o: ../../Source/Dsp/Custom.cpp
+$(OBJDIR)/Custom_fce9f54e.o: ../../Source/Processors/Dsp/Custom.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Custom.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Design_3ed2fd75.o: ../../Source/Dsp/Design.cpp
+$(OBJDIR)/Design_596f3d1b.o: ../../Source/Processors/Dsp/Design.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Design.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Documentation_c5f0da2d.o: ../../Source/Dsp/Documentation.cpp
+$(OBJDIR)/Documentation_89e2d3c7.o: ../../Source/Processors/Dsp/Documentation.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Documentation.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Elliptic_8ad9a5b9.o: ../../Source/Dsp/Elliptic.cpp
+$(OBJDIR)/Elliptic_6f6493df.o: ../../Source/Processors/Dsp/Elliptic.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Elliptic.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Filter_e4029a2f.o: ../../Source/Dsp/Filter.cpp
+$(OBJDIR)/Filter_fe9ed9d5.o: ../../Source/Processors/Dsp/Filter.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Filter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Legendre_89451537.o: ../../Source/Dsp/Legendre.cpp
+$(OBJDIR)/Legendre_6dd0035d.o: ../../Source/Processors/Dsp/Legendre.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Legendre.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Param_13628c80.o: ../../Source/Dsp/Param.cpp
+$(OBJDIR)/Param_4e0cc01a.o: ../../Source/Processors/Dsp/Param.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling Param.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PoleFilter_e04f707.o: ../../Source/Dsp/PoleFilter.cpp
+$(OBJDIR)/PoleFilter_fb8cf3ad.o: ../../Source/Processors/Dsp/PoleFilter.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling PoleFilter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RBJ_418b612d.o: ../../Source/Dsp/RBJ.cpp
+$(OBJDIR)/RBJ_6081b347.o: ../../Source/Processors/Dsp/RBJ.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling RBJ.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RootFinder_239a995f.o: ../../Source/Dsp/RootFinder.cpp
+$(OBJDIR)/RootFinder_11229605.o: ../../Source/Processors/Dsp/RootFinder.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling RootFinder.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/State_22979684.o: ../../Source/Dsp/State.cpp
+$(OBJDIR)/State_5d41ca1e.o: ../../Source/Processors/Dsp/State.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling State.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/AudioComponent_521bd9c9.o: ../../Source/Audio/AudioComponent.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling AudioComponent.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
-$(OBJDIR)/SerialInput_855a46b1.o: ../../Source/Processors/SerialInput.cpp
+$(OBJDIR)/ChannelSelector_c1430874.o: ../../Source/Processors/Editors/ChannelSelector.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SerialInput.cpp"
+ @echo "Compiling ChannelSelector.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FileReader_18023b0e.o: ../../Source/Processors/FileReader.cpp
+$(OBJDIR)/ElectrodeButtons_a6064cc.o: ../../Source/Processors/Editors/ElectrodeButtons.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FileReader.cpp"
+ @echo "Compiling ElectrodeButtons.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ChannelMappingNode_d9219b9c.o: ../../Source/Processors/ChannelMappingNode.cpp
+$(OBJDIR)/GenericEditor_becb2ad6.o: ../../Source/Processors/Editors/GenericEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ChannelMappingNode.cpp"
+ @echo "Compiling GenericEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PulsePalOutput_9f4ef492.o: ../../Source/Processors/PulsePalOutput.cpp
+$(OBJDIR)/ImageIcon_c89b23a6.o: ../../Source/Processors/Editors/ImageIcon.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling PulsePalOutput.cpp"
+ @echo "Compiling ImageIcon.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ReferenceNode_519d3b68.o: ../../Source/Processors/ReferenceNode.cpp
+$(OBJDIR)/VisualizerEditor_3672b003.o: ../../Source/Processors/Editors/VisualizerEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ReferenceNode.cpp"
+ @echo "Compiling VisualizerEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PhaseDetector_7193f7dc.o: ../../Source/Processors/PhaseDetector.cpp
+$(OBJDIR)/EventDetector_d0f4d00c.o: ../../Source/Processors/EventDetector/EventDetector.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling PhaseDetector.cpp"
+ @echo "Compiling EventDetector.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/AudioResamplingNode_3dbffa2d.o: ../../Source/Processors/AudioResamplingNode.cpp
+$(OBJDIR)/EventNode_857d5604.o: ../../Source/Processors/EventNode/EventNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling AudioResamplingNode.cpp"
+ @echo "Compiling EventNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Channel_33a3e5fe.o: ../../Source/Processors/Channel.cpp
+$(OBJDIR)/EventNodeEditor_2652ddd1.o: ../../Source/Processors/EventNode/EventNodeEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling Channel.cpp"
+ @echo "Compiling EventNodeEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PulsePal_14932a18.o: ../../Source/Processors/Serial/PulsePal.cpp
+$(OBJDIR)/FileReader_e4a9ccaa.o: ../../Source/Processors/FileReader/FileReader.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling PulsePal.cpp"
+ @echo "Compiling FileReader.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ofArduino_12f202a5.o: ../../Source/Processors/Serial/ofArduino.cpp
+$(OBJDIR)/FileReaderEditor_e1193ff7.o: ../../Source/Processors/FileReader/FileReaderEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ofArduino.cpp"
+ @echo "Compiling FileReaderEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ofSerial_c3b0a9e1.o: ../../Source/Processors/Serial/ofSerial.cpp
+$(OBJDIR)/FilterEditor_93e366f5.o: ../../Source/Processors/FilterNode/FilterEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ofSerial.cpp"
+ @echo "Compiling FilterEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/EventDetector_4807aa7b.o: ../../Source/Processors/EventDetector.cpp
+$(OBJDIR)/FilterNode_d2b4d9ca.o: ../../Source/Processors/FilterNode/FilterNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling EventDetector.cpp"
+ @echo "Compiling FilterNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FPGAOutput_73b5ffd4.o: ../../Source/Processors/FPGAOutput.cpp
+$(OBJDIR)/FPGAOutput_9ccd34ea.o: ../../Source/Processors/FPGAOutput/FPGAOutput.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling FPGAOutput.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ArduinoOutput_391e90c4.o: ../../Source/Processors/ArduinoOutput.cpp
+$(OBJDIR)/FPGAOutputEditor_749d7837.o: ../../Source/Processors/FPGAOutput/FPGAOutputEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ArduinoOutput.cpp"
+ @echo "Compiling FPGAOutputEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/Parameter_ae008024.o: ../../Source/Processors/Parameter.cpp
+$(OBJDIR)/GenericProcessor_3e79932a.o: ../../Source/Processors/GenericProcessor/GenericProcessor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling Parameter.cpp"
+ @echo "Compiling GenericProcessor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SpikeDisplayNode_9c52e4ad.o: ../../Source/Processors/SpikeDisplayNode.cpp
+$(OBJDIR)/LfpDisplayCanvas_9bbf9660.o: ../../Source/Processors/LfpDisplayNode/LfpDisplayCanvas.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeDisplayNode.cpp"
+ @echo "Compiling LfpDisplayCanvas.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/WiFiOutput_fa464ec5.o: ../../Source/Processors/WiFiOutput.cpp
+$(OBJDIR)/LfpDisplayEditor_e7c32ff5.o: ../../Source/Processors/LfpDisplayNode/LfpDisplayEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling WiFiOutput.cpp"
+ @echo "Compiling LfpDisplayEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/LfpDisplayNode_30ef22fd.o: ../../Source/Processors/LfpDisplayNode.cpp
+$(OBJDIR)/LfpDisplayNode_fdf2e2ca.o: ../../Source/Processors/LfpDisplayNode/LfpDisplayNode.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling LfpDisplayNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RecordControl_3e1c6062.o: ../../Source/Processors/Utilities/RecordControl.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling RecordControl.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
-$(OBJDIR)/Merger_2f90542e.o: ../../Source/Processors/Utilities/Merger.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling Merger.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
-$(OBJDIR)/Splitter_6e27a57b.o: ../../Source/Processors/Utilities/Splitter.cpp
+$(OBJDIR)/LfpTriggeredAverageCanvas_5ba95b5e.o: ../../Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling Splitter.cpp"
+ @echo "Compiling LfpTriggeredAverageCanvas.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SpikeObject_24e8c655.o: ../../Source/Processors/Visualization/SpikeObject.cpp
+$(OBJDIR)/LfpTriggeredAverageEditor_a7acf4f3.o: ../../Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeObject.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
-$(OBJDIR)/SpikeDisplayCanvas_b208ff6e.o: ../../Source/Processors/Visualization/SpikeDisplayCanvas.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeDisplayCanvas.cpp"
+ @echo "Compiling LfpTriggeredAverageEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/DataWindow_83ce6754.o: ../../Source/Processors/Visualization/DataWindow.cpp
+$(OBJDIR)/LfpTriggeredAverageNode_2ee5cf48.o: ../../Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling DataWindow.cpp"
+ @echo "Compiling LfpTriggeredAverageNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/LfpDisplayCanvas_4a58e87e.o: ../../Source/Processors/Visualization/LfpDisplayCanvas.cpp
+$(OBJDIR)/Merger_53fb4e4a.o: ../../Source/Processors/Merger/Merger.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling LfpDisplayCanvas.cpp"
+ @echo "Compiling Merger.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SpikeDetector_300d85e7.o: ../../Source/Processors/SpikeDetector.cpp
+$(OBJDIR)/MergerEditor_e36b0997.o: ../../Source/Processors/Merger/MergerEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeDetector.cpp"
+ @echo "Compiling MergerEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/AudioNode_94606ff3.o: ../../Source/Processors/AudioNode.cpp
+$(OBJDIR)/MessageCenter_bd1ba084.o: ../../Source/Processors/MessageCenter/MessageCenter.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling AudioNode.cpp"
+ @echo "Compiling MessageCenter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/EventNode_95c842b7.o: ../../Source/Processors/EventNode.cpp
+$(OBJDIR)/MessageCenterEditor_afaf4851.o: ../../Source/Processors/MessageCenter/MessageCenterEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling EventNode.cpp"
+ @echo "Compiling MessageCenterEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/LfpTriggeredAverageEditor_101d75b.o: ../../Source/Processors/Editors/LfpTriggeredAverageEditor.cpp
+$(OBJDIR)/ParameterEditor_112258eb.o: ../../Source/Processors/Parameter/ParameterEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling LfpTriggeredAverageEditor.cpp"
+ @echo "Compiling ParameterEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SerialInputEditor_c00f31f5.o: ../../Source/Processors/Editors/SerialInputEditor.cpp
+$(OBJDIR)/Parameter_b3e5ac9e.o: ../../Source/Processors/Parameter/Parameter.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SerialInputEditor.cpp"
+ @echo "Compiling Parameter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ElectrodeButtons_a6064cc.o: ../../Source/Processors/Editors/ElectrodeButtons.cpp
+$(OBJDIR)/PhaseDetector_8a25ed0e.o: ../../Source/Processors/PhaseDetector/PhaseDetector.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ElectrodeButtons.cpp"
+ @echo "Compiling PhaseDetector.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ChannelMappingEditor_dd803b0.o: ../../Source/Processors/Editors/ChannelMappingEditor.cpp
+$(OBJDIR)/PhaseDetectorEditor_eaec855b.o: ../../Source/Processors/PhaseDetector/PhaseDetectorEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ChannelMappingEditor.cpp"
+ @echo "Compiling PhaseDetectorEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FileReaderEditor_16fd7744.o: ../../Source/Processors/Editors/FileReaderEditor.cpp
+$(OBJDIR)/ProcessorGraph_8c3a250a.o: ../../Source/Processors/ProcessorGraph/ProcessorGraph.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FileReaderEditor.cpp"
+ @echo "Compiling ProcessorGraph.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PhaseDetectorEditor_f53aa520.o: ../../Source/Processors/Editors/PhaseDetectorEditor.cpp
+$(OBJDIR)/PulsePalOutput_f41ce62a.o: ../../Source/Processors/PulsePalOutput/PulsePalOutput.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling PhaseDetectorEditor.cpp"
+ @echo "Compiling PulsePalOutput.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/PulsePalOutputEditor_ab5be148.o: ../../Source/Processors/Editors/PulsePalOutputEditor.cpp
+$(OBJDIR)/PulsePalOutputEditor_3d333977.o: ../../Source/Processors/PulsePalOutput/PulsePalOutputEditor.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling PulsePalOutputEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RHD2000Editor_d7ddd6b.o: ../../Source/Processors/Editors/RHD2000Editor.cpp
+$(OBJDIR)/RecordControl_ecb8ada4.o: ../../Source/Processors/RecordControl/RecordControl.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling RHD2000Editor.cpp"
+ @echo "Compiling RecordControl.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RecordControlEditor_244084cb.o: ../../Source/Processors/Editors/RecordControlEditor.cpp
+$(OBJDIR)/RecordControlEditor_4355fd71.o: ../../Source/Processors/RecordControl/RecordControlEditor.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling RecordControlEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ReferenceNodeEditor_19ee0fac.o: ../../Source/Processors/Editors/ReferenceNodeEditor.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling ReferenceNodeEditor.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
-$(OBJDIR)/ResamplingNodeEditor_f2d6f061.o: ../../Source/Processors/Editors/ResamplingNodeEditor.cpp
+$(OBJDIR)/EngineConfigWindow_4fd44ceb.o: ../../Source/Processors/RecordNode/EngineConfigWindow.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ResamplingNodeEditor.cpp"
+ @echo "Compiling EngineConfigWindow.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FPGAOutputEditor_cfe00f8a.o: ../../Source/Processors/Editors/FPGAOutputEditor.cpp
+$(OBJDIR)/HDF5FileFormat_be712135.o: ../../Source/Processors/RecordNode/HDF5FileFormat.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FPGAOutputEditor.cpp"
+ @echo "Compiling HDF5FileFormat.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ArduinoOutputEditor_1118f008.o: ../../Source/Processors/Editors/ArduinoOutputEditor.cpp
+$(OBJDIR)/HDF5Recording_d14f7b19.o: ../../Source/Processors/RecordNode/HDF5Recording.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ArduinoOutputEditor.cpp"
+ @echo "Compiling HDF5Recording.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ChannelSelector_c1430874.o: ../../Source/Processors/Editors/ChannelSelector.cpp
+$(OBJDIR)/OriginalRecording_d6dc3293.o: ../../Source/Processors/RecordNode/OriginalRecording.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ChannelSelector.cpp"
+ @echo "Compiling OriginalRecording.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ParameterEditor_91f62ae8.o: ../../Source/Processors/Editors/ParameterEditor.cpp
+$(OBJDIR)/RecordEngine_97ef83aa.o: ../../Source/Processors/RecordNode/RecordEngine.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ParameterEditor.cpp"
+ @echo "Compiling RecordEngine.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SpikeDisplayEditor_e1812c1.o: ../../Source/Processors/Editors/SpikeDisplayEditor.cpp
+$(OBJDIR)/RecordNode_cc21a82a.o: ../../Source/Processors/RecordNode/RecordNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeDisplayEditor.cpp"
+ @echo "Compiling RecordNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/VisualizerEditor_3672b003.o: ../../Source/Processors/Editors/VisualizerEditor.cpp
+$(OBJDIR)/ReferenceNode_97454f26.o: ../../Source/Processors/ReferenceNode/ReferenceNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling VisualizerEditor.cpp"
+ @echo "Compiling ReferenceNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/MergerEditor_d1fcc0df.o: ../../Source/Processors/Editors/MergerEditor.cpp
+$(OBJDIR)/ReferenceNodeEditor_7d0ff573.o: ../../Source/Processors/ReferenceNode/ReferenceNodeEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling MergerEditor.cpp"
+ @echo "Compiling ReferenceNodeEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ImageIcon_c89b23a6.o: ../../Source/Processors/Editors/ImageIcon.cpp
+$(OBJDIR)/ResamplingNode_9825590a.o: ../../Source/Processors/ResamplingNode/ResamplingNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ImageIcon.cpp"
+ @echo "Compiling ResamplingNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/WiFiOutputEditor_1d3ba5bb.o: ../../Source/Processors/Editors/WiFiOutputEditor.cpp
+$(OBJDIR)/ResamplingNodeEditor_8b120457.o: ../../Source/Processors/ResamplingNode/ResamplingNodeEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling WiFiOutputEditor.cpp"
+ @echo "Compiling ResamplingNodeEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/EventNodeEditor_2198733b.o: ../../Source/Processors/Editors/EventNodeEditor.cpp
+$(OBJDIR)/PulsePal_14932a18.o: ../../Source/Processors/Serial/PulsePal.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling EventNodeEditor.cpp"
+ @echo "Compiling PulsePal.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SignalGeneratorEditor_3223ac0a.o: ../../Source/Processors/Editors/SignalGeneratorEditor.cpp
+$(OBJDIR)/ofArduino_12f202a5.o: ../../Source/Processors/Serial/ofArduino.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SignalGeneratorEditor.cpp"
+ @echo "Compiling ofArduino.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/LfpDisplayEditor_99d75351.o: ../../Source/Processors/Editors/LfpDisplayEditor.cpp
+$(OBJDIR)/ofSerial_c3b0a9e1.o: ../../Source/Processors/Serial/ofSerial.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling LfpDisplayEditor.cpp"
+ @echo "Compiling ofSerial.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SourceNodeEditor_8d813122.o: ../../Source/Processors/Editors/SourceNodeEditor.cpp
+$(OBJDIR)/SerialInput_f5b197b8.o: ../../Source/Processors/SerialInput/SerialInput.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SourceNodeEditor.cpp"
+ @echo "Compiling SerialInput.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SplitterEditor_c2199b6c.o: ../../Source/Processors/Editors/SplitterEditor.cpp
+$(OBJDIR)/SerialInputEditor_46740885.o: ../../Source/Processors/SerialInput/SerialInputEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SplitterEditor.cpp"
+ @echo "Compiling SerialInputEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SpikeDetectorEditor_2fb63eeb.o: ../../Source/Processors/Editors/SpikeDetectorEditor.cpp
+$(OBJDIR)/SignalGenerator_993274e2.o: ../../Source/Processors/SignalGenerator/SignalGenerator.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SpikeDetectorEditor.cpp"
+ @echo "Compiling SignalGenerator.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/AudioEditor_fb2c6555.o: ../../Source/Processors/Editors/AudioEditor.cpp
+$(OBJDIR)/SignalGeneratorEditor_b8e0de2f.o: ../../Source/Processors/SignalGenerator/SignalGeneratorEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling AudioEditor.cpp"
+ @echo "Compiling SignalGeneratorEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FilterEditor_dfe1f39d.o: ../../Source/Processors/Editors/FilterEditor.cpp
+$(OBJDIR)/SourceNode_de3985ea.o: ../../Source/Processors/SourceNode/SourceNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FilterEditor.cpp"
+ @echo "Compiling SourceNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/GenericEditor_becb2ad6.o: ../../Source/Processors/Editors/GenericEditor.cpp
+$(OBJDIR)/SourceNodeEditor_cdc90937.o: ../../Source/Processors/SourceNode/SourceNodeEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling GenericEditor.cpp"
+ @echo "Compiling SourceNodeEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/okFrontPanelDLL_87687880.o: ../../Source/Processors/DataThreads/rhythm-api/okFrontPanelDLL.cpp
+$(OBJDIR)/SpikeDetector_50b619e4.o: ../../Source/Processors/SpikeDetector/SpikeDetector.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling okFrontPanelDLL.cpp"
+ @echo "Compiling SpikeDetector.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/rhd2000datablock_722d8dae.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000datablock.cpp
+$(OBJDIR)/SpikeDetectorEditor_502139b1.o: ../../Source/Processors/SpikeDetector/SpikeDetectorEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling rhd2000datablock.cpp"
+ @echo "Compiling SpikeDetectorEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/rhd2000evalboard_e0b412d5.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp
+$(OBJDIR)/SpikeDisplayCanvas_2219bd20.o: ../../Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling rhd2000evalboard.cpp"
+ @echo "Compiling SpikeDisplayCanvas.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/rhd2000registers_cf6cd63b.o: ../../Source/Processors/DataThreads/rhythm-api/rhd2000registers.cpp
+$(OBJDIR)/SpikeDisplayEditor_6e1d56b5.o: ../../Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling rhd2000registers.cpp"
+ @echo "Compiling SpikeDisplayEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RHD2000Thread_23e0b041.o: ../../Source/Processors/DataThreads/RHD2000Thread.cpp
+$(OBJDIR)/SpikeDisplayNode_be27b98a.o: ../../Source/Processors/SpikeDisplayNode/SpikeDisplayNode.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling RHD2000Thread.cpp"
+ @echo "Compiling SpikeDisplayNode.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FileReaderThread_933ea08.o: ../../Source/Processors/DataThreads/FileReaderThread.cpp
+$(OBJDIR)/SpikeSortBoxes_17f37282.o: ../../Source/Processors/SpikeSorter/SpikeSortBoxes.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FileReaderThread.cpp"
+ @echo "Compiling SpikeSortBoxes.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FPGAThread_a8dc34ed.o: ../../Source/Processors/DataThreads/FPGAThread.cpp
+$(OBJDIR)/SpikeSorter_5f160cae.o: ../../Source/Processors/SpikeSorter/SpikeSorter.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FPGAThread.cpp"
+ @echo "Compiling SpikeSorter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/DataBuffer_6ae4f549.o: ../../Source/Processors/DataThreads/DataBuffer.cpp
+$(OBJDIR)/SpikeSorterCanvas_f0ead366.o: ../../Source/Processors/SpikeSorter/SpikeSorterCanvas.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling DataBuffer.cpp"
+ @echo "Compiling SpikeSorterCanvas.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/DataThread_b2a47a13.o: ../../Source/Processors/DataThreads/DataThread.cpp
+$(OBJDIR)/SpikeSorterEditor_3cee6cfb.o: ../../Source/Processors/SpikeSorter/SpikeSorterEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling DataThread.cpp"
+ @echo "Compiling SpikeSorterEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/RecordNode_2b7a1a2.o: ../../Source/Processors/RecordNode.cpp
+$(OBJDIR)/Splitter_889c68aa.o: ../../Source/Processors/Splitter/Splitter.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling RecordNode.cpp"
+ @echo "Compiling Splitter.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SignalGenerator_a9cf4806.o: ../../Source/Processors/SignalGenerator.cpp
+$(OBJDIR)/SplitterEditor_93a6dbf7.o: ../../Source/Processors/Splitter/SplitterEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SignalGenerator.cpp"
+ @echo "Compiling SplitterEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ResamplingNode_27a58a6b.o: ../../Source/Processors/ResamplingNode.cpp
+$(OBJDIR)/DataWindow_83ce6754.o: ../../Source/Processors/Visualization/DataWindow.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ResamplingNode.cpp"
+ @echo "Compiling DataWindow.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/FilterNode_817e9c9.o: ../../Source/Processors/FilterNode.cpp
+$(OBJDIR)/SpikeObject_24e8c655.o: ../../Source/Processors/Visualization/SpikeObject.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling FilterNode.cpp"
+ @echo "Compiling SpikeObject.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/SourceNode_c2d6336c.o: ../../Source/Processors/SourceNode.cpp
+$(OBJDIR)/WiFiOutput_416d244a.o: ../../Source/Processors/WiFiOutput/WiFiOutput.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling SourceNode.cpp"
+ @echo "Compiling WiFiOutput.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/GenericProcessor_733760aa.o: ../../Source/Processors/GenericProcessor.cpp
+$(OBJDIR)/WiFiOutputEditor_ada45f97.o: ../../Source/Processors/WiFiOutput/WiFiOutputEditor.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling GenericProcessor.cpp"
+ @echo "Compiling WiFiOutputEditor.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/ProcessorGraph_68b34a0b.o: ../../Source/Processors/ProcessorGraph.cpp
+$(OBJDIR)/EcubeDialogComponent_2ec3bd57.o: ../../Source/UI/EcubeDialogComponent.cpp
-@mkdir -p $(OBJDIR)
- @echo "Compiling ProcessorGraph.cpp"
+ @echo "Compiling EcubeDialogComponent.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
$(OBJDIR)/CustomArrowButton_206e4278.o: ../../Source/UI/CustomArrowButton.cpp
@@ -695,11 +796,6 @@ $(OBJDIR)/DataViewport_2cf95d2c.o: ../../Source/UI/DataViewport.cpp
@echo "Compiling DataViewport.cpp"
@$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-$(OBJDIR)/MessageCenter_748a1cca.o: ../../Source/UI/MessageCenter.cpp
- -@mkdir -p $(OBJDIR)
- @echo "Compiling MessageCenter.cpp"
- @$(CXX) $(CXXFLAGS) -o "$@" -c "$<"
-
$(OBJDIR)/ControlPanel_a895ede3.o: ../../Source/UI/ControlPanel.cpp
-@mkdir -p $(OBJDIR)
@echo "Compiling ControlPanel.cpp"
diff --git a/Builds/Linux/build/libokFrontPanel.so b/Builds/Linux/build/libokFrontPanel.so
index 6eb1a88a56608f52474e05e824176e04535e4a9e..f8c6386c193b5822adc9a585a0445c1e5efa2c95 100755
Binary files a/Builds/Linux/build/libokFrontPanel.so and b/Builds/Linux/build/libokFrontPanel.so differ
diff --git a/Builds/MacOSX/Info.plist b/Builds/MacOSX/Info.plist
index 6ca85538f90062ec259a6f370c526d4795119164..1462805bd0e24f7a5d9bb1b84d6a1552dbfcf79c 100644
--- a/Builds/MacOSX/Info.plist
+++ b/Builds/MacOSX/Info.plist
@@ -16,9 +16,9 @@
<key>CFBundleSignature</key>
<string>????</string>
<key>CFBundleShortVersionString</key>
- <string>0.3.1</string>
+ <string>0.3.2</string>
<key>CFBundleVersion</key>
- <string>0.3.1</string>
+ <string>0.3.2</string>
<key>NSHumanReadableCopyright</key>
<string>Open Ephys</string>
<key>NSHighResolutionCapable</key>
diff --git a/Builds/MacOSX/open-ephys.xcodeproj/project.pbxproj b/Builds/MacOSX/open-ephys.xcodeproj/project.pbxproj
index 46cdbcc7af78a86a0056faf8f6ccbf44d5eaec0e..a4af177b4721522963e88fdb78474ce370e1bc6c 100644
--- a/Builds/MacOSX/open-ephys.xcodeproj/project.pbxproj
+++ b/Builds/MacOSX/open-ephys.xcodeproj/project.pbxproj
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name = Icons;
sourceTree = "<group>";
};
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+ 54B7796F6DCF5531789CCF43 /* Types.h */,
+ 3846F3FA0FC28CE322073E94 /* Utilities.h */,
+ );
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+ sourceTree = "<group>";
+ };
09C2000EFECCE35F3F793E55 /* lookandfeel */ = {
isa = PBXGroup;
children = (
@@ -1445,6 +1537,36 @@
name = native;
sourceTree = "<group>";
};
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+ 9B1962D340B217B19B077F2A /* OriginalRecording.h */,
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+ 949422DF0532222450E95926 /* RecordNode.cpp */,
+ B657AEAFB3404A5CB270C413 /* RecordNode.h */,
+ );
+ name = RecordNode;
+ sourceTree = "<group>";
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+ 10488A99117FC063889F25C7 /* FileReader */ = {
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+ 56F810EF10E01535A417B671 /* FileReaderEditor.cpp */,
+ BF8C15407347975836BFA88F /* FileReaderEditor.h */,
+ );
+ name = FileReader;
+ sourceTree = "<group>";
+ };
147EC1A2CF770171DFB61105 /* sampler */ = {
isa = PBXGroup;
children = (
@@ -1502,6 +1624,15 @@
name = midi;
sourceTree = "<group>";
};
+ 1AD84CD59ADC8ACA5C6A1551 /* ProcessorGraph */ = {
+ isa = PBXGroup;
+ children = (
+ 4CB63EE1552BBFDEB1DADB0A /* ProcessorGraph.cpp */,
+ B695B24906116ADEFC9D9B5C /* ProcessorGraph.h */,
+ );
+ name = ProcessorGraph;
+ sourceTree = "<group>";
+ };
1BF4F68D4169491DD79D0B01 /* contexts */ = {
isa = PBXGroup;
children = (
@@ -1516,9 +1647,22 @@
name = contexts;
sourceTree = "<group>";
};
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+ isa = PBXGroup;
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+ 70651FEF347D8DE167B68EB8 /* FilterNode.h */,
+ );
+ name = FilterNode;
+ sourceTree = "<group>";
+ };
1D78FCCF430CD91FD1DBD95B /* UI */ = {
isa = PBXGroup;
children = (
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F960CC94B136201BDA148EEA /* CustomArrowButton.cpp */,
C59B01C8DB5B3B4773032E12 /* CustomArrowButton.h */,
E5C1D021C0FD6FAD082C5D75 /* GraphViewer.cpp */,
@@ -1537,8 +1681,6 @@
D2696B30CBEAD7CE72510AFA /* InfoLabel.h */,
47A3942AC30A3212C01F1CAF /* DataViewport.cpp */,
7D9374931D760ADC65DCBFC6 /* DataViewport.h */,
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610E487E060C42B52FD5AAC9 /* ControlPanel.cpp */,
0FE8ACC50ED8E7FFC9E6B9B4 /* ControlPanel.h */,
D2A3B4CDD296B4CEC6902FD7 /* UIComponent.cpp */,
@@ -1579,6 +1721,17 @@
name = maths;
sourceTree = "<group>";
};
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+ isa = PBXGroup;
+ children = (
+ 748F08ACA463113F570C51AC /* SignalGenerator.cpp */,
+ D50EA137CEA9654AA8AB3D4C /* SignalGenerator.h */,
+ 0915EBE101DD5974F692755B /* SignalGeneratorEditor.cpp */,
+ 38E1C53CF5BB38247BCAA909 /* SignalGeneratorEditor.h */,
+ );
+ name = SignalGenerator;
+ sourceTree = "<group>";
+ };
208431C2D4A7C383FD247CE3 /* format_types */ = {
isa = PBXGroup;
children = (
@@ -1608,6 +1761,17 @@
name = sources;
sourceTree = "<group>";
};
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+ isa = PBXGroup;
+ children = (
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+ 679BBE9F6C930A1941BA7944 /* ReferenceNode.h */,
+ 6D4D435D25CFC019E0FCF4A1 /* ReferenceNodeEditor.cpp */,
+ 883E23B392AFB86C3EE1A2AC /* ReferenceNodeEditor.h */,
+ );
+ name = ReferenceNode;
+ sourceTree = "<group>";
+ };
21BB3DD364DC0C39CC9594B9 /* processors */ = {
isa = PBXGroup;
children = (
@@ -1667,6 +1831,19 @@
name = broadcasters;
sourceTree = "<group>";
};
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+ isa = PBXGroup;
+ children = (
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+ E04512D01D2F6FE00C336CAD /* LfpDisplayEditor.h */,
+ 1C64C490BD7FE9E57D6C682D /* LfpDisplayNode.cpp */,
+ B2F72769CF14BD7F882E9542 /* LfpDisplayNode.h */,
+ );
+ name = LfpDisplayNode;
+ sourceTree = "<group>";
+ };
2A882D30C0E50E70FCD95554 /* lookandfeel */ = {
isa = PBXGroup;
children = (
@@ -1687,6 +1864,17 @@
name = hashing;
sourceTree = "<group>";
};
+ 2AC55A2E70C6CF50A8C46F6B /* Parameter */ = {
+ isa = PBXGroup;
+ children = (
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+ 4F5D51C5F8174E3824EF8B42 /* Parameter.cpp */,
+ 811BCA5BE226C5188BC5E9B9 /* Parameter.h */,
+ );
+ name = Parameter;
+ sourceTree = "<group>";
+ };
2D49786EE07B37713213F905 /* juce_opengl */ = {
isa = PBXGroup;
children = (
@@ -1740,7 +1928,6 @@
420B0E95F1300ABFDC125DBF /* AccessClass.cpp */,
DB4FF7675E5C98CF62DA8A2E /* AccessClass.h */,
B016FBDF648372A23D7EAAD8 /* Network */,
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C451728043944D40C69166C1 /* Audio */,
83A3E005DDFCC55F277EEDA5 /* Processors */,
1D78FCCF430CD91FD1DBD95B /* UI */,
@@ -1802,6 +1989,17 @@
name = Serial;
sourceTree = "<group>";
};
+ 3EE4DBB6ED04E5B9DA85CDF9 /* ChannelMappingNode */ = {
+ isa = PBXGroup;
+ children = (
+ D0105584D551FED59203CC84 /* ChannelMappingEditor.cpp */,
+ E3F5E0DDF9859755B10B074D /* ChannelMappingEditor.h */,
+ 25CEC111DFEC71FA6828257F /* ChannelMappingNode.cpp */,
+ 589657244185109F68A6B5A2 /* ChannelMappingNode.h */,
+ );
+ name = ChannelMappingNode;
+ sourceTree = "<group>";
+ };
42DE5996B56B332A5B6C636D /* undomanager */ = {
isa = PBXGroup;
children = (
@@ -1867,6 +2065,17 @@
name = juce_graphics;
sourceTree = "<group>";
};
+ 456FCC98D03DFAE9AFEC271B /* ResamplingNode */ = {
+ isa = PBXGroup;
+ children = (
+ E102C308B0722DFFFEFF2415 /* ResamplingNode.cpp */,
+ B574136FEE7957F7439CB346 /* ResamplingNode.h */,
+ 55DFE30C901793E56A7E3A22 /* ResamplingNodeEditor.cpp */,
+ 1785D37A95AF0D67F69F29B6 /* ResamplingNodeEditor.h */,
+ );
+ name = ResamplingNode;
+ sourceTree = "<group>";
+ };
45BA9E76F27503E30F331299 /* commands */ = {
isa = PBXGroup;
children = (
@@ -1936,17 +2145,17 @@
name = embedding;
sourceTree = "<group>";
};
- 4E3C60995CC567F1A839CAE3 /* Utilities */ = {
+ 518310F63C8005A8D097A1D8 /* LfpTriggeredAverageNode */ = {
isa = PBXGroup;
children = (
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- C5785E58E6F915165729EF16 /* RecordControl.h */,
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- 2C4730CAFED4F6292B575318 /* Splitter.cpp */,
- B1082A8A306A1947F5B0E5FC /* Splitter.h */,
- );
- name = Utilities;
+ CC9134D38EBEC67112CA7502 /* LfpTriggeredAverageCanvas.cpp */,
+ 22FAA3DA9944AA853D66114F /* LfpTriggeredAverageCanvas.h */,
+ 20DBF92457AF75C0698D1B26 /* LfpTriggeredAverageEditor.cpp */,
+ ADCEA06868A5085B60487AC3 /* LfpTriggeredAverageEditor.h */,
+ FA12F07F4F9C872C18A2817B /* LfpTriggeredAverageNode.cpp */,
+ DBAB7848C770895CED4E2F95 /* LfpTriggeredAverageNode.h */,
+ );
+ name = LfpTriggeredAverageNode;
sourceTree = "<group>";
};
530413F49A2E29570D8A9761 /* timers */ = {
@@ -1960,6 +2169,17 @@
name = timers;
sourceTree = "<group>";
};
+ 552D8D8CC92277F54C95F760 /* WiFiOutput */ = {
+ isa = PBXGroup;
+ children = (
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+ 3734FF118787377E4C8741D1 /* WiFiOutputEditor.cpp */,
+ 513D20023796491A24EC58A7 /* WiFiOutputEditor.h */,
+ );
+ name = WiFiOutput;
+ sourceTree = "<group>";
+ };
553F5880E9CFE9C4A045C0C0 /* effects */ = {
isa = PBXGroup;
children = (
@@ -2051,6 +2271,15 @@
name = Buttons;
sourceTree = "<group>";
};
+ 5FAE90CAD8DAA5CE48855F38 /* GenericProcessor */ = {
+ isa = PBXGroup;
+ children = (
+ C5654EAA7B65445CF1340983 /* GenericProcessor.cpp */,
+ 012F05BBF926C8F39AC7871B /* GenericProcessor.h */,
+ );
+ name = GenericProcessor;
+ sourceTree = "<group>";
+ };
6101DBF4D993FE2CB50D4F90 /* drawables */ = {
isa = PBXGroup;
children = (
@@ -2287,6 +2516,28 @@
name = capture;
sourceTree = "<group>";
};
+ 7B2364D82845C97E7A1B1924 /* SpikeDisplayNode */ = {
+ isa = PBXGroup;
+ children = (
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+ 34CF4D00D785338941AB9590 /* SpikeDisplayEditor.h */,
+ AC9E30922A14330704FB2573 /* SpikeDisplayNode.cpp */,
+ AE1FC768C646A0EFEC3E3A11 /* SpikeDisplayNode.h */,
+ );
+ name = SpikeDisplayNode;
+ sourceTree = "<group>";
+ };
+ 7BE07AA81C59DD7252F709E6 /* AudioResamplingNode */ = {
+ isa = PBXGroup;
+ children = (
+ 41E88094E8D929866A6DCA9A /* AudioResamplingNode.cpp */,
+ 5E5736CB6D96D5271F1A7597 /* AudioResamplingNode.h */,
+ );
+ name = AudioResamplingNode;
+ sourceTree = "<group>";
+ };
7C6BF9E0D166E4E5C3F2A005 /* native */ = {
isa = PBXGroup;
children = (
@@ -2366,61 +2617,42 @@
83A3E005DDFCC55F277EEDA5 /* Processors */ = {
isa = PBXGroup;
children = (
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- 9BC055494F9FEE3F90630541 /* Channel.cpp */,
- FF450FAFD49105CE7157DFC0 /* Channel.h */,
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+ 9C7703C01E449614C1CD884D /* AudioNode */,
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+ 9F16043BF599BCE0C02A00A5 /* Editors */,
+ F8338C653582335A30EADE40 /* EventDetector */,
+ AE49B2C17B100D5B4F81F694 /* EventNode */,
+ 10488A99117FC063889F25C7 /* FileReader */,
+ 1C714E881A404D148C6170CD /* FilterNode */,
+ 85403FACC153147273CEB933 /* FPGAOutput */,
+ 5FAE90CAD8DAA5CE48855F38 /* GenericProcessor */,
+ 29B817DBDA971F3DA7039F93 /* LfpDisplayNode */,
+ 518310F63C8005A8D097A1D8 /* LfpTriggeredAverageNode */,
+ A1678CA8F8E882F5D7EFDB3E /* Merger */,
+ F12EEDE785E2D38F654AE1B1 /* MessageCenter */,
+ 2AC55A2E70C6CF50A8C46F6B /* Parameter */,
+ B59685FA20FE7A2DC1FF65C0 /* PhaseDetector */,
+ 1AD84CD59ADC8ACA5C6A1551 /* ProcessorGraph */,
+ EC06134D54CF6C9870853ED6 /* PulsePalOutput */,
+ F884A8B18F33A6FFE6809906 /* RecordControl */,
+ 0E7092A11A3C96E5ECA71CDA /* RecordNode */,
+ 21389ED521B378402213EFC3 /* ReferenceNode */,
+ 456FCC98D03DFAE9AFEC271B /* ResamplingNode */,
3DE49DED45C5CDD8D184E248 /* Serial */,
- 39464D2A22940DA2DDCCCFC6 /* EventDetector.cpp */,
- 91D7B1F8B94AE9CFCC53771F /* EventDetector.h */,
- 9D78F50147005EDB0E89E2B4 /* FPGAOutput.cpp */,
- DB702F259EF24DAB9EC99D0A /* FPGAOutput.h */,
- D38E60AC4854B6E1EDE488EB /* ArduinoOutput.cpp */,
- D128F31F18331117287F5EC5 /* ArduinoOutput.h */,
- CD2370F8F4A44446558A08FB /* Parameter.cpp */,
- E2F46E110416D628C11392CA /* Parameter.h */,
- DAA04A0FD47097893712B241 /* SpikeDisplayNode.cpp */,
- 5EA61EDD64BE1E401DD0AA5E /* SpikeDisplayNode.h */,
- 2D41C43686CDE35E86A389D7 /* WiFiOutput.cpp */,
- B917780A75945062761B6945 /* WiFiOutput.h */,
- EA535EA158451360B7B8AE52 /* LfpDisplayNode.cpp */,
- DBB86AD59BA3F6EC09AF2C02 /* LfpDisplayNode.h */,
- 4E3C60995CC567F1A839CAE3 /* Utilities */,
+ C451C93CE8C359C1A4BD23C7 /* SerialInput */,
+ 1ECFEAA83B8E49686FFA6F2F /* SignalGenerator */,
+ CB7739DB9922F30C029B2A02 /* SourceNode */,
+ B17425A884659AB7B5FDCDD0 /* SpikeDetector */,
+ 7B2364D82845C97E7A1B1924 /* SpikeDisplayNode */,
+ D3F8D770C9E60B5BA2CCBC68 /* SpikeSorter */,
+ E2624A71F15AE5C96B34505B /* Splitter */,
C4B85C0286AC2510730355E3 /* Visualization */,
- BC3B7E4E25505D9044BFACC7 /* SpikeDetector.cpp */,
- B70D836E0756C3D4EE8E20F2 /* SpikeDetector.h */,
- B27F558F42AC78F0E564B5AF /* AudioNode.cpp */,
- 5F64FDAFCA899A16C7FDDBCA /* AudioNode.h */,
- F94DD42C7BBF81C101D3F605 /* EventNode.cpp */,
- E42B745B4D2DCADE54F94757 /* EventNode.h */,
- 9F16043BF599BCE0C02A00A5 /* Editors */,
- DEA24DC5AC8325310FB40395 /* DataThreads */,
- A4E2CAAF556D557B24182414 /* RecordNode.cpp */,
- 3EAE25787DBFBA8EFC42A277 /* RecordNode.h */,
- 5522973FA48A13C6BED293FE /* SignalGenerator.cpp */,
- 23EAFAEA6457DB4E452F8715 /* SignalGenerator.h */,
- A98A22CF5F208ED6DBE08063 /* ResamplingNode.cpp */,
- C29BC68B2721471F32906FEB /* ResamplingNode.h */,
- B0E8FAD5AC445F612E3468B9 /* FilterNode.cpp */,
- 886E18520E8BD77234E1B686 /* FilterNode.h */,
- ECA6FDB1366BE7EC30F1539B /* SourceNode.cpp */,
- 154303EE3929F26B93792187 /* SourceNode.h */,
- 3AE038CACE48AF85C4FB1ED5 /* GenericProcessor.cpp */,
- 5B2A4DD7133CDE5AEC24CC07 /* GenericProcessor.h */,
- 555D34D0CD8776EE5996CC3A /* ProcessorGraph.cpp */,
- 0FDD7551AC98348D4A98ADC7 /* ProcessorGraph.h */,
+ 552D8D8CC92277F54C95F760 /* WiFiOutput */,
);
name = Processors;
sourceTree = "<group>";
@@ -2451,6 +2683,17 @@
name = juce_gui_basics;
sourceTree = "<group>";
};
+ 85403FACC153147273CEB933 /* FPGAOutput */ = {
+ isa = PBXGroup;
+ children = (
+ 4448875C40EAB061B2F8A289 /* FPGAOutput.cpp */,
+ 07A8ED74417654C40F9EFEFC /* FPGAOutput.h */,
+ AB4D72F040FF59BED08826EC /* FPGAOutputEditor.cpp */,
+ ED0955C4DE64766A7F5F96F2 /* FPGAOutputEditor.h */,
+ );
+ name = FPGAOutput;
+ sourceTree = "<group>";
+ };
85E7ADCD4C773A42B7F493E8 /* memory */ = {
isa = PBXGroup;
children = (
@@ -2756,6 +2999,28 @@
name = Fonts;
sourceTree = "<group>";
};
+ 9C7703C01E449614C1CD884D /* AudioNode */ = {
+ isa = PBXGroup;
+ children = (
+ DA4EAC64A750D0C3DEE83C5D /* AudioEditor.cpp */,
+ C15024C101ECE85FDDCD770D /* AudioEditor.h */,
+ 1F22CC8D992B8B49D57DDB3F /* AudioNode.cpp */,
+ 19B08AF9187EC45ECDE87602 /* AudioNode.h */,
+ );
+ name = AudioNode;
+ sourceTree = "<group>";
+ };
+ 9C8E3549A602E74DCFC44244 /* ArduinoOutput */ = {
+ isa = PBXGroup;
+ children = (
+ 95A64508FF3D0140D3001A19 /* ArduinoOutput.cpp */,
+ B410FE6CF1A561A1648343D6 /* ArduinoOutput.h */,
+ E850C14F13F9855CE1E14C1A /* ArduinoOutputEditor.cpp */,
+ 721B60E285ADAC54829028B9 /* ArduinoOutputEditor.h */,
+ );
+ name = ArduinoOutput;
+ sourceTree = "<group>";
+ };
9D44948383EAABF451302146 /* open-ephys */ = {
isa = PBXGroup;
children = (
@@ -2780,68 +3045,31 @@
9F16043BF599BCE0C02A00A5 /* Editors */ = {
isa = PBXGroup;
children = (
- 7B7819A5759B54D91E334447 /* LfpTriggeredAverageEditor.cpp */,
- 2196ED9DD4262C60135E77F5 /* LfpTriggeredAverageEditor.h */,
- 07BEF02C2B930DF7847C2921 /* SerialInputEditor.cpp */,
- 39D2C460FE587C5F564495A0 /* SerialInputEditor.h */,
- 28CCF04CCC028BAE0AEE5840 /* ElectrodeButtons.cpp */,
- 15870472BA2B1779521A21BD /* ElectrodeButtons.h */,
- B083B1375828610D55F12CF3 /* ChannelMappingEditor.cpp */,
- E442E1FA7B58BFF6F1D8CBD8 /* ChannelMappingEditor.h */,
- 4B0097003751A59A11FA8C5B /* FileReaderEditor.cpp */,
- 3067867C8C0F6CF6F086A6FC /* FileReaderEditor.h */,
- 75B1E4EFCDA9A506CFEDB09F /* PhaseDetectorEditor.cpp */,
- 748AF0975561FFFE51DF5F58 /* PhaseDetectorEditor.h */,
- 25A9484825F1B93ABC0E577F /* PulsePalOutputEditor.cpp */,
- 00A54510EFB9B0966D0B430C /* PulsePalOutputEditor.h */,
- 45D78C8EF660EECE64BAA33F /* RHD2000Editor.cpp */,
- BBCDE855BD0A58D3779D96A8 /* RHD2000Editor.h */,
- 1552007C6C6AF750278C5BE5 /* RecordControlEditor.cpp */,
- 0B2B7732073D56E484950C8D /* RecordControlEditor.h */,
- 9C39C584DA6F507E773687EE /* ReferenceNodeEditor.cpp */,
- 1C93ECD2B04F39923E66B529 /* ReferenceNodeEditor.h */,
- C5ABE6BDCA91410BA92A7BD9 /* ResamplingNodeEditor.cpp */,
- 0CCE619599DB39323E49FF3C /* ResamplingNodeEditor.h */,
- 169F1B20FC9FFE88C53D2735 /* FPGAOutputEditor.cpp */,
- 92528D6653802FACF658D8EA /* FPGAOutputEditor.h */,
- 1AD76E8111A738A8F3717060 /* ArduinoOutputEditor.cpp */,
- 8B9C0831BE4E09B7C0078B7E /* ArduinoOutputEditor.h */,
E216D095C98F850A5FB6FB0F /* ChannelSelector.cpp */,
70F06DBCA3948BCC1062E36F /* ChannelSelector.h */,
- 46E3A634686BFEF787229582 /* ParameterEditor.cpp */,
- 8B745839B225E44C9EB5C6FA /* ParameterEditor.h */,
- 1EC95CD1D830F6D85ADB3B9D /* SpikeDisplayEditor.cpp */,
- 25ABEB43042E98C668A16432 /* SpikeDisplayEditor.h */,
- CAA3B9396EA62166234DAEF1 /* VisualizerEditor.cpp */,
- B23E6EBB5F99CF7FC72FAC4E /* VisualizerEditor.h */,
- 29FD7B383C5DDACAA7B8DFD3 /* MergerEditor.cpp */,
- FC887C6CD74FE33F8BA784A6 /* MergerEditor.h */,
- 04C6B933E1603B4D0916570D /* ImageIcon.cpp */,
- C51CD15B311D0AAC08D0B908 /* ImageIcon.h */,
- C79249376E3FDF10615E16EA /* WiFiOutputEditor.cpp */,
- BA2923571505AD47CA1EF878 /* WiFiOutputEditor.h */,
- 70151263C4CB8A4F79431E11 /* EventNodeEditor.cpp */,
- 985F2B5047476B272B1A4BD4 /* EventNodeEditor.h */,
- 9136BD46BE1E28A96FBBD440 /* SignalGeneratorEditor.cpp */,
- 265EDA19C88E74249FD66609 /* SignalGeneratorEditor.h */,
- 8A91849BE6B96EB8C0663469 /* LfpDisplayEditor.cpp */,
- E594A85A291E0625E0410A85 /* LfpDisplayEditor.h */,
- 6328434A329C353DB8D9512C /* SourceNodeEditor.cpp */,
- 028D4D3C0862B4B1312E2395 /* SourceNodeEditor.h */,
- D51315B4241B019BE43EE4F1 /* SplitterEditor.cpp */,
- CCC20313AD0D0993F9EDD1B3 /* SplitterEditor.h */,
- A252FE4E6A360CBC4AF694B3 /* SpikeDetectorEditor.cpp */,
- 83E5EA2AA0CB928889AC80AB /* SpikeDetectorEditor.h */,
- 10BE33089BA6F3468F36CD6C /* AudioEditor.cpp */,
- A0E3B98412D88921BB0AA58E /* AudioEditor.h */,
- D90290A0AA2C36CE757E46D5 /* FilterEditor.cpp */,
- 49FA151B1837E543D18858EB /* FilterEditor.h */,
+ 28CCF04CCC028BAE0AEE5840 /* ElectrodeButtons.cpp */,
+ 15870472BA2B1779521A21BD /* ElectrodeButtons.h */,
D3AE8303545E28D793312F46 /* GenericEditor.cpp */,
984BC60C0AFF3EDED692FA01 /* GenericEditor.h */,
+ 04C6B933E1603B4D0916570D /* ImageIcon.cpp */,
+ C51CD15B311D0AAC08D0B908 /* ImageIcon.h */,
+ CAA3B9396EA62166234DAEF1 /* VisualizerEditor.cpp */,
+ B23E6EBB5F99CF7FC72FAC4E /* VisualizerEditor.h */,
);
name = Editors;
sourceTree = "<group>";
};
+ A1678CA8F8E882F5D7EFDB3E /* Merger */ = {
+ isa = PBXGroup;
+ children = (
+ 07B84F46CF90D04BB6B673C5 /* Merger.cpp */,
+ CA50A6F43BD78D01A8BE974B /* Merger.h */,
+ BAA5B3AD1A27F8C4D37A6869 /* MergerEditor.cpp */,
+ 8C639E4F97B7D6070028623A /* MergerEditor.h */,
+ );
+ name = Merger;
+ sourceTree = "<group>";
+ };
A7589AF92E6E958E1F866761 /* Source */ = {
isa = PBXGroup;
children = (
@@ -2888,6 +3116,17 @@
name = juce_video;
sourceTree = "<group>";
};
+ AE49B2C17B100D5B4F81F694 /* EventNode */ = {
+ isa = PBXGroup;
+ children = (
+ 2592795DB135E0F2C04406F3 /* EventNode.cpp */,
+ 10AC8A3D981DAE425D24F9F1 /* EventNode.h */,
+ F6BE430A8D1C6240286ED75B /* EventNodeEditor.cpp */,
+ 51BB55D1CE1667CD340E8358 /* EventNodeEditor.h */,
+ );
+ name = EventNode;
+ sourceTree = "<group>";
+ };
AF98861ADFF70900F6FD1833 /* scanning */ = {
isa = PBXGroup;
children = (
@@ -2910,6 +3149,17 @@
name = Network;
sourceTree = "<group>";
};
+ B17425A884659AB7B5FDCDD0 /* SpikeDetector */ = {
+ isa = PBXGroup;
+ children = (
+ 89CDE7ED25D0EB7452486E85 /* SpikeDetector.cpp */,
+ 13A33B5CF55BDF7BDC9D1D0C /* SpikeDetector.h */,
+ D0F10367EBD3945780342A37 /* SpikeDetectorEditor.cpp */,
+ 811A8689009F6FBEE2168F96 /* SpikeDetectorEditor.h */,
+ );
+ name = SpikeDetector;
+ sourceTree = "<group>";
+ };
B324A7959C768520ED46A064 /* native */ = {
isa = PBXGroup;
children = (
@@ -2933,6 +3183,15 @@
name = native;
sourceTree = "<group>";
};
+ B3EC4C17E1555DCD89B1B62C /* Channel */ = {
+ isa = PBXGroup;
+ children = (
+ FA8CC6FD54A9F20DA755F2EA /* Channel.cpp */,
+ 74BAC33D6BC1D961F04DCC72 /* Channel.h */,
+ );
+ name = Channel;
+ sourceTree = "<group>";
+ };
B49948DDB0E13018A81FFF94 /* containers */ = {
isa = PBXGroup;
children = (
@@ -2960,6 +3219,17 @@
name = containers;
sourceTree = "<group>";
};
+ B59685FA20FE7A2DC1FF65C0 /* PhaseDetector */ = {
+ isa = PBXGroup;
+ children = (
+ 4F10D1D2F5ED2E7F9A997D4C /* PhaseDetector.cpp */,
+ 35BB20110BAC6346AA605BF9 /* PhaseDetector.h */,
+ 3FE8C41480F07050CC21635F /* PhaseDetectorEditor.cpp */,
+ 31FB49244DF85E2ACCFBDF2B /* PhaseDetectorEditor.h */,
+ );
+ name = PhaseDetector;
+ sourceTree = "<group>";
+ };
B872BDEA72D05524E71AFE06 /* javascript */ = {
isa = PBXGroup;
children = (
@@ -2991,53 +3261,6 @@
name = misc;
sourceTree = "<group>";
};
- BCD632E634E0F8A50827F9B6 /* Dsp */ = {
- isa = PBXGroup;
- children = (
- 1989E86F8DFDE34887AC0326 /* Bessel.cpp */,
- 29D7893C278FFE00782637B6 /* Bessel.h */,
- 22801F75289646F6A85E5583 /* Biquad.cpp */,
- 361D8C54B3E54766CBC48046 /* Biquad.h */,
- B47B3368AA1A182B0CA1AB26 /* Butterworth.cpp */,
- 6D59D5780ECD2CC9703CB499 /* Butterworth.h */,
- 09BCBD414282A3AA4F66A3A5 /* Cascade.cpp */,
- E8174B3346AA69361BF73AE1 /* Cascade.h */,
- AC2CFF4DA5CE431FCC628BA3 /* ChebyshevI.cpp */,
- EC780F52ABBD7317A5CE2F33 /* ChebyshevI.h */,
- B767A249792EB15A87054409 /* ChebyshevII.cpp */,
- 9CEDA04DB321755AF74D6FAF /* ChebyshevII.h */,
- E8480C4ED7F9579F6172F7B5 /* Common.h */,
- D8D895B3AD895C6E7FD446BF /* Custom.cpp */,
- 3063CF211ABB734A9FD452EC /* Custom.h */,
- 2B93450006102A0093F5EACB /* Design.cpp */,
- 7ACB1CB66D69738904358F43 /* Design.h */,
- E90FCB43DA2FF766597DA75E /* Documentation.cpp */,
- 1086169B0EE86E04B64575C2 /* Dsp.h */,
- 392408C1943AC6234BAAC743 /* Elliptic.cpp */,
- A95D898F0998F4609E992B5F /* Elliptic.h */,
- 587FCA2485B9C89C2A99C23A /* Filter.cpp */,
- C39772F796D85E8FE98474D5 /* Filter.h */,
- 38313692308D501E4CADF1D5 /* Layout.h */,
- C4B0DF8094C90543A65E03E3 /* Legendre.cpp */,
- 4939A8B8300394AAD0926C0B /* Legendre.h */,
- A41C5A4CD5CF8EEFF993A8B1 /* MathSupplement.h */,
- 3F6C67E29CDEDF2EF61C054F /* Param.cpp */,
- C3BD84D9B090F98DD09F5958 /* Params.h */,
- 65312FAD0900119CDF6CF414 /* PoleFilter.cpp */,
- 5A8D46BEB81DDF24462E3D92 /* PoleFilter.h */,
- 9A21A229CFACC67E31F4F727 /* RBJ.cpp */,
- E44B26F5D97CB483242DE05B /* RBJ.h */,
- 3F69480D6145C77992FA59BA /* RootFinder.cpp */,
- 7EFF8622168303A4391D6CAE /* RootFinder.h */,
- F0CA3600E09054D7DB3B0067 /* SmoothedFilter.h */,
- C1CB526B75E406851FA918C6 /* State.cpp */,
- 9428D7423971764AC0BA9CB7 /* State.h */,
- 6340B1D2FECEABBBE6C0DE28 /* Types.h */,
- CFB86C1F2A6076ADC36692AA /* Utilities.h */,
- );
- name = Dsp;
- sourceTree = "<group>";
- };
C451728043944D40C69166C1 /* Audio */ = {
isa = PBXGroup;
children = (
@@ -3047,18 +3270,25 @@
name = Audio;
sourceTree = "<group>";
};
+ C451C93CE8C359C1A4BD23C7 /* SerialInput */ = {
+ isa = PBXGroup;
+ children = (
+ 4C01F867D43DF7B1D98B887E /* SerialInput.cpp */,
+ 12F73B770FFDEA8696710E86 /* SerialInput.h */,
+ 6D38B76951D31D96F1B71E0F /* SerialInputEditor.cpp */,
+ 27FB12D08303BEC9CD15E317 /* SerialInputEditor.h */,
+ );
+ name = SerialInput;
+ sourceTree = "<group>";
+ };
C4B85C0286AC2510730355E3 /* Visualization */ = {
isa = PBXGroup;
children = (
+ 66463AB11EA4D6341C32F27E /* DataWindow.cpp */,
+ FFFBDB9A00240D797751FEE6 /* DataWindow.h */,
5894D40A0E8FA6E9B3EBF9D9 /* SpikeObject.cpp */,
ADCB42E4C5641007A4B78025 /* SpikeObject.h */,
- A7D4C9E3ED3763847C087F46 /* SpikeDisplayCanvas.cpp */,
- 4E6EE225098D32E7D5DE60B2 /* SpikeDisplayCanvas.h */,
215E1BD79B5870D5356810F0 /* Visualizer.h */,
- 66463AB11EA4D6341C32F27E /* DataWindow.cpp */,
- FFFBDB9A00240D797751FEE6 /* DataWindow.h */,
- 4A94E809624F99387E600399 /* LfpDisplayCanvas.cpp */,
- 12B5DDCB6E5ECD93A4C55BB5 /* LfpDisplayCanvas.h */,
);
name = Visualization;
sourceTree = "<group>";
@@ -3114,6 +3344,17 @@
name = misc;
sourceTree = "<group>";
};
+ CB7739DB9922F30C029B2A02 /* SourceNode */ = {
+ isa = PBXGroup;
+ children = (
+ 242B80832B3C8FF4F3CC18F1 /* SourceNode.cpp */,
+ A7BF9312D81FF5DCEAB8AC47 /* SourceNode.h */,
+ 326F8386BCD4E4189D0CC00F /* SourceNodeEditor.cpp */,
+ B5D805B691B1C38D959F6B54 /* SourceNodeEditor.h */,
+ );
+ name = SourceNode;
+ sourceTree = "<group>";
+ };
CDD260628D8AFE969895A610 /* text */ = {
isa = PBXGroup;
children = (
@@ -3159,6 +3400,21 @@
name = colour;
sourceTree = "<group>";
};
+ D3F8D770C9E60B5BA2CCBC68 /* SpikeSorter */ = {
+ isa = PBXGroup;
+ children = (
+ 92F51CF12E0C21F38D5E61E8 /* SpikeSortBoxes.cpp */,
+ FBF2BF7B97C2FF8557CF39E6 /* SpikeSortBoxes.h */,
+ D45EF9812FBC284BCB7EEB7C /* SpikeSorter.cpp */,
+ 78400C0FB79F6B0D1A27A6D4 /* SpikeSorter.h */,
+ 6DF620BE87EA9F7F25A1144A /* SpikeSorterCanvas.cpp */,
+ B66B8CFF619CBF2D66F031E3 /* SpikeSorterCanvas.h */,
+ F46365D8E42099148B843C95 /* SpikeSorterEditor.cpp */,
+ F753A8E9CE0C51998066EA07 /* SpikeSorterEditor.h */,
+ );
+ name = SpikeSorter;
+ sourceTree = "<group>";
+ };
D6EA061B97C039BF4BAAB444 /* effects */ = {
isa = PBXGroup;
children = (
@@ -3288,6 +3544,12 @@
DEA24DC5AC8325310FB40395 /* DataThreads */ = {
isa = PBXGroup;
children = (
+ 80A19F69D9B205BCC0ABA293 /* EcubeEditor.cpp */,
+ C7D36423459E79F3F462A421 /* EcubeEditor.h */,
+ FAFA97C9B7C7635298E274DB /* RHD2000Editor.cpp */,
+ FD9EE3CDFCEE08859781DA65 /* RHD2000Editor.h */,
+ AFBAE04615D379A18B133090 /* EcubeThread.cpp */,
+ A166A3013C7AF1BCCA050367 /* EcubeThread.h */,
EBA825AF6FDB51EBA368CB8D /* rhythm-api */,
A3FB0EA0264580F6B00D993B /* RHD2000Thread.cpp */,
23A6BA852B71DAAF3F709428 /* RHD2000Thread.h */,
@@ -3312,6 +3574,17 @@
name = documents;
sourceTree = "<group>";
};
+ E2624A71F15AE5C96B34505B /* Splitter */ = {
+ isa = PBXGroup;
+ children = (
+ B9068FF0373FA8321C33C42C /* Splitter.cpp */,
+ E1E9FAB63BD90C10F2BEF74C /* Splitter.h */,
+ 607CC2BFCB0622B3348FA1AD /* SplitterEditor.cpp */,
+ 385F66531BAB16BA754E901E /* SplitterEditor.h */,
+ );
+ name = Splitter;
+ sourceTree = "<group>";
+ };
E2F864696FA2DDDAD60C7E83 /* juce_audio_formats */ = {
isa = PBXGroup;
children = (
@@ -3403,6 +3676,28 @@
name = "rhythm-api";
sourceTree = "<group>";
};
+ EC06134D54CF6C9870853ED6 /* PulsePalOutput */ = {
+ isa = PBXGroup;
+ children = (
+ 183701B0661B6FE784C6A75F /* PulsePalOutput.cpp */,
+ E1A51630F1C6E392EBEDD469 /* PulsePalOutput.h */,
+ DE0EA2212323DEFEBA3D078F /* PulsePalOutputEditor.cpp */,
+ 623684E73A6005C7BB2717A6 /* PulsePalOutputEditor.h */,
+ );
+ name = PulsePalOutput;
+ sourceTree = "<group>";
+ };
+ F12EEDE785E2D38F654AE1B1 /* MessageCenter */ = {
+ isa = PBXGroup;
+ children = (
+ BC1543B1F822FEEDCB9AC26D /* MessageCenter.cpp */,
+ 8F058EA775325F9C5650944E /* MessageCenter.h */,
+ AEFC8A0A9A35F50E59FDE678 /* MessageCenterEditor.cpp */,
+ 9EB2B238943CCC32B587881C /* MessageCenterEditor.h */,
+ );
+ name = MessageCenter;
+ sourceTree = "<group>";
+ };
F196226BFBA15D76688C61C6 /* juce_cryptography */ = {
isa = PBXGroup;
children = (
@@ -3428,6 +3723,26 @@
name = juce_events;
sourceTree = "<group>";
};
+ F8338C653582335A30EADE40 /* EventDetector */ = {
+ isa = PBXGroup;
+ children = (
+ C5C843AC83A36BE87E3F97F8 /* EventDetector.cpp */,
+ 9410421AB1CD18F754FD4A9E /* EventDetector.h */,
+ );
+ name = EventDetector;
+ sourceTree = "<group>";
+ };
+ F884A8B18F33A6FFE6809906 /* RecordControl */ = {
+ isa = PBXGroup;
+ children = (
+ E849E3966302E7D4D06712F5 /* RecordControl.cpp */,
+ E0AB41DFF4A382B93658F53E /* RecordControl.h */,
+ 56242BB33B53F133914517BD /* RecordControlEditor.cpp */,
+ F379BA0589FB65817B721314 /* RecordControlEditor.h */,
+ );
+ name = RecordControl;
+ sourceTree = "<group>";
+ };
FA0E0597ED415901958AD5AE /* Products */ = {
isa = PBXGroup;
children = (
@@ -3550,81 +3865,18 @@
files = (
14BDAEA656AAFA60334CC55C /* AccessClass.cpp in Sources */,
C853FCE2F6C91B3643322CF0 /* PracticalSocket.cpp in Sources */,
- 00A0D05390DB9F2B74DDAA78 /* Bessel.cpp in Sources */,
- 4AD3281B0CCF122A25E33667 /* Biquad.cpp in Sources */,
- F505DF3C2BA492B5A2F28D05 /* Butterworth.cpp in Sources */,
- B226387EB0FCE3BE6773FF61 /* Cascade.cpp in Sources */,
- B3B08037F49EC7540586828F /* ChebyshevI.cpp in Sources */,
- B6C73582C501D8C3C03A4860 /* ChebyshevII.cpp in Sources */,
- 129ADFA8B25DE091AFA2D9E3 /* Custom.cpp in Sources */,
- 285FF16149C85F2793EBCBAE /* Design.cpp in Sources */,
- D19775DC99C67AD20F98EF17 /* Documentation.cpp in Sources */,
- CB470032BC92A30906C96258 /* Elliptic.cpp in Sources */,
- 4FEC4EC2796E37A3B11B50B9 /* Filter.cpp in Sources */,
- A44FEA7117CFE2F06B9889B4 /* Legendre.cpp in Sources */,
- C0E966234C8AF91C19CF6EA4 /* Param.cpp in Sources */,
- BBE886EA79C50D0D68A5A753 /* PoleFilter.cpp in Sources */,
- 9D17609E468FC65EB70ED7F4 /* RBJ.cpp in Sources */,
- AE06672D2CBF8F64465B2126 /* RootFinder.cpp in Sources */,
- 69630D3ECA4D6014EE3734CD /* State.cpp in Sources */,
0AE243437B40602D35435C32 /* AudioComponent.cpp in Sources */,
- B89453078EB0A8107F39EDF3 /* SerialInput.cpp in Sources */,
- F25EC78DCCC9CCEE805AE011 /* FileReader.cpp in Sources */,
- EA6A1BDDF81818D516B93DD6 /* ChannelMappingNode.cpp in Sources */,
- 7077270005BA819E3D5654B5 /* PulsePalOutput.cpp in Sources */,
- FDCFDC9CC6D7A82131190FB0 /* ReferenceNode.cpp in Sources */,
- 11D82BA398E9433440B76F66 /* PhaseDetector.cpp in Sources */,
- EDEE5E21F0C9BDB7DB796083 /* AudioResamplingNode.cpp in Sources */,
- C6F08BF3EF53274A42BB88EB /* Channel.cpp in Sources */,
- 790911EDF00A4BF77327D99A /* PulsePal.cpp in Sources */,
- DDDFAE2042D8AD20CC78CE3C /* ofArduino.cpp in Sources */,
- 582C224AA50C9395810C8E27 /* ofSerial.cpp in Sources */,
- 704484388E63CDE33491E1AB /* EventDetector.cpp in Sources */,
- 1691EC0AC4C7083D65B925E2 /* FPGAOutput.cpp in Sources */,
- AD032CEA5DBE4D4C76D3D2D1 /* ArduinoOutput.cpp in Sources */,
- 9E8544C3983B3203530B5A49 /* Parameter.cpp in Sources */,
- 685151FF4FB872983524A5C3 /* SpikeDisplayNode.cpp in Sources */,
- 627C7B84F5FD275FAF43663A /* WiFiOutput.cpp in Sources */,
- C59764685E62E7C4D323F84B /* LfpDisplayNode.cpp in Sources */,
- E4DA638CDD4DD574A6CD843E /* RecordControl.cpp in Sources */,
- 2B4A80DCF867DC025C21966B /* Merger.cpp in Sources */,
- D0E9E20F9D8FDA700BB6D820 /* Splitter.cpp in Sources */,
- 19BB86C918F89D1377F8A0E1 /* SpikeObject.cpp in Sources */,
- EE56A6BBBFA4A27A4BCF7279 /* SpikeDisplayCanvas.cpp in Sources */,
- 1B620FC17AAECA4C5DE741E2 /* DataWindow.cpp in Sources */,
- 5570682BF1A39FB3E3FAC182 /* LfpDisplayCanvas.cpp in Sources */,
- ED8CB527B27C67E9E4DA027C /* SpikeDetector.cpp in Sources */,
- DE758AF46844DF951655966C /* AudioNode.cpp in Sources */,
- 80E5365461A5A7A32C48C563 /* EventNode.cpp in Sources */,
- DD77A0AB68C932F294B753C2 /* LfpTriggeredAverageEditor.cpp in Sources */,
- A3CF90DE56808A47519FC101 /* SerialInputEditor.cpp in Sources */,
- 029C3B11BE586DA100895A60 /* ElectrodeButtons.cpp in Sources */,
- 52E0D9DC7F5C4703257D8BEB /* ChannelMappingEditor.cpp in Sources */,
- EA46BA3970E958013FF85690 /* FileReaderEditor.cpp in Sources */,
- 88B896EB9793E0C44410D981 /* PhaseDetectorEditor.cpp in Sources */,
- 6272253EB0051C1F215CD4D9 /* PulsePalOutputEditor.cpp in Sources */,
- AF26E388BF6536803E762CB1 /* RHD2000Editor.cpp in Sources */,
- 0CEFF81CD8861F959DB13362 /* RecordControlEditor.cpp in Sources */,
- 352F3875222B1D233013AAF9 /* ReferenceNodeEditor.cpp in Sources */,
- F0EC60AEFAFF3D289F8110BE /* ResamplingNodeEditor.cpp in Sources */,
- C3406F00595AEFF068EDB162 /* FPGAOutputEditor.cpp in Sources */,
- 3A2E957EB8D117C535F119E9 /* ArduinoOutputEditor.cpp in Sources */,
- 52AE3F7AEED81BA9ED5C4830 /* ChannelSelector.cpp in Sources */,
- 3933895CA488855A23943F61 /* ParameterEditor.cpp in Sources */,
- AF67C81811F18FCE6AA9C895 /* SpikeDisplayEditor.cpp in Sources */,
- AA16BE5A6BBD024C8FCFCDA8 /* VisualizerEditor.cpp in Sources */,
- 992137E90F9D41522FD56875 /* MergerEditor.cpp in Sources */,
- 7F188166D38DA7FB23311413 /* ImageIcon.cpp in Sources */,
- A454D138EC507C01D299AB0F /* WiFiOutputEditor.cpp in Sources */,
- 784125612E2B7AC6CD89D835 /* EventNodeEditor.cpp in Sources */,
- 21539690A9A5DD20AFAF41D3 /* SignalGeneratorEditor.cpp in Sources */,
- 0836C50051EF59BF91D7B12D /* LfpDisplayEditor.cpp in Sources */,
- 55CD2E9F373B69C3E8363B78 /* SourceNodeEditor.cpp in Sources */,
- 2B29D90B985E9EB788472EFE /* SplitterEditor.cpp in Sources */,
- D0873C347977633B4421B94D /* SpikeDetectorEditor.cpp in Sources */,
- BF3254F07C15D467D6DB3FEF /* AudioEditor.cpp in Sources */,
- 6029B20DF2BD523AC0F78896 /* FilterEditor.cpp in Sources */,
- 6702EEA4E99D503C0EE933C4 /* GenericEditor.cpp in Sources */,
+ 55227B30828797A8DCB0B91D /* ArduinoOutput.cpp in Sources */,
+ 527EB48A4A9C2F4FF1BC4FB2 /* ArduinoOutputEditor.cpp in Sources */,
+ 8352817FEDC7542D3E65B49A /* AudioEditor.cpp in Sources */,
+ 44DB81313BDDF1ECB6AD33FE /* AudioNode.cpp in Sources */,
+ 64FC0EA0C132341C1C3E98E1 /* AudioResamplingNode.cpp in Sources */,
+ C45009DBCD71E9E234BFCE97 /* Channel.cpp in Sources */,
+ E6038800731F7C747D181A51 /* ChannelMappingEditor.cpp in Sources */,
+ FFCA1C44C024BCA1878F49FE /* ChannelMappingNode.cpp in Sources */,
+ C9678AAD3560E89CCE8FA529 /* EcubeEditor.cpp in Sources */,
+ B88BCF2522AD283DDC0B4F16 /* RHD2000Editor.cpp in Sources */,
+ 5C597B1A42C8CB3940CBDDA9 /* EcubeThread.cpp in Sources */,
89FCE8890946693CD5FC4A70 /* okFrontPanelDLL.cpp in Sources */,
C9AC286A46B3A1318F298DEF /* rhd2000datablock.cpp in Sources */,
DA836EC803E4FF4EDEBE6386 /* rhd2000evalboard.cpp in Sources */,
@@ -3634,13 +3886,92 @@
6B67D7B6301182C7621294B6 /* FPGAThread.cpp in Sources */,
FAE745870674A07A65690433 /* DataBuffer.cpp in Sources */,
24CC7E9A7E87F762D4AB0467 /* DataThread.cpp in Sources */,
- 66F3B79BDF9BFB631D7E3584 /* RecordNode.cpp in Sources */,
- 996F9E4989EB47941D8100DA /* SignalGenerator.cpp in Sources */,
- BE54C019A73BBAE05BFD7D17 /* ResamplingNode.cpp in Sources */,
- 5AE42EF7A713B1EC0ACF9EDE /* FilterNode.cpp in Sources */,
- 71111DE81104B1536ECB6DFB /* SourceNode.cpp in Sources */,
- 85A60568B3DC342C76B4E679 /* GenericProcessor.cpp in Sources */,
- 8A5BACA019DA9B0EFAD5CE93 /* ProcessorGraph.cpp in Sources */,
+ 9252537C12447F047243DEE9 /* Bessel.cpp in Sources */,
+ B081F3F4FA6D8C35E2EEE778 /* Biquad.cpp in Sources */,
+ 7398C5E00B9093F78C697706 /* Butterworth.cpp in Sources */,
+ 2416F9D9E4D89A706514FC25 /* Cascade.cpp in Sources */,
+ 66507CA290B4730FE77B7ABC /* ChebyshevI.cpp in Sources */,
+ 031957790B288A3ABED26A87 /* ChebyshevII.cpp in Sources */,
+ 07868E8D0C1A0BB3A94E87AB /* Custom.cpp in Sources */,
+ 2B90821075BA2DF4565644D4 /* Design.cpp in Sources */,
+ E18FD0CB21E95A6E81286611 /* Documentation.cpp in Sources */,
+ AD938EF313A6AC879CA4BED7 /* Elliptic.cpp in Sources */,
+ 56C42E2DD0B4905488948796 /* Filter.cpp in Sources */,
+ DC1D91C883B609DBEF7A4235 /* Legendre.cpp in Sources */,
+ 8ED8249C48B1BB53F617A789 /* Param.cpp in Sources */,
+ AD588F05EDFE59FD48A3F9B8 /* PoleFilter.cpp in Sources */,
+ 6C0A7B0D658E39227319148F /* RBJ.cpp in Sources */,
+ 469E1EF233BCD61F44687C0F /* RootFinder.cpp in Sources */,
+ 411543734DA2029A3030D903 /* State.cpp in Sources */,
+ 52AE3F7AEED81BA9ED5C4830 /* ChannelSelector.cpp in Sources */,
+ 029C3B11BE586DA100895A60 /* ElectrodeButtons.cpp in Sources */,
+ 6702EEA4E99D503C0EE933C4 /* GenericEditor.cpp in Sources */,
+ 7F188166D38DA7FB23311413 /* ImageIcon.cpp in Sources */,
+ AA16BE5A6BBD024C8FCFCDA8 /* VisualizerEditor.cpp in Sources */,
+ 44D7379F739C19C7B78B95F5 /* EventDetector.cpp in Sources */,
+ F4808CE43E77C8EC285A39DC /* EventNode.cpp in Sources */,
+ D1F0765F1497D5228ABCA63C /* EventNodeEditor.cpp in Sources */,
+ 68EBB4CEB08BD3DEAC450B95 /* FileReader.cpp in Sources */,
+ 24800AF87AD21CE652552EDE /* FileReaderEditor.cpp in Sources */,
+ 0203D029CE7420984F737E51 /* FilterEditor.cpp in Sources */,
+ 3BAE3A1FD0834E798B8602BF /* FilterNode.cpp in Sources */,
+ 1A415CE073017DDDA7F2E234 /* FPGAOutput.cpp in Sources */,
+ 63B3CC385B0988C7ABA3B07B /* FPGAOutputEditor.cpp in Sources */,
+ B49852F77C0C392C159A1914 /* GenericProcessor.cpp in Sources */,
+ 9F431DA23C92CA0F8E3A2A28 /* LfpDisplayCanvas.cpp in Sources */,
+ BFFD23BD72ECEC9E54936061 /* LfpDisplayEditor.cpp in Sources */,
+ FA882EEE408CBBDC7BD90F14 /* LfpDisplayNode.cpp in Sources */,
+ 0E62780F9978861D5D2BCF71 /* LfpTriggeredAverageCanvas.cpp in Sources */,
+ E13848868678C0655147C59D /* LfpTriggeredAverageEditor.cpp in Sources */,
+ 01646F263C203BB412580CB8 /* LfpTriggeredAverageNode.cpp in Sources */,
+ 6D00BABD3FE1AA0EAA267C1C /* Merger.cpp in Sources */,
+ AD371C6F383F03EF392B6581 /* MergerEditor.cpp in Sources */,
+ 4EF2825142BBAA76FD55FE26 /* MessageCenter.cpp in Sources */,
+ 3B05807D08271664EEC4977C /* MessageCenterEditor.cpp in Sources */,
+ F2586A2DCEF44961AEA247E8 /* ParameterEditor.cpp in Sources */,
+ 3E7939ABAA984EE8BFC8CEDD /* Parameter.cpp in Sources */,
+ C9F9AE4CB2009DFFD7D7A67F /* PhaseDetector.cpp in Sources */,
+ C59D4B35ABCF3BE6D0A0665E /* PhaseDetectorEditor.cpp in Sources */,
+ BAC379C03C2E7995F2393EF5 /* ProcessorGraph.cpp in Sources */,
+ 82160D8346428EC9F641FAD6 /* PulsePalOutput.cpp in Sources */,
+ 15C43033BAB27663B4226539 /* PulsePalOutputEditor.cpp in Sources */,
+ BD091BDB684BB28E0F953B8B /* RecordControl.cpp in Sources */,
+ 395F1886484CA576C63B7112 /* RecordControlEditor.cpp in Sources */,
+ E1247DDF1C88D99691499E52 /* EngineConfigWindow.cpp in Sources */,
+ 0E036CEA1285F9B162A07356 /* HDF5FileFormat.cpp in Sources */,
+ A4A2DF3FA65BAB4322FE5E74 /* HDF5Recording.cpp in Sources */,
+ 0A8D8C2D02858F0F08356EA9 /* OriginalRecording.cpp in Sources */,
+ AEDA8F23648EABF79215B566 /* RecordEngine.cpp in Sources */,
+ B806F023DF817BB2D59FEEFD /* RecordNode.cpp in Sources */,
+ A5A90525A975EC3B1E40086E /* ReferenceNode.cpp in Sources */,
+ 79FC643530710BF2885932C1 /* ReferenceNodeEditor.cpp in Sources */,
+ 69B5045877D4C674E8A4967F /* ResamplingNode.cpp in Sources */,
+ 97105BCBC5B1BE4E86D48899 /* ResamplingNodeEditor.cpp in Sources */,
+ 790911EDF00A4BF77327D99A /* PulsePal.cpp in Sources */,
+ DDDFAE2042D8AD20CC78CE3C /* ofArduino.cpp in Sources */,
+ 582C224AA50C9395810C8E27 /* ofSerial.cpp in Sources */,
+ 846EF153B423E09BC5BFDAFD /* SerialInput.cpp in Sources */,
+ 66308BBB808DBB920AB3CBAB /* SerialInputEditor.cpp in Sources */,
+ 1D0D651813C4A1DCBE811242 /* SignalGenerator.cpp in Sources */,
+ BFAC940E5771516A92281F96 /* SignalGeneratorEditor.cpp in Sources */,
+ 7B69E73AF79BB2B10BAA559C /* SourceNode.cpp in Sources */,
+ 74A14124A3B0C5FB13583B57 /* SourceNodeEditor.cpp in Sources */,
+ 6D8A9AC5ECC0F2D26304849E /* SpikeDetector.cpp in Sources */,
+ AFC645928D103D9FA51481CA /* SpikeDetectorEditor.cpp in Sources */,
+ 84BB28DDFF317D243DDC7FA2 /* SpikeDisplayCanvas.cpp in Sources */,
+ A14CA9089A09267E95C93E1D /* SpikeDisplayEditor.cpp in Sources */,
+ DED0D08EFA1EFF4F1D4D3BEF /* SpikeDisplayNode.cpp in Sources */,
+ 9635A954DB8FDD6E19B977C3 /* SpikeSortBoxes.cpp in Sources */,
+ B9718533E5255AEC3F6C7B2F /* SpikeSorter.cpp in Sources */,
+ 58EC9F834448B334410385EB /* SpikeSorterCanvas.cpp in Sources */,
+ 027A01C5025DEA9DAFF605D3 /* SpikeSorterEditor.cpp in Sources */,
+ 4910924155F31E96B9BAD050 /* Splitter.cpp in Sources */,
+ 66DE280C28A69B2002C40A86 /* SplitterEditor.cpp in Sources */,
+ 1B620FC17AAECA4C5DE741E2 /* DataWindow.cpp in Sources */,
+ 19BB86C918F89D1377F8A0E1 /* SpikeObject.cpp in Sources */,
+ AEE1F2B70ED51F7AFEF4E93B /* WiFiOutput.cpp in Sources */,
+ 74D0CA6935D890153FB58C56 /* WiFiOutputEditor.cpp in Sources */,
+ 8F39AD3F7938EFE82D06E89F /* EcubeDialogComponent.cpp in Sources */,
BA608CEFC85F7AB9E30E0EB3 /* CustomArrowButton.cpp in Sources */,
D499273B65D901D0A101CAAA /* GraphViewer.cpp in Sources */,
95AE939ADE096394CCD2526F /* EditorViewportButtons.cpp in Sources */,
@@ -3650,7 +3981,6 @@
9A80E3D1D1758A31D2169497 /* CustomLookAndFeel.cpp in Sources */,
F4397EAE00E0B9F96C8B6C07 /* InfoLabel.cpp in Sources */,
09673DA3B4D6EA61DEFC0C46 /* DataViewport.cpp in Sources */,
- 591CED1277A8C945EF60841C /* MessageCenter.cpp in Sources */,
58D3FF3B1F462634167BDFB5 /* ControlPanel.cpp in Sources */,
3162B66BC8118715AAA527D7 /* UIComponent.cpp in Sources */,
004E78BC139419671A9EA137 /* MainWindow.cpp in Sources */,
@@ -3690,7 +4020,6 @@
GCC_WARN_NON_VIRTUAL_DESTRUCTOR = YES;
GCC_WARN_TYPECHECK_CALLS_TO_PRINTF = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
- MACOSX_DEPLOYMENT_TARGET = 10.8;
PRODUCT_NAME = "open-ephys";
WARNING_CFLAGS = "-Wreorder";
ZERO_LINK = NO;
@@ -3704,22 +4033,33 @@
CLANG_LINK_OBJC_RUNTIME = NO;
COMBINE_HIDPI_IMAGES = YES;
CONFIGURATION_BUILD_DIR = "$(PROJECT_DIR)/build/$(CONFIGURATION)";
+ DEAD_CODE_STRIPPING = YES;
GCC_GENERATE_DEBUGGING_SYMBOLS = NO;
GCC_OPTIMIZATION_LEVEL = 3;
GCC_PREPROCESSOR_DEFINITIONS = (
"_NDEBUG=1",
"NDEBUG=1",
"JUCER_XCODE_MAC_F6D2F4CF=1",
+ "JUCE_APP_VERSION=0.3.2",
+ "JUCE_APP_VERSION_HEX=0x302",
);
GCC_SYMBOLS_PRIVATE_EXTERN = YES;
GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
HEADER_SEARCH_PATHS = (
../../JuceLibraryCode,
+ /opt/local/include,
+ ../../JuceLibraryCode/modules,
"$(inherited)",
);
INFOPLIST_FILE = Info.plist;
INSTALL_PATH = "$(HOME)/Applications";
+ LIBRARY_SEARCH_PATHS = /opt/local/lib;
MACOSX_DEPLOYMENT_TARGET_ppc = 10.4;
+ OTHER_LDFLAGS = (
+ "-lhdf5",
+ "-lhdf5_cpp",
+ );
+ SDKROOT = macosx10.8;
SDKROOT_ppc = macosx10.5;
};
name = Release;
@@ -3738,16 +4078,25 @@
"_DEBUG=1",
"DEBUG=1",
"JUCER_XCODE_MAC_F6D2F4CF=1",
+ "JUCE_APP_VERSION=0.3.2",
+ "JUCE_APP_VERSION_HEX=0x302",
);
GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
HEADER_SEARCH_PATHS = (
../../JuceLibraryCode,
+ /opt/local/include,
+ ../../JuceLibraryCode/modules,
"$(inherited)",
);
INFOPLIST_FILE = Info.plist;
INSTALL_PATH = "$(HOME)/Applications";
+ LIBRARY_SEARCH_PATHS = /opt/local/lib;
MACOSX_DEPLOYMENT_TARGET_ppc = 10.4;
- ONLY_ACTIVE_ARCH = YES;
+ OTHER_LDFLAGS = (
+ "-lhdf5",
+ "-lhdf5_cpp",
+ );
+ SDKROOT = macosx10.8;
SDKROOT_ppc = macosx10.5;
};
name = Debug;
@@ -3766,7 +4115,6 @@
GCC_WARN_NON_VIRTUAL_DESTRUCTOR = YES;
GCC_WARN_TYPECHECK_CALLS_TO_PRINTF = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
- MACOSX_DEPLOYMENT_TARGET = 10.8;
ONLY_ACTIVE_ARCH = YES;
PRODUCT_NAME = "open-ephys";
WARNING_CFLAGS = "-Wreorder";
diff --git a/Builds/VisualStudio2012/open-ephys.v12.suo b/Builds/VisualStudio2012/open-ephys.v12.suo
new file mode 100644
index 0000000000000000000000000000000000000000..1e2cb6bfd97ff8ac68505d3b65464004fe4ca9c9
Binary files /dev/null and b/Builds/VisualStudio2012/open-ephys.v12.suo differ
diff --git a/Builds/VisualStudio2012/open-ephys.vcxproj b/Builds/VisualStudio2012/open-ephys.vcxproj
index 38df4a45bda9a1fd2ce1e41404814a8ffe20ccb4..d738d24725b8566be4b2e931e65aaacfcf044a28 100644
--- a/Builds/VisualStudio2012/open-ephys.vcxproj
+++ b/Builds/VisualStudio2012/open-ephys.vcxproj
@@ -27,27 +27,23 @@
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseOfMfc>false</UseOfMfc>
- <CharacterSet>MultiByte</CharacterSet>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseOfMfc>false</UseOfMfc>
- <CharacterSet>MultiByte</CharacterSet>
<WholeProgramOptimization>true</WholeProgramOptimization>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseOfMfc>false</UseOfMfc>
- <CharacterSet>MultiByte</CharacterSet>
<PlatformToolset>v110</PlatformToolset>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
<PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release64|x64'" Label="Configuration">
<ConfigurationType>Application</ConfigurationType>
<UseOfMfc>false</UseOfMfc>
- <CharacterSet>MultiByte</CharacterSet>
<WholeProgramOptimization>true</WholeProgramOptimization>
<PlatformToolset>v110</PlatformToolset>
<PlatformToolset>v110</PlatformToolset>
@@ -66,19 +62,19 @@
<OutDir Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">.\Debug\bin\</OutDir>
<TargetName Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">open-ephys</TargetName>
<GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</GenerateManifest>
- <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">$(LibraryPath);../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Debug</LibraryPath>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">$(LibraryPath);../../Resources/windows-libs/HDF5/lib/x86</LibraryPath>
<OutDir Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">.\Release\bin\</OutDir>
<TargetName Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">open-ephys</TargetName>
<GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</GenerateManifest>
- <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">$(LibraryPath);../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Release</LibraryPath>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">$(LibraryPath);../../Resources/windows-libs/HDF5/lib/x86</LibraryPath>
<OutDir Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">.\Debug64\bin\</OutDir>
<TargetName Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">open-ephys</TargetName>
<GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">true</GenerateManifest>
- <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">$(LibraryPath);../../Resources/ZeroMQ/lib_x64;../../Resources/Google Protocols/vsprojects/x64/Debug</LibraryPath>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">$(LibraryPath);../../Resources/windows-libs/HDF5/lib/x64</LibraryPath>
<OutDir Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">.\Release64\bin\</OutDir>
<TargetName Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">open-ephys</TargetName>
<GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">true</GenerateManifest>
- <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">$(LibraryPath);../../Resources/ZeroMQ/lib_x64;../../Resources/Google Protocols/vsprojects/x64/Release</LibraryPath>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">$(LibraryPath);../../Resources/windows-libs/HDF5/lib/x64</LibraryPath>
<PlatformToolset>v110</PlatformToolset>
</PropertyGroup>
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
@@ -92,8 +88,8 @@
<ClCompile>
<Optimization>Disabled</Optimization>
<DebugInformationFormat>EditAndContinue</DebugInformationFormat>
- <AdditionalIncludeDirectories>..\..\JuceLibraryCode;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>WIN32;_WINDOWS;DEBUG;_DEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;../../Resources/windows-libs/HDF5/include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;DEBUG;_DEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
<RuntimeTypeInfo>true</RuntimeTypeInfo>
<PrecompiledHeader/>
@@ -116,16 +112,16 @@
<SubSystem>Windows</SubSystem>
<TargetMachine>MachineX86</TargetMachine>
<ImageHasSafeExceptionHandlers>false</ImageHasSafeExceptionHandlers>
- <AdditionalLibraryDirectories>../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Debug;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalLibraryDirectories>../../Resources/windows-libs/HDF5/lib/x86;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<LargeAddressAware>true</LargeAddressAware>
- <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
</Link>
<Bscmake>
<SuppressStartupBanner>true</SuppressStartupBanner>
<OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
</Bscmake>
<PostBuildEvent>
- <Command>copy ..\..\Resources\DLLs\okFrontPanel.dll .\Debug\bin</Command>
+ <Command>copy "..\..\Resources\DLLs\*.dll" "$(OutDir)"</Command>
</PostBuildEvent>
</ItemDefinitionGroup>
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
@@ -138,8 +134,8 @@
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<ClCompile>
<Optimization>Full</Optimization>
- <AdditionalIncludeDirectories>..\..\JuceLibraryCode;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>WIN32;_WINDOWS;NDEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;../../Resources/windows-libs/HDF5/include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;NDEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
<RuntimeTypeInfo>true</RuntimeTypeInfo>
<PrecompiledHeader/>
@@ -163,16 +159,16 @@
<TargetMachine>MachineX86</TargetMachine>
<OptimizeReferences>true</OptimizeReferences>
<EnableCOMDATFolding>true</EnableCOMDATFolding>
- <AdditionalLibraryDirectories>../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Release;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalLibraryDirectories>../../Resources/windows-libs/HDF5/lib/x86;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<LargeAddressAware>true</LargeAddressAware>
- <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
</Link>
<Bscmake>
<SuppressStartupBanner>true</SuppressStartupBanner>
<OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
</Bscmake>
<PostBuildEvent>
- <Command>copy ..\..\Resources\DLLs\okFrontPanel.dll .\Release\bin</Command>
+ <Command>copy "..\..\Resources\DLLs\*.dll" "$(OutDir)"</Command>
</PostBuildEvent>
</ItemDefinitionGroup>
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug64|x64'">
@@ -186,8 +182,8 @@
<ClCompile>
<Optimization>Disabled</Optimization>
<DebugInformationFormat>ProgramDatabase</DebugInformationFormat>
- <AdditionalIncludeDirectories>..\..\JuceLibraryCode;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>WIN32;_WINDOWS;DEBUG;_DEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;../../Resources/windows-libs/HDF5/include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;DEBUG;_DEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
<RuntimeTypeInfo>true</RuntimeTypeInfo>
<PrecompiledHeader/>
@@ -208,16 +204,16 @@
<GenerateDebugInformation>true</GenerateDebugInformation>
<ProgramDatabaseFile>$(IntDir)\open-ephys.pdb</ProgramDatabaseFile>
<SubSystem>Windows</SubSystem>
- <AdditionalLibraryDirectories>../../Resources/ZeroMQ/lib_x64;../../Resources/Google Protocols/vsprojects/x64/Debug;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalLibraryDirectories>../../Resources/windows-libs/HDF5/lib/x64;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<LargeAddressAware>true</LargeAddressAware>
- <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
</Link>
<Bscmake>
<SuppressStartupBanner>true</SuppressStartupBanner>
<OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
</Bscmake>
<PostBuildEvent>
- <Command>copy ..\..\Resources\DLLs\Win64\okFrontPanel.dll .\Debug64\bin</Command>
+ <Command>copy "..\..\Resources\DLLs\Win64\*.dll" "$(OutDir)"</Command>
</PostBuildEvent>
</ItemDefinitionGroup>
<ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release64|x64'">
@@ -230,8 +226,8 @@
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<ClCompile>
<Optimization>Full</Optimization>
- <AdditionalIncludeDirectories>..\..\JuceLibraryCode;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
- <PreprocessorDefinitions>WIN32;_WINDOWS;NDEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;../../Resources/windows-libs/HDF5/include;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;NDEBUG;NOMINMAX;JUCER_VS2012_78A501F=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
<RuntimeLibrary>MultiThreaded</RuntimeLibrary>
<RuntimeTypeInfo>true</RuntimeTypeInfo>
<PrecompiledHeader/>
@@ -254,96 +250,33 @@
<SubSystem>Windows</SubSystem>
<OptimizeReferences>true</OptimizeReferences>
<EnableCOMDATFolding>true</EnableCOMDATFolding>
- <AdditionalLibraryDirectories>../../Resources/ZeroMQ/lib_x64;../../Resources/Google Protocols/vsprojects/x64/Release;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <AdditionalLibraryDirectories>../../Resources/windows-libs/HDF5/lib/x64;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
<LargeAddressAware>true</LargeAddressAware>
- <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
</Link>
<Bscmake>
<SuppressStartupBanner>true</SuppressStartupBanner>
<OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
</Bscmake>
<PostBuildEvent>
- <Command>copy ..\..\Resources\DLLs\Win64\okFrontPanel.dll .\Release64\bin</Command>
+ <Command>copy "..\..\Resources\DLLs\Win64\*.dll" "$(OutDir)"</Command>
</PostBuildEvent>
</ItemDefinitionGroup>
<ItemGroup>
<ClCompile Include="..\..\Source\AccessClass.cpp"/>
<ClCompile Include="..\..\Source\Network\PracticalSocket.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Bessel.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Biquad.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Butterworth.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Cascade.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\ChebyshevI.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\ChebyshevII.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Custom.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Design.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Documentation.cpp"/>
- <ClCompile Include="..\..\Source\Dsp\Elliptic.cpp"/>
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- <ClCompile Include="..\..\Source\Dsp\State.cpp"/>
<ClCompile Include="..\..\Source\Audio\AudioComponent.cpp"/>
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- <ClCompile Include="..\..\Source\Processors\Editors\SerialInputEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\ElectrodeButtons.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\ChannelMappingEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\FileReaderEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\PhaseDetectorEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\PulsePalOutputEditor.cpp"/>
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- <ClCompile Include="..\..\Source\Processors\Editors\AudioEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\FilterEditor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\Editors\GenericEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioResamplingNode\AudioResamplingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Channel\Channel.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\RHD2000Editor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeThread.cpp"/>
<ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\okFrontPanelDLL.cpp"/>
<ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000datablock.cpp"/>
<ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000evalboard.cpp"/>
@@ -353,13 +286,92 @@
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<ClCompile Include="..\..\Source\Processors\DataThreads\DataBuffer.cpp"/>
<ClCompile Include="..\..\Source\Processors\DataThreads\DataThread.cpp"/>
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- <ClCompile Include="..\..\Source\Processors\SourceNode.cpp"/>
- <ClCompile Include="..\..\Source\Processors\GenericProcessor.cpp"/>
- <ClCompile Include="..\..\Source\Processors\ProcessorGraph.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Bessel.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Biquad.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Butterworth.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Cascade.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\ChebyshevI.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\ChebyshevII.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Custom.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Design.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Documentation.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Elliptic.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Filter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Legendre.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Param.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\PoleFilter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\RBJ.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\RootFinder.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\State.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ChannelSelector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ElectrodeButtons.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\GenericEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ImageIcon.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\VisualizerEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventDetector\EventDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventNode\EventNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventNode\EventNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FileReader\FileReader.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FileReader\FileReaderEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FilterNode\FilterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FilterNode\FilterNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FPGAOutput\FPGAOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FPGAOutput\FPGAOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\GenericProcessor\GenericProcessor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageNode.cpp"/>
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+ <ClCompile Include="..\..\Source\Processors\Merger\MergerEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\MessageCenter\MessageCenter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\MessageCenter\MessageCenterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Parameter\ParameterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Parameter\Parameter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PhaseDetector\PhaseDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PhaseDetector\PhaseDetectorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ProcessorGraph\ProcessorGraph.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordControl\RecordControl.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordControl\RecordControlEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\EngineConfigWindow.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\HDF5FileFormat.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\HDF5Recording.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\OriginalRecording.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\RecordEngine.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\RecordNode.cpp"/>
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+ <ClCompile Include="..\..\Source\Processors\ReferenceNode\ReferenceNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ResamplingNode\ResamplingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ResamplingNode\ResamplingNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\PulsePal.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\ofArduino.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\ofSerial.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SerialInput\SerialInput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SerialInput\SerialInputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SignalGenerator\SignalGenerator.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SignalGenerator\SignalGeneratorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SourceNode\SourceNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SourceNode\SourceNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDetector\SpikeDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDetector\SpikeDetectorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSortBoxes.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorterCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Splitter\Splitter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Splitter\SplitterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Visualization\DataWindow.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Visualization\SpikeObject.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\WiFiOutput\WiFiOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\WiFiOutput\WiFiOutputEditor.cpp"/>
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<ClCompile Include="..\..\Source\UI\CustomArrowButton.cpp"/>
<ClCompile Include="..\..\Source\UI\GraphViewer.cpp"/>
<ClCompile Include="..\..\Source\UI\EditorViewportButtons.cpp"/>
@@ -369,7 +381,6 @@
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<ClCompile Include="..\..\Source\UI\InfoLabel.cpp"/>
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<ClCompile Include="..\..\Source\UI\ControlPanel.cpp"/>
<ClCompile Include="..\..\Source\UI\UIComponent.cpp"/>
<ClCompile Include="..\..\Source\MainWindow.cpp"/>
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- <ClInclude Include="..\..\Source\Processors\Editors\SpikeDetectorEditor.h"/>
- <ClInclude Include="..\..\Source\Processors\Editors\AudioEditor.h"/>
- <ClInclude Include="..\..\Source\Processors\Editors\FilterEditor.h"/>
- <ClInclude Include="..\..\Source\Processors\Editors\GenericEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutput.h"/>
+ <ClInclude Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutputEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\AudioNode\AudioEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\AudioNode\AudioNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\AudioResamplingNode\AudioResamplingNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\Channel\Channel.h"/>
+ <ClInclude Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\DataThreads\EcubeEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\DataThreads\RHD2000Editor.h"/>
+ <ClInclude Include="..\..\Source\Processors\DataThreads\EcubeThread.h"/>
<ClInclude Include="..\..\Source\Processors\DataThreads\rhythm-api\okFrontPanelDLL.h"/>
<ClInclude Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000datablock.h"/>
<ClInclude Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000evalboard.h"/>
@@ -1592,13 +1532,100 @@
<ClInclude Include="..\..\Source\Processors\DataThreads\FPGAThread.h"/>
<ClInclude Include="..\..\Source\Processors\DataThreads\DataBuffer.h"/>
<ClInclude Include="..\..\Source\Processors\DataThreads\DataThread.h"/>
- <ClInclude Include="..\..\Source\Processors\RecordNode.h"/>
- <ClInclude Include="..\..\Source\Processors\SignalGenerator.h"/>
- <ClInclude Include="..\..\Source\Processors\ResamplingNode.h"/>
- <ClInclude Include="..\..\Source\Processors\FilterNode.h"/>
- <ClInclude Include="..\..\Source\Processors\SourceNode.h"/>
- <ClInclude Include="..\..\Source\Processors\GenericProcessor.h"/>
- <ClInclude Include="..\..\Source\Processors\ProcessorGraph.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Bessel.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Biquad.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Butterworth.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Cascade.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\ChebyshevI.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\ChebyshevII.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Common.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Custom.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Design.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Dsp.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Elliptic.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Filter.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Layout.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Legendre.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\MathSupplement.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Params.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\PoleFilter.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\RBJ.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\RootFinder.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\SmoothedFilter.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\State.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Types.h"/>
+ <ClInclude Include="..\..\Source\Processors\Dsp\Utilities.h"/>
+ <ClInclude Include="..\..\Source\Processors\Editors\ChannelSelector.h"/>
+ <ClInclude Include="..\..\Source\Processors\Editors\ElectrodeButtons.h"/>
+ <ClInclude Include="..\..\Source\Processors\Editors\GenericEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Editors\ImageIcon.h"/>
+ <ClInclude Include="..\..\Source\Processors\Editors\VisualizerEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\EventDetector\EventDetector.h"/>
+ <ClInclude Include="..\..\Source\Processors\EventNode\EventNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\EventNode\EventNodeEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\FileReader\FileReader.h"/>
+ <ClInclude Include="..\..\Source\Processors\FileReader\FileReaderEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\FilterNode\FilterEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\FilterNode\FilterNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\FPGAOutput\FPGAOutput.h"/>
+ <ClInclude Include="..\..\Source\Processors\FPGAOutput\FPGAOutputEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\GenericProcessor\GenericProcessor.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayCanvas.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageCanvas.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\Merger\Merger.h"/>
+ <ClInclude Include="..\..\Source\Processors\Merger\MergerEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\MessageCenter\MessageCenter.h"/>
+ <ClInclude Include="..\..\Source\Processors\MessageCenter\MessageCenterEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Parameter\ParameterEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Parameter\Parameter.h"/>
+ <ClInclude Include="..\..\Source\Processors\PhaseDetector\PhaseDetector.h"/>
+ <ClInclude Include="..\..\Source\Processors\PhaseDetector\PhaseDetectorEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\ProcessorGraph\ProcessorGraph.h"/>
+ <ClInclude Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutput.h"/>
+ <ClInclude Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutputEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordControl\RecordControl.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordControl\RecordControlEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\EngineConfigWindow.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\HDF5FileFormat.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\HDF5Recording.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\OriginalRecording.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\RecordEngine.h"/>
+ <ClInclude Include="..\..\Source\Processors\RecordNode\RecordNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\ReferenceNode\ReferenceNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\ReferenceNode\ReferenceNodeEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\ResamplingNode\ResamplingNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\ResamplingNode\ResamplingNodeEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Serial\PulsePal.h"/>
+ <ClInclude Include="..\..\Source\Processors\Serial\ofArduino.h"/>
+ <ClInclude Include="..\..\Source\Processors\Serial\ofConstants.h"/>
+ <ClInclude Include="..\..\Source\Processors\Serial\ofSerial.h"/>
+ <ClInclude Include="..\..\Source\Processors\SerialInput\SerialInput.h"/>
+ <ClInclude Include="..\..\Source\Processors\SerialInput\SerialInputEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\SignalGenerator\SignalGenerator.h"/>
+ <ClInclude Include="..\..\Source\Processors\SignalGenerator\SignalGeneratorEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\SourceNode\SourceNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\SourceNode\SourceNodeEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeDetector\SpikeDetector.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeDetector\SpikeDetectorEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayCanvas.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayNode.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSortBoxes.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorter.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorterCanvas.h"/>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorterEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Splitter\Splitter.h"/>
+ <ClInclude Include="..\..\Source\Processors\Splitter\SplitterEditor.h"/>
+ <ClInclude Include="..\..\Source\Processors\Visualization\DataWindow.h"/>
+ <ClInclude Include="..\..\Source\Processors\Visualization\SpikeObject.h"/>
+ <ClInclude Include="..\..\Source\Processors\Visualization\Visualizer.h"/>
+ <ClInclude Include="..\..\Source\Processors\WiFiOutput\WiFiOutput.h"/>
+ <ClInclude Include="..\..\Source\Processors\WiFiOutput\WiFiOutputEditor.h"/>
+ <ClInclude Include="..\..\Source\UI\EcubeDialogComponent.h"/>
<ClInclude Include="..\..\Source\UI\CustomArrowButton.h"/>
<ClInclude Include="..\..\Source\UI\GraphViewer.h"/>
<ClInclude Include="..\..\Source\UI\EditorViewportButtons.h"/>
@@ -1608,7 +1635,6 @@
<ClInclude Include="..\..\Source\UI\CustomLookAndFeel.h"/>
<ClInclude Include="..\..\Source\UI\InfoLabel.h"/>
<ClInclude Include="..\..\Source\UI\DataViewport.h"/>
- <ClInclude Include="..\..\Source\UI\MessageCenter.h"/>
<ClInclude Include="..\..\Source\UI\ControlPanel.h"/>
<ClInclude Include="..\..\Source\UI\UIComponent.h"/>
<ClInclude Include="..\..\Source\MainWindow.h"/>
diff --git a/Builds/VisualStudio2012/open-ephys.vcxproj.filters b/Builds/VisualStudio2012/open-ephys.vcxproj.filters
index 8f6fab367965183adc4db029ba5ed9419bf7acaa..b1b6225b788b6cf1a2a571b39ee915de31a62f31 100644
--- a/Builds/VisualStudio2012/open-ephys.vcxproj.filters
+++ b/Builds/VisualStudio2012/open-ephys.vcxproj.filters
@@ -26,26 +26,26 @@
<Filter Include="open-ephys\Source\Network">
<UniqueIdentifier>{F426EB08-DE72-34FB-F5F1-D8D077A9C12D}</UniqueIdentifier>
</Filter>
- <Filter Include="open-ephys\Source\Dsp">
- <UniqueIdentifier>{A6A61A5B-F355-7BD1-D31D-6FFCFA565F59}</UniqueIdentifier>
- </Filter>
<Filter Include="open-ephys\Source\Audio">
<UniqueIdentifier>{DC7BD6F0-2EB6-B7BF-B84C-66EF8EE93230}</UniqueIdentifier>
</Filter>
<Filter Include="open-ephys\Source\Processors">
<UniqueIdentifier>{3DDEC88C-BAA5-2DDA-A59F-0FB74070AB82}</UniqueIdentifier>
</Filter>
- <Filter Include="open-ephys\Source\Processors\Serial">
- <UniqueIdentifier>{58FEEDBF-D0C4-32AB-FC79-00C612892B6D}</UniqueIdentifier>
+ <Filter Include="open-ephys\Source\Processors\ArduinoOutput">
+ <UniqueIdentifier>{26D17857-B604-0035-CFB5-C3FFD320BD99}</UniqueIdentifier>
</Filter>
- <Filter Include="open-ephys\Source\Processors\Utilities">
- <UniqueIdentifier>{9465E55A-A9FC-7BED-5EC5-A0596662B8FD}</UniqueIdentifier>
+ <Filter Include="open-ephys\Source\Processors\AudioNode">
+ <UniqueIdentifier>{117683A8-B332-1FBB-1FA0-8C6C7D231B69}</UniqueIdentifier>
</Filter>
- <Filter Include="open-ephys\Source\Processors\Visualization">
- <UniqueIdentifier>{851942D5-FED6-A7B2-6FAB-C278A247FE7A}</UniqueIdentifier>
+ <Filter Include="open-ephys\Source\Processors\AudioResamplingNode">
+ <UniqueIdentifier>{BB0D2303-17CA-2E39-9765-7A701B2AE2F6}</UniqueIdentifier>
</Filter>
- <Filter Include="open-ephys\Source\Processors\Editors">
- <UniqueIdentifier>{E65874A6-23B2-9D76-B12A-15730E2192BC}</UniqueIdentifier>
+ <Filter Include="open-ephys\Source\Processors\Channel">
+ <UniqueIdentifier>{7374BFF8-0BFC-382A-1DC3-F4B934CF25BC}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\ChannelMappingNode">
+ <UniqueIdentifier>{CFA4FC13-DA1B-011C-D897-0FF0B7D1301B}</UniqueIdentifier>
</Filter>
<Filter Include="open-ephys\Source\Processors\DataThreads">
<UniqueIdentifier>{AA123918-8642-2612-7B72-C63DA032271B}</UniqueIdentifier>
@@ -53,6 +53,96 @@
<Filter Include="open-ephys\Source\Processors\DataThreads\rhythm-api">
<UniqueIdentifier>{EF1534B7-662E-9844-D11F-1D1003B02E4A}</UniqueIdentifier>
</Filter>
+ <Filter Include="open-ephys\Source\Processors\Dsp">
+ <UniqueIdentifier>{9C1026A0-8DA9-8D8D-AC1D-22880764350D}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Editors">
+ <UniqueIdentifier>{E65874A6-23B2-9D76-B12A-15730E2192BC}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\EventDetector">
+ <UniqueIdentifier>{FDD5B79A-1AA4-7745-BB6E-E09A6DFC328E}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\EventNode">
+ <UniqueIdentifier>{3BDCC6CD-7B1F-ED1C-7442-F2B0CD1A86C8}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\FileReader">
+ <UniqueIdentifier>{59F490B2-F5D9-601B-01AE-368632E3C9D7}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\FilterNode">
+ <UniqueIdentifier>{189BB62E-5852-A4F3-AC79-704FAAE02870}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\FPGAOutput">
+ <UniqueIdentifier>{995BE2D8-55CB-BBA8-8155-2EFE5F03F143}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\GenericProcessor">
+ <UniqueIdentifier>{223ADE1C-7B16-1075-5D22-4771767BF960}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\LfpDisplayNode">
+ <UniqueIdentifier>{6F781BCA-7DB6-E933-BDDB-D2EAA51713B0}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\LfpTriggeredAverageNode">
+ <UniqueIdentifier>{1150A21B-5E97-AC73-C141-CEF966829E71}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Merger">
+ <UniqueIdentifier>{144C1CD2-E387-1D24-EFF3-C5238BD84182}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\MessageCenter">
+ <UniqueIdentifier>{BC6AF028-A7C2-7914-7DCA-A3F145C7DF5F}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Parameter">
+ <UniqueIdentifier>{1A622D55-9AE3-2A07-5AC5-237BFA2278DD}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\PhaseDetector">
+ <UniqueIdentifier>{C9BE6651-5B98-F5D3-047F-E021EE143E00}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\ProcessorGraph">
+ <UniqueIdentifier>{6A13AFE9-16FA-463C-B758-8702F1EA4F8B}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\PulsePalOutput">
+ <UniqueIdentifier>{75B4E291-E4EA-812C-4963-E760993C4B0D}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\RecordControl">
+ <UniqueIdentifier>{2DF3655B-132B-CD8A-6483-C2F4C74C6D42}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\RecordNode">
+ <UniqueIdentifier>{185877A6-9FE6-DD2E-BC41-93EE3C608CFC}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\ReferenceNode">
+ <UniqueIdentifier>{763A6B4C-B0C6-BA22-7FAB-0DEEF8D66097}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\ResamplingNode">
+ <UniqueIdentifier>{3135385A-1E61-FB08-3E00-D5C52DFB1BC9}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Serial">
+ <UniqueIdentifier>{58FEEDBF-D0C4-32AB-FC79-00C612892B6D}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SerialInput">
+ <UniqueIdentifier>{AC7C03CC-B7F3-EF83-085E-AB894624CAFC}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SignalGenerator">
+ <UniqueIdentifier>{98080044-1FF9-22CA-70D0-745170D30FD6}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SourceNode">
+ <UniqueIdentifier>{83A3043C-94AE-ADED-C72B-394EB4BAE6B4}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SpikeDetector">
+ <UniqueIdentifier>{2D5F5EA7-422D-75BE-FA59-68F2C55B89E8}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SpikeDisplayNode">
+ <UniqueIdentifier>{818E5C85-5930-DC8D-A3C2-0443F4C35B47}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\SpikeSorter">
+ <UniqueIdentifier>{11B5BECA-5948-83BC-3C0F-DEB527800990}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Splitter">
+ <UniqueIdentifier>{2AAA8664-72AA-EC5C-92E2-3392067B058F}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\Visualization">
+ <UniqueIdentifier>{851942D5-FED6-A7B2-6FAB-C278A247FE7A}</UniqueIdentifier>
+ </Filter>
+ <Filter Include="open-ephys\Source\Processors\WiFiOutput">
+ <UniqueIdentifier>{F733C561-3FBD-E17D-CC23-601836ADF7E6}</UniqueIdentifier>
+ </Filter>
<Filter Include="open-ephys\Source\UI">
<UniqueIdentifier>{717A0FE3-E079-E4BD-8F50-15A1953825C5}</UniqueIdentifier>
</Filter>
@@ -361,278 +451,326 @@
<ClCompile Include="..\..\Source\Network\PracticalSocket.cpp">
<Filter>open-ephys\Source\Network</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Bessel.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Audio\AudioComponent.cpp">
+ <Filter>open-ephys\Source\Audio</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Biquad.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutput.cpp">
+ <Filter>open-ephys\Source\Processors\ArduinoOutput</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Butterworth.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutputEditor.cpp">
+ <Filter>open-ephys\Source\Processors\ArduinoOutput</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Cascade.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioEditor.cpp">
+ <Filter>open-ephys\Source\Processors\AudioNode</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\ChebyshevI.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioNode.cpp">
+ <Filter>open-ephys\Source\Processors\AudioNode</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\ChebyshevII.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\AudioResamplingNode\AudioResamplingNode.cpp">
+ <Filter>open-ephys\Source\Processors\AudioResamplingNode</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Custom.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\Channel\Channel.cpp">
+ <Filter>open-ephys\Source\Processors\Channel</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Design.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingEditor.cpp">
+ <Filter>open-ephys\Source\Processors\ChannelMappingNode</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Documentation.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingNode.cpp">
+ <Filter>open-ephys\Source\Processors\ChannelMappingNode</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Elliptic.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeEditor.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Filter.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\RHD2000Editor.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Legendre.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeThread.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\Param.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\okFrontPanelDLL.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads\rhythm-api</Filter>
+ </ClCompile>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000datablock.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads\rhythm-api</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\PoleFilter.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000evalboard.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads\rhythm-api</Filter>
+ </ClCompile>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000registers.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads\rhythm-api</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\RBJ.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\RHD2000Thread.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\RootFinder.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\FileReaderThread.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Dsp\State.cpp">
- <Filter>open-ephys\Source\Dsp</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\FPGAThread.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Audio\AudioComponent.cpp">
- <Filter>open-ephys\Source\Audio</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\DataBuffer.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Processors\SerialInput.cpp">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\DataThread.cpp">
+ <Filter>open-ephys\Source\Processors\DataThreads</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Processors\FileReader.cpp">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Bessel.cpp">
+ <Filter>open-ephys\Source\Processors\Dsp</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Processors\ChannelMappingNode.cpp">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Biquad.cpp">
+ <Filter>open-ephys\Source\Processors\Dsp</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Processors\PulsePalOutput.cpp">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Butterworth.cpp">
+ <Filter>open-ephys\Source\Processors\Dsp</Filter>
</ClCompile>
- <ClCompile Include="..\..\Source\Processors\ReferenceNode.cpp">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Cascade.cpp">
+ <Filter>open-ephys\Source\Processors\Dsp</Filter>
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- <Filter>open-ephys\Source\Processors</Filter>
+ <ClInclude Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayEditor.h">
+ <Filter>open-ephys\Source\Processors\SpikeDisplayNode</Filter>
</ClInclude>
- <ClInclude Include="..\..\Source\Processors\SourceNode.h">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClInclude Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayNode.h">
+ <Filter>open-ephys\Source\Processors\SpikeDisplayNode</Filter>
</ClInclude>
- <ClInclude Include="..\..\Source\Processors\GenericProcessor.h">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSortBoxes.h">
+ <Filter>open-ephys\Source\Processors\SpikeSorter</Filter>
</ClInclude>
- <ClInclude Include="..\..\Source\Processors\ProcessorGraph.h">
- <Filter>open-ephys\Source\Processors</Filter>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorter.h">
+ <Filter>open-ephys\Source\Processors\SpikeSorter</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorterCanvas.h">
+ <Filter>open-ephys\Source\Processors\SpikeSorter</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\SpikeSorter\SpikeSorterEditor.h">
+ <Filter>open-ephys\Source\Processors\SpikeSorter</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\Splitter\Splitter.h">
+ <Filter>open-ephys\Source\Processors\Splitter</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\Splitter\SplitterEditor.h">
+ <Filter>open-ephys\Source\Processors\Splitter</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\Visualization\DataWindow.h">
+ <Filter>open-ephys\Source\Processors\Visualization</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\Visualization\SpikeObject.h">
+ <Filter>open-ephys\Source\Processors\Visualization</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\Visualization\Visualizer.h">
+ <Filter>open-ephys\Source\Processors\Visualization</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\WiFiOutput\WiFiOutput.h">
+ <Filter>open-ephys\Source\Processors\WiFiOutput</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\Processors\WiFiOutput\WiFiOutputEditor.h">
+ <Filter>open-ephys\Source\Processors\WiFiOutput</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\Source\UI\EcubeDialogComponent.h">
+ <Filter>open-ephys\Source\UI</Filter>
</ClInclude>
<ClInclude Include="..\..\Source\UI\CustomArrowButton.h">
<Filter>open-ephys\Source\UI</Filter>
@@ -2235,9 +2418,6 @@
<ClInclude Include="..\..\Source\UI\DataViewport.h">
<Filter>open-ephys\Source\UI</Filter>
</ClInclude>
- <ClInclude Include="..\..\Source\UI\MessageCenter.h">
- <Filter>open-ephys\Source\UI</Filter>
- </ClInclude>
<ClInclude Include="..\..\Source\UI\ControlPanel.h">
<Filter>open-ephys\Source\UI</Filter>
</ClInclude>
diff --git a/Builds/VisualStudio2012/resources.rc b/Builds/VisualStudio2012/resources.rc
index 7e90b4e76da66c087a68622404d18c38082d4b83..37719a97bd794d32c5c0f172efaaf280f7267255 100644
--- a/Builds/VisualStudio2012/resources.rc
+++ b/Builds/VisualStudio2012/resources.rc
@@ -7,7 +7,7 @@
#include <windows.h>
VS_VERSION_INFO VERSIONINFO
-FILEVERSION 0,3,1,0
+FILEVERSION 0,3,2,0
BEGIN
BLOCK "StringFileInfo"
BEGIN
@@ -15,9 +15,9 @@ BEGIN
BEGIN
VALUE "CompanyName", "Open Ephys\0"
VALUE "FileDescription", "open-ephys\0"
- VALUE "FileVersion", "0.3.1\0"
+ VALUE "FileVersion", "0.3.2\0"
VALUE "ProductName", "open-ephys\0"
- VALUE "ProductVersion", "0.3.1\0"
+ VALUE "ProductVersion", "0.3.2\0"
END
END
diff --git a/Builds/VisualStudio2013/copydlls.cmd b/Builds/VisualStudio2013/copydlls.cmd
new file mode 100644
index 0000000000000000000000000000000000000000..9284f9c3085fceac7a98b3ab7c651b9b630b4a22
--- /dev/null
+++ b/Builds/VisualStudio2013/copydlls.cmd
@@ -0,0 +1,13 @@
+@echo off
+echo copy %2\okFrontPanel.dll %3
+copy %2\okFrontPanel.dll %3
+echo copy %1\hdf5.dll %3
+copy %1\hdf5.dll %3
+echo copy %1\hdf5_cpp.dll %3
+copy %1\hdf5_cpp.dll %3
+rem copy %1\szip.dll %3
+rem copy %1\zlib.dll %3
+
+
+
+echo copy ..\..\Resources\DLLs\Win64\okFrontPanel.dll .\Debug64\bin
\ No newline at end of file
diff --git a/Builds/VisualStudio2013/open-ephys.sln b/Builds/VisualStudio2013/open-ephys.sln
new file mode 100644
index 0000000000000000000000000000000000000000..da69c688136db3653983f2209d0483a528b88091
--- /dev/null
+++ b/Builds/VisualStudio2013/open-ephys.sln
@@ -0,0 +1,19 @@
+Microsoft Visual Studio Solution File, Format Version 11.00
+# Visual Studio 2013
+Project("{5A05F353-1D63-394C-DFB0-981BB2309002}") = "open-ephys", "open-ephys.vcxproj", "{9C924D66-7DEC-1AEF-B375-DB8666BFB909}"
+EndProject
+Global
+ GlobalSection(SolutionConfigurationPlatforms) = preSolution
+ Debug|Win32 = Debug|Win32
+ Release|Win32 = Release|Win32
+ EndGlobalSection
+ GlobalSection(ProjectConfigurationPlatforms) = postSolution
+ {9C924D66-7DEC-1AEF-B375-DB8666BFB909}.Debug|Win32.ActiveCfg = Debug|Win32
+ {9C924D66-7DEC-1AEF-B375-DB8666BFB909}.Debug|Win32.Build.0 = Debug|Win32
+ {9C924D66-7DEC-1AEF-B375-DB8666BFB909}.Release|Win32.ActiveCfg = Release|Win32
+ {9C924D66-7DEC-1AEF-B375-DB8666BFB909}.Release|Win32.Build.0 = Release|Win32
+ EndGlobalSection
+ GlobalSection(SolutionProperties) = preSolution
+ HideSolutionNode = FALSE
+ EndGlobalSection
+EndGlobal
diff --git a/Builds/VisualStudio2013/open-ephys.vcxproj b/Builds/VisualStudio2013/open-ephys.vcxproj
new file mode 100644
index 0000000000000000000000000000000000000000..f257d8927adcf1e5da3fafbc65e7e952fd212501
--- /dev/null
+++ b/Builds/VisualStudio2013/open-ephys.vcxproj
@@ -0,0 +1,2058 @@
+<?xml version="1.0" encoding="utf-8"?>
+
+<Project DefaultTargets="Build" ToolsVersion="12.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+ <ItemGroup Label="ProjectConfigurations">
+ <ProjectConfiguration Include="Debug|Win32">
+ <Configuration>Debug</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ <ProjectConfiguration Include="Release|Win32">
+ <Configuration>Release</Configuration>
+ <Platform>Win32</Platform>
+ </ProjectConfiguration>
+ </ItemGroup>
+ <PropertyGroup Label="Globals">
+ <ProjectGuid>{9C924D66-7DEC-1AEF-B375-DB8666BFB909}</ProjectGuid>
+ <PlatformToolset>v120</PlatformToolset>
+ </PropertyGroup>
+ <Import Project="$(VCTargetsPath)\Microsoft.Cpp.Default.props"/>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'" Label="Configuration">
+ <ConfigurationType>Application</ConfigurationType>
+ <UseOfMfc>false</UseOfMfc>
+ <PlatformToolset>v120</PlatformToolset>
+ </PropertyGroup>
+ <PropertyGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'" Label="Configuration">
+ <ConfigurationType>Application</ConfigurationType>
+ <UseOfMfc>false</UseOfMfc>
+ <WholeProgramOptimization>true</WholeProgramOptimization>
+ <PlatformToolset>v120</PlatformToolset>
+ </PropertyGroup>
+ <Import Project="$(VCTargetsPath)\Microsoft.Cpp.props"/>
+ <ImportGroup Label="ExtensionSettings"/>
+ <ImportGroup Label="PropertySheets">
+ <Import Project="$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props" Condition="exists('$(UserRootDir)\Microsoft.Cpp.$(Platform).user.props')"
+ Label="LocalAppDataPlatform"/>
+ </ImportGroup>
+ <PropertyGroup Label="UserMacros">
+ <PlatformToolset>v120</PlatformToolset>
+ </PropertyGroup>
+ <PropertyGroup>
+ <_ProjectFileVersion>10.0.30319.1</_ProjectFileVersion>
+ <OutDir Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">.\Debug\bin\</OutDir>
+ <TargetName Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">open-ephys</TargetName>
+ <GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">true</GenerateManifest>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">$(LibraryPath);../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Debug;$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib</LibraryPath>
+ <OutDir Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">.\Release\bin\</OutDir>
+ <TargetName Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">open-ephys</TargetName>
+ <GenerateManifest Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">true</GenerateManifest>
+ <LibraryPath Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">$(LibraryPath);$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib;../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Release</LibraryPath>
+ <PlatformToolset>v120</PlatformToolset>
+ </PropertyGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Debug|Win32'">
+ <Midl>
+ <PreprocessorDefinitions>_DEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MkTypLibCompatible>true</MkTypLibCompatible>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <TargetEnvironment>Win32</TargetEnvironment>
+ <HeaderFileName/>
+ </Midl>
+ <ClCompile>
+ <Optimization>Disabled</Optimization>
+ <DebugInformationFormat>EditAndContinue</DebugInformationFormat>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\include;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;DEBUG;_DEBUG;NOMINMAX;JUCER_VS2013_78A5020=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <RuntimeLibrary>MultiThreadedDebug</RuntimeLibrary>
+ <RuntimeTypeInfo>true</RuntimeTypeInfo>
+ <PrecompiledHeader/>
+ <AssemblerListingLocation>$(IntDir)\</AssemblerListingLocation>
+ <ObjectFileName>$(IntDir)\</ObjectFileName>
+ <ProgramDataBaseFileName>$(IntDir)\</ProgramDataBaseFileName>
+ <WarningLevel>Level4</WarningLevel>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ <FloatingPointModel>Fast</FloatingPointModel>
+ </ClCompile>
+ <ResourceCompile>
+ <PreprocessorDefinitions>_DEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ </ResourceCompile>
+ <Link>
+ <OutputFile>$(OutDir)\open-ephys.exe</OutputFile>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <IgnoreSpecificDefaultLibraries>libcmt.lib; msvcrt.lib;;%(IgnoreSpecificDefaultLibraries)</IgnoreSpecificDefaultLibraries>
+ <GenerateDebugInformation>true</GenerateDebugInformation>
+ <ProgramDatabaseFile>$(IntDir)\open-ephys.pdb</ProgramDatabaseFile>
+ <SubSystem>Windows</SubSystem>
+ <TargetMachine>MachineX86</TargetMachine>
+ <ImageHasSafeExceptionHandlers>false</ImageHasSafeExceptionHandlers>
+ <AdditionalLibraryDirectories>../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Debug;$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <LargeAddressAware>true</LargeAddressAware>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ </Link>
+ <Bscmake>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
+ </Bscmake>
+ <PostBuildEvent>
+ <Command>call "$(SolutionDir)\copydlls.cmd" "$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\bin" "$(SolutionDir)\..\..\Resources\DLLs" "$(OutDir)"</Command>
+ </PostBuildEvent>
+ </ItemDefinitionGroup>
+ <ItemDefinitionGroup Condition="'$(Configuration)|$(Platform)'=='Release|Win32'">
+ <Midl>
+ <PreprocessorDefinitions>NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <MkTypLibCompatible>true</MkTypLibCompatible>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <TargetEnvironment>Win32</TargetEnvironment>
+ <HeaderFileName/>
+ </Midl>
+ <ClCompile>
+ <Optimization>Full</Optimization>
+ <AdditionalIncludeDirectories>..\..\JuceLibraryCode;..\..\JuceLibraryCode\modules;$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\include;../../Resources/Google Protocols/src;%(AdditionalIncludeDirectories)</AdditionalIncludeDirectories>
+ <PreprocessorDefinitions>WIN32;_WINDOWS;NDEBUG;NOMINMAX;JUCER_VS2013_78A5020=1;JUCE_APP_VERSION=0.3.2;JUCE_APP_VERSION_HEX=0x302;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ <RuntimeLibrary>MultiThreaded</RuntimeLibrary>
+ <RuntimeTypeInfo>true</RuntimeTypeInfo>
+ <PrecompiledHeader/>
+ <AssemblerListingLocation>$(IntDir)\</AssemblerListingLocation>
+ <ObjectFileName>$(IntDir)\</ObjectFileName>
+ <ProgramDataBaseFileName>$(IntDir)\</ProgramDataBaseFileName>
+ <WarningLevel>Level4</WarningLevel>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <MultiProcessorCompilation>true</MultiProcessorCompilation>
+ <FloatingPointModel>Fast</FloatingPointModel>
+ </ClCompile>
+ <ResourceCompile>
+ <PreprocessorDefinitions>NDEBUG;%(PreprocessorDefinitions)</PreprocessorDefinitions>
+ </ResourceCompile>
+ <Link>
+ <OutputFile>$(OutDir)\open-ephys.exe</OutputFile>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <IgnoreSpecificDefaultLibraries>%(IgnoreSpecificDefaultLibraries)</IgnoreSpecificDefaultLibraries>
+ <GenerateDebugInformation>false</GenerateDebugInformation>
+ <ProgramDatabaseFile>$(IntDir)\open-ephys.pdb</ProgramDatabaseFile>
+ <SubSystem>Windows</SubSystem>
+ <TargetMachine>MachineX86</TargetMachine>
+ <OptimizeReferences>true</OptimizeReferences>
+ <EnableCOMDATFolding>true</EnableCOMDATFolding>
+ <AdditionalLibraryDirectories>$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib;../../Resources/ZeroMQ/lib_x86;../../Resources/Google Protocols/vsprojects/Release;%(AdditionalLibraryDirectories)</AdditionalLibraryDirectories>
+ <LargeAddressAware>true</LargeAddressAware>
+ <AdditionalDependencies>setupapi.lib;opengl32.lib;glu32.lib;hdf5.lib;hdf5_cpp.lib;%(AdditionalDependencies)</AdditionalDependencies>
+ </Link>
+ <Bscmake>
+ <SuppressStartupBanner>true</SuppressStartupBanner>
+ <OutputFile>$(IntDir)\open-ephys.bsc</OutputFile>
+ </Bscmake>
+ <PostBuildEvent>
+ <Command>call "$(SolutionDir)\copydlls.cmd" "$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\bin" "$(SolutionDir)\..\..\Resources\DLLs" "$(OutDir)"</Command>
+ </PostBuildEvent>
+ </ItemDefinitionGroup>
+ <ItemGroup>
+ <ClCompile Include="..\..\Source\AccessClass.cpp"/>
+ <ClCompile Include="..\..\Source\Network\PracticalSocket.cpp"/>
+ <ClCompile Include="..\..\Source\Audio\AudioComponent.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ArduinoOutput\ArduinoOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioNode\AudioNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\AudioResamplingNode\AudioResamplingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Channel\Channel.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ChannelMappingNode\ChannelMappingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\RHD2000Editor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\EcubeThread.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\okFrontPanelDLL.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000datablock.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000evalboard.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\rhythm-api\rhd2000registers.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\RHD2000Thread.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\FileReaderThread.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\FPGAThread.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\DataBuffer.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\DataThreads\DataThread.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Bessel.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Biquad.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Butterworth.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Cascade.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\ChebyshevI.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\ChebyshevII.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Custom.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Design.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Documentation.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Elliptic.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Filter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Legendre.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\Param.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\PoleFilter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\RBJ.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\RootFinder.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Dsp\State.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ChannelSelector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ElectrodeButtons.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\GenericEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\ImageIcon.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Editors\VisualizerEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventDetector\EventDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventNode\EventNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\EventNode\EventNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FileReader\FileReader.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FileReader\FileReaderEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FilterNode\FilterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FilterNode\FilterNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FPGAOutput\FPGAOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\FPGAOutput\FPGAOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\GenericProcessor\GenericProcessor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpDisplayNode\LfpDisplayNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\LfpTriggeredAverageNode\LfpTriggeredAverageNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Merger\Merger.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Merger\MergerEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\MessageCenter\MessageCenter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\MessageCenter\MessageCenterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Parameter\ParameterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Parameter\Parameter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PhaseDetector\PhaseDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PhaseDetector\PhaseDetectorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ProcessorGraph\ProcessorGraph.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\PulsePalOutput\PulsePalOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordControl\RecordControl.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordControl\RecordControlEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\EngineConfigWindow.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\HDF5FileFormat.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\HDF5Recording.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\OriginalRecording.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\RecordEngine.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\RecordNode\RecordNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ReferenceNode\ReferenceNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ReferenceNode\ReferenceNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ResamplingNode\ResamplingNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\ResamplingNode\ResamplingNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\PulsePal.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\ofArduino.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Serial\ofSerial.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SerialInput\SerialInput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SerialInput\SerialInputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SignalGenerator\SignalGenerator.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SignalGenerator\SignalGeneratorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SourceNode\SourceNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SourceNode\SourceNodeEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDetector\SpikeDetector.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDetector\SpikeDetectorEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeDisplayNode\SpikeDisplayNode.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSortBoxes.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorterCanvas.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\SpikeSorter\SpikeSorterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Splitter\Splitter.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Splitter\SplitterEditor.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Visualization\DataWindow.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\Visualization\SpikeObject.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\WiFiOutput\WiFiOutput.cpp"/>
+ <ClCompile Include="..\..\Source\Processors\WiFiOutput\WiFiOutputEditor.cpp"/>
+ <ClCompile Include="..\..\Source\UI\EcubeDialogComponent.cpp"/>
+ <ClCompile Include="..\..\Source\UI\CustomArrowButton.cpp"/>
+ <ClCompile Include="..\..\Source\UI\GraphViewer.cpp"/>
+ <ClCompile Include="..\..\Source\UI\EditorViewportButtons.cpp"/>
+ <ClCompile Include="..\..\Source\UI\SignalChainManager.cpp"/>
+ <ClCompile Include="..\..\Source\UI\EditorViewport.cpp"/>
+ <ClCompile Include="..\..\Source\UI\ProcessorList.cpp"/>
+ <ClCompile Include="..\..\Source\UI\CustomLookAndFeel.cpp"/>
+ <ClCompile Include="..\..\Source\UI\InfoLabel.cpp"/>
+ <ClCompile Include="..\..\Source\UI\DataViewport.cpp"/>
+ <ClCompile Include="..\..\Source\UI\ControlPanel.cpp"/>
+ <ClCompile Include="..\..\Source\UI\UIComponent.cpp"/>
+ <ClCompile Include="..\..\Source\MainWindow.cpp"/>
+ <ClCompile Include="..\..\Source\Main.cpp"/>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\buffers\juce_AudioDataConverters.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\buffers\juce_AudioSampleBuffer.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\buffers\juce_FloatVectorOperations.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\midi\juce_MidiBuffer.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\midi\juce_MidiFile.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\midi\juce_MidiKeyboardState.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\midi\juce_MidiMessage.cpp">
+ <ExcludedFromBuild>true</ExcludedFromBuild>
+ </ClCompile>
+ <ClCompile Include="..\..\JuceLibraryCode\modules\juce_audio_basics\midi\juce_MidiMessageSequence.cpp">
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new file mode 100644
index 0000000000000000000000000000000000000000..552cf996fc94a3692721a2c6823d26c201fff477
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+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\opengl\juce_OpenGLGraphicsContext.h">
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+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGL_android.h">
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+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGL_ios.h">
+ <Filter>Juce Modules\juce_opengl\native</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGL_linux.h">
+ <Filter>Juce Modules\juce_opengl\native</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGL_osx.h">
+ <Filter>Juce Modules\juce_opengl\native</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGL_win32.h">
+ <Filter>Juce Modules\juce_opengl\native</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\native\juce_OpenGLExtensions.h">
+ <Filter>Juce Modules\juce_opengl\native</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_opengl\juce_opengl.h">
+ <Filter>Juce Modules\juce_opengl</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_video\playback\juce_DirectShowComponent.h">
+ <Filter>Juce Modules\juce_video\playback</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_video\playback\juce_QuickTimeMovieComponent.h">
+ <Filter>Juce Modules\juce_video\playback</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_video\capture\juce_CameraDevice.h">
+ <Filter>Juce Modules\juce_video\capture</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\modules\juce_video\juce_video.h">
+ <Filter>Juce Modules\juce_video</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\AppConfig.h">
+ <Filter>Juce Library Code</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\BinaryData.h">
+ <Filter>Juce Library Code</Filter>
+ </ClInclude>
+ <ClInclude Include="..\..\JuceLibraryCode\JuceHeader.h">
+ <Filter>Juce Library Code</Filter>
+ </ClInclude>
+ </ItemGroup>
+ <ItemGroup>
+ <None Include="..\..\Resources\Fonts\cpmono-black-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono-bold-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono-extralight-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono-light-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono-plain-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\BebasNeue.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono_bold.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono_extra_light.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono_light.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\cpmono_plain.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\miso-bold.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\miso-light.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\miso-regular.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\miso-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\nordic.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\ostrich.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\silkscreen-serialized">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\silkscreen.ttf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Fonts\unibody-8.otf">
+ <Filter>open-ephys\Resources\Fonts</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\ArduinoIcon.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\OpenEphysBoardLogoBlack.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\OpenEphysBoardLogoGray.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons-01.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons-02.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons-03.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons-04.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons-05.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_neutral-01.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_neutral-02.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_neutral-03.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_neutral-04.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_neutral-05.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected-01.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected-02.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected-03.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected-04.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected-05.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected_over-01.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected_over-02.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected_over-03.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected_over-04.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\RadioButtons_selected_over-05.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\noise_wave.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\saw_wave.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\sine_wave.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\square_wave.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\triangle_wave.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\wifi.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\SourceDrop.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\DefaultDataSource.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\FileReaderIcon.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Icons\IntanIcon.png">
+ <Filter>open-ephys\Resources\Images\Icons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\muteoff.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\muteon.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\MergerA-01.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\MergerA-02.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\MergerB-01.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\MergerB-02.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\PipelineA-01.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\PipelineA-02.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\PipelineB-01.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\Resources\Images\Buttons\PipelineB-02.png">
+ <Filter>open-ephys\Resources\Images\Buttons</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_audio_basics\juce_module_info">
+ <Filter>Juce Modules\juce_audio_basics</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_audio_devices\juce_module_info">
+ <Filter>Juce Modules\juce_audio_devices</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_audio_formats\juce_module_info">
+ <Filter>Juce Modules\juce_audio_formats</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_audio_processors\juce_module_info">
+ <Filter>Juce Modules\juce_audio_processors</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_audio_utils\juce_module_info">
+ <Filter>Juce Modules\juce_audio_utils</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_core\juce_module_info">
+ <Filter>Juce Modules\juce_core</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_cryptography\juce_module_info">
+ <Filter>Juce Modules\juce_cryptography</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_data_structures\juce_module_info">
+ <Filter>Juce Modules\juce_data_structures</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_events\juce_module_info">
+ <Filter>Juce Modules\juce_events</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_graphics\juce_module_info">
+ <Filter>Juce Modules\juce_graphics</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_gui_basics\juce_module_info">
+ <Filter>Juce Modules\juce_gui_basics</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_gui_extra\juce_module_info">
+ <Filter>Juce Modules\juce_gui_extra</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_opengl\juce_module_info">
+ <Filter>Juce Modules\juce_opengl</Filter>
+ </None>
+ <None Include="..\..\JuceLibraryCode\modules\juce_video\juce_module_info">
+ <Filter>Juce Modules\juce_video</Filter>
+ </None>
+ </ItemGroup>
+ <ItemGroup>
+ <ResourceCompile Include=".\resources.rc">
+ <Filter>Juce Library Code</Filter>
+ </ResourceCompile>
+ </ItemGroup>
+</Project>
diff --git a/Builds/VisualStudio2013/resources.rc b/Builds/VisualStudio2013/resources.rc
new file mode 100644
index 0000000000000000000000000000000000000000..37719a97bd794d32c5c0f172efaaf280f7267255
--- /dev/null
+++ b/Builds/VisualStudio2013/resources.rc
@@ -0,0 +1,30 @@
+#ifdef JUCE_USER_DEFINED_RC_FILE
+ #include JUCE_USER_DEFINED_RC_FILE
+#else
+
+#undef WIN32_LEAN_AND_MEAN
+#define WIN32_LEAN_AND_MEAN
+#include <windows.h>
+
+VS_VERSION_INFO VERSIONINFO
+FILEVERSION 0,3,2,0
+BEGIN
+ BLOCK "StringFileInfo"
+ BEGIN
+ BLOCK "040904E4"
+ BEGIN
+ VALUE "CompanyName", "Open Ephys\0"
+ VALUE "FileDescription", "open-ephys\0"
+ VALUE "FileVersion", "0.3.2\0"
+ VALUE "ProductName", "open-ephys\0"
+ VALUE "ProductVersion", "0.3.2\0"
+ END
+ END
+
+ BLOCK "VarFileInfo"
+ BEGIN
+ VALUE "Translation", 0x409, 65001
+ END
+END
+
+#endif
diff --git a/Introjucer/Builds/MacOSX/The Introjucer.xcodeproj/project.pbxproj b/Introjucer/Builds/MacOSX/The Introjucer.xcodeproj/project.pbxproj
index 97e0433bd3208a21dfef4e9cba0dd5ab7fa72d6a..6eb450a8d3e143cfba18139b783ad3d35eb6e67a 100644
--- a/Introjucer/Builds/MacOSX/The Introjucer.xcodeproj/project.pbxproj
+++ b/Introjucer/Builds/MacOSX/The Introjucer.xcodeproj/project.pbxproj
@@ -6,1937 +6,2586 @@
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+ );
+ name = components;
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+ GCC_INLINES_ARE_PRIVATE_EXTERN = YES;
+ GCC_MODEL_TUNING = G5;
+ GCC_WARN_ABOUT_RETURN_TYPE = YES;
+ GCC_WARN_CHECK_SWITCH_STATEMENTS = YES;
+ GCC_WARN_MISSING_PARENTHESES = YES;
+ GCC_WARN_NON_VIRTUAL_DESTRUCTOR = YES;
+ GCC_WARN_TYPECHECK_CALLS_TO_PRINTF = YES;
+ GCC_WARN_UNUSED_VARIABLE = YES;
+ PRODUCT_NAME = Introjucer;
+ WARNING_CFLAGS = "-Wreorder";
+ ZERO_LINK = NO;
+ };
+ name = Release;
+ };
+ B159CF4275B8A90122629FF4 /* Release */ = {
+ isa = XCBuildConfiguration;
+ buildSettings = {
CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
CLANG_LINK_OBJC_RUNTIME = NO;
COMBINE_HIDPI_IMAGES = YES;
@@ -1949,19 +2598,38 @@
"NDEBUG=1",
"JUCER_XCODE_MAC_F6D2F4CF=1",
"JUCE_APP_VERSION=3.1.0",
- "JUCE_APP_VERSION_HEX=0x30100", );
+ "JUCE_APP_VERSION_HEX=0x30100",
+ );
GCC_SYMBOLS_PRIVATE_EXTERN = YES;
GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
- HEADER_SEARCH_PATHS = ("../../JuceLibraryCode", "../../../JuceLibraryCode/modules", "$(inherited)");
+ HEADER_SEARCH_PATHS = (
+ ../../JuceLibraryCode,
+ ../../../JuceLibraryCode/modules,
+ "$(inherited)",
+ );
INFOPLIST_FILE = Info.plist;
INSTALL_PATH = "$(HOME)/Applications";
MACOSX_DEPLOYMENT_TARGET = 10.5;
MACOSX_DEPLOYMENT_TARGET_ppc = 10.4;
- OTHER_CPLUSPLUSFLAGS = "-Wall -Wshadow -Wno-missing-field-initializers -Wshadow -Wshorten-64-to-32 -Wstrict-aliasing -Wuninitialized -Wunused-parameter";
- SDKROOT_ppc = macosx10.5; }; name = Release; };
- C42924A24AB55E6A940423EA = {isa = XCBuildConfiguration; buildSettings = {
+ OTHER_CPLUSPLUSFLAGS = (
+ "-Wall",
+ "-Wshadow",
+ "-Wno-missing-field-initializers",
+ "-Wshadow",
+ "-Wshorten-64-to-32",
+ "-Wstrict-aliasing",
+ "-Wuninitialized",
+ "-Wunused-parameter",
+ );
+ SDKROOT_ppc = macosx10.5;
+ };
+ name = Release;
+ };
+ C42924A24AB55E6A940423EA /* Debug */ = {
+ isa = XCBuildConfiguration;
+ buildSettings = {
ALWAYS_SEARCH_USER_PATHS = NO;
- DEBUG_INFORMATION_FORMAT = "dwarf";
+ DEBUG_INFORMATION_FORMAT = dwarf;
GCC_C_LANGUAGE_STANDARD = c99;
GCC_INLINES_ARE_PRIVATE_EXTERN = YES;
GCC_MODEL_TUNING = G5;
@@ -1971,95 +2639,75 @@
GCC_WARN_NON_VIRTUAL_DESTRUCTOR = YES;
GCC_WARN_TYPECHECK_CALLS_TO_PRINTF = YES;
GCC_WARN_UNUSED_VARIABLE = YES;
- PRODUCT_NAME = "Introjucer";
- WARNING_CFLAGS = -Wreorder;
- ZERO_LINK = NO; }; name = Debug; };
- 70135D15D7E0D8410C42BBA3 = {isa = XCBuildConfiguration; buildSettings = {
- ALWAYS_SEARCH_USER_PATHS = NO;
- DEBUG_INFORMATION_FORMAT = "dwarf";
- GCC_C_LANGUAGE_STANDARD = c99;
- GCC_INLINES_ARE_PRIVATE_EXTERN = YES;
- GCC_MODEL_TUNING = G5;
- GCC_WARN_ABOUT_RETURN_TYPE = YES;
- GCC_WARN_CHECK_SWITCH_STATEMENTS = YES;
- GCC_WARN_MISSING_PARENTHESES = YES;
- GCC_WARN_NON_VIRTUAL_DESTRUCTOR = YES;
- GCC_WARN_TYPECHECK_CALLS_TO_PRINTF = YES;
- GCC_WARN_UNUSED_VARIABLE = YES;
- PRODUCT_NAME = "Introjucer";
- WARNING_CFLAGS = -Wreorder;
- ZERO_LINK = NO; }; name = Release; };
- F90407F24422C589DA251604 = {isa = XCConfigurationList; buildConfigurations = (
- C42924A24AB55E6A940423EA,
- 70135D15D7E0D8410C42BBA3, ); defaultConfigurationIsVisible = 0; defaultConfigurationName = Debug; };
- 9D7584E9B3803102EC798231 = {isa = XCConfigurationList; buildConfigurations = (
- EA0BCC969703B2D179089E55,
- B159CF4275B8A90122629FF4, ); defaultConfigurationIsVisible = 0; defaultConfigurationName = Debug; };
- C009859650B4628FDD068941 = {isa = PBXResourcesBuildPhase; buildActionMask = 2147483647; files = (
- 2610F357881240ACBF612F48,
- 1321E6C1C6170B6C898AD09D,
- 6FC19EBA7A51423C3D22F77B, ); runOnlyForDeploymentPostprocessing = 0; };
- 84449D044096A03F2582904B = {isa = PBXSourcesBuildPhase; buildActionMask = 2147483647; files = (
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- 3DC282564876B1FC88AAA9B3,
- C49E1D32A9DCE3D59BC48B1D,
- E1268E019B434F6B5E9317DC,
- CE91112DADB97C573C3C674D,
- A70F0274076C0D44ED71C980,
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- 45A53AF13B0D663050632E8C,
- C2A85091A28C907A4E1E1687,
- 83431B7234A78ECFB3C15F63,
- 209FCCC2155A1FCB7E11E20D,
- C93569F47B4AC1A8E37992ED,
- 1B988E139004D8E2850EB656,
- 3C5267E06A897B0DC0F7EA50,
- F70594FF1FFED9AC12F43709,
- 01D45DD829D8848733090B67,
- 4028CA96EA50175DD6B8D976,
- F743B7B2709E72250982F2FB,
- 45576193A53DE94F5BF4C3D4,
- BF57EEE3415D6F8F03206846,
- 20102F921FAA2A92CED056C0, ); runOnlyForDeploymentPostprocessing = 0; };
- B8D802107FEE6AD60F5309A3 = {isa = PBXFrameworksBuildPhase; buildActionMask = 2147483647; files = (
- 1E76E36772355E2A43CF4961,
- 241F29FCBB7A17BB44A0B10C,
- 49C22786B54C5DC94E4654B8,
- 11D42F7EC6E6539D79A7F4B1,
- B980464FA2761CCD64B1FAD6, ); runOnlyForDeploymentPostprocessing = 0; };
- FE688C03195D5E72123A75BF = {isa = PBXNativeTarget; buildConfigurationList = 9D7584E9B3803102EC798231; buildPhases = (
- C009859650B4628FDD068941,
- 84449D044096A03F2582904B,
- B8D802107FEE6AD60F5309A3, ); buildRules = ( ); dependencies = ( ); name = "The Introjucer"; productName = "The Introjucer"; productReference = 25F52316D256B4534BED16D1; productInstallPath = "$(HOME)/Applications"; productType = "com.apple.product-type.application"; };
- 74EA481348A24104E6ACE009 = {isa = PBXProject; buildConfigurationList = F90407F24422C589DA251604; attributes = { LastUpgradeCheck = 0440; }; compatibilityVersion = "Xcode 3.2"; hasScannedForEncodings = 0; mainGroup = 3CC531922CC2D398E283A845; projectDirPath = ""; projectRoot = ""; targets = ( FE688C03195D5E72123A75BF ); };
+ ONLY_ACTIVE_ARCH = YES;
+ PRODUCT_NAME = Introjucer;
+ WARNING_CFLAGS = "-Wreorder";
+ ZERO_LINK = NO;
+ };
+ name = Debug;
+ };
+ EA0BCC969703B2D179089E55 /* Debug */ = {
+ isa = XCBuildConfiguration;
+ buildSettings = {
+ CLANG_CXX_LANGUAGE_STANDARD = "c++0x";
+ CLANG_LINK_OBJC_RUNTIME = NO;
+ COMBINE_HIDPI_IMAGES = YES;
+ CONFIGURATION_BUILD_DIR = "$(PROJECT_DIR)/build/$(CONFIGURATION)";
+ COPY_PHASE_STRIP = NO;
+ GCC_DYNAMIC_NO_PIC = NO;
+ GCC_OPTIMIZATION_LEVEL = 0;
+ GCC_PREPROCESSOR_DEFINITIONS = (
+ "_DEBUG=1",
+ "DEBUG=1",
+ "JUCER_XCODE_MAC_F6D2F4CF=1",
+ "JUCE_APP_VERSION=3.1.0",
+ "JUCE_APP_VERSION_HEX=0x30100",
+ );
+ GCC_VERSION = com.apple.compilers.llvm.clang.1_0;
+ HEADER_SEARCH_PATHS = (
+ ../../JuceLibraryCode,
+ ../../../JuceLibraryCode/modules,
+ "$(inherited)",
+ );
+ INFOPLIST_FILE = Info.plist;
+ INSTALL_PATH = "$(HOME)/Applications";
+ MACOSX_DEPLOYMENT_TARGET_ppc = 10.4;
+ OTHER_CPLUSPLUSFLAGS = (
+ "-Wall",
+ "-Wshadow",
+ "-Wno-missing-field-initializers",
+ "-Wshadow",
+ "-Wshorten-64-to-32",
+ "-Wstrict-aliasing",
+ "-Wuninitialized",
+ "-Wunused-parameter",
+ );
+ SDKROOT_ppc = macosx10.5;
+ };
+ name = Debug;
+ };
+/* End XCBuildConfiguration section */
+
+/* Begin XCConfigurationList section */
+ 9D7584E9B3803102EC798231 /* Build configuration list for PBXNativeTarget "The Introjucer" */ = {
+ isa = XCConfigurationList;
+ buildConfigurations = (
+ EA0BCC969703B2D179089E55 /* Debug */,
+ B159CF4275B8A90122629FF4 /* Release */,
+ );
+ defaultConfigurationIsVisible = 0;
+ defaultConfigurationName = Debug;
+ };
+ F90407F24422C589DA251604 /* Build configuration list for PBXProject "The Introjucer" */ = {
+ isa = XCConfigurationList;
+ buildConfigurations = (
+ C42924A24AB55E6A940423EA /* Debug */,
+ 70135D15D7E0D8410C42BBA3 /* Release */,
+ );
+ defaultConfigurationIsVisible = 0;
+ defaultConfigurationName = Debug;
+ };
+/* End XCConfigurationList section */
};
- rootObject = 74EA481348A24104E6ACE009;
+ rootObject = 74EA481348A24104E6ACE009 /* Project object */;
}
diff --git a/JuceLibraryCode/BinaryData.cpp b/JuceLibraryCode/BinaryData.cpp
index c2c491f97a3cb69135061fc6d94fdefd30a211ce..9ae1e8819cec0b9e6bfde49bdae88398d456449c 100644
--- a/JuceLibraryCode/BinaryData.cpp
+++ b/JuceLibraryCode/BinaryData.cpp
@@ -8,7 +8,7 @@ namespace BinaryData
{
//================== cpmono-black-serialized ==================
-static const unsigned char temp_77517bbb[] =
+static const unsigned char temp_binary_data_0[] =
{ 120,156,237,157,127,156,149,85,181,255,71,65,64,12,10,47,132,9,130,81,152,63,80,233,226,197,66,158,103,176,240,66,23,47,136,93,12,186,24,196,211,65,177,51,228,185,151,210,11,134,66,141,97,160,32,40,5,57,6,130,130,160,99,16,36,8,231,57,6,66,98,160,24,
212,24,228,143,33,212,41,16,20,196,194,160,190,251,253,89,207,179,103,200,31,13,126,49,61,190,248,99,102,125,94,103,255,90,251,199,179,247,218,107,175,189,246,231,47,249,207,111,140,252,198,144,111,117,62,191,164,164,100,240,228,207,149,158,90,242,55,
135,142,41,89,184,160,105,233,200,50,7,75,102,111,106,20,102,1,35,103,117,41,100,245,123,10,8,138,202,58,116,184,43,56,99,112,251,66,22,16,54,253,82,144,221,176,126,103,232,1,65,81,217,105,133,167,2,151,199,13,217,19,170,162,176,124,199,173,113,150,95,
@@ -229,10 +229,10 @@ static const unsigned char temp_77517bbb[] =
33,16,98,208,66,64,165,133,0,168,139,0,116,17,81,213,69,164,165,35,200,236,208,187,111,169,2,12,170,46,2,72,31,2,160,188,148,147,168,140,108,213,204,0,29,214,114,202,236,65,226,103,102,120,232,129,212,29,171,247,93,105,234,14,91,227,94,138,253,11,117,
39,245,137,109,181,198,15,39,160,102,201,43,166,238,224,78,3,234,14,168,158,218,3,104,152,0,24,38,68,213,48,33,173,29,159,199,233,48,177,155,126,42,15,0,3,176,29,101,254,118,116,116,191,107,163,251,200,205,65,174,242,37,255,15,41,157,224,99,0,0 };
-const char* cpmonoblackserialized = (const char*) temp_77517bbb;
+const char* cpmonoblackserialized = (const char*) temp_binary_data_0;
//================== cpmono-bold-serialized ==================
-static const unsigned char temp_62a06903[] =
+static const unsigned char temp_binary_data_1[] =
{ 120,156,237,157,15,156,87,69,185,255,65,8,20,47,36,94,76,19,83,219,46,94,52,77,10,131,90,247,28,212,48,45,188,24,118,53,236,210,213,56,125,81,185,223,37,206,109,11,46,118,81,40,188,32,38,136,134,129,173,173,130,65,144,171,16,40,202,126,207,33,8,10,131,
194,160,182,32,44,8,107,11,68,3,177,48,200,223,188,63,207,57,243,101,213,250,129,47,42,191,190,120,189,246,181,207,231,245,157,63,231,153,153,103,102,158,153,121,230,153,15,124,228,223,62,61,226,211,215,124,174,87,223,54,109,218,12,153,114,81,191,211,
219,188,228,80,219,54,243,231,117,234,55,162,214,193,54,247,173,239,16,22,1,35,26,122,167,69,253,158,3,130,162,218,150,69,227,130,117,55,188,35,45,2,174,222,53,57,40,158,210,242,124,232,1,65,81,237,236,145,165,192,229,113,115,241,198,110,35,194,9,219,
@@ -466,10 +466,10 @@ static const unsigned char temp_62a06903[] =
51,181,25,217,171,205,216,211,1,112,175,76,109,134,99,37,218,12,170,54,3,48,217,40,132,199,124,136,58,145,7,18,72,11,71,57,175,81,45,31,86,203,0,116,100,204,109,66,15,50,39,17,131,66,15,180,131,130,86,170,29,20,118,124,144,10,58,153,164,3,85,87,26,1,
62,84,1,80,61,172,2,144,220,0,108,87,189,201,228,134,196,146,27,228,18,64,246,48,21,21,94,58,34,238,127,63,113,63,124,163,148,171,141,54,255,15,230,92,172,169,0,0 };
-const char* cpmonoboldserialized = (const char*) temp_62a06903;
+const char* cpmonoboldserialized = (const char*) temp_binary_data_1;
//================== cpmono-extralight-serialized ==================
-static const unsigned char temp_b510c8a2[] =
+static const unsigned char temp_binary_data_2[] =
{ 120,156,237,157,127,188,149,69,181,255,81,16,232,24,24,10,65,129,98,20,132,133,129,97,218,69,246,3,26,126,177,139,23,193,210,176,75,87,227,113,195,133,246,38,118,151,130,164,48,40,16,195,4,81,143,74,29,5,193,32,240,158,194,64,65,206,126,54,129,160,32,
40,4,122,8,130,4,33,143,65,160,32,42,134,117,231,253,89,207,51,251,80,118,191,71,47,254,216,190,248,99,191,230,243,218,243,107,61,107,214,172,89,51,179,102,230,11,253,254,237,155,195,191,121,245,119,186,156,95,175,94,189,129,83,46,234,113,102,189,191,
57,116,66,189,249,243,202,122,12,207,58,88,111,230,198,134,65,6,48,124,70,215,66,70,255,39,128,168,48,123,227,164,73,221,207,26,216,185,144,1,180,157,176,39,149,25,50,184,97,15,15,136,10,179,77,71,126,53,229,202,248,65,230,236,195,19,130,9,123,110,137,
@@ -713,10 +713,10 @@ static const unsigned char temp_b510c8a2[] =
120,66,120,32,139,155,40,15,180,126,150,157,113,154,128,107,216,179,37,108,220,194,47,233,224,13,93,89,4,92,176,15,24,56,101,167,173,159,113,105,17,195,62,33,235,103,186,197,72,130,4,64,144,72,42,65,34,47,226,66,97,18,36,138,143,5,233,108,1,8,128,236,
48,253,183,227,242,255,46,202,255,177,211,99,142,61,245,254,7,170,167,234,165,0,0 };
-const char* cpmonoextralightserialized = (const char*) temp_b510c8a2;
+const char* cpmonoextralightserialized = (const char*) temp_binary_data_2;
//================== cpmono-light-serialized ==================
-static const unsigned char temp_72729244[] =
+static const unsigned char temp_binary_data_3[] =
{ 120,156,237,157,127,160,149,69,181,247,81,16,12,195,196,32,40,8,184,167,80,41,20,13,195,222,19,207,6,12,47,118,233,98,120,47,132,69,65,60,110,12,218,155,216,93,186,16,118,17,168,99,7,161,32,48,76,13,131,192,32,168,83,120,161,64,206,126,54,129,135,4,65,
65,168,99,32,40,4,117,18,2,130,208,11,65,189,243,249,174,231,153,125,200,122,47,250,226,143,109,252,115,230,123,246,252,90,207,204,154,53,107,102,214,172,249,208,71,255,245,115,163,62,55,228,63,175,190,174,65,131,6,131,167,95,223,163,67,131,191,56,116,
94,131,37,139,155,246,24,149,117,176,193,188,173,141,83,25,192,168,185,93,11,25,253,158,0,162,194,236,202,118,23,4,147,251,189,183,144,1,236,107,245,88,144,41,12,58,191,135,7,68,133,217,41,149,149,129,43,99,98,102,204,246,137,169,138,253,223,136,50,252,
@@ -973,10 +973,10 @@ static const unsigned char temp_72729244[] =
195,60,113,76,68,82,189,98,69,94,234,75,40,9,179,212,163,142,0,200,180,129,55,79,61,208,165,32,162,60,208,222,215,218,99,87,216,222,23,55,12,225,138,77,27,99,207,194,67,59,175,52,141,128,61,47,211,39,127,99,123,95,139,154,253,81,123,95,132,58,191,0,136,
145,0,48,18,73,197,72,228,133,93,40,76,140,68,241,98,164,228,70,35,4,64,118,152,254,203,57,254,127,13,249,255,236,201,49,215,60,13,254,47,224,111,82,132,0,0 };
-const char* cpmonolightserialized = (const char*) temp_72729244;
+const char* cpmonolightserialized = (const char*) temp_binary_data_3;
//================== cpmono-plain-serialized ==================
-static const unsigned char temp_7b72b510[] =
+static const unsigned char temp_binary_data_4[] =
{ 120,156,237,157,127,188,86,69,181,255,143,130,96,40,36,6,98,65,104,39,33,44,8,10,67,67,246,62,80,120,177,240,106,88,16,118,241,66,108,31,20,122,14,185,187,20,132,93,68,12,67,161,48,48,76,234,212,65,84,16,244,24,4,10,194,179,31,2,193,64,240,30,131,194,
32,44,8,12,131,192,48,72,184,144,119,222,159,181,247,28,200,238,247,162,95,127,61,198,31,231,181,62,231,153,31,123,205,204,154,153,53,51,107,214,124,242,51,255,250,229,225,95,30,248,181,78,23,150,149,149,13,152,252,137,138,115,203,94,114,232,164,178,
185,115,26,85,12,175,116,176,108,198,250,6,97,30,48,188,186,115,49,175,223,51,64,80,84,233,146,5,155,187,127,160,152,7,76,29,248,64,144,239,52,237,112,232,1,65,81,101,121,249,221,129,203,99,108,126,212,200,145,225,248,93,223,77,242,252,50,126,87,211,
@@ -1230,10 +1230,10 @@ static const unsigned char temp_7b72b510[] =
0,27,91,68,213,198,22,105,225,40,227,53,170,180,27,162,231,22,196,138,108,12,220,164,29,120,160,235,41,4,121,160,125,43,154,68,251,86,204,159,72,5,47,118,73,58,120,227,78,42,194,244,187,14,10,64,101,123,97,160,204,66,144,14,162,74,110,72,156,118,156,
171,5,200,30,166,162,220,75,39,196,253,141,19,247,215,110,148,114,252,151,253,15,5,44,29,103,0,0 };
-const char* cpmonoplainserialized = (const char*) temp_7b72b510;
+const char* cpmonoplainserialized = (const char*) temp_binary_data_4;
//================== BebasNeue.otf ==================
-static const unsigned char temp_7b880677[] =
+static const unsigned char temp_binary_data_5[] =
{ 79,84,84,79,0,11,0,128,0,3,0,48,67,70,70,32,57,136,64,140,0,0,39,76,0,0,70,154,71,80,79,83,223,12,110,56,0,0,116,248,0,0,73,16,71,83,85,66,114,203,114,178,0,0,116,0,0,0,0,246,79,83,47,50,102,169,27,20,0,0,1,32,0,0,0,96,99,109,97,112,211,17,247,228,0,
0,35,232,0,0,3,68,104,101,97,100,243,84,238,113,0,0,0,188,0,0,0,54,104,104,101,97,6,215,3,186,0,0,0,244,0,0,0,36,104,109,116,120,67,128,39,22,0,0,109,232,0,0,6,24,109,97,120,112,1,134,80,0,0,0,1,24,0,0,0,6,110,97,109,101,230,56,31,140,0,0,1,128,0,0,34,
101,112,111,115,116,255,184,0,50,0,0,39,44,0,0,0,32,0,1,0,0,0,1,0,131,131,184,68,27,95,15,60,245,0,3,3,232,0,0,0,0,200,111,85,40,0,0,0,0,200,111,85,40,255,119,255,60,3,232,3,130,0,0,0,3,0,2,0,0,0,0,0,0,0,1,0,0,2,188,254,212,0,185,3,232,255,119,255,119,
@@ -1843,10 +1843,10 @@ static const unsigned char temp_7b880677[] =
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,10,0,3,0,10,0,3,0,10,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,0,24,0,22,0,24,0,22,0,24,0,22,0,24,0,4,0,11,0,4,0,11,0,4,0,11,0,23,0,25,0,23,0,25,0,23,0,25,0,23,0,25,0,23,0,25,0,23,0,25,0,5,0,12,0,6,0,13,0,6,0,19,
0,21,0,19,0,21,0,19,0,21,0,15,0,17,0,3,0,10,0,22,0,24,0,4,0,11,0,20,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22,0,24,0,4,0,11,0,5,0,12,0,5,0,12,0,5,0,12,0,6,0,13,0,0 };
-const char* BebasNeue_otf = (const char*) temp_7b880677;
+const char* BebasNeue_otf = (const char*) temp_binary_data_5;
//================== cpmono_bold.otf ==================
-static const unsigned char temp_8e883f13[] =
+static const unsigned char temp_binary_data_6[] =
{ 79,84,84,79,0,10,0,128,0,3,0,32,67,70,70,32,35,187,57,254,0,0,10,112,0,0,84,205,71,83,85,66,106,18,122,98,0,0,98,20,0,0,5,216,79,83,47,50,104,215,98,101,0,0,1,16,0,0,0,96,99,109,97,112,38,198,129,33,0,0,5,56,0,0,5,24,104,101,97,100,237,187,124,213,0,
0,0,172,0,0,0,54,104,104,101,97,6,229,0,115,0,0,0,228,0,0,0,36,104,109,116,120,58,11,56,208,0,0,95,64,0,0,2,212,109,97,120,112,1,105,80,0,0,0,1,8,0,0,0,6,110,97,109,101,226,66,147,104,0,0,1,112,0,0,3,198,112,111,115,116,255,181,0,161,0,0,10,80,0,0,0,
32,0,1,0,0,0,1,0,0,64,149,238,152,95,15,60,245,0,3,3,232,0,0,0,0,198,13,28,168,0,0,0,0,198,13,28,168,255,7,255,16,3,131,3,149,0,0,0,3,0,2,0,0,0,0,0,0,0,1,0,0,3,144,254,224,0,200,2,138,255,7,255,7,3,131,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,80,0,1,105,
@@ -2190,10 +2190,10 @@ static const unsigned char temp_8e883f13[] =
0,2,0,21,0,4,0,12,0,0,0,14,0,19,0,9,0,21,0,23,0,15,0,28,0,28,0,18,0,36,0,51,0,19,0,53,0,54,0,35,0,57,0,60,0,37,0,63,0,66,0,41,0,71,0,72,0,45,0,82,0,82,0,47,0,92,0,92,0,48,0,99,0,99,0,49,0,103,0,106,0,50,0,140,0,162,0,54,0,165,0,168,0,77,0,179,0,184,0,
81,0,208,0,209,0,87,0,214,0,214,0,89,0,224,1,6,0,90,1,8,1,8,0,129,1,13,1,13,0,130,0,1,0,26,0,3,0,13,0,20,0,24,0,25,0,26,0,27,0,52,0,55,0,56,0,61,0,62,0,67,0,68,0,69,0,70,0,134,0,135,0,136,0,137,0,138,0,139,0,163,0,164,0,169,1,7,0,0 };
-const char* cpmono_bold_otf = (const char*) temp_8e883f13;
+const char* cpmono_bold_otf = (const char*) temp_binary_data_6;
//================== cpmono_extra_light.otf ==================
-static const unsigned char temp_8172799f[] =
+static const unsigned char temp_binary_data_7[] =
{ 79,84,84,79,0,10,0,128,0,3,0,32,67,70,70,32,248,217,201,134,0,0,10,164,0,0,78,103,71,83,85,66,106,18,122,98,0,0,91,224,0,0,5,216,79,83,47,50,104,210,98,59,0,0,1,16,0,0,0,96,99,109,97,112,38,198,129,33,0,0,5,108,0,0,5,24,104,101,97,100,237,187,115,86,
0,0,0,172,0,0,0,54,104,104,101,97,6,229,0,179,0,0,0,228,0,0,0,36,104,109,116,120,81,57,79,54,0,0,89,12,0,0,2,212,109,97,120,112,1,105,80,0,0,0,1,8,0,0,0,6,110,97,109,101,101,109,217,12,0,0,1,112,0,0,3,252,112,111,115,116,255,181,0,161,0,0,10,132,0,0,
0,32,0,1,0,0,0,1,0,0,97,176,60,66,95,15,60,245,0,3,3,232,0,0,0,0,198,13,23,248,0,0,0,0,198,13,23,248,255,71,255,16,3,67,3,118,0,0,0,3,0,2,0,0,0,0,0,0,0,1,0,0,3,144,254,224,0,200,2,138,255,71,255,71,3,67,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,80,0,1,
@@ -2518,10 +2518,10 @@ static const unsigned char temp_8172799f[] =
0,55,0,61,0,62,0,70,0,2,0,21,0,4,0,12,0,0,0,14,0,19,0,9,0,21,0,23,0,15,0,28,0,28,0,18,0,36,0,51,0,19,0,53,0,54,0,35,0,57,0,60,0,37,0,63,0,66,0,41,0,71,0,72,0,45,0,82,0,82,0,47,0,92,0,92,0,48,0,99,0,99,0,49,0,103,0,106,0,50,0,140,0,162,0,54,0,165,0,168,
0,77,0,179,0,184,0,81,0,208,0,209,0,87,0,214,0,214,0,89,0,224,1,6,0,90,1,8,1,8,0,129,1,13,1,13,0,130,0,1,0,26,0,3,0,13,0,20,0,24,0,25,0,26,0,27,0,52,0,55,0,56,0,61,0,62,0,67,0,68,0,69,0,70,0,134,0,135,0,136,0,137,0,138,0,139,0,163,0,164,0,169,1,7,0,0 };
-const char* cpmono_extra_light_otf = (const char*) temp_8172799f;
+const char* cpmono_extra_light_otf = (const char*) temp_binary_data_7;
//================== cpmono_light.otf ==================
-static const unsigned char temp_9ff5f6ce[] =
+static const unsigned char temp_binary_data_8[] =
{ 79,84,84,79,0,10,0,128,0,3,0,32,67,70,70,32,64,226,171,159,0,0,10,124,0,0,81,133,71,83,85,66,106,18,122,98,0,0,94,216,0,0,5,216,79,83,47,50,104,211,98,73,0,0,1,16,0,0,0,96,99,109,97,112,38,198,129,33,0,0,5,68,0,0,5,24,104,101,97,100,237,187,127,116,0,
0,0,172,0,0,0,54,104,104,101,97,6,229,0,158,0,0,0,228,0,0,0,36,104,109,116,120,73,105,71,167,0,0,92,4,0,0,2,212,109,97,120,112,1,105,80,0,0,0,1,8,0,0,0,6,110,97,109,101,106,76,91,179,0,0,1,112,0,0,3,209,112,111,115,116,255,181,0,161,0,0,10,92,0,0,0,32,
0,1,0,0,0,1,0,0,215,127,97,71,95,15,60,245,0,3,3,232,0,0,0,0,198,13,30,2,0,0,0,0,198,13,30,2,255,50,255,16,3,88,3,128,0,0,0,3,0,2,0,0,0,0,0,0,0,1,0,0,3,144,254,224,0,200,2,138,255,50,255,50,3,88,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,80,0,1,105,0,0,
@@ -2856,10 +2856,10 @@ static const unsigned char temp_9ff5f6ce[] =
0,4,0,12,0,0,0,14,0,19,0,9,0,21,0,23,0,15,0,28,0,28,0,18,0,36,0,51,0,19,0,53,0,54,0,35,0,57,0,60,0,37,0,63,0,66,0,41,0,71,0,72,0,45,0,82,0,82,0,47,0,92,0,92,0,48,0,99,0,99,0,49,0,103,0,106,0,50,0,140,0,162,0,54,0,165,0,168,0,77,0,179,0,184,0,81,0,208,
0,209,0,87,0,214,0,214,0,89,0,224,1,6,0,90,1,8,1,8,0,129,1,13,1,13,0,130,0,1,0,26,0,3,0,13,0,20,0,24,0,25,0,26,0,27,0,52,0,55,0,56,0,61,0,62,0,67,0,68,0,69,0,70,0,134,0,135,0,136,0,137,0,138,0,139,0,163,0,164,0,169,1,7,0,0 };
-const char* cpmono_light_otf = (const char*) temp_9ff5f6ce;
+const char* cpmono_light_otf = (const char*) temp_binary_data_8;
//================== cpmono_plain.otf ==================
-static const unsigned char temp_eca62182[] =
+static const unsigned char temp_binary_data_9[] =
{ 79,84,84,79,0,10,0,128,0,3,0,32,67,70,70,32,153,52,71,27,0,0,10,124,0,0,81,49,71,83,85,66,106,18,122,98,0,0,94,132,0,0,5,216,79,83,47,50,104,213,98,87,0,0,1,16,0,0,0,96,99,109,97,112,38,198,129,33,0,0,5,68,0,0,5,24,104,101,97,100,237,186,121,35,0,0,0,
172,0,0,0,54,104,104,101,97,6,228,0,137,0,0,0,228,0,0,0,36,104,109,116,120,65,179,64,52,0,0,91,176,0,0,2,212,109,97,120,112,1,105,80,0,0,0,1,8,0,0,0,6,110,97,109,101,95,80,74,175,0,0,1,112,0,0,3,209,112,111,115,116,255,181,0,161,0,0,10,92,0,0,0,32,0,
1,0,0,0,1,0,0,76,64,104,233,95,15,60,245,0,3,3,232,0,0,0,0,198,13,26,212,0,0,0,0,198,13,26,212,255,28,255,16,3,109,3,139,0,0,0,3,0,2,0,0,0,0,0,0,0,1,0,0,3,144,254,224,0,200,2,138,255,28,255,29,3,109,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,80,0,1,105,
@@ -3193,10 +3193,10 @@ static const unsigned char temp_eca62182[] =
0,50,0,140,0,162,0,54,0,165,0,168,0,77,0,179,0,184,0,81,0,208,0,209,0,87,0,214,0,214,0,89,0,224,1,6,0,90,1,8,1,8,0,129,1,13,1,13,0,130,0,1,0,26,0,3,0,13,0,20,0,24,0,25,0,26,0,27,0,52,0,55,0,56,0,61,0,62,0,67,0,68,0,69,0,70,0,134,0,135,0,136,0,137,0,138,
0,139,0,163,0,164,0,169,1,7,0,0 };
-const char* cpmono_plain_otf = (const char*) temp_eca62182;
+const char* cpmono_plain_otf = (const char*) temp_binary_data_9;
//================== miso-bold.ttf ==================
-static const unsigned char temp_7dfa977e[] =
+static const unsigned char temp_binary_data_10[] =
{ 0,1,0,0,0,17,1,0,0,4,0,16,76,84,83,72,237,157,221,60,0,0,5,108,0,0,0,227,79,83,47,50,81,16,250,27,0,0,1,152,0,0,0,86,86,68,77,88,108,156,116,37,0,0,231,220,0,0,5,224,99,109,97,112,117,108,128,122,0,0,26,212,0,0,6,164,99,118,116,32,0,20,0,0,0,0,34,224,
0,0,0,2,102,112,103,109,50,77,115,102,0,0,33,120,0,0,1,98,103,108,121,102,122,237,74,59,0,0,34,228,0,0,184,220,104,100,109,120,139,147,218,195,0,0,6,80,0,0,20,132,104,101,97,100,230,15,38,231,0,0,1,28,0,0,0,54,104,104,101,97,6,202,7,163,0,0,1,84,0,0,
0,36,104,109,116,120,82,131,27,122,0,0,1,240,0,0,3,124,107,101,114,110,23,5,21,255,0,0,221,128,0,0,4,68,108,111,99,97,100,35,145,228,0,0,219,192,0,0,1,192,109,97,120,112,2,241,2,157,0,0,1,120,0,0,0,32,110,97,109,101,215,203,101,65,0,0,225,196,0,0,3,225,
@@ -3880,10 +3880,10 @@ static const unsigned char temp_7dfa977e[] =
255,203,0,239,0,212,255,203,0,240,0,213,255,203,0,241,0,214,255,202,0,242,0,215,255,202,0,243,0,216,255,202,0,244,0,217,255,202,0,245,0,218,255,202,0,246,0,218,255,201,0,247,0,219,255,201,0,248,0,220,255,201,0,249,0,221,255,201,0,250,0,222,255,201,0,
251,0,223,255,200,0,252,0,224,255,200,0,253,0,225,255,200,0,254,0,226,255,200,0,255,0,226,255,199,0,0 };
-const char* misobold_ttf = (const char*) temp_7dfa977e;
+const char* misobold_ttf = (const char*) temp_binary_data_10;
//================== miso-light.ttf ==================
-static const unsigned char temp_9ecc78ad[] =
+static const unsigned char temp_binary_data_11[] =
{ 0,1,0,0,0,17,1,0,0,4,0,16,76,84,83,72,109,206,108,252,0,0,5,108,0,0,0,227,79,83,47,50,79,98,250,86,0,0,1,152,0,0,0,86,86,68,77,88,108,201,116,87,0,0,229,68,0,0,5,224,99,109,97,112,117,108,128,122,0,0,26,212,0,0,6,164,99,118,116,32,0,20,0,0,0,0,34,224,
0,0,0,2,102,112,103,109,50,77,115,102,0,0,33,120,0,0,1,98,103,108,121,102,9,54,37,173,0,0,34,228,0,0,182,56,104,100,109,120,120,118,213,147,0,0,6,80,0,0,20,132,104,101,97,100,230,13,38,194,0,0,1,28,0,0,0,54,104,104,101,97,6,201,7,195,0,0,1,84,0,0,0,36,
104,109,116,120,82,124,51,141,0,0,1,240,0,0,3,124,107,101,114,110,23,5,21,255,0,0,218,220,0,0,4,68,108,111,99,97,249,219,39,62,0,0,217,28,0,0,1,192,109,97,120,112,2,241,2,188,0,0,1,120,0,0,0,32,110,97,109,101,174,204,29,32,0,0,223,32,0,0,3,240,112,111,
@@ -4549,10 +4549,10 @@ static const unsigned char temp_9ecc78ad[] =
203,0,243,0,216,255,203,0,244,0,217,255,203,0,245,0,218,255,202,0,246,0,218,255,202,0,247,0,219,255,202,0,248,0,220,255,202,0,249,0,221,255,201,0,250,0,222,255,201,0,251,0,223,255,201,0,252,0,224,255,201,0,253,0,225,255,201,0,254,0,226,255,200,0,255,
0,226,255,200,0,0 };
-const char* misolight_ttf = (const char*) temp_9ecc78ad;
+const char* misolight_ttf = (const char*) temp_binary_data_11;
//================== miso-regular.ttf ==================
-static const unsigned char temp_bfd04473[] =
+static const unsigned char temp_binary_data_12[] =
{ 0,1,0,0,0,17,1,0,0,4,0,16,76,84,83,72,96,206,125,196,0,0,5,108,0,0,0,227,79,83,47,50,79,197,250,61,0,0,1,152,0,0,0,86,86,68,77,88,108,201,116,86,0,0,225,224,0,0,5,224,99,109,97,112,117,108,128,122,0,0,26,212,0,0,6,164,99,118,116,32,0,20,0,0,0,0,34,224,
0,0,0,2,102,112,103,109,50,77,115,102,0,0,33,120,0,0,1,98,103,108,121,102,144,118,127,194,0,0,34,228,0,0,179,20,104,100,109,120,123,104,215,146,0,0,6,80,0,0,20,132,104,101,97,100,230,14,38,213,0,0,1,28,0,0,0,54,104,104,101,97,6,189,7,195,0,0,1,84,0,0,
0,36,104,109,116,120,82,124,40,229,0,0,1,240,0,0,3,124,107,101,114,110,23,5,21,255,0,0,215,184,0,0,4,68,108,111,99,97,156,38,200,236,0,0,213,248,0,0,1,192,109,97,120,112,2,241,2,186,0,0,1,120,0,0,0,32,110,97,109,101,65,189,188,90,0,0,219,252,0,0,3,174,
@@ -5216,10 +5216,10 @@ static const unsigned char temp_bfd04473[] =
0,206,255,208,0,236,0,207,255,207,0,237,0,207,255,207,0,238,0,208,255,207,0,239,0,209,255,207,0,240,0,210,255,207,0,241,0,211,255,206,0,242,0,212,255,206,0,243,0,213,255,206,0,244,0,214,255,206,0,245,0,214,255,206,0,246,0,215,255,205,0,247,0,216,255,
205,0,248,0,217,255,205,0,249,0,218,255,205,0,250,0,219,255,205,0,251,0,220,255,204,0,252,0,220,255,204,0,253,0,221,255,204,0,254,0,222,255,204,0,255,0,223,255,203,0,0 };
-const char* misoregular_ttf = (const char*) temp_bfd04473;
+const char* misoregular_ttf = (const char*) temp_binary_data_12;
//================== miso-serialized ==================
-static const unsigned char temp_263ed5c5[] =
+static const unsigned char temp_binary_data_13[] =
{ 120,156,236,221,11,252,253,197,180,63,254,79,244,237,170,139,164,123,73,55,116,165,146,240,221,239,175,168,148,75,95,145,144,16,187,143,67,246,231,155,173,155,131,82,169,164,72,233,34,149,110,18,37,183,82,74,159,253,222,137,238,36,33,169,164,66,116,145,
20,161,19,254,243,124,205,222,31,250,31,231,156,56,156,195,227,119,122,60,62,205,250,238,247,204,154,153,53,51,107,214,90,179,102,205,139,223,188,219,174,19,19,19,231,156,250,226,57,171,78,252,161,64,243,77,28,59,103,195,102,222,228,163,70,233,163,71,
233,252,163,116,214,40,93,96,148,46,56,74,23,26,165,11,143,210,69,70,233,162,163,244,49,163,116,177,81,186,248,40,93,98,148,46,57,74,31,59,74,151,26,165,143,27,165,75,143,210,199,143,210,101,70,233,178,163,116,185,81,186,252,40,93,97,148,174,56,74,87,
@@ -6270,10 +6270,10 @@ static const unsigned char temp_263ed5c5[] =
219,114,86,91,239,25,109,89,219,189,161,215,207,60,247,238,205,109,203,166,45,119,111,203,250,157,123,151,118,230,189,119,251,157,251,182,245,247,109,219,239,219,214,223,183,212,95,163,80,149,125,75,61,229,188,222,155,243,251,188,182,254,188,182,254,
188,182,254,188,82,223,122,206,43,245,149,251,181,245,246,107,235,237,215,214,219,175,212,91,173,244,183,95,169,167,124,91,91,239,109,109,189,203,123,251,166,252,89,91,222,212,150,255,15,63,201,76,247,0,0 };
-const char* misoserialized = (const char*) temp_263ed5c5;
+const char* misoserialized = (const char*) temp_binary_data_13;
//================== nordic.ttf ==================
-static const unsigned char temp_bcaa94b9[] =
+static const unsigned char temp_binary_data_14[] =
{ 0,1,0,0,0,14,0,128,0,3,0,96,79,83,47,50,123,137,164,77,0,0,1,136,0,0,0,86,99,109,97,112,54,197,178,209,0,0,31,240,0,0,1,202,99,118,116,32,15,192,16,0,0,0,26,184,0,0,2,0,102,112,103,109,1,82,156,24,0,0,28,184,0,0,0,179,103,97,115,112,0,23,0,6,0,0,26,168,
0,0,0,16,103,108,121,102,108,103,13,174,0,0,40,168,0,0,51,44,104,101,97,100,98,133,67,155,0,0,0,236,0,0,0,54,104,104,101,97,6,68,3,192,0,0,1,36,0,0,0,36,104,109,116,120,180,81,19,127,0,0,37,52,0,0,3,116,108,111,99,97,0,33,207,92,0,0,33,188,0,0,3,120,
109,97,120,112,24,248,0,170,0,0,1,72,0,0,0,32,110,97,109,101,185,229,179,231,0,0,1,224,0,0,24,198,112,111,115,116,255,163,0,48,0,0,1,104,0,0,0,32,112,114,101,112,15,37,62,165,0,0,29,108,0,0,2,130,0,1,0,0,0,5,0,0,166,84,57,97,95,15,60,245,0,1,4,0,0,0,
@@ -6514,10 +6514,10 @@ static const unsigned char temp_bcaa94b9[] =
6,7,6,39,53,54,55,51,22,23,185,30,74,27,4,1,23,86,22,3,204,31,74,27,4,2,22,86,22,4,2,126,88,56,12,28,214,22,3,3,22,86,88,56,12,28,214,22,3,3,22,0,0,0,2,0,50,1,226,1,133,2,237,0,10,0,21,0,3,0,48,49,19,6,7,6,39,53,54,55,51,22,31,1,6,7,6,39,53,54,55,51,
22,23,185,30,74,27,4,1,23,86,22,3,204,31,74,27,4,2,22,86,22,4,2,126,88,56,12,28,214,22,3,3,22,86,88,56,12,28,214,22,3,3,22,0,0,0,0 };
-const char* nordic_ttf = (const char*) temp_bcaa94b9;
+const char* nordic_ttf = (const char*) temp_binary_data_14;
//================== ostrich.ttf ==================
-static const unsigned char temp_189d4f30[] =
+static const unsigned char temp_binary_data_15[] =
{ 0,1,0,0,0,16,1,0,0,4,0,0,70,70,84,77,91,245,3,49,0,0,1,12,0,0,0,28,71,68,69,70,0,172,0,3,0,0,1,40,0,0,0,32,79,83,47,50,147,188,109,12,0,0,1,72,0,0,0,96,99,109,97,112,43,226,86,187,0,0,1,168,0,0,1,162,99,118,116,32,13,119,11,140,0,0,3,76,0,0,0,34,102,
112,103,109,15,180,47,167,0,0,3,112,0,0,2,101,103,97,115,112,0,0,0,16,0,0,5,216,0,0,0,8,103,108,121,102,143,7,37,77,0,0,5,224,0,0,69,164,104,101,97,100,248,105,156,174,0,0,75,132,0,0,0,54,104,104,101,97,11,58,5,41,0,0,75,188,0,0,0,36,104,109,116,120,
102,145,6,220,0,0,75,224,0,0,1,252,108,111,99,97,36,35,54,72,0,0,77,220,0,0,1,0,109,97,120,112,1,156,1,252,0,0,78,220,0,0,0,32,110,97,109,101,44,100,71,147,0,0,78,252,0,0,2,6,112,111,115,116,68,107,181,125,0,0,81,4,0,0,1,187,112,114,101,112,2,242,181,
@@ -6769,10 +6769,10 @@ static const unsigned char temp_189d4f30[] =
32,69,176,3,43,68,176,12,32,69,186,0,11,127,255,0,2,43,177,3,70,118,43,68,176,13,32,69,178,12,9,2,43,177,3,70,118,43,68,176,14,32,69,178,13,8,2,43,177,3,70,118,43,68,176,15,32,69,186,0,14,1,56,0,2,43,177,3,70,118,43,68,176,16,32,69,178,15,7,2,43,177,
3,70,118,43,68,89,176,20,43,0,0,0,0 };
-const char* ostrich_ttf = (const char*) temp_189d4f30;
+const char* ostrich_ttf = (const char*) temp_binary_data_15;
//================== silkscreen-serialized ==================
-static const unsigned char temp_4c9cd71c[] =
+static const unsigned char temp_binary_data_16[] =
{ 120,156,237,155,7,148,20,69,16,134,215,156,48,39,80,84,204,57,160,120,162,48,123,42,98,206,120,230,132,99,171,200,238,170,140,162,24,49,97,206,57,231,128,57,158,1,238,206,132,1,195,153,21,207,128,17,179,232,138,138,9,39,117,119,245,116,207,78,47,252,
199,221,170,188,199,123,205,78,239,215,213,85,213,85,93,53,203,128,65,133,193,158,59,132,177,82,46,151,235,217,165,95,125,143,220,20,127,52,131,255,55,87,95,42,246,26,57,185,175,63,26,94,8,6,254,227,150,66,145,77,204,139,65,240,200,45,142,27,59,62,239,
63,31,93,8,6,19,242,125,90,252,217,195,28,49,8,30,185,108,70,56,113,38,56,113,102,56,113,22,56,113,86,56,113,54,56,113,118,56,113,14,56,113,78,56,113,46,56,177,11,156,56,55,156,56,15,156,56,47,156,56,31,156,56,63,156,184,0,156,184,32,156,184,16,156,184,
@@ -6807,10 +6807,10 @@ static const unsigned char temp_4c9cd71c[] =
2,78,156,0,39,126,9,39,126,5,39,126,13,39,126,3,39,126,11,39,126,7,39,126,15,39,254,0,39,78,132,19,127,132,19,127,130,19,203,112,226,207,112,226,36,56,241,23,56,241,87,56,241,55,56,113,50,156,248,59,156,248,7,156,248,39,156,248,23,156,248,55,156,56,5,
78,12,128,255,0,255,66,227,172,0,0 };
-const char* silkscreenserialized = (const char*) temp_4c9cd71c;
+const char* silkscreenserialized = (const char*) temp_binary_data_16;
//================== silkscreen.ttf ==================
-static const unsigned char temp_2de8efad[] =
+static const unsigned char temp_binary_data_17[] =
{ 0,1,0,0,0,15,0,48,0,3,0,192,79,83,47,50,121,166,129,146,0,0,64,208,0,0,0,78,80,67,76,84,173,52,110,22,0,0,65,32,0,0,0,54,99,109,97,112,198,58,142,190,0,0,61,32,0,0,2,4,99,118,116,32,7,83,8,77,0,0,64,172,0,0,0,36,102,112,103,109,152,92,220,162,0,0,3,224,
0,0,0,100,103,108,121,102,48,157,174,66,0,0,4,152,0,0,54,18,104,100,109,120,137,166,202,30,0,0,65,88,0,0,6,72,104,101,97,100,213,88,95,61,0,0,0,252,0,0,0,54,104,104,101,97,2,213,6,14,0,0,1,52,0,0,0,36,104,109,116,120,44,25,4,90,0,0,63,36,0,0,1,136,108,
111,99,97,0,10,37,204,0,0,58,172,0,0,1,140,109,97,120,112,1,9,0,219,0,0,1,88,0,0,0,32,110,97,109,101,63,98,60,192,0,0,1,120,0,0,2,103,112,111,115,116,9,71,9,62,0,0,60,56,0,0,0,230,112,114,101,112,5,176,112,7,0,0,4,68,0,0,0,83,0,1,0,0,0,1,0,0,124,56,31,
@@ -7017,10 +7017,10 @@ static const unsigned char temp_2de8efad[] =
14,16,19,16,16,16,16,14,14,16,16,8,16,16,14,19,19,16,16,16,16,16,14,16,19,19,19,19,14,11,14,11,14,16,11,16,16,16,16,14,14,16,16,8,16,16,14,19,19,16,16,16,16,16,14,16,19,19,19,19,14,14,8,14,16,24,20,12,0,11,11,9,14,20,17,20,17,9,11,11,20,20,9,14,6,14,
17,14,17,17,17,17,17,17,17,17,6,9,14,14,14,17,20,17,17,17,17,14,14,17,17,9,17,17,14,20,20,17,17,17,17,17,14,17,20,20,20,20,14,11,14,11,14,17,11,17,17,17,17,14,14,17,17,9,17,17,14,20,20,17,17,17,17,17,14,17,20,20,20,20,14,14,9,14,17,0,0 };
-const char* silkscreen_ttf = (const char*) temp_2de8efad;
+const char* silkscreen_ttf = (const char*) temp_binary_data_17;
//================== ArduinoIcon.png ==================
-static const unsigned char temp_dd579bb9[] =
+static const unsigned char temp_binary_data_18[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,6,47,0,0,4,111,8,6,0,0,0,96,133,119,144,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,10,79,105,67,67,80,80,104,111,116,111,115,104,111,112,32,73,67,67,32,112,114,111,102,105,108,101,
0,0,120,218,157,83,103,84,83,233,22,61,247,222,244,66,75,136,128,148,75,111,82,21,8,32,82,66,139,128,20,145,38,42,33,9,16,74,136,33,161,217,21,81,193,17,69,69,4,27,200,160,136,3,142,142,128,140,21,81,44,12,138,10,216,7,228,33,162,142,131,163,136,138,
202,251,225,123,163,107,214,188,247,230,205,254,181,215,62,231,172,243,157,179,207,7,192,8,12,150,72,51,81,53,128,12,169,66,30,17,224,131,199,196,198,225,228,46,64,129,10,36,112,0,16,8,179,100,33,115,253,35,1,0,248,126,60,60,43,34,192,7,190,0,1,120,211,
@@ -7809,10 +7809,10 @@ static const unsigned char temp_dd579bb9[] =
223,255,212,213,121,32,27,7,166,188,232,223,182,138,0,0,0,0,0,32,99,109,205,214,129,253,183,63,255,249,207,94,222,126,236,75,57,185,187,67,8,23,75,2,0,0,0,0,32,163,252,123,8,225,191,255,169,171,243,68,54,14,206,157,23,76,13,33,108,19,3,0,0,0,0,64,198,
248,117,8,97,92,182,22,23,33,184,243,130,147,190,148,147,59,46,132,48,51,132,240,223,165,1,0,0,0,0,16,73,39,66,8,91,255,212,213,249,84,182,15,244,255,63,0,215,70,173,194,31,62,235,52,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* ArduinoIcon_png = (const char*) temp_dd579bb9;
+const char* ArduinoIcon_png = (const char*) temp_binary_data_18;
//================== OpenEphysBoardLogoBlack.png ==================
-static const unsigned char temp_ef366d73[] =
+static const unsigned char temp_binary_data_19[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,7,115,0,0,5,27,8,6,0,0,0,52,231,138,245,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,140,165,73,68,65,84,120,218,236,221,209,149,19,71,162,199,225,54,231,30,29,233,9,54,2,228,8,152,141,96,180,17,120,110,4,200,17,236,108,4,30,71,176,16,129,69,4,59,68,176,34,2,102,34,176,136,224,194,147,116,244,194,173,178,
122,188,44,6,3,51,211,221,127,73,223,119,78,185,13,6,117,119,169,103,95,126,91,213,223,189,127,255,190,33,195,104,60,121,84,14,39,237,47,103,31,252,167,217,71,127,116,90,198,99,51,6,0,0,0,0,0,192,87,122,83,198,234,163,223,91,126,226,223,175,182,155,245,
@@ -8286,10 +8286,10 @@ static const unsigned char temp_ef366d73[] =
38,188,253,43,192,21,222,214,75,152,155,65,10,120,183,225,238,40,149,248,181,93,188,0,0,0,0,0,0,228,118,87,109,194,218,69,42,243,248,20,220,54,79,152,91,152,116,76,115,188,135,119,148,74,245,197,215,187,226,247,220,209,11,0,0,0,0,0,192,215,196,99,144,
23,247,124,127,177,243,253,237,215,183,235,213,242,218,144,149,227,255,1,23,88,237,144,160,48,169,201,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* OpenEphysBoardLogoBlack_png = (const char*) temp_ef366d73;
+const char* OpenEphysBoardLogoBlack_png = (const char*) temp_binary_data_19;
//================== OpenEphysBoardLogoGray.png ==================
-static const unsigned char temp_76e84745[] =
+static const unsigned char temp_binary_data_20[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,7,115,0,0,5,27,8,6,0,0,0,52,231,138,245,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,139,144,73,68,65,84,120,218,236,221,223,117,220,198,193,198,97,68,39,247,100,7,98,42,16,115,133,75,174,43,16,191,10,180,174,192,76,5,166,43,8,85,129,86,21,132,170,32,171,203,185,50,89,65,168,14,168,10,242,13,188,160,163,
40,148,197,63,11,224,197,238,243,156,51,134,100,75,11,96,22,204,205,47,51,248,211,191,255,253,239,134,12,165,148,195,122,56,238,127,187,248,226,63,45,190,250,163,71,117,188,52,99,0,0,0,0,0,0,60,208,167,58,110,190,250,119,235,123,126,125,213,182,237,173,
@@ -8760,10 +8760,10 @@ static const unsigned char temp_76e84745[] =
194,221,105,190,210,239,85,241,2,0,0,0,0,0,80,218,125,179,13,107,55,249,90,167,187,224,182,127,194,220,202,228,109,154,211,57,188,211,124,53,127,249,253,190,244,103,206,232,5,0,0,0,0,0,224,107,210,54,200,155,7,254,124,179,247,231,187,223,223,133,16,110,
12,89,61,254,7,181,146,230,16,82,63,166,171,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* OpenEphysBoardLogoGray_png = (const char*) temp_76e84745;
+const char* OpenEphysBoardLogoGray_png = (const char*) temp_binary_data_20;
//================== RadioButtons-01.png ==================
-static const unsigned char temp_bcea9320[] =
+static const unsigned char temp_binary_data_21[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,32,0,0,0,19,8,6,0,0,0,241,148,15,247,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,191,73,68,65,84,120,218,196,150,219,78,19,81,20,134,255,61,199,118,128,136,209,132,150,27,98,226,133,70,99,104,69,206,82,18,9,166,49,122,161,9,23,92,250,4,190,129,190,130,207,161,55,106,76,19,37,86,40,162,40,109,154,84,4,
34,98,5,76,228,2,16,122,156,233,28,92,211,169,74,109,109,13,69,88,201,206,236,116,239,174,245,173,127,173,189,103,24,200,60,30,207,29,122,4,104,180,226,144,141,81,240,123,62,255,197,187,221,221,189,80,20,229,80,131,71,34,83,16,36,73,12,140,94,13,226,
@@ -8777,10 +8777,10 @@ static const unsigned char temp_bcea9320[] =
139,193,13,163,246,157,221,112,9,202,148,32,17,195,47,19,116,2,18,208,41,176,105,214,127,97,252,42,65,58,157,174,251,62,248,31,166,235,142,2,247,227,241,216,176,215,219,78,23,198,225,66,100,179,25,231,142,164,143,146,97,122,12,31,197,55,193,15,1,6,0,
156,20,41,102,255,70,71,224,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons01_png = (const char*) temp_bcea9320;
+const char* RadioButtons01_png = (const char*) temp_binary_data_21;
//================== RadioButtons-02.png ==================
-static const unsigned char temp_bcf8aaa1[] =
+static const unsigned char temp_binary_data_22[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,197,73,68,65,84,120,218,196,150,107,79,19,65,20,134,223,153,157,221,110,11,36,152,20,104,52,154,144,160,40,69,32,164,40,136,52,38,24,141,31,252,79,254,31,191,154,104,248,224,133,86,80,145,134,91,32,70,32,202,69,46,134,91,
111,123,233,94,60,179,106,44,180,24,109,19,152,228,100,119,178,115,206,115,230,61,115,38,203,98,177,216,43,156,211,16,137,129,219,247,70,70,146,103,14,78,165,198,33,20,69,129,22,10,157,57,92,114,133,34,8,174,105,167,46,98,140,228,81,200,132,15,159,230,
@@ -8794,10 +8794,10 @@ static const unsigned char temp_bcf8aaa1[] =
11,27,40,149,78,239,65,201,21,129,236,150,85,243,77,37,93,83,233,37,76,125,252,132,11,205,13,216,219,207,83,89,124,42,135,255,215,254,175,75,246,147,9,20,10,192,254,126,241,159,47,156,95,178,215,183,243,90,135,228,138,98,177,128,157,237,237,51,135,75,
46,163,63,153,39,231,245,39,243,67,128,1,0,60,21,103,165,70,150,193,96,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons02_png = (const char*) temp_bcf8aaa1;
+const char* RadioButtons02_png = (const char*) temp_binary_data_22;
//================== RadioButtons-03.png ==================
-static const unsigned char temp_bd06c222[] =
+static const unsigned char temp_binary_data_23[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,77,73,68,65,84,120,218,196,150,219,110,211,64,16,134,255,61,196,109,66,165,86,106,47,242,32,173,8,23,69,240,16,136,103,225,142,151,42,92,34,40,32,113,1,151,160,34,78,82,213,67,148,66,147,56,118,236,181,119,205,76,156,162,
172,157,22,25,161,116,164,141,226,221,153,249,230,228,149,69,183,219,125,129,91,18,189,187,119,247,193,254,254,253,149,131,15,15,95,65,43,165,16,172,173,173,28,206,92,173,52,193,131,160,118,40,37,32,4,45,126,16,75,172,11,192,209,42,230,171,49,92,51,92,
@@ -8809,10 +8809,10 @@ static const unsigned char temp_bd06c222[] =
253,155,136,179,130,202,88,194,31,61,126,114,163,110,191,63,32,93,202,60,245,225,204,45,203,158,54,203,60,163,88,191,255,56,193,206,246,75,186,44,236,245,21,162,183,228,232,243,49,205,71,74,109,170,102,254,143,101,103,57,59,51,56,120,254,14,66,220,208,
30,190,255,169,31,214,214,111,160,121,217,155,103,254,63,132,185,58,142,35,244,207,207,87,14,103,174,160,47,153,167,183,245,37,243,91,128,1,0,11,149,65,182,96,70,58,8,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons03_png = (const char*) temp_bd06c222;
+const char* RadioButtons03_png = (const char*) temp_binary_data_23;
//================== RadioButtons-04.png ==================
-static const unsigned char temp_bd14d9a3[] =
+static const unsigned char temp_binary_data_24[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,165,73,68,65,84,120,218,196,150,237,79,211,80,24,197,207,109,111,1,157,74,50,144,76,226,198,139,128,2,66,162,66,136,31,48,42,248,217,232,95,228,127,102,2,74,130,38,203,192,12,84,134,1,231,88,145,142,194,218,117,107,215,23,
159,219,161,216,161,198,200,132,155,52,109,239,189,233,239,60,231,60,109,202,18,137,196,75,156,211,224,83,211,51,15,103,103,31,156,57,120,113,113,1,92,150,101,180,181,183,159,57,92,112,185,204,9,222,214,118,98,145,177,227,235,32,248,15,112,46,224,146,
@@ -8825,10 +8825,10 @@ static const unsigned char temp_bd14d9a3[] =
83,92,187,240,93,35,132,215,5,220,9,154,224,30,184,235,122,161,255,167,29,66,196,171,165,45,164,51,219,152,156,184,142,241,241,41,112,101,8,165,210,14,89,236,208,155,19,245,79,112,27,182,219,118,203,190,92,66,196,194,98,14,233,244,39,18,208,143,106,213,
167,134,182,195,202,209,74,219,255,52,42,21,134,61,109,61,188,246,253,224,196,7,233,200,246,214,86,254,183,67,112,185,101,85,176,171,170,103,14,23,92,70,127,50,47,206,235,79,230,155,0,3,0,91,7,91,249,23,102,61,167,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons04_png = (const char*) temp_bd14d9a3;
+const char* RadioButtons04_png = (const char*) temp_binary_data_24;
//================== RadioButtons-05.png ==================
-static const unsigned char temp_bd22f124[] =
+static const unsigned char temp_binary_data_25[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,30,0,0,0,19,8,6,0,0,0,135,174,189,124,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,10,79,105,67,67,80,80,104,111,116,111,115,104,111,112,32,73,67,67,32,112,114,111,102,105,108,101,0,
0,120,218,157,83,103,84,83,233,22,61,247,222,244,66,75,136,128,148,75,111,82,21,8,32,82,66,139,128,20,145,38,42,33,9,16,74,136,33,161,217,21,81,193,17,69,69,4,27,200,160,136,3,142,142,128,140,21,81,44,12,138,10,216,7,228,33,162,142,131,163,136,138,202,
251,225,123,163,107,214,188,247,230,205,254,181,215,62,231,172,243,157,179,207,7,192,8,12,150,72,51,81,53,128,12,169,66,30,17,224,131,199,196,198,225,228,46,64,129,10,36,112,0,16,8,179,100,33,115,253,35,1,0,248,126,60,60,43,34,192,7,190,0,1,120,211,11,
@@ -8880,10 +8880,10 @@ static const unsigned char temp_bd22f124[] =
162,63,207,207,191,252,78,47,76,49,6,14,15,19,62,191,243,5,198,88,140,57,95,51,207,205,73,170,147,228,66,176,16,240,240,225,99,176,159,49,24,68,52,91,17,113,60,230,203,175,118,209,74,32,4,164,153,37,207,237,84,135,186,200,254,53,213,207,44,73,224,94,
237,224,164,117,254,119,192,197,96,131,206,243,127,62,241,255,97,121,158,163,163,104,72,171,217,188,84,112,20,13,17,213,106,245,211,23,241,3,249,115,0,245,214,95,36,216,96,243,208,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons05_png = (const char*) temp_bd22f124;
+const char* RadioButtons05_png = (const char*) temp_binary_data_25;
//================== RadioButtons_neutral-01.png ==================
-static const unsigned char temp_fbf03e98[] =
+static const unsigned char temp_binary_data_26[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,32,0,0,0,19,8,6,0,0,0,241,148,15,247,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,103,73,68,65,84,120,218,196,86,221,75,83,97,28,126,206,217,217,161,177,205,64,177,121,154,125,96,132,23,125,144,36,117,219,77,222,108,115,36,74,11,22,140,210,182,187,162,174,130,46,250,83,6,121,83,162,99,69,69,17,164,77,152,
168,67,48,203,106,141,105,160,172,109,110,147,181,185,243,181,211,123,142,37,68,251,10,199,250,193,15,94,206,251,62,239,243,252,62,248,157,151,82,20,5,28,199,221,49,27,141,55,201,218,140,22,27,67,200,31,234,245,250,251,54,199,32,123,200,194,181,148,252,
@@ -8896,10 +8896,10 @@ static const unsigned char temp_fbf03e98[] =
209,58,51,61,253,79,231,101,53,3,162,36,255,136,126,90,197,177,158,19,45,255,25,169,101,99,120,129,127,176,188,242,62,176,83,42,193,108,110,237,123,68,18,69,80,191,94,68,151,140,6,131,75,71,211,7,90,157,133,159,2,12,0,238,13,9,71,19,58,158,165,0,0,0,
0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_neutral01_png = (const char*) temp_fbf03e98;
+const char* RadioButtons_neutral01_png = (const char*) temp_binary_data_26;
//================== RadioButtons_neutral-02.png ==================
-static const unsigned char temp_fbfe5619[] =
+static const unsigned char temp_binary_data_27[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,54,73,68,65,84,120,218,196,150,207,79,19,65,20,199,191,187,157,182,86,131,166,254,72,69,19,13,141,137,49,30,12,218,131,225,102,106,140,129,112,52,210,150,67,19,53,130,240,223,104,188,123,210,196,171,98,148,6,127,20,104,145,
32,28,48,129,130,201,66,65,91,160,148,110,161,178,219,157,226,204,28,56,176,187,13,182,164,125,201,203,190,153,247,94,62,243,230,205,76,86,186,226,247,43,104,146,144,182,54,255,229,59,119,239,53,28,252,57,246,9,196,225,112,192,229,118,55,28,206,185,68,
@@ -8911,10 +8911,10 @@ static const unsigned char temp_fbfe5619[] =
158,112,24,14,246,30,124,249,26,199,204,244,76,213,60,81,121,133,87,94,7,156,75,60,62,42,212,235,245,34,111,113,126,44,225,188,114,42,122,174,29,201,123,157,205,102,14,29,75,69,207,217,150,233,53,246,188,30,225,92,98,148,203,88,77,47,55,28,206,185,68,
85,11,175,152,54,229,79,230,159,0,3,0,178,38,58,166,235,164,14,20,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_neutral02_png = (const char*) temp_fbfe5619;
+const char* RadioButtons_neutral02_png = (const char*) temp_binary_data_27;
//================== RadioButtons_neutral-03.png ==================
-static const unsigned char temp_fc0c6d9a[] =
+static const unsigned char temp_binary_data_28[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,1,165,73,68,65,84,120,218,196,150,109,75,194,80,20,199,207,220,221,172,12,21,122,130,40,76,139,94,7,245,162,122,19,73,244,213,194,143,209,75,251,0,69,169,212,103,136,232,77,132,154,104,69,234,210,72,216,195,189,235,222,13,133,
218,217,70,19,244,63,198,6,255,115,206,111,231,222,187,187,73,91,185,92,13,166,36,146,205,230,50,199,39,167,19,7,223,150,111,128,200,178,12,106,60,62,113,184,224,146,88,44,6,241,41,192,5,215,129,43,138,226,49,91,141,58,88,166,25,88,192,182,25,100,54,
@@ -8924,10 +8924,10 @@ static const unsigned char temp_fc0c6d9a[] =
66,33,48,174,82,42,65,235,237,3,239,156,137,206,35,192,219,29,13,170,181,122,104,220,211,115,21,173,47,184,132,58,115,254,127,184,200,185,40,22,35,239,237,212,153,115,190,98,141,8,115,62,174,4,151,136,143,71,179,241,50,113,184,224,146,126,191,119,206,
207,169,252,201,252,8,48,0,227,76,197,247,89,122,10,69,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_neutral03_png = (const char*) temp_fc0c6d9a;
+const char* RadioButtons_neutral03_png = (const char*) temp_binary_data_28;
//================== RadioButtons_neutral-04.png ==================
-static const unsigned char temp_fc1a851b[] =
+static const unsigned char temp_binary_data_29[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,27,73,68,65,84,120,218,196,150,109,79,211,80,24,134,239,182,167,29,219,50,100,176,110,200,48,203,22,127,5,209,15,4,162,63,68,72,36,209,175,26,241,215,248,7,28,159,36,129,69,92,228,69,167,113,250,9,156,16,141,14,98,125,9,91,
11,117,93,123,138,61,167,209,4,219,17,18,203,246,36,39,79,211,59,231,190,158,231,188,52,21,174,150,74,159,48,160,32,197,98,169,48,61,123,163,239,224,181,202,10,136,36,73,80,98,177,190,195,25,151,136,162,136,216,0,224,140,203,225,178,44,7,196,159,223,
@@ -8939,10 +8939,10 @@ static const unsigned char temp_fc1a851b[] =
106,149,103,195,180,60,111,59,212,159,113,9,229,123,110,93,200,247,251,217,218,211,158,26,229,123,78,233,185,14,87,212,193,184,132,221,229,253,47,159,251,14,103,92,162,235,237,71,222,24,200,159,204,111,1,6,0,203,214,249,255,62,204,159,178,0,0,0,0,73,
69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_neutral04_png = (const char*) temp_fc1a851b;
+const char* RadioButtons_neutral04_png = (const char*) temp_binary_data_29;
//================== RadioButtons_neutral-05.png ==================
-static const unsigned char temp_fc289c9c[] =
+static const unsigned char temp_binary_data_30[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,30,0,0,0,19,8,6,0,0,0,135,174,189,124,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,10,79,105,67,67,80,80,104,111,116,111,115,104,111,112,32,73,67,67,32,112,114,111,102,105,108,101,0,
0,120,218,157,83,103,84,83,233,22,61,247,222,244,66,75,136,128,148,75,111,82,21,8,32,82,66,139,128,20,145,38,42,33,9,16,74,136,33,161,217,21,81,193,17,69,69,4,27,200,160,136,3,142,142,128,140,21,81,44,12,138,10,216,7,228,33,162,142,131,163,136,138,202,
251,225,123,163,107,214,188,247,230,205,254,181,215,62,231,172,243,157,179,207,7,192,8,12,150,72,51,81,53,128,12,169,66,30,17,224,131,199,196,198,225,228,46,64,129,10,36,112,0,16,8,179,100,33,115,253,35,1,0,248,126,60,60,43,34,192,7,190,0,1,120,211,11,
@@ -8993,10 +8993,10 @@ static const unsigned char temp_fc289c9c[] =
229,42,213,143,142,62,250,227,151,203,24,65,139,24,130,192,255,173,248,237,236,204,95,123,50,69,12,90,68,234,14,193,191,10,17,65,135,229,50,139,153,249,134,130,195,114,25,157,207,187,183,242,121,183,225,63,144,239,3,0,218,200,55,245,184,64,106,163,0,
0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_neutral05_png = (const char*) temp_fc289c9c;
+const char* RadioButtons_neutral05_png = (const char*) temp_binary_data_30;
//================== RadioButtons_selected-01.png ==================
-static const unsigned char temp_789007d8[] =
+static const unsigned char temp_binary_data_31[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,32,0,0,0,19,8,6,0,0,0,241,148,15,247,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,134,73,68,65,84,120,218,196,86,75,104,19,81,20,61,47,153,76,147,104,90,146,214,106,68,65,116,81,116,99,43,72,109,87,21,139,65,171,82,161,152,44,20,233,39,70,10,69,219,69,161,16,138,96,65,186,112,227,82,139,248,87,106,53,169,
46,20,252,130,138,40,45,88,41,46,130,198,66,193,79,98,205,111,38,49,153,207,115,146,148,34,152,31,166,140,15,238,48,188,251,206,187,231,157,185,239,222,33,148,82,88,173,214,147,235,170,140,221,162,76,77,80,121,48,74,240,83,134,10,118,104,120,231,6,118,
@@ -9009,10 +9009,10 @@ static const unsigned char temp_789007d8[] =
201,56,82,41,9,166,77,13,152,187,228,46,9,35,137,52,171,0,207,211,101,41,173,252,195,9,229,57,81,242,122,81,82,20,72,73,50,247,52,160,67,163,73,84,189,25,101,114,32,250,75,112,79,250,5,79,108,173,1,171,85,110,138,73,65,6,89,252,35,106,169,54,232,28,74,
103,210,171,173,194,111,1,6,0,169,191,241,34,56,210,107,35,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected01_png = (const char*) temp_789007d8;
+const char* RadioButtons_selected01_png = (const char*) temp_binary_data_31;
//================== RadioButtons_selected-02.png ==================
-static const unsigned char temp_789e1f59[] =
+static const unsigned char temp_binary_data_32[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,102,73,68,65,84,120,218,196,150,77,104,19,65,20,199,255,187,153,181,201,134,212,24,42,126,32,86,15,133,10,69,26,40,162,17,84,68,41,10,18,84,90,171,205,69,37,135,74,241,82,240,3,188,120,241,100,241,224,199,69,17,60,104,75,
43,22,105,197,70,35,226,71,139,7,17,63,138,20,139,208,18,164,24,107,178,105,178,155,110,146,221,117,102,11,10,238,166,132,180,164,11,111,118,118,222,188,249,241,248,207,155,89,210,88,183,121,18,203,244,144,237,155,106,106,187,154,86,85,28,220,253,62,
@@ -9025,10 +9025,10 @@ static const unsigned char temp_789e1f59[] =
177,168,3,67,121,209,135,31,212,156,94,31,213,57,81,82,12,227,146,130,166,67,150,141,37,57,175,101,249,119,201,115,25,215,212,92,206,26,21,191,88,76,205,213,188,142,47,169,202,223,106,140,75,98,178,113,47,38,107,203,242,39,243,71,128,1,0,163,90,231,150,
52,232,169,252,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected02_png = (const char*) temp_789e1f59;
+const char* RadioButtons_selected02_png = (const char*) temp_binary_data_32;
//================== RadioButtons_selected-03.png ==================
-static const unsigned char temp_78ac36da[] =
+static const unsigned char temp_binary_data_33[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,1,190,73,68,65,84,120,218,196,150,189,79,194,80,20,197,207,43,79,144,26,163,68,6,29,140,50,24,29,77,208,196,56,56,184,57,27,157,116,112,116,246,223,80,255,5,227,226,234,224,199,164,51,241,35,58,56,104,116,129,176,16,48,10,161,
69,90,222,135,125,69,166,190,130,96,130,55,13,29,238,61,231,215,155,243,82,74,230,103,82,89,252,83,209,165,233,228,212,222,66,162,239,224,131,251,79,80,18,33,136,154,70,223,225,138,75,13,239,39,22,239,63,92,113,155,155,15,146,64,243,170,48,140,34,27,
@@ -9038,10 +9038,10 @@ static const unsigned char temp_78ac36da[] =
133,212,250,251,240,134,191,185,236,26,30,27,107,26,174,31,92,181,157,187,187,60,209,250,43,46,229,76,162,246,213,61,220,204,102,80,127,56,237,56,55,116,123,140,90,61,232,175,184,148,113,1,219,238,30,14,187,134,199,163,195,158,223,237,138,235,103,110,
247,176,249,95,203,207,220,105,8,60,85,250,255,175,166,184,52,111,203,227,188,205,255,229,75,230,91,128,1,0,165,175,191,223,100,163,205,167,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected03_png = (const char*) temp_78ac36da;
+const char* RadioButtons_selected03_png = (const char*) temp_binary_data_33;
//================== RadioButtons_selected-04.png ==================
-static const unsigned char temp_78ba4e5b[] =
+static const unsigned char temp_binary_data_34[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,100,73,68,65,84,120,218,196,150,77,104,211,96,24,199,255,111,154,102,205,92,221,186,85,17,71,173,58,198,188,232,6,14,84,148,162,172,226,7,76,70,65,119,216,209,195,64,60,41,130,99,87,15,122,24,168,7,5,79,83,97,8,165,155,122,
17,199,16,25,58,61,104,81,118,152,173,171,19,183,22,109,221,154,146,164,31,107,154,248,38,21,81,147,94,180,235,2,239,75,194,147,252,127,255,231,125,222,143,144,174,246,29,159,177,78,23,187,127,187,219,123,177,219,85,115,240,200,155,52,88,98,35,224,234,
@@ -9054,10 +9054,10 @@ static const unsigned char temp_78ba4e5b[] =
225,201,103,241,213,66,95,231,178,74,73,133,44,107,107,178,127,71,158,62,174,24,211,185,70,205,229,156,86,243,131,197,168,121,161,168,98,54,83,251,83,77,231,146,206,157,219,70,215,235,79,230,135,0,3,0,71,200,242,251,63,187,157,122,0,0,0,0,73,69,78,68,
174,66,96,130,0,0 };
-const char* RadioButtons_selected04_png = (const char*) temp_78ba4e5b;
+const char* RadioButtons_selected04_png = (const char*) temp_binary_data_34;
//================== RadioButtons_selected-05.png ==================
-static const unsigned char temp_78c865dc[] =
+static const unsigned char temp_binary_data_35[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,30,0,0,0,19,8,6,0,0,0,135,174,189,124,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,10,79,105,67,67,80,80,104,111,116,111,115,104,111,112,32,73,67,67,32,112,114,111,102,105,108,101,0,
0,120,218,157,83,103,84,83,233,22,61,247,222,244,66,75,136,128,148,75,111,82,21,8,32,82,66,139,128,20,145,38,42,33,9,16,74,136,33,161,217,21,81,193,17,69,69,4,27,200,160,136,3,142,142,128,140,21,81,44,12,138,10,216,7,228,33,162,142,131,163,136,138,202,
251,225,123,163,107,214,188,247,230,205,254,181,215,62,231,172,243,157,179,207,7,192,8,12,150,72,51,81,53,128,12,169,66,30,17,224,131,199,196,198,225,228,46,64,129,10,36,112,0,16,8,179,100,33,115,253,35,1,0,248,126,60,60,43,34,192,7,190,0,1,120,211,11,
@@ -9108,10 +9108,10 @@ static const unsigned char temp_78c865dc[] =
67,47,42,109,196,133,131,158,216,185,173,106,221,105,147,89,82,137,21,26,39,18,154,254,235,201,213,60,226,64,151,202,198,52,99,235,6,155,222,129,127,54,50,165,90,172,177,249,59,150,208,89,45,165,141,110,69,109,250,195,137,253,157,172,168,141,30,48,99,
15,3,166,34,209,235,207,0,161,143,20,90,35,156,236,45,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected05_png = (const char*) temp_78c865dc;
+const char* RadioButtons_selected05_png = (const char*) temp_binary_data_35;
//================== RadioButtons_selected_over-01.png ==================
-static const unsigned char temp_a1a89ec7[] =
+static const unsigned char temp_binary_data_36[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,32,0,0,0,19,8,6,0,0,0,241,148,15,247,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,239,73,68,65,84,120,218,196,86,93,72,20,81,20,254,238,236,236,56,179,174,43,91,130,187,130,136,97,81,22,244,3,105,8,134,105,168,245,32,229,147,15,10,25,37,173,81,212,67,15,86,15,65,68,244,212,83,62,244,24,65,68,166,32,18,
132,63,69,17,82,61,20,171,65,81,216,139,144,238,34,106,59,59,251,51,51,247,118,103,86,130,220,137,149,86,182,129,195,12,115,206,61,223,119,190,57,247,204,37,140,49,4,131,193,75,213,91,188,251,240,31,46,145,131,223,80,138,164,129,211,117,85,82,169,34,
@@ -9125,10 +9125,10 @@ static const unsigned char temp_a1a89ec7[] =
210,200,69,104,11,12,70,130,75,111,58,47,213,51,4,0,45,145,231,72,227,242,106,99,67,8,38,77,148,214,236,194,252,232,29,104,81,10,211,2,167,127,95,102,242,166,180,21,136,199,55,103,184,171,35,195,246,76,128,201,96,234,185,135,164,97,114,5,210,38,85,167,
34,110,212,151,24,155,244,143,219,120,49,86,15,144,64,32,112,130,63,143,52,87,40,40,47,236,113,0,95,227,156,192,218,137,168,105,171,226,238,226,127,38,185,208,39,162,95,2,12,0,137,200,31,90,212,72,119,82,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected_over01_png = (const char*) temp_a1a89ec7;
+const char* RadioButtons_selected_over01_png = (const char*) temp_binary_data_36;
//================== RadioButtons_selected_over-02.png ==================
-static const unsigned char temp_a1b6b648[] =
+static const unsigned char temp_binary_data_37[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,216,73,68,65,84,120,218,196,149,79,72,84,65,28,199,191,51,239,237,190,221,183,184,166,22,145,84,70,137,97,90,33,107,218,22,129,18,17,29,162,67,66,209,255,78,117,137,14,29,11,138,200,110,17,116,232,84,80,116,8,73,41,188,164,
93,182,63,104,148,34,149,186,176,22,37,122,200,63,152,171,187,179,239,173,251,254,52,111,246,80,235,110,82,107,232,240,230,49,204,252,230,247,249,205,124,103,126,67,130,91,202,31,96,153,138,188,110,165,255,116,83,213,234,37,7,183,14,142,67,46,81,101,
@@ -9142,10 +9142,10 @@ static const unsigned char temp_a1b6b648[] =
152,175,120,22,147,161,155,152,126,23,130,33,206,65,238,121,14,87,54,121,150,74,104,139,72,214,60,247,176,246,86,140,116,182,65,45,41,130,30,157,134,153,180,97,25,88,240,254,59,92,217,48,45,48,246,31,94,138,152,141,217,169,169,116,251,47,220,57,92,161,
57,211,236,37,127,82,133,230,201,148,133,254,25,186,228,112,135,43,143,50,251,225,40,51,177,28,229,167,0,3,0,110,188,26,228,110,165,221,163,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected_over02_png = (const char*) temp_a1b6b648;
+const char* RadioButtons_selected_over02_png = (const char*) temp_binary_data_37;
//================== RadioButtons_selected_over-03.png ==================
-static const unsigned char temp_a1c4cdc9[] =
+static const unsigned char temp_binary_data_38[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,101,73,68,65,84,120,218,196,150,61,143,211,64,16,134,223,89,111,226,195,7,220,33,78,66,128,34,16,80,5,209,32,1,66,162,165,161,166,160,65,80,208,242,51,248,13,84,72,92,139,104,168,40,40,174,58,10,26,78,66,87,33,133,143,0,34,
137,20,146,216,107,39,142,215,203,172,147,226,108,135,128,41,114,43,37,78,188,51,243,236,188,51,187,54,221,108,94,122,142,67,26,178,177,117,252,193,221,203,167,86,14,126,185,223,129,60,233,73,220,56,99,86,14,223,249,36,33,133,67,112,143,136,242,44,21,
@@ -9158,10 +9158,10 @@ static const unsigned char temp_a1c4cdc9[] =
233,51,62,35,150,31,110,188,153,144,140,121,129,186,80,115,61,175,185,138,254,243,233,48,250,71,191,5,102,89,205,39,124,122,125,24,138,149,63,82,45,87,182,149,217,110,43,125,40,111,50,191,5,24,0,98,67,27,130,54,13,67,66,0,0,0,0,73,69,78,68,174,66,96,
130,0,0 };
-const char* RadioButtons_selected_over03_png = (const char*) temp_a1c4cdc9;
+const char* RadioButtons_selected_over03_png = (const char*) temp_binary_data_38;
//================== RadioButtons_selected_over-04.png ==================
-static const unsigned char temp_a1d2e54a[] =
+static const unsigned char temp_binary_data_39[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,31,0,0,0,19,8,6,0,0,0,104,108,214,66,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,2,211,73,68,65,84,120,218,196,150,205,75,20,97,28,199,191,207,204,179,186,179,187,90,90,184,100,25,26,43,149,122,176,64,74,33,37,148,204,50,12,234,84,135,110,65,151,110,29,252,51,58,132,208,169,46,5,33,228,91,210,139,96,16,
145,93,180,178,14,97,104,33,42,235,186,235,174,59,179,187,243,246,60,61,179,43,184,57,219,69,86,125,96,102,96,158,121,158,207,247,247,250,12,105,109,8,61,193,62,13,90,115,184,252,206,205,198,224,158,131,7,127,132,65,15,249,40,206,85,243,61,135,79,46,
@@ -9175,10 +9175,10 @@ static const unsigned char temp_a1d2e54a[] =
109,113,164,210,69,236,159,73,142,228,203,87,66,196,56,202,58,175,192,79,85,68,23,8,212,117,6,61,143,227,112,169,37,154,133,166,237,66,243,222,224,248,250,98,12,114,73,174,166,109,131,131,153,121,49,183,55,99,174,165,119,249,84,35,238,30,144,141,185,
110,50,204,38,164,61,63,82,29,46,93,212,248,211,69,205,222,151,63,153,191,2,12,0,199,181,70,142,38,155,205,86,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* RadioButtons_selected_over04_png = (const char*) temp_a1d2e54a;
+const char* RadioButtons_selected_over04_png = (const char*) temp_binary_data_39;
//================== RadioButtons_selected_over-05.png ==================
-static const unsigned char temp_a1e0fccb[] =
+static const unsigned char temp_binary_data_40[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,30,0,0,0,19,8,6,0,0,0,135,174,189,124,0,0,0,9,112,72,89,115,0,0,11,19,0,0,11,19,1,0,154,156,24,0,0,10,79,105,67,67,80,80,104,111,116,111,115,104,111,112,32,73,67,67,32,112,114,111,102,105,108,101,0,
0,120,218,157,83,103,84,83,233,22,61,247,222,244,66,75,136,128,148,75,111,82,21,8,32,82,66,139,128,20,145,38,42,33,9,16,74,136,33,161,217,21,81,193,17,69,69,4,27,200,160,136,3,142,142,128,140,21,81,44,12,138,10,216,7,228,33,162,142,131,163,136,138,202,
251,225,123,163,107,214,188,247,230,205,254,181,215,62,231,172,243,157,179,207,7,192,8,12,150,72,51,81,53,128,12,169,66,30,17,224,131,199,196,198,225,228,46,64,129,10,36,112,0,16,8,179,100,33,115,253,35,1,0,248,126,60,60,43,34,192,7,190,0,1,120,211,11,
@@ -9231,10 +9231,10 @@ static const unsigned char temp_a1e0fccb[] =
210,38,160,217,252,135,89,141,144,218,222,213,127,69,126,47,211,166,159,227,102,123,180,167,147,214,1,202,239,5,92,241,228,72,133,253,94,128,218,110,134,159,111,55,205,200,111,32,127,13,0,111,180,58,50,205,148,146,75,0,0,0,0,73,69,78,68,174,66,96,130,
0,0 };
-const char* RadioButtons_selected_over05_png = (const char*) temp_a1e0fccb;
+const char* RadioButtons_selected_over05_png = (const char*) temp_binary_data_40;
//================== noise_wave.png ==================
-static const unsigned char temp_2ada9d3c[] =
+static const unsigned char temp_binary_data_41[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,4,101,0,0,2,30,8,6,0,0,0,18,223,178,102,0,0,0,9,112,72,89,115,0,0,23,18,0,0,23,18,1,103,159,210,82,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,76,229,73,68,65,84,120,218,236,221,235,149,21,55,214,48,96,13,203,255,221,95,4,212,68,64,59,2,202,17,24,71,48,77,4,47,142,192,77,4,120,34,160,39,2,112,4,20,17,24,34,112,57,2,67,4,243,181,56,167,135,6,250,114,46,117,145,180,
159,103,173,90,96,3,125,78,237,146,84,210,46,149,244,143,4,0,0,0,172,229,228,242,56,189,60,186,237,113,155,225,242,248,112,121,188,19,50,0,0,0,128,253,229,36,204,217,229,241,242,242,248,243,242,248,239,1,199,155,203,227,60,109,146,57,0,0,0,0,220,225,
@@ -9516,10 +9516,10 @@ static const unsigned char temp_2ada9d3c[] =
73,212,228,227,97,186,249,117,163,15,151,199,251,203,99,220,30,131,176,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
176,175,255,47,192,0,205,180,140,11,223,168,97,120,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* noise_wave_png = (const char*) temp_2ada9d3c;
+const char* noise_wave_png = (const char*) temp_binary_data_41;
//================== saw_wave.png ==================
-static const unsigned char temp_fad5260d[] =
+static const unsigned char temp_binary_data_42[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,4,180,0,0,2,143,8,6,0,0,0,116,54,147,247,0,0,0,9,112,72,89,115,0,0,23,18,0,0,23,18,1,103,159,210,82,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,41,190,73,68,65,84,120,218,236,221,141,149,212,102,186,174,225,103,38,129,211,206,64,206,0,71,176,69,6,56,130,45,34,216,16,1,69,4,248,68,208,58,17,152,12,90,19,1,236,8,80,6,144,129,143,100,53,174,6,131,145,212,245,163,159,
235,90,235,93,94,158,25,51,174,183,170,87,21,55,42,125,9,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,151,242,
@@ -9661,10 +9661,10 @@ static const unsigned char temp_fad5260d[] =
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,96,231,254,191,0,3,0,11,98,146,161,132,82,43,233,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* saw_wave_png = (const char*) temp_fad5260d;
+const char* saw_wave_png = (const char*) temp_binary_data_42;
//================== sine_wave.png ==================
-static const unsigned char temp_eb0332c3[] =
+static const unsigned char temp_binary_data_43[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,4,180,0,0,2,171,8,6,0,0,0,232,11,212,215,0,0,0,9,112,72,89,115,0,0,23,18,0,0,23,18,1,103,159,210,82,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,49,204,73,68,65,84,120,218,236,221,175,151,36,199,149,40,224,24,205,3,122,200,13,197,156,203,196,92,102,102,78,49,9,109,137,237,178,52,123,102,229,191,96,211,232,157,69,101,182,176,198,200,107,84,18,178,141,170,133,158,88,
143,153,30,170,22,211,67,51,98,54,242,203,112,85,107,122,52,61,221,153,89,249,43,50,191,239,156,123,122,108,31,219,163,232,200,31,113,51,238,141,15,2,0,0,0,0,36,228,3,67,0,0,0,0,64,74,36,180,0,0,0,0,72,138,132,22,0,0,0,0,73,145,208,2,0,0,0,32,41,18,90,
@@ -9837,10 +9837,10 @@ static const unsigned char temp_eb0332c3[] =
104,1,0,0,0,144,20,9,45,0,0,0,0,146,34,161,5,0,0,0,64,82,36,180,0,0,0,0,72,138,132,22,0,0,0,0,73,145,208,2,0,0,0,32,41,18,90,0,0,0,0,36,69,66,11,0,0,0,128,164,72,104,1,0,0,0,144,20,9,45,0,0,0,0,146,242,255,5,24,0,142,248,78,14,98,33,228,71,0,0,0,0,73,
69,78,68,174,66,96,130,0,0 };
-const char* sine_wave_png = (const char*) temp_eb0332c3;
+const char* sine_wave_png = (const char*) temp_binary_data_43;
//================== square_wave.png ==================
-static const unsigned char temp_727226f3[] =
+static const unsigned char temp_binary_data_44[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,4,164,0,0,2,171,8,6,0,0,0,207,165,85,63,0,0,0,9,112,72,89,115,0,0,23,18,0,0,23,18,1,103,159,210,82,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,23,205,73,68,65,84,120,218,236,221,63,146,148,199,1,198,225,214,138,64,153,55,116,230,225,4,94,157,128,209,9,88,78,160,37,115,6,156,0,113,2,164,208,17,67,228,114,36,136,28,50,202,156,105,201,148,121,148,217,25,206,164,204,
221,254,190,45,244,7,73,32,161,151,233,238,231,169,234,98,237,64,59,221,223,4,83,191,237,238,41,5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
@@ -9911,10 +9911,10 @@ static const unsigned char temp_727226f3[] =
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,240,14,253,79,128,1,0,153,2,27,8,33,213,49,244,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* square_wave_png = (const char*) temp_727226f3;
+const char* square_wave_png = (const char*) temp_binary_data_44;
//================== triangle_wave.png ==================
-static const unsigned char temp_3825ab28[] =
+static const unsigned char temp_binary_data_45[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,4,172,0,0,2,113,8,6,0,0,0,111,215,42,130,0,0,0,9,112,72,89,115,0,0,23,18,0,0,23,18,1,103,159,210,82,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,32,173,73,68,65,84,120,218,236,221,251,145,85,199,122,198,225,214,113,2,100,224,9,129,12,204,201,128,16,94,101,64,8,100,160,16,80,6,132,128,28,1,114,4,216,17,72,25,224,189,197,12,12,48,151,125,89,151,175,187,159,167,170,
171,252,199,41,219,181,46,189,250,251,157,13,180,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
@@ -10023,10 +10023,10 @@ static const unsigned char temp_3825ab28[] =
253,85,213,43,183,1,0,0,0,128,31,189,110,95,226,209,150,161,42,46,59,0,0,0,0,207,121,117,88,239,219,122,161,234,248,107,174,184,204,0,0,0,0,156,235,248,247,73,165,125,137,87,215,254,171,130,199,72,245,166,125,249,203,222,1,88,193,47,46,1,0,0,48,161,151,
183,235,230,176,254,235,153,255,236,127,31,214,223,135,245,231,97,253,225,210,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,244,239,255,5,24,0,2,125,7,137,153,101,243,194,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* triangle_wave_png = (const char*) temp_3825ab28;
+const char* triangle_wave_png = (const char*) temp_binary_data_45;
//================== wifi.png ==================
-static const unsigned char temp_4168e213[] =
+static const unsigned char temp_binary_data_46[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,1,64,0,0,0,247,8,6,0,0,0,108,40,141,211,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,12,225,73,68,65,84,120,218,236,221,139,117,27,199,21,128,225,81,5,102,7,70,7,70,7,130,43,8,58,8,84,65,144,10,12,87,0,167,2,56,21,192,169,128,84,5,164,42,32,93,1,169,10,28,236,209,64,130,104,62,0,98,95,51,247,251,207,185,
135,142,148,248,132,187,51,255,222,59,51,187,55,37,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,109,242,206,37,64,75,92,236,98,250,196,159,79,243,223,157,202,205,46,30,30,253,217,67,254,115,128,0,209,57,123,121,77,114,52,
@@ -10076,10 +10076,10 @@ static const unsigned char temp_4168e213[] =
242,3,16,82,130,228,7,32,164,4,201,15,64,72,9,146,31,128,144,18,36,63,0,33,37,72,126,0,66,74,144,252,0,132,148,32,249,1,8,41,65,242,3,16,82,130,228,7,32,164,4,201,15,64,72,9,146,31,128,144,18,36,63,0,33,37,72,126,0,66,74,144,252,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,64,45,252,95,128,1,0,166,155,18,218,219,72,225,153,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* wifi_png = (const char*) temp_4168e213;
+const char* wifi_png = (const char*) temp_binary_data_46;
//================== SourceDrop.png ==================
-static const unsigned char temp_77043408[] =
+static const unsigned char temp_binary_data_47[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,154,0,0,2,209,8,6,0,0,0,163,255,186,145,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,24,15,73,68,65,84,120,218,236,157,49,118,219,58,155,64,225,252,234,199,59,120,76,55,93,244,78,154,233,66,173,192,206,10,34,55,108,99,175,64,210,10,226,180,106,44,175,32,206,10,68,151,83,228,68,89,65,152,106,202,167,233,166,
203,224,139,32,255,50,4,82,36,69,144,50,113,239,57,140,98,218,164,36,232,234,3,64,2,31,206,212,137,144,36,201,185,126,24,234,45,214,219,95,122,139,244,38,251,190,206,231,243,105,195,207,181,52,207,211,36,35,253,58,211,6,95,163,188,190,101,133,67,178,
@@ -10169,10 +10169,10 @@ static const unsigned char temp_77043408[] =
26,164,75,209,72,34,211,28,63,74,138,38,66,201,96,214,123,31,215,202,78,82,52,153,53,99,58,3,113,133,118,4,84,67,196,90,153,246,239,131,61,5,46,8,209,140,108,43,83,16,183,166,173,177,173,50,183,237,162,119,53,170,131,166,73,95,128,80,217,182,35,165,183,
255,53,143,89,151,98,217,252,191,0,3,0,92,224,0,25,78,103,130,40,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* SourceDrop_png = (const char*) temp_77043408;
+const char* SourceDrop_png = (const char*) temp_binary_data_47;
//================== DefaultDataSource.png ==================
-static const unsigned char temp_1f71843e[] =
+static const unsigned char temp_binary_data_48[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,14,0,0,2,14,8,6,0,0,0,208,187,133,57,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,54,204,73,68,65,84,120,218,236,221,219,113,27,71,211,198,241,33,234,187,55,51,240,58,2,193,55,46,251,74,171,8,76,69,32,40,2,137,17,144,140,64,100,4,130,34,16,20,129,86,87,118,249,198,80,4,239,58,3,58,131,15,35,244,90,16,5,146,
56,236,244,116,207,252,127,85,44,218,239,129,0,22,187,179,207,246,156,78,2,0,247,254,248,243,175,118,227,95,167,171,159,211,141,127,255,65,254,179,109,78,31,248,239,182,185,93,253,44,31,248,239,63,221,249,247,165,252,127,190,252,127,127,251,245,151,37,
@@ -10371,10 +10371,10 @@ static const unsigned char temp_1f71843e[] =
124,222,248,247,158,65,139,0,193,1,192,126,193,98,168,90,68,177,106,209,200,63,55,193,126,229,98,168,20,12,255,252,175,252,243,80,45,88,50,72,17,32,56,0,200,27,52,54,181,59,252,95,159,110,249,207,134,39,255,135,220,74,24,248,166,114,64,133,0,40,207,255,
11,48,0,82,9,189,51,228,54,205,183,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* DefaultDataSource_png = (const char*) temp_1f71843e;
+const char* DefaultDataSource_png = (const char*) temp_binary_data_48;
//================== FileReaderIcon.png ==================
-static const unsigned char temp_745ce456[] =
+static const unsigned char temp_binary_data_49[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,43,0,0,2,165,8,6,0,0,0,10,20,172,128,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,13,207,73,68,65,84,120,218,236,221,193,109,219,102,24,199,97,167,224,189,217,160,26,33,39,130,60,69,222,32,27,68,217,160,157,64,244,6,217,32,242,4,237,6,97,78,36,120,202,8,234,6,206,4,233,171,194,45,138,130,110,42,231,179,244,
138,126,30,224,3,115,50,132,191,232,234,87,17,65,94,12,227,244,245,234,219,250,171,60,62,37,122,45,159,227,220,101,121,45,109,83,223,93,1,192,194,188,248,159,177,2,23,27,113,113,190,216,69,220,2,98,5,96,9,17,183,143,243,123,162,215,178,207,242,90,34,
@@ -10420,10 +10420,10 @@ static const unsigned char temp_745ce456[] =
127,254,79,195,56,173,205,12,0,100,141,149,205,253,1,0,120,20,143,129,0,0,177,2,0,32,86,0,0,177,2,0,32,86,0,0,196,10,0,32,86,0,0,196,10,0,32,86,0,0,196,10,0,128,88,1,0,196,10,0,128,88,1,0,196,10,0,128,88,1,0,16,43,0,128,88,1,0,16,43,0,128,88,1,0,16,43,
0,0,98,5,0,16,43,0,0,167,240,135,0,3,0,22,72,102,252,69,115,49,232,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* FileReaderIcon_png = (const char*) temp_745ce456;
+const char* FileReaderIcon_png = (const char*) temp_binary_data_49;
//================== IntanIcon.png ==================
-static const unsigned char temp_18972d[] =
+static const unsigned char temp_binary_data_50[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,88,0,0,2,88,8,6,0,0,0,190,102,152,220,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,63,109,73,68,65,84,120,218,236,221,219,117,219,198,162,6,96,56,43,239,155,187,130,208,21,88,126,201,74,158,76,87,96,185,2,83,21,88,170,64,82,5,146,43,16,93,129,229,10,68,63,37,43,47,86,42,48,83,193,81,42,216,7,99,13,19,154,
230,5,131,27,1,242,251,214,194,102,182,197,203,112,0,2,63,102,6,131,39,89,71,252,246,251,31,71,249,67,88,134,249,242,44,95,6,241,79,71,11,255,13,0,240,144,47,247,11,255,253,103,190,204,194,191,253,250,203,207,247,93,40,224,147,29,7,170,227,124,121,145,
@@ -10654,10 +10654,10 @@ static const unsigned char temp_18972d[] =
105,213,2,0,154,55,203,151,219,124,121,95,245,202,192,206,6,172,21,97,107,148,47,175,178,199,150,45,115,105,1,0,85,133,57,172,66,144,250,152,47,211,54,67,85,39,2,214,154,192,53,140,97,235,167,236,223,22,174,97,166,181,11,0,248,215,44,46,243,255,254,43,
134,170,217,174,2,213,178,255,23,96,0,208,173,232,3,246,227,153,225,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* IntanIcon_png = (const char*) temp_18972d;
+const char* IntanIcon_png = (const char*) temp_binary_data_50;
//================== muteoff.png ==================
-static const unsigned char temp_bf129135[] =
+static const unsigned char temp_binary_data_51[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,165,0,0,0,119,8,6,0,0,0,98,221,128,254,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,7,127,73,68,65,84,120,218,236,93,237,141,219,56,16,157,13,238,255,169,131,232,42,136,58,136,174,130,115,42,136,182,3,167,130,213,85,160,77,5,74,7,218,171,64,238,64,78,5,187,169,192,123,21,236,217,128,140,91,24,182,197,33,
135,228,144,126,15,32,2,36,182,98,146,79,111,190,248,65,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16,23,119,24,2,49,52,251,246,215,190,21,251,182,221,183,239,251,246,130,97,1,98,224,64,194,105,223,222,78,218,110,223,86,24,30,64,11,33,223,183,10,195,4,132,194,106,
@@ -10688,10 +10688,10 @@ static const unsigned char temp_bf129135[] =
182,24,66,64,147,106,154,30,135,13,0,193,84,19,102,16,80,165,154,3,134,10,8,141,134,174,87,64,96,182,129,104,196,220,157,81,72,16,210,2,119,24,2,81,172,102,34,110,136,127,239,56,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,153,224,63,1,6,0,199,74,112,
188,78,34,32,245,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* muteoff_png = (const char*) temp_bf129135;
+const char* muteoff_png = (const char*) temp_binary_data_51;
//================== muteon.png ==================
-static const unsigned char temp_a3695c2f[] =
+static const unsigned char temp_binary_data_52[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,0,165,0,0,0,119,8,6,0,0,0,98,221,128,254,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,5,175,73,68,65,84,120,218,236,157,225,113,219,54,20,128,41,95,7,144,39,40,51,65,153,9,66,79,80,101,130,72,19,84,158,32,242,4,106,38,176,55,80,58,129,212,9,228,78,32,101,2,187,19,176,192,9,185,178,172,34,63,146,32,240,32,
126,223,29,207,254,33,203,226,227,167,247,0,16,0,179,12,0,0,0,0,0,0,0,0,0,32,46,19,66,224,135,170,170,230,230,199,175,230,152,154,227,217,28,95,38,147,201,145,200,64,12,25,167,230,216,87,255,231,197,28,51,34,4,90,132,172,83,16,41,8,37,228,204,101,195,
@@ -10716,10 +10716,10 @@ static const unsigned char temp_a3695c2f[] =
38,65,91,214,228,14,14,168,202,154,60,228,30,130,203,121,233,105,25,123,202,54,196,20,179,57,87,115,131,144,221,96,31,27,191,114,218,182,163,21,113,215,246,185,227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,112,61,252,35,192,0,171,7,136,102,133,179,227,147,0,0,0,
0,73,69,78,68,174,66,96,130,0,0 };
-const char* muteon_png = (const char*) temp_a3695c2f;
+const char* muteon_png = (const char*) temp_binary_data_52;
//================== MergerA-01.png ==================
-static const unsigned char temp_7677e5e[] =
+static const unsigned char temp_binary_data_53[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,69,0,0,1,169,8,6,0,0,0,131,16,66,165,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,21,118,73,68,65,84,120,218,236,221,189,111,93,71,122,7,224,33,205,133,100,55,75,195,69,108,96,131,28,117,74,82,136,238,210,36,190,238,220,45,221,109,170,92,117,73,181,218,46,157,168,191,64,18,130,0,219,241,170,76,37,186,220,
138,87,221,22,73,72,45,16,239,166,226,81,103,87,146,58,17,145,172,204,240,156,107,82,50,181,226,199,189,119,230,156,243,60,192,64,194,98,23,246,190,188,31,63,190,243,158,153,16,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
@@ -10797,10 +10797,10 @@ static const unsigned char temp_7677e5e[] =
248,195,31,30,43,12,66,17,148,105,26,154,109,180,127,89,116,32,18,138,24,98,32,26,159,252,207,126,241,139,191,60,90,127,252,246,219,240,242,229,255,41,18,66,17,148,97,18,215,111,98,24,186,179,204,71,246,189,163,25,108,32,154,249,139,79,63,13,127,253,
55,127,27,254,251,191,254,83,48,66,40,130,124,82,39,232,183,113,253,99,12,67,15,114,28,238,248,255,2,12,0,160,41,104,168,212,59,220,159,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* MergerA01_png = (const char*) temp_7677e5e;
+const char* MergerA01_png = (const char*) temp_binary_data_53;
//================== MergerA-02.png ==================
-static const unsigned char temp_77595df[] =
+static const unsigned char temp_binary_data_54[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,69,0,0,1,169,8,6,0,0,0,131,16,66,165,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,21,221,73,68,65,84,120,218,236,221,207,143,220,229,125,192,241,199,6,20,145,3,24,113,104,14,84,76,14,68,42,145,98,71,109,165,68,106,203,112,171,0,41,246,49,39,236,219,70,171,85,234,191,0,175,170,168,205,41,187,26,141,58,55,
102,149,246,18,21,177,72,148,156,130,191,62,1,39,198,28,210,10,34,49,78,140,212,139,221,129,74,56,17,152,246,251,236,124,7,111,28,227,95,187,51,207,243,253,62,175,151,52,26,43,34,96,127,118,215,251,222,231,121,190,223,239,145,0,29,55,24,142,94,174,223,
@@ -10880,10 +10880,10 @@ static const unsigned char temp_77595df[] =
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,7,243,255,2,12,0,244,180,87,201,128,90,137,162,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* MergerA02_png = (const char*) temp_77595df;
+const char* MergerA02_png = (const char*) temp_binary_data_54;
//================== MergerB-01.png ==================
-static const unsigned char temp_6f48ab3d[] =
+static const unsigned char temp_binary_data_55[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,69,0,0,1,169,8,6,0,0,0,131,16,66,165,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,22,71,73,68,65,84,120,218,236,221,193,110,92,215,125,192,225,35,195,64,150,97,158,160,147,39,16,253,4,30,111,219,2,161,159,32,163,29,1,130,144,252,4,146,94,160,148,58,24,100,18,47,56,68,187,106,211,74,6,28,103,149,112,180,106,
187,210,72,221,217,5,60,130,232,165,108,102,99,67,128,1,245,156,185,119,68,202,162,109,82,26,206,57,247,222,239,67,47,168,4,110,98,255,69,101,126,60,231,220,123,67,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
@@ -10964,10 +10964,10 @@ static const unsigned char temp_6f48ab3d[] =
90,156,33,18,68,136,34,40,194,36,100,60,119,36,138,232,108,24,185,195,12,81,4,197,154,214,113,52,21,69,112,201,254,254,31,254,241,240,179,63,125,218,55,9,68,17,20,109,30,214,248,42,17,81,68,23,221,138,215,77,99,64,20,65,99,164,67,217,31,94,246,182,218,
187,230,76,199,92,248,185,69,0,100,51,13,107,124,50,182,40,66,16,1,80,154,73,200,240,14,53,81,132,32,2,160,4,199,117,12,221,205,117,247,217,255,11,48,0,4,145,141,135,126,85,212,174,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* MergerB01_png = (const char*) temp_6f48ab3d;
+const char* MergerB01_png = (const char*) temp_binary_data_55;
//================== MergerB-02.png ==================
-static const unsigned char temp_6f56c2be[] =
+static const unsigned char temp_binary_data_56[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,69,0,0,1,169,8,6,0,0,0,131,16,66,165,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,97,
100,121,113,201,101,60,0,0,18,109,73,68,65,84,120,218,236,221,253,109,28,199,25,192,225,161,97,88,127,90,174,192,231,10,76,87,224,77,5,145,42,48,85,129,237,10,44,86,16,177,2,31,43,200,165,2,175,42,200,169,2,173,42,200,249,207,0,1,156,27,237,94,72,43,
148,248,117,119,243,238,204,243,0,7,25,65,128,216,175,201,240,199,249,216,253,60,65,253,126,221,126,206,140,129,154,125,254,228,137,33,48,87,203,237,231,242,63,255,254,119,95,252,251,200,191,11,4,17,0,71,182,153,98,232,98,27,67,67,152,95,46,252,123,65,
@@ -11034,10 +11034,10 @@ static const unsigned char temp_6f56c2be[] =
0,0,68,17,0,128,40,2,0,16,69,0,0,162,8,0,64,20,1,0,136,34,0,0,81,4,0,32,138,0,0,68,17,0,128,40,2,0,16,69,0,0,162,8,0,64,20,1,0,136,34,0,0,81,4,0,32,138,0,0,68,17,0,128,40,2,0,16,69,0,0,162,8,0,64,20,1,0,136,34,0,0,81,4,0,32,138,0,0,68,17,0,128,40,2,0,
16,69,0,0,162,8,0,64,20,1,0,136,34,0,0,81,4,0,32,138,0,0,68,17,0,128,40,2,0,16,69,0,0,181,248,175,0,3,0,94,88,236,111,126,120,246,51,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* MergerB02_png = (const char*) temp_6f56c2be;
+const char* MergerB02_png = (const char*) temp_binary_data_56;
//================== PipelineA-01.png ==================
-static const unsigned char temp_a2c576c6[] =
+static const unsigned char temp_binary_data_57[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,49,0,0,1,169,8,6,0,0,0,124,178,103,71,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,20,161,73,68,65,84,120,218,236,221,77,118,220,198,213,6,224,82,236,121,232,89,102,129,87,96,122,5,106,175,192,202,10,212,90,129,153,21,136,90,1,165,21,176,51,250,134,162,71,223,80,240,10,68,205,50,19,178,2,209,179,204,148,
174,3,180,217,110,145,84,55,8,116,85,1,207,115,78,29,57,63,199,150,47,33,246,203,91,183,80,33,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,64,22,190,81,2,128,193,124,92,175,39,235,245,239,245,250,175,114,0,0,165,248,220,173,79,235,
@@ -11112,10 +11112,10 @@ static const unsigned char temp_a2c576c6[] =
0,132,24,40,73,28,224,125,17,12,242,2,8,49,80,88,128,137,91,72,6,121,1,132,24,40,138,147,72,0,66,12,20,25,96,174,148,1,64,136,129,210,2,204,74,25,0,132,24,40,201,107,1,6,96,222,188,39,134,18,197,240,242,66,25,0,230,77,39,6,1,6,0,33,6,4,24,0,132,24,16,
96,0,16,98,16,96,0,152,154,111,149,128,204,57,70,13,192,157,116,98,16,96,0,40,210,255,4,24,0,27,12,93,110,21,245,184,159,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* PipelineA01_png = (const char*) temp_a2c576c6;
+const char* PipelineA01_png = (const char*) temp_binary_data_57;
//================== PipelineA-02.png ==================
-static const unsigned char temp_a2d38e47[] =
+static const unsigned char temp_binary_data_58[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,49,0,0,1,169,8,6,0,0,0,124,178,103,71,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,25,18,73,68,65,84,120,218,236,221,191,114,28,199,157,192,241,214,149,67,178,12,101,167,75,52,10,200,84,36,93,133,2,18,97,121,14,233,42,83,145,228,72,96,157,157,185,78,160,99,203,36,66,251,2,146,137,47,228,224,94,64,240,19,
104,20,1,133,132,208,19,104,239,9,4,63,1,111,154,59,123,128,36,252,217,157,253,51,221,51,159,79,213,214,74,182,69,139,63,146,139,47,122,122,166,67,8,225,173,151,87,74,175,91,183,111,191,125,93,254,207,15,71,199,39,247,2,0,92,225,189,230,11,7,36,225,206,
@@ -11207,10 +11207,10 @@ static const unsigned char temp_a2d38e47[] =
25,5,136,24,128,212,157,133,243,243,140,198,198,1,34,6,32,117,49,88,28,9,0,34,6,32,27,85,152,172,186,28,26,5,136,24,128,28,148,77,188,156,26,5,136,24,128,212,77,143,4,40,237,119,1,17,3,144,131,24,44,251,110,145,6,17,3,144,139,170,137,151,202,40,64,196,
0,228,160,12,142,4,0,17,3,144,137,24,44,142,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,210,240,127,2,12,0,195,72,32,13,219,83,201,41,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* PipelineA02_png = (const char*) temp_a2d38e47;
+const char* PipelineA02_png = (const char*) temp_binary_data_58;
//================== PipelineB-01.png ==================
-static const unsigned char temp_aa6a3a5[] =
+static const unsigned char temp_binary_data_59[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,49,0,0,1,169,8,6,0,0,0,124,178,103,71,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,23,202,73,68,65,84,120,218,236,221,191,111,164,199,125,192,225,177,99,56,141,4,159,75,167,241,186,184,107,69,157,1,130,108,196,85,107,5,208,165,58,5,72,34,30,98,215,186,75,109,231,142,165,227,66,199,198,46,245,242,47,16,
13,196,85,18,248,149,155,93,108,99,10,112,106,189,174,148,146,130,221,43,239,104,223,21,87,247,131,183,187,220,221,153,217,247,121,128,5,37,69,145,229,239,209,224,231,102,230,125,39,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,200,
@@ -11297,10 +11297,10 @@ static const unsigned char temp_aa6a3a5[] =
175,127,249,203,162,231,100,4,12,0,223,240,55,237,231,137,49,144,218,31,254,240,73,248,235,95,255,18,14,14,14,5,12,0,34,134,178,252,239,159,254,20,254,239,243,207,195,221,31,223,13,223,253,238,223,206,254,114,124,140,250,196,116,0,120,145,47,125,124,
114,250,220,190,115,231,203,255,250,239,255,249,114,52,158,28,251,159,39,0,47,243,255,2,12,0,38,140,193,224,172,166,247,238,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* PipelineB01_png = (const char*) temp_aa6a3a5;
+const char* PipelineB01_png = (const char*) temp_binary_data_59;
//================== PipelineB-02.png ==================
-static const unsigned char temp_ab4bb26[] =
+static const unsigned char temp_binary_data_60[] =
{ 137,80,78,71,13,10,26,10,0,0,0,13,73,72,68,82,0,0,2,49,0,0,1,169,8,6,0,0,0,124,178,103,71,0,0,0,9,112,72,89,115,0,0,46,35,0,0,46,35,1,120,165,63,118,0,0,0,25,116,69,88,116,83,111,102,116,119,97,114,101,0,65,100,111,98,101,32,73,109,97,103,101,82,101,
97,100,121,113,201,101,60,0,0,20,155,73,68,65,84,120,218,236,221,189,122,28,71,118,6,224,162,54,217,141,4,101,155,169,121,5,132,50,103,28,101,206,22,190,130,29,101,206,12,103,206,22,186,2,72,87,192,209,21,16,190,2,54,51,103,4,51,109,132,118,182,142,72,
101,206,184,93,238,30,99,22,4,64,204,95,119,157,238,247,125,158,122,160,213,15,151,60,232,25,124,83,117,170,234,89,74,233,83,130,242,124,108,199,247,237,184,86,10,0,238,243,76,136,161,240,32,243,67,59,174,148,2,0,33,134,136,114,144,89,41,3,0,66,12,130,
@@ -11375,107 +11375,7 @@ static const unsigned char temp_ab4bb26[] =
228,45,210,23,73,191,11,0,16,36,196,184,18,0,0,8,21,98,242,146,209,66,105,1,128,8,33,38,247,187,92,38,253,46,0,64,144,16,227,74,0,0,32,84,136,201,253,46,103,202,7,0,68,9,49,185,223,229,84,217,0,128,8,33,102,125,37,64,165,92,0,64,132,16,179,238,119,1,
0,8,17,98,114,191,203,66,105,0,128,40,33,198,149,0,0,64,24,174,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,202,241,119,1,6,0,159,157,76,71,98,187,78,10,0,0,0,0,73,69,78,68,174,66,96,130,0,0 };
-const char* PipelineB02_png = (const char*) temp_ab4bb26;
-
-//================== FPGAOutputEditor.cpp ==================
-static const unsigned char temp_86d96cc9[] =
-"/*\r\n"
-" ------------------------------------------------------------------\r\n"
-"\r\n"
-" This file is part of the Open Ephys GUI\r\n"
-" Copyright (C) 2013 Open Ephys\r\n"
-"\r\n"
-" ------------------------------------------------------------------\r\n"
-"\r\n"
-" This program is free software: you can redistribute it and/or modify\r\n"
-" it under the terms of the GNU General Public License as published by\r\n"
-" the Free Software Foundation, either version 3 of the License, or\r\n"
-" (at your option) any later version.\r\n"
-"\r\n"
-" This program is distributed in the hope that it will be useful,\r\n"
-" but WITHOUT ANY WARRANTY; without even the implied warranty of\r\n"
-" MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r\n"
-" GNU General Public License for more details.\r\n"
-"\r\n"
-" You should have received a copy of the GNU General Public License\r\n"
-" along with this program. If not, see <http://www.gnu.org/licenses/>.\r\n"
-"\r\n"
-"*/\r\n"
-"\r\n"
-"\r\n"
-"#include \"FPGAOutputEditor.h\"\r\n"
-"#include <stdio.h>\r\n"
-"\r\n"
-"\r\n"
-"FPGAOutputEditor::FPGAOutputEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors=true)\r\n"
-" : GenericEditor(parentNode, useDefaultParameterEditors)\r\n"
-"\r\n"
-"{\r\n"
-"\r\n"
-" accumulator = 0;\r\n"
-"\r\n"
-" desiredWidth = 180;\r\n"
-"\r\n"
-" // Image im;\r\n"
-" // im = ImageCache::getFromMemory (BinaryData::OpenEphysBoardLogoBlack_png,\r\n"
-" // \t\t\t\t\t\t\t\tBinaryData::OpenEphysBoardLogoBlack_pngSize);\r\n"
-"\r\n"
-" // icon = new ImageIcon(im);\r\n"
-" // addAndMakeVisible(icon);\r\n"
-" // icon->setBounds(15,15,120,120);\r\n"
-"\r\n"
-" // icon->setOpacity(0.3f);\r\n"
-"\r\n"
-"}\r\n"
-"\r\n"
-"FPGAOutputEditor::~FPGAOutputEditor()\r\n"
-"{\r\n"
-" deleteAllChildren();\r\n"
-"}\r\n"
-"\r\n"
-"void FPGAOutputEditor::receivedEvent()\r\n"
-"{\r\n"
-"\r\n"
-" //icon->setOpacity(0.8f);\r\n"
-" //startTimer(50);\r\n"
-"\r\n"
-"}\r\n"
-"\r\n"
-"void FPGAOutputEditor::timerCallback()\r\n"
-"{\r\n"
-"\r\n"
-" repaint();\r\n"
-"\r\n"
-" accumulator++;\r\n"
-"\r\n"
-" if (isFading)\r\n"
-" {\r\n"
-"\r\n"
-" if (accumulator > 15.0)\r\n"
-" {\r\n"
-" stopTimer();\r\n"
-" isFading = false;\r\n"
-" }\r\n"
-"\r\n"
-" }\r\n"
-" else\r\n"
-" {\r\n"
-"\r\n"
-" if (accumulator < 10.0)\r\n"
-" {\r\n"
-" icon->setOpacity(0.8f-(0.05*float(accumulator)));\r\n"
-" accumulator++;\r\n"
-" }\r\n"
-" else\r\n"
-" {\r\n"
-" icon->setOpacity(0.3f);\r\n"
-" stopTimer();\r\n"
-" accumulator = 0;\r\n"
-" }\r\n"
-" }\r\n"
-"}";
-
-const char* FPGAOutputEditor_cpp = (const char*) temp_86d96cc9;
+const char* PipelineB02_png = (const char*) temp_binary_data_60;
const char* getNamedResource (const char*, int&) throw();
@@ -11549,7 +11449,6 @@ const char* getNamedResource (const char* resourceNameUTF8, int& numBytes) throw
case 0x921654eb: numBytes = 6533; return PipelineA02_png;
case 0xc6ee78ab: numBytes = 6205; return PipelineB01_png;
case 0xc6fc902c: numBytes = 5390; return PipelineB02_png;
- case 0x10173ef6: numBytes = 2213; return FPGAOutputEditor_cpp;
default: break;
}
@@ -11557,4 +11456,69 @@ const char* getNamedResource (const char* resourceNameUTF8, int& numBytes) throw
return 0;
}
+const char* namedResourceList[] =
+{
+ "cpmonoblackserialized",
+ "cpmonoboldserialized",
+ "cpmonoextralightserialized",
+ "cpmonolightserialized",
+ "cpmonoplainserialized",
+ "BebasNeue_otf",
+ "cpmono_bold_otf",
+ "cpmono_extra_light_otf",
+ "cpmono_light_otf",
+ "cpmono_plain_otf",
+ "misobold_ttf",
+ "misolight_ttf",
+ "misoregular_ttf",
+ "misoserialized",
+ "nordic_ttf",
+ "ostrich_ttf",
+ "silkscreenserialized",
+ "silkscreen_ttf",
+ "ArduinoIcon_png",
+ "OpenEphysBoardLogoBlack_png",
+ "OpenEphysBoardLogoGray_png",
+ "RadioButtons01_png",
+ "RadioButtons02_png",
+ "RadioButtons03_png",
+ "RadioButtons04_png",
+ "RadioButtons05_png",
+ "RadioButtons_neutral01_png",
+ "RadioButtons_neutral02_png",
+ "RadioButtons_neutral03_png",
+ "RadioButtons_neutral04_png",
+ "RadioButtons_neutral05_png",
+ "RadioButtons_selected01_png",
+ "RadioButtons_selected02_png",
+ "RadioButtons_selected03_png",
+ "RadioButtons_selected04_png",
+ "RadioButtons_selected05_png",
+ "RadioButtons_selected_over01_png",
+ "RadioButtons_selected_over02_png",
+ "RadioButtons_selected_over03_png",
+ "RadioButtons_selected_over04_png",
+ "RadioButtons_selected_over05_png",
+ "noise_wave_png",
+ "saw_wave_png",
+ "sine_wave_png",
+ "square_wave_png",
+ "triangle_wave_png",
+ "wifi_png",
+ "SourceDrop_png",
+ "DefaultDataSource_png",
+ "FileReaderIcon_png",
+ "IntanIcon_png",
+ "muteoff_png",
+ "muteon_png",
+ "MergerA01_png",
+ "MergerA02_png",
+ "MergerB01_png",
+ "MergerB02_png",
+ "PipelineA01_png",
+ "PipelineA02_png",
+ "PipelineB01_png",
+ "PipelineB02_png"
+};
+
}
diff --git a/JuceLibraryCode/BinaryData.h b/JuceLibraryCode/BinaryData.h
index b6c82ef55a1f7e065b1adbaf8a6daabcee92673a..287561eccbf5ff6f884f85a7dfe9f7fa63dc1ce7 100644
--- a/JuceLibraryCode/BinaryData.h
+++ b/JuceLibraryCode/BinaryData.h
@@ -4,6 +4,9 @@
*/
+#ifndef BINARYDATA_H_21121582_INCLUDED
+#define BINARYDATA_H_21121582_INCLUDED
+
namespace BinaryData
{
extern const char* cpmonoblackserialized;
@@ -189,10 +192,15 @@ namespace BinaryData
extern const char* PipelineB02_png;
const int PipelineB02_pngSize = 5390;
- extern const char* FPGAOutputEditor_cpp;
- const int FPGAOutputEditor_cppSize = 2213;
+ // Points to the start of a list of resource names.
+ extern const char* namedResourceList[];
+
+ // Number of elements in the namedResourceList array.
+ const int namedResourceListSize = 61;
// If you provide the name of one of the binary resource variables above, this function will
// return the corresponding data and its size (or a null pointer if the name isn't found).
const char* getNamedResource (const char* resourceNameUTF8, int& dataSizeInBytes) throw();
}
+
+#endif
diff --git a/JuceLibraryCode/JuceHeader.h b/JuceLibraryCode/JuceHeader.h
index d485ec655040dde16c984a9d2e4653b0de7a962b..617c29dff5a689fb338598cf7b3ede9ba3fce126 100644
--- a/JuceLibraryCode/JuceHeader.h
+++ b/JuceLibraryCode/JuceHeader.h
@@ -39,8 +39,8 @@
namespace ProjectInfo
{
const char* const projectName = "open-ephys";
- const char* const versionString = "0.3.1";
- const int versionNumber = 0x301;
+ const char* const versionString = "0.3.2";
+ const int versionNumber = 0x302;
}
#endif // __APPHEADERFILE_YNSYIRR__
diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioDataConverters.cpp b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioDataConverters.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioDataConverters.h b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioDataConverters.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioSampleBuffer.cpp b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioSampleBuffer.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioSampleBuffer.h b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_AudioSampleBuffer.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_FloatVectorOperations.cpp b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_FloatVectorOperations.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_FloatVectorOperations.h b/JuceLibraryCode/modules/juce_audio_basics/buffers/juce_FloatVectorOperations.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_Decibels.h b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_Decibels.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_IIRFilter.cpp b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_IIRFilter.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_IIRFilter.h b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_IIRFilter.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_LagrangeInterpolator.cpp b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_LagrangeInterpolator.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_LagrangeInterpolator.h b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_LagrangeInterpolator.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/effects/juce_Reverb.h b/JuceLibraryCode/modules/juce_audio_basics/effects/juce_Reverb.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/juce_audio_basics.cpp b/JuceLibraryCode/modules/juce_audio_basics/juce_audio_basics.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/juce_audio_basics.h b/JuceLibraryCode/modules/juce_audio_basics/juce_audio_basics.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/juce_module_info b/JuceLibraryCode/modules/juce_audio_basics/juce_module_info
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiBuffer.cpp b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiBuffer.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiBuffer.h b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiBuffer.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiFile.cpp b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiFile.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiFile.h b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiFile.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiKeyboardState.cpp b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiKeyboardState.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiKeyboardState.h b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiKeyboardState.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessage.cpp b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessage.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessage.h b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessage.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessageSequence.cpp b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessageSequence.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessageSequence.h b/JuceLibraryCode/modules/juce_audio_basics/midi/juce_MidiMessageSequence.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_AudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_AudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_BufferingAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_BufferingAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_BufferingAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_BufferingAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ChannelRemappingAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ChannelRemappingAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ChannelRemappingAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ChannelRemappingAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_IIRFilterAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_IIRFilterAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_IIRFilterAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_IIRFilterAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_MixerAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_MixerAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_MixerAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_MixerAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_PositionableAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_PositionableAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ResamplingAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ResamplingAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ResamplingAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ResamplingAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ReverbAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ReverbAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ReverbAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ReverbAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ToneGeneratorAudioSource.cpp b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ToneGeneratorAudioSource.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ToneGeneratorAudioSource.h b/JuceLibraryCode/modules/juce_audio_basics/sources/juce_ToneGeneratorAudioSource.h
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/synthesisers/juce_Synthesiser.cpp b/JuceLibraryCode/modules/juce_audio_basics/synthesisers/juce_Synthesiser.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_basics/synthesisers/juce_Synthesiser.h b/JuceLibraryCode/modules/juce_audio_basics/synthesisers/juce_Synthesiser.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDBurner.h b/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDBurner.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDReader.cpp b/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDReader.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDReader.h b/JuceLibraryCode/modules/juce_audio_devices/audio_cd/juce_AudioCDReader.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioDeviceManager.cpp b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioDeviceManager.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioDeviceManager.h b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioDeviceManager.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODevice.cpp b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODevice.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODevice.h b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODevice.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODeviceType.cpp b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODeviceType.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODeviceType.h b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_AudioIODeviceType.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_SystemAudioVolume.h b/JuceLibraryCode/modules/juce_audio_devices/audio_io/juce_SystemAudioVolume.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.cpp b/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.h b/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.mm b/JuceLibraryCode/modules/juce_audio_devices/juce_audio_devices.mm
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/juce_module_info b/JuceLibraryCode/modules/juce_audio_devices/juce_module_info
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiInput.h b/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiInput.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiMessageCollector.cpp b/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiMessageCollector.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiMessageCollector.h b/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiMessageCollector.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiOutput.cpp b/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiOutput.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiOutput.h b/JuceLibraryCode/modules/juce_audio_devices/midi_io/juce_MidiOutput.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/native/juce_MidiDataConcatenator.h b/JuceLibraryCode/modules/juce_audio_devices/native/juce_MidiDataConcatenator.h
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_Audio.cpp b/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_Audio.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_Midi.cpp b/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_Midi.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_OpenSL.cpp b/JuceLibraryCode/modules/juce_audio_devices/native/juce_android_OpenSL.cpp
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diff --git a/JuceLibraryCode/modules/juce_audio_devices/native/juce_ios_Audio.cpp b/JuceLibraryCode/modules/juce_audio_devices/native/juce_ios_Audio.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLFrameBuffer.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLFrameBuffer.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLGraphicsContext.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLGraphicsContext.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLGraphicsContext.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLGraphicsContext.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLHelpers.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLHelpers.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLHelpers.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLHelpers.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLImage.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLImage.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLImage.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLImage.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLPixelFormat.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLPixelFormat.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLPixelFormat.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLPixelFormat.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLRenderer.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLRenderer.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLShaderProgram.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLShaderProgram.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLShaderProgram.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLShaderProgram.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLTexture.cpp b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLTexture.cpp
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLTexture.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_OpenGLTexture.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_Quaternion.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_Quaternion.h
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diff --git a/JuceLibraryCode/modules/juce_opengl/opengl/juce_Vector3D.h b/JuceLibraryCode/modules/juce_opengl/opengl/juce_Vector3D.h
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diff --git a/JuceLibraryCode/modules/juce_video/capture/juce_CameraDevice.h b/JuceLibraryCode/modules/juce_video/capture/juce_CameraDevice.h
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diff --git a/JuceLibraryCode/modules/juce_video/juce_module_info b/JuceLibraryCode/modules/juce_video/juce_module_info
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diff --git a/JuceLibraryCode/modules/juce_video/juce_video.cpp b/JuceLibraryCode/modules/juce_video/juce_video.cpp
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diff --git a/JuceLibraryCode/modules/juce_video/juce_video.h b/JuceLibraryCode/modules/juce_video/juce_video.h
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diff --git a/JuceLibraryCode/modules/juce_video/juce_video.mm b/JuceLibraryCode/modules/juce_video/juce_video.mm
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_android_CameraDevice.cpp b/JuceLibraryCode/modules/juce_video/native/juce_android_CameraDevice.cpp
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_mac_CameraDevice.mm b/JuceLibraryCode/modules/juce_video/native/juce_mac_CameraDevice.mm
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_mac_QuickTimeMovieComponent.mm b/JuceLibraryCode/modules/juce_video/native/juce_mac_QuickTimeMovieComponent.mm
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_win32_CameraDevice.cpp b/JuceLibraryCode/modules/juce_video/native/juce_win32_CameraDevice.cpp
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_win32_DirectShowComponent.cpp b/JuceLibraryCode/modules/juce_video/native/juce_win32_DirectShowComponent.cpp
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diff --git a/JuceLibraryCode/modules/juce_video/native/juce_win32_QuickTimeMovieComponent.cpp b/JuceLibraryCode/modules/juce_video/native/juce_win32_QuickTimeMovieComponent.cpp
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diff --git a/JuceLibraryCode/modules/juce_video/playback/juce_DirectShowComponent.h b/JuceLibraryCode/modules/juce_video/playback/juce_DirectShowComponent.h
old mode 100644
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diff --git a/JuceLibraryCode/modules/juce_video/playback/juce_QuickTimeMovieComponent.h b/JuceLibraryCode/modules/juce_video/playback/juce_QuickTimeMovieComponent.h
old mode 100644
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diff --git a/Licenses/HDF5.txt b/Licenses/HDF5.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e4537f2d10c3c9e7558d304254c7be8f62d21504
--- /dev/null
+++ b/Licenses/HDF5.txt
@@ -0,0 +1,89 @@
+Copyright Notice and License Terms for
+HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+-----------------------------------------------------------------------------
+
+HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+Copyright 2006-2014 by The HDF Group.
+
+NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
+Copyright 1998-2006 by the Board of Trustees of the University of Illinois.
+
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted for any purpose (including commercial purposes)
+provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice,
+ this list of conditions, and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions, and the following disclaimer in the documentation
+ and/or materials provided with the distribution.
+
+3. In addition, redistributions of modified forms of the source or binary
+ code must carry prominent notices stating that the original code was
+ changed and the date of the change.
+
+4. All publications or advertising materials mentioning features or use of
+ this software are asked, but not required, to acknowledge that it was
+ developed by The HDF Group and by the National Center for Supercomputing
+ Applications at the University of Illinois at Urbana-Champaign and
+ credit the contributors.
+
+5. Neither the name of The HDF Group, the name of the University, nor the
+ name of any Contributor may be used to endorse or promote products derived
+ from this software without specific prior written permission from
+ The HDF Group, the University, or the Contributor, respectively.
+
+DISCLAIMER:
+THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS
+"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. In no
+event shall The HDF Group or the Contributors be liable for any damages
+suffered by the users arising out of the use of this software, even if
+advised of the possibility of such damage.
+
+-----------------------------------------------------------------------------
+-----------------------------------------------------------------------------
+
+Contributors: National Center for Supercomputing Applications (NCSA) at
+the University of Illinois, Fortner Software, Unidata Program Center (netCDF),
+The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip),
+and Digital Equipment Corporation (DEC).
+
+-----------------------------------------------------------------------------
+
+Portions of HDF5 were developed with support from the Lawrence Berkeley
+National Laboratory (LBNL) and the United States Department of Energy
+under Prime Contract No. DE-AC02-05CH11231.
+
+-----------------------------------------------------------------------------
+
+Portions of HDF5 were developed with support from the University of
+California, Lawrence Livermore National Laboratory (UC LLNL).
+The following statement applies to those portions of the product and must
+be retained in any redistribution of source code, binaries, documentation,
+and/or accompanying materials:
+
+ This work was partially produced at the University of California,
+ Lawrence Livermore National Laboratory (UC LLNL) under contract
+ no. W-7405-ENG-48 (Contract 48) between the U.S. Department of Energy
+ (DOE) and The Regents of the University of California (University)
+ for the operation of UC LLNL.
+
+ DISCLAIMER:
+ This work was prepared as an account of work sponsored by an agency of
+ the United States Government. Neither the United States Government nor
+ the University of California nor any of their employees, makes any
+ warranty, express or implied, or assumes any liability or responsibility
+ for the accuracy, completeness, or usefulness of any information,
+ apparatus, product, or process disclosed, or represents that its use
+ would not infringe privately- owned rights. Reference herein to any
+ specific commercial products, process, or service by trade name,
+ trademark, manufacturer, or otherwise, does not necessarily constitute
+ or imply its endorsement, recommendation, or favoring by the United
+ States Government or the University of California. The views and
+ opinions of authors expressed herein do not necessarily state or reflect
+ those of the United States Government or the University of California,
+ and shall not be used for advertising or product endorsement purposes.
+-----------------------------------------------------------------------------
\ No newline at end of file
diff --git a/license.txt b/Licenses/Open-Ephys-GPL-3.txt
similarity index 100%
rename from license.txt
rename to Licenses/Open-Ephys-GPL-3.txt
diff --git a/Licenses/SZIP.txt b/Licenses/SZIP.txt
new file mode 100644
index 0000000000000000000000000000000000000000..faa09517649d256b4dd29364b6c9a9fe52b5cc4e
--- /dev/null
+++ b/Licenses/SZIP.txt
@@ -0,0 +1,39 @@
+The SZIP Science Data Lossless Compression Program is Copyright (C) 2001 Science
+& Technology Corporation @ UNM. All rights released. Copyright (C) 2003 Lowell
+H. Miles and Jack A. Venbrux. Licensed to ICs, LLC, for distribution by the
+University of Illinois' National Center for Supercomputing Applications as a
+part of the HDF data storage and retrieval file format and software library
+products package. All rights reserved. Do not modify or use for other
+purposes.
+
+SZIP implements an extended Rice adaptive lossless compression algorithm
+for sample data. The primary algorithm was developed by R. F. Rice at
+Jet Propulsion Laboratory.
+
+SZIP embodies certain inventions patented by the National Aeronautics &
+Space Administration. United States Patent Nos. 5,448,642, 5,687,255,
+and 5,822,457 have been licensed to ICs, LLC, for distribution with the
+HDF data storage and retrieval file format and software library products.
+All rights reserved.
+
+Revocable, royalty-free, nonexclusive sublicense to use SZIP decompression
+software routines and underlying patents is hereby granted by ICs, LLC, to
+all users of and in conjunction with HDF data storage and retrieval file
+format and software library products.
+
+Revocable, royalty-free, nonexclusive sublicense to use SZIP compression
+software routines and underlying patents for non-commercial, scientific use
+only is hereby granted by ICs, LLC, to users of and in conjunction with HDF
+data storage and retrieval file format and software library products.
+
+For commercial use license to SZIP compression software routines and underlying
+patents please contact ICs, LLC, at:
+
+ Joseph J. Feeley, Ph.D., P.E.
+ Chief Executive Officer
+ ICs, LLC
+ PO Box 2236
+ McCall, ID 83638
+
+ Phone: (208) 315-0029
+ Email: Joe.Feeley@frontiernet.net
\ No newline at end of file
diff --git a/README.rst b/README.rst
index 49d893fd9fcec2dffa8dd1e526f9caac3cc570ca..8996eee90593b553b27d65be2e1cb7d70390bff9 100644
--- a/README.rst
+++ b/README.rst
@@ -10,8 +10,8 @@ This repository contains all of the files you'll need to compile and run the GUI
We recommend reading through the wiki_ before attempting to make any changes.
-If you want to add files, you'll have to do that through the "Introjucer," using the "open-ephys.jucer" file. The Introjucer makefiles are located in the JuceLibraryCode/Introjucer/Builds folder, or as part of the Juce library package on SourceForge_.
+If you want to add files, you'll have to do that through the "Introjucer," using the "open-ephys.jucer" file. The Introjucer makefiles are located in the JuceLibraryCode/Introjucer/Builds folder, or as part of the Juce source_.
-.. _SourceForge: http://sourceforge.net/projects/juce/files/juce/
+.. _source: https://github.com/julianstorer/juce
.. _JUCE: http://www.rawmaterialsoftware.com/juce.php
.. _wiki: http://open-ephys.atlassian.net
diff --git a/Resources/DLLs/InstallEcubeApi_0_11.exe b/Resources/DLLs/InstallEcubeApi_0_11.exe
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diff --git a/Resources/DLLs/Win64/zlib.dll b/Resources/DLLs/Win64/zlib.dll
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index 0000000000000000000000000000000000000000..b92846f10c9b5a0215105582fcc3dc61c0d2905c
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diff --git a/Resources/DLLs/libokFrontPanel_centOS_x86_64.so b/Resources/DLLs/libokFrontPanel_centOS_x86_64.so
new file mode 100755
index 0000000000000000000000000000000000000000..f8c6386c193b5822adc9a585a0445c1e5efa2c95
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diff --git a/Resources/DLLs/szip.dll b/Resources/DLLs/szip.dll
new file mode 100644
index 0000000000000000000000000000000000000000..ba836b4e734761dbba81321dd9a8405b6c28984d
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diff --git a/Resources/DLLs/zlib.dll b/Resources/DLLs/zlib.dll
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index 0000000000000000000000000000000000000000..68efaa4ba4bdc7564d5f824030d1d1e3fc9bb8e3
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diff --git a/Resources/windows-libs/HDF5/include/H5ACpkg.h b/Resources/windows-libs/HDF5/include/H5ACpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..3060a70dc8079f20806cde7071f0c194170489ae
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5ACpkg.h
@@ -0,0 +1,392 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: John Mainzer -- 4/19/06
+ *
+ * Purpose: This file contains declarations which are normally visible
+ * only within the H5AC package (just H5AC.c at present).
+ *
+ * Source files outside the H5AC package should include
+ * H5ACprivate.h instead.
+ *
+ * The one exception to this rule is testpar/t_cache.c. The
+ * test code is easier to write if it can look at H5AC_aux_t.
+ * Indeed, this is the main reason why this file was created.
+ *
+ */
+
+#ifndef H5AC_PACKAGE
+#error "Do not include this file outside the H5AC package!"
+#endif
+
+#ifndef _H5ACpkg_H
+#define _H5ACpkg_H
+
+/* Get package's private header */
+#include "H5ACprivate.h" /* Metadata cache */
+
+
+/* Get needed headers */
+#include "H5Cprivate.h" /* Cache */
+#include "H5SLprivate.h" /* Skip lists */
+
+
+#define H5AC_DEBUG_DIRTY_BYTES_CREATION 0
+
+#ifdef H5_HAVE_PARALLEL
+
+/* the following #defined are used to specify the operation required
+ * at a sync point.
+ */
+
+#define H5AC_SYNC_POINT_OP__FLUSH_TO_MIN_CLEAN 0
+#define H5AC_SYNC_POINT_OP__FLUSH_CACHE 1
+
+#endif /* H5_HAVE_PARALLEL */
+
+/*-------------------------------------------------------------------------
+ * It is a bit difficult to set ranges of allowable values on the
+ * dirty_bytes_threshold field of H5AC_aux_t. The following are
+ * probably broader than they should be.
+ *-------------------------------------------------------------------------
+ */
+
+#define H5AC__MIN_DIRTY_BYTES_THRESHOLD (int32_t) \
+ (H5C__MIN_MAX_CACHE_SIZE / 2)
+#define H5AC__DEFAULT_DIRTY_BYTES_THRESHOLD (256 * 1024)
+#define H5AC__MAX_DIRTY_BYTES_THRESHOLD (int32_t) \
+ (H5C__MAX_MAX_CACHE_SIZE / 4)
+
+#define H5AC__DEFAULT_METADATA_WRITE_STRATEGY \
+ H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED
+
+/****************************************************************************
+ *
+ * structure H5AC_aux_t
+ *
+ * While H5AC has become a wrapper for the cache implemented in H5C.c, there
+ * are some features of the metadata cache that are specific to it, and which
+ * therefore do not belong in the more generic H5C cache code.
+ *
+ * In particular, there is the matter of synchronizing writes from the
+ * metadata cache to disk in the PHDF5 case.
+ *
+ * Prior to this update, the presumption was that all metadata caches would
+ * write the same data at the same time since all operations modifying
+ * metadata must be performed collectively. Given this assumption, it was
+ * safe to allow only the writes from process 0 to actually make it to disk,
+ * while metadata writes from all other processes were discarded.
+ *
+ * Unfortunately, this presumption is in error as operations that read
+ * metadata need not be collective, but can change the location of dirty
+ * entries in the metadata cache LRU lists. This can result in the same
+ * metadata write operation triggering writes from the metadata caches on
+ * some processes, but not all (causing a hang), or in different sets of
+ * entries being written from different caches (potentially resulting in
+ * metadata corruption in the file).
+ *
+ * To deal with this issue, I decided to apply a paradigm shift to the way
+ * metadata is written to disk.
+ *
+ * With this set of changes, only the metadata cache on process 0 is able
+ * to write metadata to disk, although metadata caches on all other
+ * processes can read metadata from disk as before.
+ *
+ * To keep all the other caches from getting plugged up with dirty metadata,
+ * process 0 periodically broadcasts a list of entries that it has flushed
+ * since that last notice, and which are currently clean. The other caches
+ * mark these entries as clean as well, which allows them to evict the
+ * entries as needed.
+ *
+ * One obvious problem in this approach is synchronizing the broadcasts
+ * and receptions, as different caches may see different amounts of
+ * activity.
+ *
+ * The current solution is for the caches to track the number of bytes
+ * of newly generated dirty metadata, and to broadcast and receive
+ * whenever this value exceeds some user specified threshold.
+ *
+ * Maintaining this count is easy for all processes not on process 0 --
+ * all that is necessary is to add the size of the entry to the total
+ * whenever there is an insertion, a move of a previously clean entry,
+ * or whever a previously clean entry is marked dirty in an unprotect.
+ *
+ * On process 0, we have to be careful not to count dirty bytes twice.
+ * If an entry is marked dirty, flushed, and marked dirty again, all
+ * within a single reporting period, it only th first marking should
+ * be added to the dirty bytes generated tally, as that is all that
+ * the other processes will see.
+ *
+ * At present, this structure exists to maintain the fields needed to
+ * implement the above scheme, and thus is only used in the parallel
+ * case. However, other uses may arise in the future.
+ *
+ * Instance of this structure are associated with metadata caches via
+ * the aux_ptr field of H5C_t (see H5Cpkg.h). The H5AC code is
+ * responsible for allocating, maintaining, and discarding instances
+ * of H5AC_aux_t.
+ *
+ * The remainder of this header comments documents the individual fields
+ * of the structure.
+ *
+ * JRM - 6/27/05
+ *
+ * magic: Unsigned 32 bit integer always set to
+ * H5AC__H5AC_AUX_T_MAGIC. This field is used to validate
+ * pointers to instances of H5AC_aux_t.
+ *
+ * mpi_comm: MPI communicator associated with the file for which the
+ * cache has been created.
+ *
+ * mpi_rank: MPI rank of this process within mpi_comm.
+ *
+ * mpi_size: Number of processes in mpi_comm.
+ *
+ * write_permitted: Boolean flag used to control whether the cache
+ * is permitted to write to file.
+ *
+ * dirty_bytes_threshold: Integer field containing the dirty bytes
+ * generation threashold. Whenever dirty byte creation
+ * exceeds this value, the metadata cache on process 0
+ * broadcasts a list of the entries it has flushed since
+ * the last broadcast (or since the beginning of execution)
+ * and which are currently clean (if they are still in the
+ * cache)
+ *
+ * Similarly, metadata caches on processes other than process
+ * 0 will attempt to receive a list of clean entries whenever
+ * the threshold is exceeded.
+ *
+ * dirty_bytes: Integer field containing the number of bytes of dirty
+ * metadata generated since the beginning of the computation,
+ * or (more typically) since the last clean entries list
+ * broadcast. This field is reset to zero after each such
+ * broadcast.
+ *
+ * metadata_write_strategy: Integer code indicating how we will be
+ * writing the metadata. In the first incarnation of
+ * this code, all writes were done from process 0. This
+ * field exists to facilitate experiments with other
+ * strategies.
+ *
+ * dirty_bytes_propagations: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of times the cleaned list
+ * has been propagated from process 0 to the other
+ * processes.
+ *
+ * unprotect_dirty_bytes: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of dirty bytes created
+ * via unprotect operations since the last time the cleaned
+ * list was propagated.
+ *
+ * unprotect_dirty_bytes_updates: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of times dirty bytes have
+ * been created via unprotect operations since the last time
+ * the cleaned list was propagated.
+ *
+ * insert_dirty_bytes: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of dirty bytes created
+ * via insert operations since the last time the cleaned
+ * list was propagated.
+ *
+ * insert_dirty_bytes_updates: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of times dirty bytes have
+ * been created via insert operations since the last time
+ * the cleaned list was propagated.
+ *
+ * move_dirty_bytes: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of dirty bytes created
+ * via move operations since the last time the cleaned
+ * list was propagated.
+ *
+ * move_dirty_bytes_updates: This field only exists when the
+ * H5AC_DEBUG_DIRTY_BYTES_CREATION #define is TRUE.
+ *
+ * It is used to track the number of times dirty bytes have
+ * been created via move operations since the last time
+ * the cleaned list was propagated.
+ *
+ * Things have changed a bit since the following four fields were defined.
+ * If metadata_write_strategy is H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY,
+ * all comments hold as before -- with the caviate that pending further
+ * coding, the process 0 metadata cache is forbidden to flush entries outside
+ * of a sync point.
+ *
+ * However, for different metadata write strategies, these fields are used
+ * only to maintain the correct dirty byte count on process zero -- and in
+ * most if not all cases, this is redundant, as process zero will be barred
+ * from flushing entries outside of a sync point.
+ *
+ * JRM -- 3/16/10
+ *
+ * d_slist_ptr: Pointer to an instance of H5SL_t used to maintain a list
+ * of entries that have been dirtied since the last time they
+ * were listed in a clean entries broadcast. This list is
+ * only maintained by the metadata cache on process 0 -- it
+ * it used to maintain a view of the dirty entries as seen
+ * by the other caches, so as to keep the dirty bytes count
+ * in synchronization with them.
+ *
+ * Thus on process 0, the dirty_bytes count is incremented
+ * only if either
+ *
+ * 1) an entry is inserted in the metadata cache, or
+ *
+ * 2) a previously clean entry is moved, and it does not
+ * already appear in the dirty entry list, or
+ *
+ * 3) a previously clean entry is unprotected with the
+ * dirtied flag set and the entry does not already appear
+ * in the dirty entry list.
+ *
+ * Entries are added to the dirty entry list whever they cause
+ * the dirty bytes count to be increased. They are removed
+ * when they appear in a clean entries broadcast. Note that
+ * moves must be reflected in the dirty entry list.
+ *
+ * To reitterate, this field is only used on process 0 -- it
+ * should be NULL on all other processes.
+ *
+ * d_slist_len: Integer field containing the number of entries in the
+ * dirty entry list. This field should always contain the
+ * value 0 on all processes other than process 0. It exists
+ * primarily for sanity checking.
+ *
+ * c_slist_ptr: Pointer to an instance of H5SL_t used to maintain a list
+ * of entries that were dirty, have been flushed
+ * to disk since the last clean entries broadcast, and are
+ * still clean. Since only process 0 can write to disk, this
+ * list only exists on process 0.
+ *
+ * In essence, this slist is used to assemble the contents of
+ * the next clean entries broadcast. The list emptied after
+ * each broadcast.
+ *
+ * c_slist_len: Integer field containing the number of entries in the clean
+ * entries list (*c_slist_ptr). This field should always
+ * contain the value 0 on all processes other than process 0.
+ * It exists primarily for sanity checking.
+ *
+ * The following two fields are used only when metadata_write_strategy
+ * is H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED.
+ *
+ * candidate_slist_ptr: Pointer to an instance of H5SL_t used by process 0
+ * to construct a list of entries to be flushed at this sync
+ * point. This list is then broadcast to the other processes,
+ * which then either flush or mark clean all entries on it.
+ *
+ * candidate_slist_len: Integer field containing the number of entries on the
+ * candidate list. It exists primarily for sanity checking.
+ *
+ * write_done: In the parallel test bed, it is necessary to ensure that
+ * all writes to the server process from cache 0 complete
+ * before it enters the barrier call with the other caches.
+ *
+ * The write_done callback allows t_cache to do this without
+ * requiring an ACK on each write. Since these ACKs greatly
+ * increase the run time on some platforms, this is a
+ * significant optimization.
+ *
+ * This field must be set to NULL when the callback is not
+ * needed.
+ *
+ * Note: This field has been extended for use by all processes
+ * with the addition of support for the distributed
+ * metadata write strategy.
+ * JRM -- 5/9/10
+ *
+ * sync_point_done: In the parallel test bed, it is necessary to verify
+ * that the expected writes, and only the expected writes,
+ * have taken place at the end of each sync point.
+ *
+ * The sync_point_done callback allows t_cache to perform
+ * this verification. The field is set to NULL when the
+ * callback is not needed.
+ *
+ ****************************************************************************/
+
+#ifdef H5_HAVE_PARALLEL
+
+#define H5AC__H5AC_AUX_T_MAGIC (unsigned)0x00D0A01
+
+typedef struct H5AC_aux_t
+{
+ uint32_t magic;
+
+ MPI_Comm mpi_comm;
+
+ int mpi_rank;
+
+ int mpi_size;
+
+ hbool_t write_permitted;
+
+ int32_t dirty_bytes_threshold;
+
+ int32_t dirty_bytes;
+
+ int32_t metadata_write_strategy;
+
+#if H5AC_DEBUG_DIRTY_BYTES_CREATION
+
+ int32_t dirty_bytes_propagations;
+
+ int32_t unprotect_dirty_bytes;
+ int32_t unprotect_dirty_bytes_updates;
+
+ int32_t insert_dirty_bytes;
+ int32_t insert_dirty_bytes_updates;
+
+ int32_t move_dirty_bytes;
+ int32_t move_dirty_bytes_updates;
+
+#endif /* H5AC_DEBUG_DIRTY_BYTES_CREATION */
+
+ H5SL_t * d_slist_ptr;
+
+ int32_t d_slist_len;
+
+ H5SL_t * c_slist_ptr;
+
+ int32_t c_slist_len;
+
+ H5SL_t * candidate_slist_ptr;
+
+ int32_t candidate_slist_len;
+
+ void (* write_done)(void);
+
+ void (* sync_point_done)(int num_writes,
+ haddr_t * written_entries_tbl);
+
+} H5AC_aux_t; /* struct H5AC_aux_t */
+
+#endif /* H5_HAVE_PARALLEL */
+
+#endif /* _H5ACpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5ACpublic.h b/Resources/windows-libs/HDF5/include/H5ACpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..639179ce3b2bcc253739764d7f5f1b4b648c9024
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5ACpublic.h
@@ -0,0 +1,508 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5ACpublic.h
+ * Jul 10 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public include file for cache functions.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5ACpublic_H
+#define _H5ACpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Cpublic.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/****************************************************************************
+ *
+ * structure H5AC_cache_config_t
+ *
+ * H5AC_cache_config_t is a public structure intended for use in public APIs.
+ * At least in its initial incarnation, it is basicaly a copy of struct
+ * H5C_auto_size_ctl_t, minus the report_fcn field, and plus the
+ * dirty_bytes_threshold field.
+ *
+ * The report_fcn field is omitted, as including it would require us to
+ * make H5C_t structure public.
+ *
+ * The dirty_bytes_threshold field does not appear in H5C_auto_size_ctl_t,
+ * as synchronization between caches on different processes is handled at
+ * the H5AC level, not at the level of H5C. Note however that there is
+ * considerable interaction between this value and the other fields in this
+ * structure.
+ *
+ * Similarly, the open_trace_file, close_trace_file, and trace_file_name
+ * fields do not appear in H5C_auto_size_ctl_t, as most trace file
+ * issues are handled at the H5AC level. The one exception is storage of
+ * the pointer to the trace file, which is handled by H5C.
+ *
+ * The structure is in H5ACpublic.h as we may wish to allow different
+ * configuration options for metadata and raw data caches.
+ *
+ * The fields of the structure are discussed individually below:
+ *
+ * version: Integer field containing the version number of this version
+ * of the H5AC_cache_config_t structure. Any instance of
+ * H5AC_cache_config_t passed to the cache must have a known
+ * version number, or an error will be flagged.
+ *
+ * rpt_fcn_enabled: Boolean field used to enable and disable the default
+ * reporting function. This function is invoked every time the
+ * automatic cache resize code is run, and reports on its activities.
+ *
+ * This is a debugging function, and should normally be turned off.
+ *
+ * open_trace_file: Boolean field indicating whether the trace_file_name
+ * field should be used to open a trace file for the cache.
+ *
+ * The trace file is a debuging feature that allow the capture of
+ * top level metadata cache requests for purposes of debugging and/or
+ * optimization. This field should normally be set to FALSE, as
+ * trace file collection imposes considerable overhead.
+ *
+ * This field should only be set to TRUE when the trace_file_name
+ * contains the full path of the desired trace file, and either
+ * there is no open trace file on the cache, or the close_trace_file
+ * field is also TRUE.
+ *
+ * close_trace_file: Boolean field indicating whether the current trace
+ * file (if any) should be closed.
+ *
+ * See the above comments on the open_trace_file field. This field
+ * should be set to FALSE unless there is an open trace file on the
+ * cache that you wish to close.
+ *
+ * trace_file_name: Full path of the trace file to be opened if the
+ * open_trace_file field is TRUE.
+ *
+ * In the parallel case, an ascii representation of the mpi rank of
+ * the process will be appended to the file name to yield a unique
+ * trace file name for each process.
+ *
+ * The length of the path must not exceed H5AC__MAX_TRACE_FILE_NAME_LEN
+ * characters.
+ *
+ * evictions_enabled: Boolean field used to either report the current
+ * evictions enabled status of the cache, or to set the cache's
+ * evictions enabled status.
+ *
+ * In general, the metadata cache should always be allowed to
+ * evict entries. However, in some cases it is advantageous to
+ * disable evictions briefly, and thereby postpone metadata
+ * writes. However, this must be done with care, as the cache
+ * can grow quickly. If you do this, re-enable evictions as
+ * soon as possible and monitor cache size.
+ *
+ * At present, evictions can only be disabled if automatic
+ * cache resizing is also disabled (that is, ( incr_mode ==
+ * H5C_incr__off ) && ( decr_mode == H5C_decr__off )). There
+ * is no logical reason why this should be so, but it simplifies
+ * implementation and testing, and I can't think of any reason
+ * why it would be desireable. If you can think of one, I'll
+ * revisit the issue.
+ *
+ * set_initial_size: Boolean flag indicating whether the size of the
+ * initial size of the cache is to be set to the value given in
+ * the initial_size field. If set_initial_size is FALSE, the
+ * initial_size field is ignored.
+ *
+ * initial_size: If enabled, this field contain the size the cache is
+ * to be set to upon receipt of this structure. Needless to say,
+ * initial_size must lie in the closed interval [min_size, max_size].
+ *
+ * min_clean_fraction: double in the range 0 to 1 indicating the fraction
+ * of the cache that is to be kept clean. This field is only used
+ * in parallel mode. Typical values are 0.1 to 0.5.
+ *
+ * max_size: Maximum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must
+ * be greater than or equal to min_size.
+ *
+ * min_size: Minimum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size
+ * must be less than or equal to max_size.
+ *
+ * epoch_length: Number of accesses on the cache over which to collect
+ * hit rate stats before running the automatic cache resize code,
+ * if it is enabled.
+ *
+ * At the end of an epoch, we discard prior hit rate data and start
+ * collecting afresh. The epoch_length must lie in the closed
+ * interval [H5C__MIN_AR_EPOCH_LENGTH, H5C__MAX_AR_EPOCH_LENGTH].
+ *
+ *
+ * Cache size increase control fields:
+ *
+ * incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * increased. At present there are two possible values:
+ *
+ * H5C_incr__off: Don't attempt to increase the size of the cache
+ * automatically.
+ *
+ * When this increment mode is selected, the remaining fields
+ * in the cache size increase section ar ignored.
+ *
+ * H5C_incr__threshold: Attempt to increase the size of the cache
+ * whenever the average hit rate over the last epoch drops
+ * below the value supplied in the lower_hr_threshold
+ * field.
+ *
+ * Note that this attempt will fail if the cache is already
+ * at its maximum size, or if the cache is not already using
+ * all available space.
+ *
+ * Note that you must set decr_mode to H5C_incr__off if you
+ * disable metadata cache entry evictions.
+ *
+ * lower_hr_threshold: Lower hit rate threshold. If the increment mode
+ * (incr_mode) is H5C_incr__threshold and the hit rate drops below the
+ * value supplied in this field in an epoch, increment the cache size by
+ * size_increment. Note that cache size may not be incremented above
+ * max_size, and that the increment may be further restricted by the
+ * max_increment field if it is enabled.
+ *
+ * When enabled, this field must contain a value in the range [0.0, 1.0].
+ * Depending on the incr_mode selected, it may also have to be less than
+ * upper_hr_threshold.
+ *
+ * increment: Double containing the multiplier used to derive the new
+ * cache size from the old if a cache size increment is triggered.
+ * The increment must be greater than 1.0, and should not exceed 2.0.
+ *
+ * The new cache size is obtained my multiplying the current max cache
+ * size by the increment, and then clamping to max_size and to stay
+ * within the max_increment as necessary.
+ *
+ * apply_max_increment: Boolean flag indicating whether the max_increment
+ * field should be used to limit the maximum cache size increment.
+ *
+ * max_increment: If enabled by the apply_max_increment field described
+ * above, this field contains the maximum number of bytes by which the
+ * cache size can be increased in a single re-size.
+ *
+ * flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated
+ * type whose value indicates whether and by which algorithm we should
+ * make flash increases in the size of the cache to accomodate insertion
+ * of large entries and large increases in the size of a single entry.
+ *
+ * The addition of the flash increment mode was occasioned by performance
+ * problems that appear when a local heap is increased to a size in excess
+ * of the current cache size. While the existing re-size code dealt with
+ * this eventually, performance was very bad for the remainder of the
+ * epoch.
+ *
+ * At present, there are two possible values for the flash_incr_mode:
+ *
+ * H5C_flash_incr__off: Don't perform flash increases in the size of
+ * the cache.
+ *
+ * H5C_flash_incr__add_space: Let x be either the size of a newly
+ * newly inserted entry, or the number of bytes by which the
+ * size of an existing entry has been increased.
+ *
+ * If
+ * x > flash_threshold * current max cache size,
+ *
+ * increase the current maximum cache size by x * flash_multiple
+ * less any free space in the cache, and star a new epoch. For
+ * now at least, pay no attention to the maximum increment.
+ *
+ * In both of the above cases, the flash increment pays no attention to
+ * the maximum increment (at least in this first incarnation), but DOES
+ * stay within max_size.
+ *
+ * With a little thought, it should be obvious that the above flash
+ * cache size increase algorithm is not sufficient for all circumstances
+ * -- for example, suppose the user round robins through
+ * (1/flash_threshold) +1 groups, adding one data set to each on each
+ * pass. Then all will increase in size at about the same time, requiring
+ * the max cache size to at least double to maintain acceptable
+ * performance, however the above flash increment algorithm will not be
+ * triggered.
+ *
+ * Hopefully, the add space algorithms detailed above will be sufficient
+ * for the performance problems encountered to date. However, we should
+ * expect to revisit the issue.
+ *
+ * flash_multiple: Double containing the multiple described above in the
+ * H5C_flash_incr__add_space section of the discussion of the
+ * flash_incr_mode section. This field is ignored unless flash_incr_mode
+ * is H5C_flash_incr__add_space.
+ *
+ * flash_threshold: Double containing the factor by which current max cache
+ * size is multiplied to obtain the size threshold for the add_space flash
+ * increment algorithm. The field is ignored unless flash_incr_mode is
+ * H5C_flash_incr__add_space.
+ *
+ *
+ * Cache size decrease control fields:
+ *
+ * decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * decreased. At present there are four possibilities.
+ *
+ * H5C_decr__off: Don't attempt to decrease the size of the cache
+ * automatically.
+ *
+ * When this increment mode is selected, the remaining fields
+ * in the cache size decrease section are ignored.
+ *
+ * H5C_decr__threshold: Attempt to decrease the size of the cache
+ * whenever the average hit rate over the last epoch rises
+ * above the value supplied in the upper_hr_threshold
+ * field.
+ *
+ * H5C_decr__age_out: At the end of each epoch, search the cache for
+ * entries that have not been accessed for at least the number
+ * of epochs specified in the epochs_before_eviction field, and
+ * evict these entries. Conceptually, the maximum cache size
+ * is then decreased to match the new actual cache size. However,
+ * this reduction may be modified by the min_size, the
+ * max_decrement, and/or the empty_reserve.
+ *
+ * H5C_decr__age_out_with_threshold: Same as age_out, but we only
+ * attempt to reduce the cache size when the hit rate observed
+ * over the last epoch exceeds the value provided in the
+ * upper_hr_threshold field.
+ *
+ * Note that you must set decr_mode to H5C_decr__off if you
+ * disable metadata cache entry evictions.
+ *
+ * upper_hr_threshold: Upper hit rate threshold. The use of this field
+ * varies according to the current decr_mode:
+ *
+ * H5C_decr__off or H5C_decr__age_out: The value of this field is
+ * ignored.
+ *
+ * H5C_decr__threshold: If the hit rate exceeds this threshold in any
+ * epoch, attempt to decrement the cache size by size_decrement.
+ *
+ * Note that cache size may not be decremented below min_size.
+ *
+ * Note also that if the upper_threshold is 1.0, the cache size
+ * will never be reduced.
+ *
+ * H5C_decr__age_out_with_threshold: If the hit rate exceeds this
+ * threshold in any epoch, attempt to reduce the cache size
+ * by evicting entries that have not been accessed for more
+ * than the specified number of epochs.
+ *
+ * decrement: This field is only used when the decr_mode is
+ * H5C_decr__threshold.
+ *
+ * The field is a double containing the multiplier used to derive the
+ * new cache size from the old if a cache size decrement is triggered.
+ * The decrement must be in the range 0.0 (in which case the cache will
+ * try to contract to its minimum size) to 1.0 (in which case the
+ * cache will never shrink).
+ *
+ * apply_max_decrement: Boolean flag used to determine whether decrements
+ * in cache size are to be limited by the max_decrement field.
+ *
+ * max_decrement: Maximum number of bytes by which the cache size can be
+ * decreased in a single re-size. Note that decrements may also be
+ * restricted by the min_size of the cache, and (in age out modes) by
+ * the empty_reserve field.
+ *
+ * epochs_before_eviction: Integer field used in H5C_decr__age_out and
+ * H5C_decr__age_out_with_threshold decrement modes.
+ *
+ * This field contains the number of epochs an entry must remain
+ * unaccessed before it is evicted in an attempt to reduce the
+ * cache size. If applicable, this field must lie in the range
+ * [1, H5C__MAX_EPOCH_MARKERS].
+ *
+ * apply_empty_reserve: Boolean field controlling whether the empty_reserve
+ * field is to be used in computing the new cache size when the
+ * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
+ *
+ * empty_reserve: To avoid a constant racheting down of cache size by small
+ * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold
+ * modes, this field allows one to require that any cache size
+ * reductions leave the specified fraction of unused space in the cache.
+ *
+ * The value of this field must be in the range [0.0, 1.0]. I would
+ * expect typical values to be in the range of 0.01 to 0.1.
+ *
+ *
+ * Parallel Configuration Fields:
+ *
+ * In PHDF5, all operations that modify metadata must be executed collectively.
+ *
+ * We used to think that this was enough to ensure consistency across the
+ * metadata caches, but since we allow processes to read metadata individually,
+ * the order of dirty entries in the LRU list can vary across processes,
+ * which can result in inconsistencies between the caches.
+ *
+ * PHDF5 uses several strategies to prevent such inconsistencies in metadata,
+ * all of which use the fact that the same stream of dirty metadata is seen
+ * by all processes for purposes of synchronization. This is done by
+ * having each process count the number of bytes of dirty metadata generated,
+ * and then running a "sync point" whenever this count exceeds a user
+ * specified threshold (see dirty_bytes_threshold below).
+ *
+ * The current metadata write strategy is indicated by the
+ * metadata_write_strategy field. The possible values of this field, along
+ * with the associated metadata write strategies are discussed below.
+ *
+ * dirty_bytes_threshold: Threshold of dirty byte creation used to
+ * synchronize updates between caches. (See above for outline and
+ * motivation.)
+ *
+ * This value MUST be consistant across all processes accessing the
+ * file. This field is ignored unless HDF5 has been compiled for
+ * parallel.
+ *
+ * metadata_write_strategy: Integer field containing a code indicating the
+ * desired metadata write strategy. The valid values of this field
+ * are enumerated and discussed below:
+ *
+ *
+ * H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY:
+ *
+ * When metadata_write_strategy is set to this value, only process
+ * zero is allowed to write dirty metadata to disk. All other
+ * processes must retain dirty metadata until they are informed at
+ * a sync point that the dirty metadata in question has been written
+ * to disk.
+ *
+ * When the sync point is reached (or when there is a user generated
+ * flush), process zero flushes sufficient entries to bring it into
+ * complience with its min clean size (or flushes all dirty entries in
+ * the case of a user generated flush), broad casts the list of
+ * entries just cleaned to all the other processes, and then exits
+ * the sync point.
+ *
+ * Upon receipt of the broadcast, the other processes mark the indicated
+ * entries as clean, and leave the sync point as well.
+ *
+ *
+ * H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED:
+ *
+ * In the distributed metadata write strategy, process zero still makes
+ * the decisions as to what entries should be flushed, but the actual
+ * flushes are distributed across the processes in the computation to
+ * the extent possible.
+ *
+ * In this strategy, when a sync point is triggered (either by dirty
+ * metadata creation or manual flush), all processes enter a barrier.
+ *
+ * On the other side of the barrier, process 0 constructs an ordered
+ * list of the entries to be flushed, and then broadcasts this list
+ * to the caches in all the processes.
+ *
+ * All processes then scan the list of entries to be flushed, flushing
+ * some, and marking the rest as clean. The algorithm for this purpose
+ * ensures that each entry in the list is flushed exactly once, and
+ * all are marked clean in each cache.
+ *
+ * Note that in the case of a flush of the cache, no message passing
+ * is necessary, as all processes have the same list of dirty entries,
+ * and all of these entries must be flushed. Thus in this case it is
+ * sufficient for each process to sort its list of dirty entries after
+ * leaving the initial barrier, and use this list as if it had been
+ * received from process zero.
+ *
+ * To avoid possible messages from the past/future, all caches must
+ * wait until all caches are done before leaving the sync point.
+ *
+ ****************************************************************************/
+
+#define H5AC__CURR_CACHE_CONFIG_VERSION 1
+#define H5AC__MAX_TRACE_FILE_NAME_LEN 1024
+
+#define H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY 0
+#define H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED 1
+
+typedef struct H5AC_cache_config_t
+{
+ /* general configuration fields: */
+ int version;
+
+ hbool_t rpt_fcn_enabled;
+
+ hbool_t open_trace_file;
+ hbool_t close_trace_file;
+ char trace_file_name[H5AC__MAX_TRACE_FILE_NAME_LEN + 1];
+
+ hbool_t evictions_enabled;
+
+ hbool_t set_initial_size;
+ size_t initial_size;
+
+ double min_clean_fraction;
+
+ size_t max_size;
+ size_t min_size;
+
+ long int epoch_length;
+
+
+ /* size increase control fields: */
+ enum H5C_cache_incr_mode incr_mode;
+
+ double lower_hr_threshold;
+
+ double increment;
+
+ hbool_t apply_max_increment;
+ size_t max_increment;
+
+ enum H5C_cache_flash_incr_mode flash_incr_mode;
+ double flash_multiple;
+ double flash_threshold;
+
+
+ /* size decrease control fields: */
+ enum H5C_cache_decr_mode decr_mode;
+
+ double upper_hr_threshold;
+
+ double decrement;
+
+ hbool_t apply_max_decrement;
+ size_t max_decrement;
+
+ int epochs_before_eviction;
+
+ hbool_t apply_empty_reserve;
+ double empty_reserve;
+
+
+ /* parallel configuration fields: */
+ int dirty_bytes_threshold;
+ int metadata_write_strategy;
+
+} H5AC_cache_config_t;
+
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5AbstractDs.h b/Resources/windows-libs/HDF5/include/H5AbstractDs.h
new file mode 100644
index 0000000000000000000000000000000000000000..6904d768df53d37d55a159dae6aef4645dda61e9
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5AbstractDs.h
@@ -0,0 +1,93 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __AbstractDs_H
+#define __AbstractDs_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+class ArrayType;
+class CompType;
+class EnumType;
+class FloatType;
+class IntType;
+class StrType;
+class VarLenType;
+
+/*! \class AbstractDs
+ \brief AbstractDs is an abstract base class, inherited by Attribute
+ and DataSet.
+
+ It provides a collection of services that are common to both Attribute
+ and DataSet. AbstractDs inherits from H5Object.
+*/
+class H5_DLLCPP AbstractDs {
+ public:
+ // Gets a copy the datatype of that this abstract dataset uses.
+ // Note that this datatype is a generic one and can only be accessed
+ // via generic member functions, i.e., member functions belong
+ // to DataType. To get specific datatype, i.e. EnumType, FloatType,
+ // etc..., use the specific functions, that follow, instead.
+ DataType getDataType() const;
+
+ // Gets a copy of the specific datatype of this abstract dataset.
+ ArrayType getArrayType() const;
+ CompType getCompType() const;
+ EnumType getEnumType() const;
+ IntType getIntType() const;
+ FloatType getFloatType() const;
+ StrType getStrType() const;
+ VarLenType getVarLenType() const;
+
+ ///\brief Gets the size in memory of this abstract dataset.
+ virtual size_t getInMemDataSize() const = 0;
+
+ ///\brief Gets the dataspace of this abstract dataset - pure virtual.
+ virtual DataSpace getSpace() const = 0;
+
+ // Gets the class of the datatype that is used by this abstract
+ // dataset.
+ H5T_class_t getTypeClass() const;
+
+ ///\brief Returns the amount of storage size required - pure virtual.
+ virtual hsize_t getStorageSize() const = 0;
+
+ // Returns this class name - pure virtual.
+ virtual H5std_string fromClass() const = 0;
+
+ // Copy constructor
+ AbstractDs( const AbstractDs& original );
+
+ // Destructor
+ virtual ~AbstractDs();
+
+ protected:
+ // Default constructor
+ AbstractDs();
+
+ // Constructor that takes an attribute id or a dataset id.
+ AbstractDs( const hid_t ds_id );
+
+ private:
+ // This member function is implemented by DataSet and Attribute - pure virtual.
+ virtual hid_t p_get_type() const = 0;
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __AbstractDs_H
diff --git a/Resources/windows-libs/HDF5/include/H5Alltypes.h b/Resources/windows-libs/HDF5/include/H5Alltypes.h
new file mode 100644
index 0000000000000000000000000000000000000000..b1d792d9bd3fa080045ffbd5a78ad868ddb062dc
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Alltypes.h
@@ -0,0 +1,29 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// This header file simply serves as a container to hold the
+// header files of all datatypes. It simplifies the header
+// file including in the code.
+
+#include "H5DataType.h"
+#include "H5AtomType.h"
+#include "H5EnumType.h"
+#include "H5IntType.h"
+#include "H5FloatType.h"
+#include "H5StrType.h"
+#include "H5CompType.h"
+#include "H5ArrayType.h"
+#include "H5VarLenType.h"
diff --git a/Resources/windows-libs/HDF5/include/H5Apkg.h b/Resources/windows-libs/HDF5/include/H5Apkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..fa26a9a3d4efff3884b3e3fe72fdf81edf481f99
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Apkg.h
@@ -0,0 +1,272 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol
+ * Monday, Apr 20
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5A package. Source files outside the H5A package should
+ * include H5Aprivate.h instead.
+ */
+#ifndef H5A_PACKAGE
+#error "Do not include this file outside the H5A package!"
+#endif
+
+#ifndef _H5Apkg_H
+#define _H5Apkg_H
+
+/*
+ * Define this to enable debugging.
+ */
+#ifdef NDEBUG
+# undef H5A_DEBUG
+#endif
+
+/* Get package's private header */
+#include "H5Aprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5B2private.h" /* v2 B-trees */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5HFprivate.h" /* Fractal heaps */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5Sprivate.h" /* Dataspace */
+#include "H5Tprivate.h" /* Datatype functions */
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* This is the initial version, which does not have support for shared datatypes */
+#define H5O_ATTR_VERSION_1 1
+
+/* This version allows support for shared datatypes & dataspaces by adding a
+ * 'flag' byte indicating when those components are shared. This version
+ * also dropped the alignment on all the components.
+ */
+#define H5O_ATTR_VERSION_2 2
+
+/* Add support for different character encodings of attribute names */
+#define H5O_ATTR_VERSION_3 3
+
+/* The latest version of the format. Look through the 'encode', 'decode'
+ * and 'size' message callbacks for places to change when updating this.
+ */
+#define H5O_ATTR_VERSION_LATEST H5O_ATTR_VERSION_3
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+/* Define the shared attribute structure */
+typedef struct H5A_shared_t {
+ uint8_t version; /* Version to encode attribute with */
+
+ char *name; /* Attribute's name */
+ H5T_cset_t encoding; /* Character encoding of attribute name */
+
+ H5T_t *dt; /* Attribute's datatype */
+ size_t dt_size; /* Size of datatype on disk */
+
+ H5S_t *ds; /* Attribute's dataspace */
+ size_t ds_size; /* Size of dataspace on disk */
+
+ void *data; /* Attribute data (on a temporary basis) */
+ size_t data_size; /* Size of data on disk */
+ H5O_msg_crt_idx_t crt_idx; /* Attribute's creation index in the object header */
+ unsigned nrefs; /* Ref count for times this object is refered */
+} H5A_shared_t;
+
+/* Define the main attribute structure */
+struct H5A_t {
+ H5O_shared_t sh_loc; /* Shared message info (must be first) */
+ H5O_loc_t oloc; /* Object location for object attribute is on */
+ hbool_t obj_opened; /* Object header entry opened? */
+ H5G_name_t path; /* Group hierarchy path */
+ H5A_shared_t *shared; /* Shared attribute information */
+};
+
+/* Typedefs for "dense" attribute storage */
+/* (fractal heap & v2 B-tree info) */
+
+/* Typedef for native 'name' field index records in the v2 B-tree */
+/* (Keep 'id' field first so generic record handling in callbacks works) */
+typedef struct H5A_dense_bt2_name_rec_t {
+ H5O_fheap_id_t id; /* Heap ID for attribute */
+ uint8_t flags; /* Object header message flags for attribute */
+ H5O_msg_crt_idx_t corder; /* 'creation order' field value */
+ uint32_t hash; /* Hash of 'name' field value */
+} H5A_dense_bt2_name_rec_t;
+
+/* Typedef for native 'creation order' field index records in the v2 B-tree */
+/* (Keep 'id' field first so generic record handling in callbacks works) */
+typedef struct H5A_dense_bt2_corder_rec_t {
+ H5O_fheap_id_t id; /* Heap ID for attribute */
+ uint8_t flags; /* Object header message flags for attribute */
+ H5O_msg_crt_idx_t corder; /* 'creation order' field value */
+} H5A_dense_bt2_corder_rec_t;
+
+/* Define the 'found' callback function pointer for matching an attribute record in a v2 B-tree */
+typedef herr_t (*H5A_bt2_found_t)(const H5A_t *attr, hbool_t *took_ownership, void *op_data);
+
+/*
+ * Common data exchange structure for dense attribute storage. This structure
+ * is passed through the v2 B-tree layer to the methods for the objects
+ * to which the v2 B-tree points.
+ */
+typedef struct H5A_bt2_ud_common_t {
+ /* downward */
+ H5F_t *f; /* Pointer to file that fractal heap is in */
+ hid_t dxpl_id; /* DXPL for operation */
+ H5HF_t *fheap; /* Fractal heap handle */
+ H5HF_t *shared_fheap; /* Fractal heap handle for shared messages */
+ const char *name; /* Name of attribute to compare */
+ uint32_t name_hash; /* Hash of name of attribute to compare */
+ uint8_t flags; /* Flags for attribute storage location */
+ H5O_msg_crt_idx_t corder; /* Creation order value of attribute to compare */
+ H5A_bt2_found_t found_op; /* Callback when correct attribute is found */
+ void *found_op_data; /* Callback data when correct attribute is found */
+} H5A_bt2_ud_common_t;
+
+/*
+ * Data exchange structure for dense attribute storage. This structure is
+ * passed through the v2 B-tree layer when inserting attributes.
+ */
+typedef struct H5A_bt2_ud_ins_t {
+ /* downward */
+ H5A_bt2_ud_common_t common; /* Common info for B-tree user data (must be first) */
+ H5O_fheap_id_t id; /* Heap ID of attribute to insert */
+} H5A_bt2_ud_ins_t;
+
+/* Data structure to hold table of attributes for an object */
+typedef struct {
+ size_t nattrs; /* # of attributes in table */
+ H5A_t **attrs; /* Pointer to array of attribute pointers */
+} H5A_attr_table_t;
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* Declare extern the free list for H5A_t's */
+H5FL_EXTERN(H5A_t);
+
+/* Declare the external free lists for H5A_shared_t's */
+H5FL_EXTERN(H5A_shared_t);
+
+/* Declare extern a free list to manage blocks of type conversion data */
+H5FL_BLK_EXTERN(attr_buf);
+
+/* The v2 B-tree class for indexing 'name' field on attributes */
+H5_DLLVAR const H5B2_class_t H5A_BT2_NAME[1];
+
+/* The v2 B-tree class for indexing 'creation order' field on attributes */
+H5_DLLVAR const H5B2_class_t H5A_BT2_CORDER[1];
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Function prototypes for H5A package scope */
+H5_DLL herr_t H5A_init(void);
+H5_DLL herr_t H5A__term_deprec_interface(void);
+H5_DLL hid_t H5A_create(const H5G_loc_t *loc, const char *name,
+ const H5T_t *type, const H5S_t *space, hid_t acpl_id, hid_t dxpl_id);
+H5_DLL H5A_t * H5A_open_by_name(const H5G_loc_t *loc, const char *obj_name,
+ const char *attr_name, hid_t lapl_id, hid_t dxpl_id);
+H5_DLL H5A_t *H5A_open_by_idx(const H5G_loc_t *loc, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id, hid_t dxpl_id);
+H5_DLL ssize_t H5A_get_name(H5A_t *attr, size_t buf_size, char *buf);
+H5_DLL H5A_t *H5A_copy(H5A_t *new_attr, const H5A_t *old_attr);
+H5_DLL herr_t H5A_get_info(const H5A_t *attr, H5A_info_t *ainfo);
+H5_DLL herr_t H5A_free(H5A_t *attr);
+H5_DLL herr_t H5A_close(H5A_t *attr);
+H5_DLL htri_t H5A_get_ainfo(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_ainfo_t *ainfo);
+H5_DLL herr_t H5A_set_version(const H5F_t *f, H5A_t *attr);
+
+/* Attribute "dense" storage routines */
+H5_DLL herr_t H5A_dense_create(H5F_t *f, hid_t dxpl_id, H5O_ainfo_t *ainfo);
+H5_DLL H5A_t *H5A_dense_open(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ const char *name);
+H5_DLL herr_t H5A_dense_insert(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ H5A_t *attr);
+H5_DLL herr_t H5A_dense_write(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ H5A_t *attr);
+H5_DLL herr_t H5A_dense_rename(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ const char *old_name, const char *new_name);
+H5_DLL herr_t H5A_dense_iterate(H5F_t *f, hid_t dxpl_id, hid_t loc_id,
+ const H5O_ainfo_t *ainfo, H5_index_t idx_type, H5_iter_order_t order,
+ hsize_t skip, hsize_t *last_attr, const H5A_attr_iter_op_t *attr_op,
+ void *op_data);
+H5_DLL herr_t H5A_dense_remove(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ const char *name);
+H5_DLL herr_t H5A_dense_remove_by_idx(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n);
+H5_DLL htri_t H5A_dense_exists(H5F_t *f, hid_t dxpl_id, const H5O_ainfo_t *ainfo,
+ const char *name);
+H5_DLL herr_t H5A_dense_delete(H5F_t *f, hid_t dxpl_id, H5O_ainfo_t *ainfo);
+
+
+/* Attribute table operations */
+H5_DLL herr_t H5A_compact_build_table(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5_index_t idx_type, H5_iter_order_t order, H5A_attr_table_t *atable);
+H5_DLL herr_t H5A_dense_build_table(H5F_t *f, hid_t dxpl_id,
+ const H5O_ainfo_t *ainfo, H5_index_t idx_type, H5_iter_order_t order,
+ H5A_attr_table_t *atable);
+H5_DLL herr_t H5A_attr_iterate_table(const H5A_attr_table_t *atable,
+ hsize_t skip, hsize_t *last_attr, hid_t loc_id,
+ const H5A_attr_iter_op_t *attr_op, void *op_data);
+H5_DLL herr_t H5A_attr_release_table(H5A_attr_table_t *atable);
+
+/* Attribute operations */
+H5_DLL herr_t H5O_attr_create(const H5O_loc_t *loc, hid_t dxpl_id, H5A_t *attr);
+H5_DLL H5A_t *H5O_attr_open_by_name(const H5O_loc_t *loc, const char *name,
+ hid_t dxpl_id);
+H5_DLL H5A_t *H5O_attr_open_by_idx(const H5O_loc_t *loc, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t n, hid_t dxpl_id);
+H5_DLL herr_t H5O_attr_update_shared(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5A_t *attr, H5O_shared_t *sh_mesg);
+H5_DLL herr_t H5O_attr_write(const H5O_loc_t *loc, hid_t dxpl_id,
+ H5A_t *attr);
+H5_DLL herr_t H5O_attr_rename(const H5O_loc_t *loc, hid_t dxpl_id,
+ const char *old_name, const char *new_name);
+H5_DLL herr_t H5O_attr_remove(const H5O_loc_t *loc, const char *name,
+ hid_t dxpl_id);
+H5_DLL herr_t H5O_attr_remove_by_idx(const H5O_loc_t *loc, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t n, hid_t dxpl_id);
+H5_DLL htri_t H5O_attr_exists(const H5O_loc_t *loc, const char *name, hid_t dxpl_id);
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+H5_DLL int H5O_attr_count(const H5O_loc_t *loc, hid_t dxpl_id);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+H5_DLL H5A_t *H5A_attr_copy_file(const H5A_t *attr_src, H5F_t *file_dst, hbool_t *recompute_size,
+ H5O_copy_t *cpy_info, hid_t dxpl_id);
+H5_DLL herr_t H5A_attr_post_copy_file(const H5O_loc_t *src_oloc, const H5A_t *mesg_src,
+ H5O_loc_t *dst_oloc, const H5A_t *mesg_dst, hid_t dxpl_id, H5O_copy_t *cpy_info);
+H5_DLL herr_t H5A_dense_post_copy_file_all(const H5O_loc_t *src_oloc, const H5O_ainfo_t * ainfo_src,
+ H5O_loc_t *dst_oloc, H5O_ainfo_t *ainfo_dst, hid_t dxpl_id, H5O_copy_t *cpy_info);
+
+
+/* Testing functions */
+#ifdef H5A_TESTING
+H5_DLL htri_t H5A_is_shared_test(hid_t aid);
+H5_DLL herr_t H5A_get_shared_rc_test(hid_t attr_id, hsize_t *ref_count);
+#endif /* H5A_TESTING */
+
+#endif /* _H5Apkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Apublic.h b/Resources/windows-libs/HDF5/include/H5Apublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..99ca90e114a779e464ad138f57e5b045baf30a13
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Apublic.h
@@ -0,0 +1,120 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5A module.
+ */
+#ifndef _H5Apublic_H
+#define _H5Apublic_H
+
+/* Public headers needed by this file */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Opublic.h" /* Object Headers */
+#include "H5Tpublic.h" /* Datatypes */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Information struct for attribute (for H5Aget_info/H5Aget_info_by_idx) */
+typedef struct {
+ hbool_t corder_valid; /* Indicate if creation order is valid */
+ H5O_msg_crt_idx_t corder; /* Creation order */
+ H5T_cset_t cset; /* Character set of attribute name */
+ hsize_t data_size; /* Size of raw data */
+} H5A_info_t;
+
+/* Typedef for H5Aiterate2() callbacks */
+typedef herr_t (*H5A_operator2_t)(hid_t location_id/*in*/,
+ const char *attr_name/*in*/, const H5A_info_t *ainfo/*in*/, void *op_data/*in,out*/);
+
+/* Public function prototypes */
+H5_DLL hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id,
+ hid_t space_id, hid_t acpl_id, hid_t aapl_id);
+H5_DLL hid_t H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name,
+ hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id);
+H5_DLL hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id);
+H5_DLL hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, hid_t aapl_id, hid_t lapl_id);
+H5_DLL hid_t H5Aopen_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id,
+ hid_t lapl_id);
+H5_DLL herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf);
+H5_DLL herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf);
+H5_DLL herr_t H5Aclose(hid_t attr_id);
+H5_DLL hid_t H5Aget_space(hid_t attr_id);
+H5_DLL hid_t H5Aget_type(hid_t attr_id);
+H5_DLL hid_t H5Aget_create_plist(hid_t attr_id);
+H5_DLL ssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf);
+H5_DLL ssize_t H5Aget_name_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ char *name /*out*/, size_t size, hid_t lapl_id);
+H5_DLL hsize_t H5Aget_storage_size(hid_t attr_id);
+H5_DLL herr_t H5Aget_info(hid_t attr_id, H5A_info_t *ainfo /*out*/);
+H5_DLL herr_t H5Aget_info_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, H5A_info_t *ainfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Aget_info_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ H5A_info_t *ainfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Arename(hid_t loc_id, const char *old_name, const char *new_name);
+H5_DLL herr_t H5Arename_by_name(hid_t loc_id, const char *obj_name,
+ const char *old_attr_name, const char *new_attr_name, hid_t lapl_id);
+H5_DLL herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data);
+H5_DLL herr_t H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data,
+ hid_t lapd_id);
+H5_DLL herr_t H5Adelete(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Adelete_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, hid_t lapl_id);
+H5_DLL herr_t H5Adelete_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL htri_t H5Aexists(hid_t obj_id, const char *attr_name);
+H5_DLL htri_t H5Aexists_by_name(hid_t obj_id, const char *obj_name,
+ const char *attr_name, hid_t lapl_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+/* Typedef for H5Aiterate1() callbacks */
+typedef herr_t (*H5A_operator1_t)(hid_t location_id/*in*/,
+ const char *attr_name/*in*/, void *operator_data/*in,out*/);
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t acpl_id);
+H5_DLL hid_t H5Aopen_name(hid_t loc_id, const char *name);
+H5_DLL hid_t H5Aopen_idx(hid_t loc_id, unsigned idx);
+H5_DLL int H5Aget_num_attrs(hid_t loc_id);
+H5_DLL herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op,
+ void *op_data);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5Apublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5ArrayType.h b/Resources/windows-libs/HDF5/include/H5ArrayType.h
new file mode 100644
index 0000000000000000000000000000000000000000..511126ee4a49a0cd696bc8f06a801f7b5b3329c9
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5ArrayType.h
@@ -0,0 +1,63 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5ArrayType_H
+#define __H5ArrayType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class ArrayType
+ \brief Class ArrayType inherits from DataType and provides wrappers for
+ the HDF5's Array Datatypes.
+*/
+class H5_DLLCPP ArrayType : public DataType {
+ public:
+ // Constructor that creates a new array data type based on the
+ // specified base type.
+ ArrayType(const DataType& base_type, int ndims, const hsize_t* dims);
+
+ // Returns the number of dimensions of this array datatype.
+ int getArrayNDims();
+
+ // Returns the sizes of dimensions of this array datatype.
+ int getArrayDims(hsize_t* dims);
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("ArrayType"); }
+
+ // Copy constructor: makes copy of the original object.
+ ArrayType( const ArrayType& original );
+
+ // Constructor that takes an existing id
+ ArrayType( const hid_t existing_id );
+
+ // Noop destructor
+ virtual ~ArrayType();
+
+ protected:
+ // Default constructor
+ ArrayType();
+
+ private:
+ int rank; // Rank of the array
+ hsize_t* dimensions; // Sizes of the array dimensions
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5ArrayType_H
diff --git a/Resources/windows-libs/HDF5/include/H5AtomType.h b/Resources/windows-libs/HDF5/include/H5AtomType.h
new file mode 100644
index 0000000000000000000000000000000000000000..792312ac8edcb5b55b0711cde25a92b3b5cfc701
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5AtomType.h
@@ -0,0 +1,85 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5AtomType_H
+#define __H5AtomType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class AtomType
+ \brief AtomType is a base class, inherited by IntType, FloatType,
+ StrType, and PredType.
+
+ AtomType provides operations on HDF5 atomic datatypes. It also inherits
+ from DataType.
+*/
+class H5_DLLCPP AtomType : public DataType {
+ public:
+ // Returns the byte order of an atomic datatype.
+ H5T_order_t getOrder() const;
+ H5T_order_t getOrder( H5std_string& order_string ) const;
+
+ // Sets the byte ordering of an atomic datatype.
+ void setOrder( H5T_order_t order ) const;
+
+ // Retrieves the bit offset of the first significant bit.
+ // 12/05/00 - changed return type to int from size_t - C API
+ int getOffset() const;
+
+ // Sets the bit offset of the first significant bit.
+ void setOffset( size_t offset ) const;
+
+ // Retrieves the padding type of the least and most-significant bit padding.
+ void getPad( H5T_pad_t& lsb, H5T_pad_t& msb ) const;
+
+ // Sets the least and most-significant bits padding types
+ void setPad( H5T_pad_t lsb, H5T_pad_t msb ) const;
+
+ // Returns the precision of an atomic datatype.
+ size_t getPrecision() const;
+
+ // Sets the precision of an atomic datatype.
+ void setPrecision( size_t precision ) const;
+
+ // Sets the total size for an atomic datatype.
+ void setSize( size_t size ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("AtomType"); }
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Copy constructor - makes copy of the original object
+ AtomType( const AtomType& original );
+
+ // Noop destructor
+ virtual ~AtomType();
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Default constructor
+ AtomType();
+
+ // Constructor that takes an existing id
+ AtomType( const hid_t existing_id );
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5AtomType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Attribute.h b/Resources/windows-libs/HDF5/include/H5Attribute.h
new file mode 100644
index 0000000000000000000000000000000000000000..33c4db319646fe54fb8be61c1e3f1252dc4506f8
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Attribute.h
@@ -0,0 +1,114 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Attribute_H
+#define __H5Attribute_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class Attribute
+ \brief Class Attribute operates on HDF5 attributes.
+
+ An attribute has many characteristics similar to a dataset, thus both
+ Attribute and DataSet are derivatives of AbstractDs. Attribute also
+ inherits from IdComponent because an attribute is an HDF5 component that
+ is identified by an identifier.
+*/
+class H5_DLLCPP Attribute : public AbstractDs, public IdComponent {
+ public:
+ // Closes this attribute.
+ virtual void close();
+
+ // Gets the name of the file, in which this attribute belongs.
+ H5std_string getFileName() const;
+
+ // Gets the name of this attribute.
+ ssize_t getName(char* attr_name, size_t buf_size = 0) const;
+ H5std_string getName(size_t len) const;
+ H5std_string getName() const;
+ ssize_t getName(H5std_string& attr_name, size_t len = 0) const;
+ // The overloaded function below is replaced by the one above and it
+ // is kept for backward compatibility purpose.
+ ssize_t getName( size_t buf_size, H5std_string& attr_name ) const;
+
+ // Gets a copy of the dataspace for this attribute.
+ virtual DataSpace getSpace() const;
+
+ // Returns the amount of storage size required for this attribute.
+ virtual hsize_t getStorageSize() const;
+
+ // Returns the in memory size of this attribute's data.
+ virtual size_t getInMemDataSize() const;
+
+ // Reads data from this attribute.
+ void read( const DataType& mem_type, void *buf ) const;
+ void read( const DataType& mem_type, H5std_string& strg ) const;
+
+ // Writes data to this attribute.
+ void write(const DataType& mem_type, const void *buf ) const;
+ void write(const DataType& mem_type, const H5std_string& strg ) const;
+
+ // Flushes all buffers associated with the file specified by this
+ // attribute to disk.
+ void flush( H5F_scope_t scope ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("Attribute"); }
+
+ // Creates a copy of an existing attribute using the attribute id
+ Attribute( const hid_t attr_id );
+
+ // Copy constructor: makes a copy of an existing Attribute object.
+ Attribute( const Attribute& original );
+
+ // Default constructor
+ Attribute();
+
+ // Gets the attribute id.
+ virtual hid_t getId() const;
+
+ // Destructor: properly terminates access to this attribute.
+ virtual ~Attribute();
+
+ protected:
+ // Sets the attribute id.
+ virtual void p_setId(const hid_t new_id);
+
+ private:
+ hid_t id; // HDF5 attribute id
+
+ // This function contains the common code that is used by
+ // getTypeClass and various API functions getXxxType
+ // defined in AbstractDs for generic datatype and specific
+ // sub-types
+ virtual hid_t p_get_type() const;
+
+ // Reads variable or fixed len strings from this attribute.
+ void p_read_variable_len(const DataType& mem_type, H5std_string& strg) const;
+ void p_read_fixed_len(const DataType& mem_type, H5std_string& strg) const;
+
+ // do not inherit H5Object::iterateAttrs
+ int iterateAttrs() { return 0; }
+
+ // do not inherit H5Object::renameAttr
+ void renameAttr() {}
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Attribute_H
diff --git a/Resources/windows-libs/HDF5/include/H5B2pkg.h b/Resources/windows-libs/HDF5/include/H5B2pkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..b820853b4c557afd52c29b5fc4d72e4208c97675
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5B2pkg.h
@@ -0,0 +1,366 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Monday, January 31, 2005
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5B2 package. Source files outside the H5B2 package should
+ * include H5B2private.h instead.
+ */
+#ifndef H5B2_PACKAGE
+#error "Do not include this file outside the H5B2 package!"
+#endif
+
+#ifndef _H5B2pkg_H
+#define _H5B2pkg_H
+
+/* Get package's private header */
+#include "H5B2private.h"
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5FLprivate.h" /* Free Lists */
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Size of storage for number of records per node (on disk) */
+#define H5B2_SIZEOF_RECORDS_PER_NODE (unsigned)2
+
+/* Size of a "tree pointer" (on disk) */
+/* (essentially, the largest internal pointer allowed) */
+#define H5B2_TREE_POINTER_SIZE(h) ( \
+ (h)->sizeof_addr + \
+ H5B2_SIZEOF_RECORDS_PER_NODE + \
+ (h)->sizeof_size \
+ )
+
+/* Size of a internal node pointer (on disk) */
+#define H5B2_INT_POINTER_SIZE(h, d) ( \
+ (unsigned)(h)->sizeof_addr /* Address of child node */ \
+ + (h)->max_nrec_size /* # of records in child node */ \
+ + (h)->node_info[(d) - 1].cum_max_nrec_size /* Total # of records in child & below */ \
+ )
+
+/* Size of checksum information (on disk) */
+#define H5B2_SIZEOF_CHKSUM 4
+
+/* Format overhead for all v2 B-tree metadata in the file */
+#define H5B2_METADATA_PREFIX_SIZE ( \
+ (unsigned)H5_SIZEOF_MAGIC /* Signature */ \
+ + (unsigned)1 /* Version */ \
+ + (unsigned)1 /* Tree type */ \
+ + (unsigned)H5B2_SIZEOF_CHKSUM /* Metadata checksum */ \
+ )
+
+/* Size of the v2 B-tree header on disk */
+#define H5B2_HEADER_SIZE(h) ( \
+ /* General metadata fields */ \
+ H5B2_METADATA_PREFIX_SIZE \
+ \
+ /* Header specific fields */ \
+ + (unsigned)4 /* Node size, in bytes */ \
+ + (unsigned)2 /* Record size, in bytes */ \
+ + (unsigned)2 /* Depth of tree */ \
+ + (unsigned)1 /* Split % of full (as integer, ie. "98" means 98%) */ \
+ + (unsigned)1 /* Merge % of full (as integer, ie. "98" means 98%) */ \
+ + H5B2_TREE_POINTER_SIZE(h) /* Node pointer to root node in tree */ \
+ )
+
+/* Size of the v2 B-tree internal node prefix */
+#define H5B2_INT_PREFIX_SIZE ( \
+ /* General metadata fields */ \
+ H5B2_METADATA_PREFIX_SIZE \
+ \
+ /* Header specific fields */ \
+ /* <none> */ \
+ )
+
+/* Size of the v2 B-tree leaf node prefix */
+#define H5B2_LEAF_PREFIX_SIZE ( \
+ /* General metadata fields */ \
+ H5B2_METADATA_PREFIX_SIZE \
+ \
+ /* Header specific fields */ \
+ /* <none> */ \
+ )
+
+/* Macro to retrieve pointer to i'th native record for native record buffer */
+#define H5B2_NAT_NREC(b, hdr, idx) ((b) + (hdr)->nat_off[(idx)])
+
+/* Macro to retrieve pointer to i'th native record for internal node */
+#define H5B2_INT_NREC(i, hdr, idx) H5B2_NAT_NREC((i)->int_native, (hdr), (idx))
+
+/* Macro to retrieve pointer to i'th native record for leaf node */
+#define H5B2_LEAF_NREC(l, hdr, idx) H5B2_NAT_NREC((l)->leaf_native, (hdr), (idx))
+
+/* Number of records that fit into internal node */
+/* (accounts for extra node pointer by counting it in with the prefix bytes) */
+#define H5B2_NUM_INT_REC(h, d) \
+ (((h)->node_size - (H5B2_INT_PREFIX_SIZE + H5B2_INT_POINTER_SIZE(h, d))) / ((h)->rrec_size + H5B2_INT_POINTER_SIZE(h, d)))
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* A "node pointer" to another B-tree node */
+typedef struct {
+ haddr_t addr; /* Address of other node */
+ uint16_t node_nrec; /* Number of records used in node pointed to */
+ hsize_t all_nrec; /* Number of records in node pointed to and all it's children */
+} H5B2_node_ptr_t;
+
+/* Information about a node at a given depth */
+typedef struct {
+ unsigned max_nrec; /* Max. number of records in node */
+ unsigned split_nrec; /* Number of records to split node at */
+ unsigned merge_nrec; /* Number of records to merge node at */
+ hsize_t cum_max_nrec; /* Cumulative max. # of records below this node's depth */
+ uint8_t cum_max_nrec_size; /* Size to store cumulative max. # of records for this node (in bytes) */
+ H5FL_fac_head_t *nat_rec_fac; /* Factory for native record blocks */
+ H5FL_fac_head_t *node_ptr_fac; /* Factory for node pointer blocks */
+} H5B2_node_info_t;
+
+/* The B-tree header information */
+typedef struct H5B2_hdr_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* Internal B-tree information (stored) */
+ H5B2_node_ptr_t root; /* Node pointer to root node in B-tree */
+
+ /* Information set by user (stored) */
+ uint8_t split_percent; /* Percent full at which to split the node, when inserting */
+ uint8_t merge_percent; /* Percent full at which to merge the node, when deleting */
+ uint32_t node_size; /* Size of B-tree nodes, in bytes */
+ uint32_t rrec_size; /* Size of "raw" (on disk) record, in bytes */
+
+ /* Dynamic information (stored) */
+ uint16_t depth; /* B-tree's overall depth */
+
+ /* Derived information from user's information (not stored) */
+ uint8_t max_nrec_size; /* Size to store max. # of records in any node (in bytes) */
+
+ /* Shared internal data structures (not stored) */
+ H5F_t *f; /* Pointer to the file that the B-tree is in */
+ haddr_t addr; /* Address of B-tree header in the file */
+ size_t hdr_size; /* Size of the B-tree header on disk */
+ size_t rc; /* Reference count of nodes using this header */
+ size_t file_rc; /* Reference count of files using this header */
+ hbool_t pending_delete; /* B-tree is pending deletion */
+ uint8_t sizeof_size; /* Size of file sizes */
+ uint8_t sizeof_addr; /* Size of file addresses */
+ H5B2_remove_t remove_op; /* Callback operator for deleting B-tree */
+ void *remove_op_data;/* B-tree deletion callback's context */
+ uint8_t *page; /* Common disk page for I/O */
+ size_t *nat_off; /* Array of offsets of native records */
+ H5B2_node_info_t *node_info; /* Table of node info structs for current depth of B-tree */
+
+ /* Client information (not stored) */
+ const H5B2_class_t *cls; /* Class of B-tree client */
+ void *cb_ctx; /* Client callback context */
+} H5B2_hdr_t;
+
+/* B-tree leaf node information */
+typedef struct H5B2_leaf_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* Internal B-tree information */
+ H5B2_hdr_t *hdr; /* Pointer to the [pinned] v2 B-tree header */
+ uint8_t *leaf_native; /* Pointer to native records */
+ uint16_t nrec; /* Number of records in node */
+} H5B2_leaf_t;
+
+/* B-tree internal node information */
+typedef struct H5B2_internal_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* Internal B-tree information */
+ H5B2_hdr_t *hdr; /* Pointer to the [pinned] v2 B-tree header */
+ uint8_t *int_native; /* Pointer to native records */
+ H5B2_node_ptr_t *node_ptrs; /* Pointer to node pointers */
+ uint16_t nrec; /* Number of records in node */
+ uint16_t depth; /* Depth of this node in the B-tree */
+} H5B2_internal_t;
+
+/* v2 B-tree */
+struct H5B2_t {
+ H5B2_hdr_t *hdr; /* Pointer to internal v2 B-tree header info */
+ H5F_t *f; /* Pointer to file for v2 B-tree */
+};
+
+/* Callback info for loading a free space header into the cache */
+typedef struct H5B2_hdr_cache_ud_t {
+ H5F_t *f; /* File that v2 b-tree header is within */
+ void *ctx_udata; /* User-data for protecting */
+} H5B2_hdr_cache_ud_t;
+
+/* Callback info for loading a free space internal node into the cache */
+typedef struct H5B2_internal_cache_ud_t {
+ H5F_t *f; /* File that v2 b-tree header is within */
+ H5B2_hdr_t *hdr; /* v2 B-tree header */
+ unsigned nrec; /* Number of records in node to load */
+ unsigned depth; /* Depth of node to load */
+} H5B2_internal_cache_ud_t;
+
+/* Callback info for loading a free space leaf node into the cache */
+typedef struct H5B2_leaf_cache_ud_t {
+ H5F_t *f; /* File that v2 b-tree header is within */
+ H5B2_hdr_t *hdr; /* v2 B-tree header */
+ unsigned nrec; /* Number of records in node to load */
+} H5B2_leaf_cache_ud_t;
+
+#ifdef H5B2_TESTING
+/* Node information for testing */
+typedef struct {
+ unsigned depth; /* Depth of node */
+ unsigned nrec; /* Number of records in node */
+} H5B2_node_info_test_t;
+#endif /* H5B2_TESTING */
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* H5B2 header inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_BT2_HDR[1];
+
+/* H5B2 internal node inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_BT2_INT[1];
+
+/* H5B2 leaf node inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_BT2_LEAF[1];
+
+/* Declare a free list to manage the H5B2_internal_t struct */
+H5FL_EXTERN(H5B2_internal_t);
+
+/* Declare a free list to manage the H5B2_leaf_t struct */
+H5FL_EXTERN(H5B2_leaf_t);
+
+/* Internal v2 B-tree testing class */
+#ifdef H5B2_TESTING
+H5_DLLVAR const H5B2_class_t H5B2_TEST[1];
+#endif /* H5B2_TESTING */
+
+/* Array of v2 B-tree client ID -> client class mappings */
+extern const H5B2_class_t *const H5B2_client_class_g[H5B2_NUM_BTREE_ID];
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Routines for managing B-tree header info */
+H5_DLL H5B2_hdr_t *H5B2_hdr_alloc(H5F_t *f);
+H5_DLL haddr_t H5B2_hdr_create(H5F_t *f, hid_t dxpl_id,
+ const H5B2_create_t *cparam, void *ctx_udata);
+H5_DLL herr_t H5B2_hdr_init(H5B2_hdr_t *hdr, const H5B2_create_t *cparam,
+ void *ctx_udata, uint16_t depth);
+H5_DLL herr_t H5B2_hdr_incr(H5B2_hdr_t *hdr);
+H5_DLL herr_t H5B2_hdr_decr(H5B2_hdr_t *hdr);
+H5_DLL herr_t H5B2_hdr_fuse_incr(H5B2_hdr_t *hdr);
+H5_DLL size_t H5B2_hdr_fuse_decr(H5B2_hdr_t *hdr);
+H5_DLL herr_t H5B2_hdr_dirty(H5B2_hdr_t *hdr);
+H5_DLL herr_t H5B2_hdr_delete(H5B2_hdr_t *hdr, hid_t dxpl_id);
+
+/* Routines for operating on leaf nodes */
+H5B2_leaf_t *H5B2_protect_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id, haddr_t addr,
+ unsigned nrec, H5AC_protect_t rw);
+
+/* Routines for operating on internal nodes */
+H5_DLL H5B2_internal_t *H5B2_protect_internal(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ haddr_t addr, unsigned nrec, unsigned depth, H5AC_protect_t rw);
+
+/* Routines for allocating nodes */
+H5_DLL herr_t H5B2_split_root(H5B2_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5B2_create_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ H5B2_node_ptr_t *node_ptr);
+
+/* Routines for releasing structures */
+H5_DLL herr_t H5B2_hdr_free(H5B2_hdr_t *hdr);
+H5_DLL herr_t H5B2_leaf_free(H5B2_leaf_t *l);
+H5_DLL herr_t H5B2_internal_free(H5B2_internal_t *i);
+
+/* Routines for inserting records */
+H5_DLL herr_t H5B2_insert_internal(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ unsigned depth, unsigned *parent_cache_info_flags_ptr,
+ H5B2_node_ptr_t *curr_node_ptr, void *udata);
+H5_DLL herr_t H5B2_insert_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ H5B2_node_ptr_t *curr_node_ptr, void *udata);
+
+/* Routines for iterating over nodes/records */
+H5_DLL herr_t H5B2_iterate_node(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth,
+ const H5B2_node_ptr_t *curr_node, H5B2_operator_t op, void *op_data);
+H5_DLL herr_t H5B2_node_size(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ unsigned depth, const H5B2_node_ptr_t *curr_node, hsize_t *op_data);
+
+/* Routines for locating records */
+H5_DLL int H5B2_locate_record(const H5B2_class_t *type, unsigned nrec,
+ size_t *rec_off, const uint8_t *native, const void *udata, unsigned *idx);
+H5_DLL herr_t H5B2_neighbor_internal(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ unsigned depth, H5B2_node_ptr_t *curr_node_ptr, void *neighbor_loc,
+ H5B2_compare_t comp, void *udata, H5B2_found_t op, void *op_data);
+H5_DLL herr_t H5B2_neighbor_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ H5B2_node_ptr_t *curr_node_ptr, void *neighbor_loc,
+ H5B2_compare_t comp, void *udata, H5B2_found_t op, void *op_data);
+
+/* Routines for removing records */
+H5_DLL herr_t H5B2_remove_internal(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info,
+ hbool_t * parent_cache_info_dirtied_ptr, H5B2_node_ptr_t *curr_node_ptr, void *udata,
+ H5B2_remove_t op, void *op_data);
+H5_DLL herr_t H5B2_remove_leaf(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ H5B2_node_ptr_t *curr_node_ptr, void *udata, H5B2_remove_t op,
+ void *op_data);
+H5_DLL herr_t H5B2_remove_internal_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ hbool_t *depth_decreased, void *swap_loc, unsigned depth, H5AC_info_t *parent_cache_info,
+ hbool_t * parent_cache_info_dirtied_ptr, H5B2_node_ptr_t *curr_node_ptr, hsize_t idx,
+ H5B2_remove_t op, void *op_data);
+H5_DLL herr_t H5B2_remove_leaf_by_idx(H5B2_hdr_t *hdr, hid_t dxpl_id,
+ H5B2_node_ptr_t *curr_node_ptr, unsigned idx, H5B2_remove_t op,
+ void *op_data);
+
+/* Routines for deleting nodes */
+H5_DLL herr_t H5B2_delete_node(H5B2_hdr_t *hdr, hid_t dxpl_id, unsigned depth,
+ const H5B2_node_ptr_t *curr_node, H5B2_remove_t op, void *op_data);
+
+/* Debugging routines for dumping file structures */
+H5_DLL herr_t H5B2_hdr_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth, const H5B2_class_t *type, haddr_t obj_addr);
+H5_DLL herr_t H5B2_int_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth, const H5B2_class_t *type,
+ haddr_t hdr_addr, unsigned nrec, unsigned depth, haddr_t obj_addr);
+H5_DLL herr_t H5B2_leaf_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth, const H5B2_class_t *type,
+ haddr_t hdr_addr, unsigned nrec, haddr_t obj_addr);
+
+/* Testing routines */
+#ifdef H5B2_TESTING
+H5_DLL herr_t H5B2_get_root_addr_test(H5B2_t *bt2, haddr_t *root_addr);
+H5_DLL int H5B2_get_node_depth_test(H5B2_t *bt2, hid_t dxpl_id, void *udata);
+H5_DLL herr_t H5B2_get_node_info_test(H5B2_t *bt2, hid_t dxpl_id,
+ void *udata, H5B2_node_info_test_t *ninfo);
+#endif /* H5B2_TESTING */
+
+#endif /* _H5B2pkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5B2public.h b/Resources/windows-libs/HDF5/include/H5B2public.h
new file mode 100644
index 0000000000000000000000000000000000000000..43ec5d781b1ffa09d1381ec04b00b9f6c8f9c224
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5B2public.h
@@ -0,0 +1,54 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5B2public.h
+ * Jan 31 2005
+ * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ *
+ * Purpose: Public declarations for the v2 B-tree package.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#ifndef _H5B2public_H
+#define _H5B2public_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/**********************************/
+/* Public API Function Prototypes */
+/**********************************/
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5B2public_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Bpkg.h b/Resources/windows-libs/HDF5/include/H5Bpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..46e2b28fc1d3108fbaaad9aa2fb60d5d584376f7
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Bpkg.h
@@ -0,0 +1,98 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Thursday, May 15, 2003
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5B package. Source files outside the H5B package should
+ * include H5Bprivate.h instead.
+ */
+#ifndef H5B_PACKAGE
+#error "Do not include this file outside the H5B package!"
+#endif
+
+#ifndef _H5Bpkg_H
+#define _H5Bpkg_H
+
+/* Get package's private header */
+#include "H5Bprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5FLprivate.h" /* Free Lists */
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Get the native key at a given index */
+#define H5B_NKEY(b, shared, idx) ((b)->native + (shared)->nkey[(idx)])
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* The B-tree node as stored in memory... */
+typedef struct H5B_t {
+ H5AC_info_t cache_info; /* Information for H5AC cache functions */
+ /* _must_ be first field in structure */
+ H5RC_t *rc_shared; /*ref-counted shared info */
+ unsigned level; /*node level */
+ unsigned nchildren; /*number of child pointers */
+ haddr_t left; /*address of left sibling */
+ haddr_t right; /*address of right sibling */
+ uint8_t *native; /*array of keys in native format */
+ haddr_t *child; /*2k child pointers */
+} H5B_t;
+
+/* Callback info for loading a B-tree node into the cache */
+typedef struct H5B_cache_ud_t {
+ H5F_t *f; /* File that B-tree node is within */
+ const struct H5B_class_t *type; /* Type of tree */
+ H5RC_t *rc_shared; /* Ref-counted shared info */
+} H5B_cache_ud_t;
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* H5B header inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_BT[1];
+
+/* Declare a free list to manage the haddr_t sequence information */
+H5FL_SEQ_EXTERN(haddr_t);
+
+/* Declare a PQ free list to manage the native block information */
+H5FL_BLK_EXTERN(native_block);
+
+/* Declare a free list to manage the H5B_t struct */
+H5FL_EXTERN(H5B_t);
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+H5_DLL herr_t H5B_node_dest(H5B_t *bt);
+#ifdef H5B_DEBUG
+herr_t H5B_assert(H5F_t *f, hid_t dxpl_id, haddr_t addr, const H5B_class_t *type,
+ void *udata);
+#endif
+
+#endif /*_H5Bpkg_H*/
+
diff --git a/Resources/windows-libs/HDF5/include/H5Bpublic.h b/Resources/windows-libs/HDF5/include/H5Bpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..0016996075a42cc3e5ba720816e09ca2247e20f5
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Bpublic.h
@@ -0,0 +1,41 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Bproto.h
+ * Jul 10 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5B package.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Bpublic_H
+#define _H5Bpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5Classes.h b/Resources/windows-libs/HDF5/include/H5Classes.h
new file mode 100644
index 0000000000000000000000000000000000000000..de7cf4a739dd19739eab6dea98f58d80f5b29f01
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Classes.h
@@ -0,0 +1,52 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Classes_H
+#define __H5Classes_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+ class Exception;
+ class IdComponent;
+ class H5Location;
+ class H5Object;
+ class PropList;
+ class FileCreatPropList;
+ class FileAccPropList;
+ class DSetCreatPropList;
+ class DSetMemXferPropList;
+ class DTypePropList;
+ class DataType;
+ class DataSpace;
+ class AtomType;
+ class PredType;
+ class EnumType;
+ class IntType;
+ class FloatType;
+ class StrType;
+ class CompType;
+ //class RefType;
+ class AbstractDs;
+ class DataSet;
+ class Group;
+ class H5File;
+ class Attribute;
+ class H5Library;
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Classes_H
diff --git a/Resources/windows-libs/HDF5/include/H5CommonFG.h b/Resources/windows-libs/HDF5/include/H5CommonFG.h
new file mode 100644
index 0000000000000000000000000000000000000000..f11548a56fb769b69bd1db687b60b873fb433d0c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5CommonFG.h
@@ -0,0 +1,171 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __CommonFG_H
+#define __CommonFG_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+// Class forwarding
+class Group;
+class H5File;
+class ArrayType;
+class VarLenType;
+
+/*! \class CommonFG
+ \brief \a CommonFG is an abstract base class of H5File and H5Group.
+
+ It provides common operations of H5File and H5Group.
+*/
+class H5_DLLCPP CommonFG {
+ public:
+ // Creates a new group at this location which can be a file
+ // or another group.
+ Group createGroup(const char* name, size_t size_hint = 0) const;
+ Group createGroup(const H5std_string& name, size_t size_hint = 0) const;
+
+ // Opens an existing group in a location which can be a file
+ // or another group.
+ Group openGroup(const char* name) const;
+ Group openGroup(const H5std_string& name) const;
+
+ // Creates a new dataset at this location.
+ DataSet createDataSet(const char* name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist = DSetCreatPropList::DEFAULT) const;
+ DataSet createDataSet(const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist = DSetCreatPropList::DEFAULT) const;
+
+ // Opens an existing dataset at this location.
+ DataSet openDataSet(const char* name) const;
+ DataSet openDataSet(const H5std_string& name) const;
+
+ // Returns the value of a symbolic link.
+ H5std_string getLinkval(const char* link_name, size_t size=0) const;
+ H5std_string getLinkval(const H5std_string& link_name, size_t size=0) const;
+
+ // Returns the number of objects in this group.
+ hsize_t getNumObjs() const;
+
+ // Retrieves the name of an object in this group, given the
+ // object's index.
+ H5std_string getObjnameByIdx(hsize_t idx) const;
+ ssize_t getObjnameByIdx(hsize_t idx, char* name, size_t size) const;
+ ssize_t getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size) const;
+
+ // Retrieves the type of an object in this file or group, given the
+ // object's name
+ H5O_type_t childObjType(const H5std_string& objname) const;
+ H5O_type_t childObjType(const char* objname) const;
+ H5O_type_t childObjType(hsize_t index, H5_index_t index_type=H5_INDEX_NAME, H5_iter_order_t order=H5_ITER_INC, const char* objname=".") const;
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ // Returns the type of an object in this group, given the
+ // object's index.
+ H5G_obj_t getObjTypeByIdx(hsize_t idx) const;
+ H5G_obj_t getObjTypeByIdx(hsize_t idx, char* type_name) const;
+ H5G_obj_t getObjTypeByIdx(hsize_t idx, H5std_string& type_name) const;
+
+ // Returns information about an HDF5 object, given by its name,
+ // at this location.
+ void getObjinfo(const char* name, hbool_t follow_link, H5G_stat_t& statbuf) const;
+ void getObjinfo(const H5std_string& name, hbool_t follow_link, H5G_stat_t& statbuf) const;
+ void getObjinfo(const char* name, H5G_stat_t& statbuf) const;
+ void getObjinfo(const H5std_string& name, H5G_stat_t& statbuf) const;
+
+ // Iterates over the elements of this group - not implemented in
+ // C++ style yet.
+ int iterateElems(const char* name, int *idx, H5G_iterate_t op, void *op_data);
+ int iterateElems(const H5std_string& name, int *idx, H5G_iterate_t op, void *op_data);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+ // Creates a link of the specified type from new_name to current_name;
+ // both names are interpreted relative to the specified location id.
+ void link(H5L_type_t link_type, const char* curr_name, const char* new_name) const;
+ void link(H5L_type_t link_type, const H5std_string& curr_name, const H5std_string& new_name) const;
+
+ // Removes the specified name at this location.
+ void unlink(const char* name) const;
+ void unlink(const H5std_string& name) const;
+
+ // Mounts the file 'child' onto this location.
+ void mount(const char* name, const H5File& child, const PropList& plist) const;
+ void mount(const char* name, H5File& child, PropList& plist) const; // backward compatibility
+ void mount(const H5std_string& name, const H5File& child, const PropList& plist) const;
+ void mount(const H5std_string& name, H5File& child, PropList& plist) const; // backward compatibility
+
+ // Unmounts the file named 'name' from this parent location.
+ void unmount(const char* name) const;
+ void unmount(const H5std_string& name) const;
+
+ // Renames an object at this location.
+ void move(const char* src, const char* dst) const;
+ void move(const H5std_string& src, const H5std_string& dst) const;
+
+ // Opens a generic named datatype in this location.
+ DataType openDataType(const char* name) const;
+ DataType openDataType(const H5std_string& name) const;
+
+ // Opens a named array datatype in this location.
+ ArrayType openArrayType(const char* name) const;
+ ArrayType openArrayType(const H5std_string& name) const;
+
+ // Opens a named compound datatype in this location.
+ CompType openCompType(const char* name) const;
+ CompType openCompType(const H5std_string& name) const;
+
+ // Opens a named enumeration datatype in this location.
+ EnumType openEnumType(const char* name) const;
+ EnumType openEnumType(const H5std_string& name) const;
+
+ // Opens a named integer datatype in this location.
+ IntType openIntType(const char* name) const;
+ IntType openIntType(const H5std_string& name) const;
+
+ // Opens a named floating-point datatype in this location.
+ FloatType openFloatType(const char* name) const;
+ FloatType openFloatType(const H5std_string& name) const;
+
+ // Opens a named string datatype in this location.
+ StrType openStrType(const char* name) const;
+ StrType openStrType(const H5std_string& name) const;
+
+ // Opens a named variable length datatype in this location.
+ VarLenType openVarLenType(const char* name) const;
+ VarLenType openVarLenType(const H5std_string& name) const;
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ /// For subclasses, H5File and Group, to return the correct
+ /// object id, i.e. file or group id.
+ virtual hid_t getLocId() const = 0;
+
+
+ /// For subclasses, H5File and Group, to throw appropriate exception.
+ virtual void throwException(const H5std_string& func_name, const H5std_string& msg) const = 0;
+
+ // Default constructor.
+ CommonFG();
+
+ // Noop destructor.
+ virtual ~CommonFG();
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+}; // end of CommonFG declaration
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __CommonFG_H
+
diff --git a/Resources/windows-libs/HDF5/include/H5CompType.h b/Resources/windows-libs/HDF5/include/H5CompType.h
new file mode 100644
index 0000000000000000000000000000000000000000..bd6d76c96e612593b24122d50338dfb75dce200a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5CompType.h
@@ -0,0 +1,118 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5CompType_H
+#define __H5CompType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class CompType
+ \brief CompType is a derivative of a DataType and operates on HDF5
+ compound datatypes.
+*/
+class H5_DLLCPP CompType : public DataType {
+ public:
+ // Default constructor
+ CompType();
+
+ // Creates a compound datatype using an existing id
+ CompType( const hid_t existing_id );
+
+ // Creates a new compound datatype, given the type's size
+ CompType( size_t size ); // H5Tcreate
+
+ // Gets the compound datatype of the specified dataset
+ CompType( const DataSet& dataset ); // H5Dget_type
+
+ // Copy constructor - makes a copy of original object
+ CompType( const CompType& original );
+
+ // Returns the type class of the specified member of this compound
+ // datatype. It provides to the user a way of knowing what type
+ // to create another datatype of the same class
+ H5T_class_t getMemberClass( unsigned member_num ) const;
+
+ // Returns the index of a member in this compound data type.
+ int getMemberIndex(const char* name) const;
+ int getMemberIndex(const H5std_string& name) const;
+
+ // Returns the offset of a member of this compound datatype.
+ size_t getMemberOffset( unsigned memb_no ) const;
+
+ // Returns the name of a member of this compound datatype.
+ H5std_string getMemberName( unsigned member_num ) const;
+
+ // Returns the generic datatype of the specified member in
+ // this compound datatype.
+ DataType getMemberDataType( unsigned member_num ) const;
+
+ // Returns the array datatype of the specified member in
+ // this compound datatype.
+ ArrayType getMemberArrayType( unsigned member_num ) const;
+
+ // Returns the compound datatype of the specified member in
+ // this compound datatype.
+ CompType getMemberCompType( unsigned member_num ) const;
+
+ // Returns the enumeration datatype of the specified member in
+ // this compound datatype.
+ EnumType getMemberEnumType( unsigned member_num ) const;
+
+ // Returns the integer datatype of the specified member in
+ // this compound datatype.
+ IntType getMemberIntType( unsigned member_num ) const;
+
+ // Returns the floating-point datatype of the specified member in
+ // this compound datatype.
+ FloatType getMemberFloatType( unsigned member_num ) const;
+
+ // Returns the string datatype of the specified member in
+ // this compound datatype.
+ StrType getMemberStrType( unsigned member_num ) const;
+
+ // Returns the variable length datatype of the specified member in
+ // this compound datatype.
+ VarLenType getMemberVarLenType( unsigned member_num ) const;
+
+ // Returns the number of members in this compound datatype.
+ int getNmembers() const;
+
+ // Adds a new member to this compound datatype.
+ void insertMember( const H5std_string& name, size_t offset, const DataType& new_member ) const;
+
+ // Recursively removes padding from within this compound datatype.
+ void pack() const;
+
+ // Sets the total size for this compound datatype.
+ void setSize(size_t size) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("CompType"); }
+
+ // Noop destructor.
+ virtual ~CompType();
+
+ private:
+ // Contains common code that is used by the member functions
+ // getMemberXxxType
+ hid_t p_get_member_type(unsigned member_num) const;
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5CompType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Cpkg.h b/Resources/windows-libs/HDF5/include/H5Cpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..af39dfb9a22aaf3c1f2ed6242ff608622d5f2d94
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Cpkg.h
@@ -0,0 +1,3566 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: John Mainzer -- 10/12/04
+ *
+ * Purpose: This file contains declarations which are normally visible
+ * only within the H5C package.
+ *
+ * Source files outside the H5C package should include
+ * H5Cprivate.h instead.
+ *
+ * The one exception to this rule is test/cache.c. The test
+ * code is easier to write if it can look at the cache's
+ * internal data structures. Indeed, this is the main
+ * reason why this file was created.
+ */
+
+#ifndef H5C_PACKAGE
+#error "Do not include this file outside the H5C package!"
+#endif
+
+#ifndef _H5Cpkg_H
+#define _H5Cpkg_H
+
+
+/* Get package's private header */
+#include "H5Cprivate.h"
+
+
+/* Get needed headers */
+#include "H5SLprivate.h" /* Skip lists */
+
+/* With the introduction of the fractal heap, it is now possible for
+ * entries to be dirtied, resized, and/or moved in the flush callbacks.
+ * As a result, on flushes, it may be necessary to make multiple passes
+ * through the slist before it is empty. The H5C__MAX_PASSES_ON_FLUSH
+ * #define is used to set an upper limit on the number of passes.
+ * The current value was obtained via personal communication with
+ * Quincey. I have applied a fudge factor of 2.
+ *
+ * -- JRM
+ */
+
+#define H5C__MAX_PASSES_ON_FLUSH 4
+
+
+
+/****************************************************************************
+ *
+ * structure H5C_t
+ *
+ * Catchall structure for all variables specific to an instance of the cache.
+ *
+ * While the individual fields of the structure are discussed below, the
+ * following overview may be helpful.
+ *
+ * Entries in the cache are stored in an instance of H5TB_TREE, indexed on
+ * the entry's disk address. While the H5TB_TREE is less efficient than
+ * hash table, it keeps the entries in address sorted order. As flushes
+ * in parallel mode are more efficient if they are issued in increasing
+ * address order, this is a significant benefit. Also the H5TB_TREE code
+ * was readily available, which reduced development time.
+ *
+ * While the cache was designed with multiple replacement policies in mind,
+ * at present only a modified form of LRU is supported.
+ *
+ * JRM - 4/26/04
+ *
+ * Profiling has indicated that searches in the instance of H5TB_TREE are
+ * too expensive. To deal with this issue, I have augmented the cache
+ * with a hash table in which all entries will be stored. Given the
+ * advantages of flushing entries in increasing address order, the TBBT
+ * is retained, but only dirty entries are stored in it. At least for
+ * now, we will leave entries in the TBBT after they are flushed.
+ *
+ * Note that index_size and index_len now refer to the total size of
+ * and number of entries in the hash table.
+ *
+ * JRM - 7/19/04
+ *
+ * The TBBT has since been replaced with a skip list. This change
+ * greatly predates this note.
+ *
+ * JRM - 9/26/05
+ *
+ * magic: Unsigned 32 bit integer always set to H5C__H5C_T_MAGIC.
+ * This field is used to validate pointers to instances of
+ * H5C_t.
+ *
+ * flush_in_progress: Boolean flag indicating whether a flush is in
+ * progress.
+ *
+ * trace_file_ptr: File pointer pointing to the trace file, which is used
+ * to record cache operations for use in simulations and design
+ * studies. This field will usually be NULL, indicating that
+ * no trace file should be recorded.
+ *
+ * Since much of the code supporting the parallel metadata
+ * cache is in H5AC, we don't write the trace file from
+ * H5C. Instead, H5AC reads the trace_file_ptr as needed.
+ *
+ * When we get to using H5C in other places, we may add
+ * code to write trace file data at the H5C level as well.
+ *
+ * aux_ptr: Pointer to void used to allow wrapper code to associate
+ * its data with an instance of H5C_t. The H5C cache code
+ * sets this field to NULL, and otherwise leaves it alone.
+ *
+ * max_type_id: Integer field containing the maximum type id number assigned
+ * to a type of entry in the cache. All type ids from 0 to
+ * max_type_id inclusive must be defined. The names of the
+ * types are stored in the type_name_table discussed below, and
+ * indexed by the ids.
+ *
+ * type_name_table_ptr: Pointer to an array of pointer to char of length
+ * max_type_id + 1. The strings pointed to by the entries
+ * in the array are the names of the entry types associated
+ * with the indexing type IDs.
+ *
+ * max_cache_size: Nominal maximum number of bytes that may be stored in the
+ * cache. This value should be viewed as a soft limit, as the
+ * cache can exceed this value under the following circumstances:
+ *
+ * a) All entries in the cache are protected, and the cache is
+ * asked to insert a new entry. In this case the new entry
+ * will be created. If this causes the cache to exceed
+ * max_cache_size, it will do so. The cache will attempt
+ * to reduce its size as entries are unprotected.
+ *
+ * b) When running in parallel mode, the cache may not be
+ * permitted to flush a dirty entry in response to a read.
+ * If there are no clean entries available to evict, the
+ * cache will exceed its maximum size. Again the cache
+ * will attempt to reduce its size to the max_cache_size
+ * limit on the next cache write.
+ *
+ * c) When an entry increases in size, the cache may exceed
+ * the max_cache_size limit until the next time the cache
+ * attempts to load or insert an entry.
+ *
+ * min_clean_size: Nominal minimum number of clean bytes in the cache.
+ * The cache attempts to maintain this number of bytes of
+ * clean data so as to avoid case b) above. Again, this is
+ * a soft limit.
+ *
+ *
+ * In addition to the call back functions required for each entry, the
+ * cache requires the following call back functions for this instance of
+ * the cache as a whole:
+ *
+ * check_write_permitted: In certain applications, the cache may not
+ * be allowed to write to disk at certain time. If specified,
+ * the check_write_permitted function is used to determine if
+ * a write is permissible at any given point in time.
+ *
+ * If no such function is specified (i.e. this field is NULL),
+ * the cache uses the following write_permitted field to
+ * determine whether writes are permitted.
+ *
+ * write_permitted: If check_write_permitted is NULL, this boolean flag
+ * indicates whether writes are permitted.
+ *
+ * log_flush: If provided, this function is called whenever a dirty
+ * entry is flushed to disk.
+ *
+ *
+ * In cases where memory is plentiful, and performance is an issue, it
+ * is useful to disable all cache evictions, and thereby postpone metadata
+ * writes. The following field is used to implement this.
+ *
+ * evictions_enabled: Boolean flag that is initialized to TRUE. When
+ * this flag is set to FALSE, the metadata cache will not
+ * attempt to evict entries to make space for newly protected
+ * entries, and instead the will grow without limit.
+ *
+ * Needless to say, this feature must be used with care.
+ *
+ *
+ * The cache requires an index to facilitate searching for entries. The
+ * following fields support that index.
+ *
+ * index_len: Number of entries currently in the hash table used to index
+ * the cache.
+ *
+ * index_size: Number of bytes of cache entries currently stored in the
+ * hash table used to index the cache.
+ *
+ * This value should not be mistaken for footprint of the
+ * cache in memory. The average cache entry is small, and
+ * the cache has a considerable overhead. Multiplying the
+ * index_size by two should yield a conservative estimate
+ * of the cache's memory footprint.
+ *
+ * clean_index_size: Number of bytes of clean entries currently stored in
+ * the hash table. Note that the index_size field (above)
+ * is also the sum of the sizes of all entries in the cache.
+ * Thus we should have the invarient that clean_index_size +
+ * dirty_index_size == index_size.
+ *
+ * WARNING:
+ *
+ * 1) The clean_index_size field is not maintained by the
+ * index macros, as the hash table doesn't care whether
+ * the entry is clean or dirty. Instead the field is
+ * maintained in the H5C__UPDATE_RP macros.
+ *
+ * 2) The value of the clean_index_size must not be mistaken
+ * for the current clean size of the cache. Rather, the
+ * clean size of the cache is the current value of
+ * clean_index_size plus the amount of empty space (if any)
+ * in the cache.
+ *
+ * dirty_index_size: Number of bytes of dirty entries currently stored in
+ * the hash table. Note that the index_size field (above)
+ * is also the sum of the sizes of all entries in the cache.
+ * Thus we should have the invarient that clean_index_size +
+ * dirty_index_size == index_size.
+ *
+ * WARNING:
+ *
+ * 1) The dirty_index_size field is not maintained by the
+ * index macros, as the hash table doesn't care whether
+ * the entry is clean or dirty. Instead the field is
+ * maintained in the H5C__UPDATE_RP macros.
+ *
+ * index: Array of pointer to H5C_cache_entry_t of size
+ * H5C__HASH_TABLE_LEN. At present, this value is a power
+ * of two, not the usual prime number.
+ *
+ * I hope that the variable size of cache elements, the large
+ * hash table size, and the way in which HDF5 allocates space
+ * will combine to avoid problems with periodicity. If so, we
+ * can use a trivial hash function (a bit-and and a 3 bit left
+ * shift) with some small savings.
+ *
+ * If not, it will become evident in the statistics. Changing
+ * to the usual prime number length hash table will require
+ * changing the H5C__HASH_FCN macro and the deletion of the
+ * H5C__HASH_MASK #define. No other changes should be required.
+ *
+ *
+ * When we flush the cache, we need to write entries out in increasing
+ * address order. An instance of a skip list is used to store dirty entries in
+ * sorted order. Whether it is cheaper to sort the dirty entries as needed,
+ * or to maintain the list is an open question. At a guess, it depends
+ * on how frequently the cache is flushed. We will see how it goes.
+ *
+ * For now at least, I will not remove dirty entries from the list as they
+ * are flushed. (this has been changed -- dirty entries are now removed from
+ * the skip list as they are flushed. JRM - 10/25/05)
+ *
+ * slist_len: Number of entries currently in the skip list
+ * used to maintain a sorted list of dirty entries in the
+ * cache.
+ *
+ * slist_size: Number of bytes of cache entries currently stored in the
+ * skip list used to maintain a sorted list of
+ * dirty entries in the cache.
+ *
+ * slist_ptr: pointer to the instance of H5SL_t used maintain a sorted
+ * list of dirty entries in the cache. This sorted list has
+ * two uses:
+ *
+ * a) It allows us to flush dirty entries in increasing address
+ * order, which results in significant savings.
+ *
+ * b) It facilitates checking for adjacent dirty entries when
+ * attempting to evict entries from the cache. While we
+ * don't use this at present, I hope that this will allow
+ * some optimizations when I get to it.
+ *
+ * With the addition of the fractal heap, the cache must now deal with
+ * the case in which entries may be dirtied, moved, or have their sizes
+ * changed during a flush. To allow sanity checks in this situation, the
+ * following two fields have been added. They are only compiled in when
+ * H5C_DO_SANITY_CHECKS is TRUE.
+ *
+ * slist_len_increase: Number of entries that have been added to the
+ * slist since the last time this field was set to zero.
+ *
+ * slist_size_increase: Total size of all entries that have been added
+ * to the slist since the last time this field was set to
+ * zero.
+ *
+ *
+ * When a cache entry is protected, it must be removed from the LRU
+ * list(s) as it cannot be either flushed or evicted until it is unprotected.
+ * The following fields are used to implement the protected list (pl).
+ *
+ * pl_len: Number of entries currently residing on the protected list.
+ *
+ * pl_size: Number of bytes of cache entries currently residing on the
+ * protected list.
+ *
+ * pl_head_ptr: Pointer to the head of the doubly linked list of protected
+ * entries. Note that cache entries on this list are linked
+ * by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * pl_tail_ptr: Pointer to the tail of the doubly linked list of protected
+ * entries. Note that cache entries on this list are linked
+ * by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ *
+ * For very frequently used entries, the protect/unprotect overhead can
+ * become burdensome. To avoid this overhead, I have modified the cache
+ * to allow entries to be "pinned". A pinned entry is similar to a
+ * protected entry, in the sense that it cannot be evicted, and that
+ * the entry can be modified at any time.
+ *
+ * Pinning an entry has the following implications:
+ *
+ * 1) A pinned entry cannot be evicted. Thus unprotected
+ * pinned entries reside in the pinned entry list, instead
+ * of the LRU list(s) (or other lists maintained by the current
+ * replacement policy code).
+ *
+ * 2) A pinned entry can be accessed or modified at any time.
+ * Therefore, the cache must check with the entry owner
+ * before flushing it. If permission is denied, the
+ * cache just skips the entry in the flush.
+ *
+ * 3) A pinned entry can be marked as dirty (and possibly
+ * change size) while it is unprotected.
+ *
+ * 4) The flush-destroy code must allow pinned entries to
+ * be unpinned (and possibly unprotected) during the
+ * flush.
+ *
+ * Since pinned entries cannot be evicted, they must be kept on a pinned
+ * entry list, instead of being entrusted to the replacement policy code.
+ *
+ * Maintaining the pinned entry list requires the following fields:
+ *
+ * pel_len: Number of entries currently residing on the pinned
+ * entry list.
+ *
+ * pel_size: Number of bytes of cache entries currently residing on
+ * the pinned entry list.
+ *
+ * pel_head_ptr: Pointer to the head of the doubly linked list of pinned
+ * but not protected entries. Note that cache entries on
+ * this list are linked by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * pel_tail_ptr: Pointer to the tail of the doubly linked list of pinned
+ * but not protected entries. Note that cache entries on
+ * this list are linked by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ *
+ * The cache must have a replacement policy, and the fields supporting this
+ * policy must be accessible from this structure.
+ *
+ * While there has been interest in several replacement policies for
+ * this cache, the initial development schedule is tight. Thus I have
+ * elected to support only a modified LRU policy for the first cut.
+ *
+ * To further simplify matters, I have simply included the fields needed
+ * by the modified LRU in this structure. When and if we add support for
+ * other policies, it will probably be easiest to just add the necessary
+ * fields to this structure as well -- we only create one instance of this
+ * structure per file, so the overhead is not excessive.
+ *
+ *
+ * Fields supporting the modified LRU policy:
+ *
+ * See most any OS text for a discussion of the LRU replacement policy.
+ *
+ * When operating in parallel mode, we must ensure that a read does not
+ * cause a write. If it does, the process will hang, as the write will
+ * be collective and the other processes will not know to participate.
+ *
+ * To deal with this issue, I have modified the usual LRU policy by adding
+ * clean and dirty LRU lists to the usual LRU list.
+ *
+ * The clean LRU list is simply the regular LRU list with all dirty cache
+ * entries removed.
+ *
+ * Similarly, the dirty LRU list is the regular LRU list with all the clean
+ * cache entries removed.
+ *
+ * When reading in parallel mode, we evict from the clean LRU list only.
+ * This implies that we must try to ensure that the clean LRU list is
+ * reasonably well stocked at all times.
+ *
+ * We attempt to do this by trying to flush enough entries on each write
+ * to keep the cLRU_list_size >= min_clean_size.
+ *
+ * Even if we start with a completely clean cache, a sequence of protects
+ * without unprotects can empty the clean LRU list. In this case, the
+ * cache must grow temporarily. At the next write, we will attempt to
+ * evict enough entries to reduce index_size to less than max_cache_size.
+ * While this will usually be possible, all bets are off if enough entries
+ * are protected.
+ *
+ * Discussions of the individual fields used by the modified LRU replacement
+ * policy follow:
+ *
+ * LRU_list_len: Number of cache entries currently on the LRU list.
+ *
+ * Observe that LRU_list_len + pl_len must always equal
+ * index_len.
+ *
+ * LRU_list_size: Number of bytes of cache entries currently residing on the
+ * LRU list.
+ *
+ * Observe that LRU_list_size + pl_size must always equal
+ * index_size.
+ *
+ * LRU_head_ptr: Pointer to the head of the doubly linked LRU list. Cache
+ * entries on this list are linked by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * LRU_tail_ptr: Pointer to the tail of the doubly linked LRU list. Cache
+ * entries on this list are linked by their next and prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * cLRU_list_len: Number of cache entries currently on the clean LRU list.
+ *
+ * Observe that cLRU_list_len + dLRU_list_len must always
+ * equal LRU_list_len.
+ *
+ * cLRU_list_size: Number of bytes of cache entries currently residing on
+ * the clean LRU list.
+ *
+ * Observe that cLRU_list_size + dLRU_list_size must always
+ * equal LRU_list_size.
+ *
+ * cLRU_head_ptr: Pointer to the head of the doubly linked clean LRU list.
+ * Cache entries on this list are linked by their aux_next and
+ * aux_prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * cLRU_tail_ptr: Pointer to the tail of the doubly linked clean LRU list.
+ * Cache entries on this list are linked by their aux_next and
+ * aux_prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * dLRU_list_len: Number of cache entries currently on the dirty LRU list.
+ *
+ * Observe that cLRU_list_len + dLRU_list_len must always
+ * equal LRU_list_len.
+ *
+ * dLRU_list_size: Number of cache entries currently on the dirty LRU list.
+ *
+ * Observe that cLRU_list_len + dLRU_list_len must always
+ * equal LRU_list_len.
+ *
+ * dLRU_head_ptr: Pointer to the head of the doubly linked dirty LRU list.
+ * Cache entries on this list are linked by their aux_next and
+ * aux_prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ * dLRU_tail_ptr: Pointer to the tail of the doubly linked dirty LRU list.
+ * Cache entries on this list are linked by their aux_next and
+ * aux_prev fields.
+ *
+ * This field is NULL if the list is empty.
+ *
+ *
+ * Automatic cache size adjustment:
+ *
+ * While the default cache size is adequate for most cases, we can run into
+ * cases where the default is too small. Ideally, we will let the user
+ * adjust the cache size as required. However, this is not possible in all
+ * cases. Thus I have added automatic cache size adjustment code.
+ *
+ * The configuration for the automatic cache size adjustment is stored in
+ * the structure described below:
+ *
+ * size_increase_possible: Depending on the configuration data given
+ * in the resize_ctl field, it may or may not be possible
+ * to increase the size of the cache. Rather than test for
+ * all the ways this can happen, we simply set this flag when
+ * we receive a new configuration.
+ *
+ * flash_size_increase_possible: Depending on the configuration data given
+ * in the resize_ctl field, it may or may not be possible
+ * for a flash size increase to occur. We set this flag
+ * whenever we receive a new configuration so as to avoid
+ * repeated calculations.
+ *
+ * flash_size_increase_threshold: If a flash cache size increase is possible,
+ * this field is used to store the minimum size of a new entry
+ * or size increase needed to trigger a flash cache size
+ * increase. Note that this field must be updated whenever
+ * the size of the cache is changed.
+ *
+ * size_decrease_possible: Depending on the configuration data given
+ * in the resize_ctl field, it may or may not be possible
+ * to decrease the size of the cache. Rather than test for
+ * all the ways this can happen, we simply set this flag when
+ * we receive a new configuration.
+ *
+ * cache_full: Boolean flag used to keep track of whether the cache is
+ * full, so we can refrain from increasing the size of a
+ * cache which hasn't used up the space alotted to it.
+ *
+ * The field is initialized to FALSE, and then set to TRUE
+ * whenever we attempt to make space in the cache.
+ *
+ * resize_enabled: This is another convenience flag which is set whenever
+ * a new set of values for resize_ctl are provided. Very
+ * simply,
+ *
+ * resize_enabled = size_increase_possible ||
+ * size_decrease_possible;
+ *
+ * size_decreased: Boolean flag set to TRUE whenever the maximun cache
+ * size is decreased. The flag triggers a call to
+ * H5C_make_space_in_cache() on the next call to H5C_protect().
+ *
+ * resize_ctl: Instance of H5C_auto_size_ctl_t containing configuration
+ * data for automatic cache resizing.
+ *
+ * epoch_markers_active: Integer field containing the number of epoch
+ * markers currently in use in the LRU list. This value
+ * must be in the range [0, H5C__MAX_EPOCH_MARKERS - 1].
+ *
+ * epoch_marker_active: Array of boolean of length H5C__MAX_EPOCH_MARKERS.
+ * This array is used to track which epoch markers are currently
+ * in use.
+ *
+ * epoch_marker_ringbuf: Array of int of length H5C__MAX_EPOCH_MARKERS + 1.
+ *
+ * To manage the epoch marker cache entries, it is necessary
+ * to track their order in the LRU list. This is done with
+ * epoch_marker_ringbuf. When markers are inserted at the
+ * head of the LRU list, the index of the marker in the
+ * epoch_markers array is inserted at the tail of the ring
+ * buffer. When it becomes the epoch_marker_active'th marker
+ * in the LRU list, it will have worked its way to the head
+ * of the ring buffer as well. This allows us to remove it
+ * without scanning the LRU list if such is required.
+ *
+ * epoch_marker_ringbuf_first: Integer field containing the index of the
+ * first entry in the ring buffer.
+ *
+ * epoch_marker_ringbuf_last: Integer field containing the index of the
+ * last entry in the ring buffer.
+ *
+ * epoch_marker_ringbuf_size: Integer field containing the number of entries
+ * in the ring buffer.
+ *
+ * epoch_markers: Array of instances of H5C_cache_entry_t of length
+ * H5C__MAX_EPOCH_MARKERS. The entries are used as markers
+ * in the LRU list to identify cache entries that haven't
+ * been accessed for some (small) specified number of
+ * epochs. These entries (if any) can then be evicted and
+ * the cache size reduced -- ideally without evicting any
+ * of the current working set. Needless to say, the epoch
+ * length and the number of epochs before an unused entry
+ * must be chosen so that all, or almost all, the working
+ * set will be accessed before the limit.
+ *
+ * Epoch markers only appear in the LRU list, never in
+ * the index or slist. While they are of type
+ * H5C__EPOCH_MARKER_TYPE, and have associated class
+ * functions, these functions should never be called.
+ *
+ * The addr fields of these instances of H5C_cache_entry_t
+ * are set to the index of the instance in the epoch_markers
+ * array, the size is set to 0, and the type field points
+ * to the constant structure epoch_marker_class defined
+ * in H5C.c. The next and prev fields are used as usual
+ * to link the entry into the LRU list.
+ *
+ * All other fields are unused.
+ *
+ *
+ * Cache hit rate collection fields:
+ *
+ * We supply the current cache hit rate on request, so we must keep a
+ * simple cache hit rate computation regardless of whether statistics
+ * collection is enabled. The following fields support this capability.
+ *
+ * cache_hits: Number of cache hits since the last time the cache hit
+ * rate statistics were reset. Note that when automatic cache
+ * re-sizing is enabled, this field will be reset every automatic
+ * resize epoch.
+ *
+ * cache_accesses: Number of times the cache has been accessed while
+ * since the last since the last time the cache hit rate statistics
+ * were reset. Note that when automatic cache re-sizing is enabled,
+ * this field will be reset every automatic resize epoch.
+ *
+ *
+ * Statistics collection fields:
+ *
+ * When enabled, these fields are used to collect statistics as described
+ * below. The first set are collected only when H5C_COLLECT_CACHE_STATS
+ * is true.
+ *
+ * hits: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type id
+ * equal to the array index has been in cache when requested in
+ * the current epoch.
+ *
+ * misses: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type id
+ * equal to the array index has not been in cache when
+ * requested in the current epoch.
+ *
+ * write_protects: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The
+ * cells are used to record the number of times an entry with
+ * type id equal to the array index has been write protected
+ * in the current epoch.
+ *
+ * Observe that (hits + misses) = (write_protects + read_protects).
+ *
+ * read_protects: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The
+ * cells are used to record the number of times an entry with
+ * type id equal to the array index has been read protected in
+ * the current epoch.
+ *
+ * Observe that (hits + misses) = (write_protects + read_protects).
+ *
+ * max_read_protects: Array of int32 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to maximum number of simultaneous read
+ * protects on any entry with type id equal to the array index
+ * in the current epoch.
+ *
+ * insertions: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been inserted into the
+ * cache in the current epoch.
+ *
+ * pinned_insertions: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to record the number of times an entry
+ * with type id equal to the array index has been inserted
+ * pinned into the cache in the current epoch.
+ *
+ * clears: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been cleared in the current
+ * epoch.
+ *
+ * flushes: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type id
+ * equal to the array index has been written to disk in the
+ * current epoch.
+ *
+ * evictions: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type id
+ * equal to the array index has been evicted from the cache in
+ * the current epoch.
+ *
+ * moves: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been moved in the current
+ * epoch.
+ *
+ * entry_flush_moves: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to record the number of times an entry
+ * with type id equal to the array index has been moved
+ * during its flush callback in the current epoch.
+ *
+ * cache_flush_moves: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to record the number of times an entry
+ * with type id equal to the array index has been moved
+ * during a cache flush in the current epoch.
+ *
+ * pins: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been pinned in the current
+ * epoch.
+ *
+ * unpins: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been unpinned in the current
+ * epoch.
+ *
+ * dirty_pins: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the number of times an entry with type
+ * id equal to the array index has been marked dirty while pinned
+ * in the current epoch.
+ *
+ * pinned_flushes: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The
+ * cells are used to record the number of times an entry
+ * with type id equal to the array index has been flushed while
+ * pinned in the current epoch.
+ *
+ * pinned_cleared: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1. The
+ * cells are used to record the number of times an entry
+ * with type id equal to the array index has been cleared while
+ * pinned in the current epoch.
+ *
+ * size_increases: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to record the number of times an entry
+ * with type id equal to the array index has increased in
+ * size in the current epoch.
+ *
+ * size_decreases: Array of int64 of length H5C__MAX_NUM_TYPE_IDS + 1.
+ * The cells are used to record the number of times an entry
+ * with type id equal to the array index has decreased in
+ * size in the current epoch.
+ *
+ * entry_flush_size_changes: Array of int64 of length
+ * H5C__MAX_NUM_TYPE_IDS + 1. The cells are used to record
+ * the number of times an entry with type id equal to the
+ * array index has changed size while in its flush callback.
+ *
+ * cache_flush_size_changes: Array of int64 of length
+ * H5C__MAX_NUM_TYPE_IDS + 1. The cells are used to record
+ * the number of times an entry with type id equal to the
+ * array index has changed size during a cache flush
+ *
+ * total_ht_insertions: Number of times entries have been inserted into the
+ * hash table in the current epoch.
+ *
+ * total_ht_deletions: Number of times entries have been deleted from the
+ * hash table in the current epoch.
+ *
+ * successful_ht_searches: int64 containing the total number of successful
+ * searches of the hash table in the current epoch.
+ *
+ * total_successful_ht_search_depth: int64 containing the total number of
+ * entries other than the targets examined in successful
+ * searches of the hash table in the current epoch.
+ *
+ * failed_ht_searches: int64 containing the total number of unsuccessful
+ * searches of the hash table in the current epoch.
+ *
+ * total_failed_ht_search_depth: int64 containing the total number of
+ * entries examined in unsuccessful searches of the hash
+ * table in the current epoch.
+ *
+ * max_index_len: Largest value attained by the index_len field in the
+ * current epoch.
+ *
+ * max_index_size: Largest value attained by the index_size field in the
+ * current epoch.
+ *
+ * max_clean_index_size: Largest value attained by the clean_index_size field
+ * in the current epoch.
+ *
+ * max_dirty_index_size: Largest value attained by the dirty_index_size field
+ * in the current epoch.
+ *
+ * max_slist_len: Largest value attained by the slist_len field in the
+ * current epoch.
+ *
+ * max_slist_size: Largest value attained by the slist_size field in the
+ * current epoch.
+ *
+ * max_pl_len: Largest value attained by the pl_len field in the
+ * current epoch.
+ *
+ * max_pl_size: Largest value attained by the pl_size field in the
+ * current epoch.
+ *
+ * max_pel_len: Largest value attained by the pel_len field in the
+ * current epoch.
+ *
+ * max_pel_size: Largest value attained by the pel_size field in the
+ * current epoch.
+ *
+ * calls_to_msic: Total number of calls to H5C_make_space_in_cache
+ *
+ * total_entries_skipped_in_msic: Number of clean entries skipped while
+ * enforcing the min_clean_fraction in H5C_make_space_in_cache().
+ *
+ * total_entries_scanned_in_msic: Number of clean entries skipped while
+ * enforcing the min_clean_fraction in H5C_make_space_in_cache().
+ *
+ * max_entries_skipped_in_msic: Maximum number of clean entries skipped
+ * in any one call to H5C_make_space_in_cache().
+ *
+ * max_entries_scanned_in_msic: Maximum number of entries scanned over
+ * in any one call to H5C_make_space_in_cache().
+ *
+ * entries_scanned_to_make_space: Number of entries scanned only when looking
+ * for entries to evict in order to make space in cache.
+
+ * The remaining stats are collected only when both H5C_COLLECT_CACHE_STATS
+ * and H5C_COLLECT_CACHE_ENTRY_STATS are true.
+ *
+ * max_accesses: Array of int32 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the maximum number of times any single
+ * entry with type id equal to the array index has been
+ * accessed in the current epoch.
+ *
+ * min_accesses: Array of int32 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the minimum number of times any single
+ * entry with type id equal to the array index has been
+ * accessed in the current epoch.
+ *
+ * max_clears: Array of int32 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the maximum number of times any single
+ * entry with type id equal to the array index has been cleared
+ * in the current epoch.
+ *
+ * max_flushes: Array of int32 of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the maximum number of times any single
+ * entry with type id equal to the array index has been
+ * flushed in the current epoch.
+ *
+ * max_size: Array of size_t of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the maximum size of any single entry
+ * with type id equal to the array index that has resided in
+ * the cache in the current epoch.
+ *
+ * max_pins: Array of size_t of length H5C__MAX_NUM_TYPE_IDS + 1. The cells
+ * are used to record the maximum number of times that any single
+ * entry with type id equal to the array index that has been
+ * marked as pinned in the cache in the current epoch.
+ *
+ *
+ * Fields supporting testing:
+ *
+ * prefix Array of char used to prefix debugging output. The
+ * field is intended to allow marking of output of with
+ * the processes mpi rank.
+ *
+ ****************************************************************************/
+
+#define H5C__HASH_TABLE_LEN (64 * 1024) /* must be a power of 2 */
+
+#define H5C__H5C_T_MAGIC 0x005CAC0E
+#define H5C__MAX_NUM_TYPE_IDS 19
+#define H5C__PREFIX_LEN 32
+
+struct H5C_t
+{
+ uint32_t magic;
+
+ hbool_t flush_in_progress;
+
+ FILE * trace_file_ptr;
+
+ void * aux_ptr;
+
+ int32_t max_type_id;
+ const char * (* type_name_table_ptr);
+
+ size_t max_cache_size;
+ size_t min_clean_size;
+
+ H5C_write_permitted_func_t check_write_permitted;
+ hbool_t write_permitted;
+
+ H5C_log_flush_func_t log_flush;
+
+ hbool_t evictions_enabled;
+
+ int32_t index_len;
+ size_t index_size;
+ size_t clean_index_size;
+ size_t dirty_index_size;
+ H5C_cache_entry_t * (index[H5C__HASH_TABLE_LEN]);
+
+
+ int32_t slist_len;
+ size_t slist_size;
+ H5SL_t * slist_ptr;
+#if H5C_DO_SANITY_CHECKS
+ int64_t slist_len_increase;
+ int64_t slist_size_increase;
+#endif /* H5C_DO_SANITY_CHECKS */
+
+ int32_t pl_len;
+ size_t pl_size;
+ H5C_cache_entry_t * pl_head_ptr;
+ H5C_cache_entry_t * pl_tail_ptr;
+
+ int32_t pel_len;
+ size_t pel_size;
+ H5C_cache_entry_t * pel_head_ptr;
+ H5C_cache_entry_t * pel_tail_ptr;
+
+ int32_t LRU_list_len;
+ size_t LRU_list_size;
+ H5C_cache_entry_t * LRU_head_ptr;
+ H5C_cache_entry_t * LRU_tail_ptr;
+
+ int32_t cLRU_list_len;
+ size_t cLRU_list_size;
+ H5C_cache_entry_t * cLRU_head_ptr;
+ H5C_cache_entry_t * cLRU_tail_ptr;
+
+ int32_t dLRU_list_len;
+ size_t dLRU_list_size;
+ H5C_cache_entry_t * dLRU_head_ptr;
+ H5C_cache_entry_t * dLRU_tail_ptr;
+
+ hbool_t size_increase_possible;
+ hbool_t flash_size_increase_possible;
+ size_t flash_size_increase_threshold;
+ hbool_t size_decrease_possible;
+ hbool_t resize_enabled;
+ hbool_t cache_full;
+ hbool_t size_decreased;
+ H5C_auto_size_ctl_t resize_ctl;
+
+ int32_t epoch_markers_active;
+ hbool_t epoch_marker_active[H5C__MAX_EPOCH_MARKERS];
+ int32_t epoch_marker_ringbuf[H5C__MAX_EPOCH_MARKERS+1];
+ int32_t epoch_marker_ringbuf_first;
+ int32_t epoch_marker_ringbuf_last;
+ int32_t epoch_marker_ringbuf_size;
+ H5C_cache_entry_t epoch_markers[H5C__MAX_EPOCH_MARKERS];
+
+ int64_t cache_hits;
+ int64_t cache_accesses;
+
+#if H5C_COLLECT_CACHE_STATS
+
+ /* stats fields */
+ int64_t hits[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t misses[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t write_protects[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t read_protects[H5C__MAX_NUM_TYPE_IDS + 1];
+ int32_t max_read_protects[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t insertions[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t pinned_insertions[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t clears[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t flushes[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t evictions[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t moves[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t entry_flush_moves[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t cache_flush_moves[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t pins[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t unpins[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t dirty_pins[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t pinned_flushes[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t pinned_clears[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t size_increases[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t size_decreases[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t entry_flush_size_changes[H5C__MAX_NUM_TYPE_IDS + 1];
+ int64_t cache_flush_size_changes[H5C__MAX_NUM_TYPE_IDS + 1];
+
+ int64_t total_ht_insertions;
+ int64_t total_ht_deletions;
+ int64_t successful_ht_searches;
+ int64_t total_successful_ht_search_depth;
+ int64_t failed_ht_searches;
+ int64_t total_failed_ht_search_depth;
+
+ int32_t max_index_len;
+ size_t max_index_size;
+ size_t max_clean_index_size;
+ size_t max_dirty_index_size;
+
+ int32_t max_slist_len;
+ size_t max_slist_size;
+
+ int32_t max_pl_len;
+ size_t max_pl_size;
+
+ int32_t max_pel_len;
+ size_t max_pel_size;
+
+ int64_t calls_to_msic;
+ int64_t total_entries_skipped_in_msic;
+ int64_t total_entries_scanned_in_msic;
+ int32_t max_entries_skipped_in_msic;
+ int32_t max_entries_scanned_in_msic;
+ int64_t entries_scanned_to_make_space;
+
+#if H5C_COLLECT_CACHE_ENTRY_STATS
+
+ int32_t max_accesses[H5C__MAX_NUM_TYPE_IDS + 1];
+ int32_t min_accesses[H5C__MAX_NUM_TYPE_IDS + 1];
+ int32_t max_clears[H5C__MAX_NUM_TYPE_IDS + 1];
+ int32_t max_flushes[H5C__MAX_NUM_TYPE_IDS + 1];
+ size_t max_size[H5C__MAX_NUM_TYPE_IDS + 1];
+ int32_t max_pins[H5C__MAX_NUM_TYPE_IDS + 1];
+
+#endif /* H5C_COLLECT_CACHE_ENTRY_STATS */
+
+#endif /* H5C_COLLECT_CACHE_STATS */
+
+ char prefix[H5C__PREFIX_LEN];
+};
+
+
+/****************************************************************************/
+/***************************** Macro Definitions ****************************/
+/****************************************************************************/
+
+/****************************************************************************
+ *
+ * We maintain doubly linked lists of instances of H5C_cache_entry_t for a
+ * variety of reasons -- protected list, LRU list, and the clean and dirty
+ * LRU lists at present. The following macros support linking and unlinking
+ * of instances of H5C_cache_entry_t by both their regular and auxilary next
+ * and previous pointers.
+ *
+ * The size and length fields are also maintained.
+ *
+ * Note that the relevant pair of prev and next pointers are presumed to be
+ * NULL on entry in the insertion macros.
+ *
+ * Finally, observe that the sanity checking macros evaluate to the empty
+ * string when H5C_DO_SANITY_CHECKS is FALSE. They also contain calls
+ * to the HGOTO_ERROR macro, which may not be appropriate in all cases.
+ * If so, we will need versions of the insertion and deletion macros which
+ * do not reference the sanity checking macros.
+ * JRM - 5/5/04
+ *
+ * Changes:
+ *
+ * - Removed the line:
+ *
+ * ( ( (Size) == (entry_ptr)->size ) && ( (len) != 1 ) ) ||
+ *
+ * from the H5C__DLL_PRE_REMOVE_SC macro. With the addition of the
+ * epoch markers used in the age out based cache size reduction algorithm,
+ * this invarient need not hold, as the epoch markers are of size 0.
+ *
+ * One could argue that I should have given the epoch markers a positive
+ * size, but this would break the index_size = LRU_list_size + pl_size
+ * + pel_size invarient.
+ *
+ * Alternatively, I could pass the current decr_mode in to the macro,
+ * and just skip the check whenever epoch markers may be in use.
+ *
+ * However, any size errors should be caught when the cache is flushed
+ * and destroyed. Until we are tracking such an error, this should be
+ * good enough.
+ * JRM - 12/9/04
+ *
+ *
+ * - In the H5C__DLL_PRE_INSERT_SC macro, replaced the lines:
+ *
+ * ( ( (len) == 1 ) &&
+ * ( ( (head_ptr) != (tail_ptr) ) || ( (Size) <= 0 ) ||
+ * ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) )
+ * )
+ * ) ||
+ *
+ * with:
+ *
+ * ( ( (len) == 1 ) &&
+ * ( ( (head_ptr) != (tail_ptr) ) ||
+ * ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) )
+ * )
+ * ) ||
+ *
+ * Epoch markers have size 0, so we can now have a non-empty list with
+ * zero size. Hence the "( (Size) <= 0 )" clause cause false failures
+ * in the sanity check. Since "Size" is typically a size_t, it can't
+ * take on negative values, and thus the revised clause "( (Size) < 0 )"
+ * caused compiler warnings.
+ * JRM - 12/22/04
+ *
+ * - In the H5C__DLL_SC macro, replaced the lines:
+ *
+ * ( ( (len) == 1 ) &&
+ * ( ( (head_ptr) != (tail_ptr) ) || ( (cache_ptr)->size <= 0 ) ||
+ * ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) )
+ * )
+ * ) ||
+ *
+ * with
+ *
+ * ( ( (len) == 1 ) &&
+ * ( ( (head_ptr) != (tail_ptr) ) ||
+ * ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) )
+ * )
+ * ) ||
+ *
+ * Epoch markers have size 0, so we can now have a non-empty list with
+ * zero size. Hence the "( (Size) <= 0 )" clause cause false failures
+ * in the sanity check. Since "Size" is typically a size_t, it can't
+ * take on negative values, and thus the revised clause "( (Size) < 0 )"
+ * caused compiler warnings.
+ * JRM - 1/10/05
+ *
+ * - Added the H5C__DLL_UPDATE_FOR_SIZE_CHANGE macro and the associated
+ * sanity checking macros. These macro are used to update the size of
+ * a DLL when one of its entries changes size.
+ *
+ * JRM - 9/8/05
+ *
+ ****************************************************************************/
+
+#if H5C_DO_SANITY_CHECKS
+
+#define H5C__DLL_PRE_REMOVE_SC(entry_ptr, head_ptr, tail_ptr, len, Size, fv) \
+if ( ( (head_ptr) == NULL ) || \
+ ( (tail_ptr) == NULL ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (len) <= 0 ) || \
+ ( (Size) < (entry_ptr)->size ) || \
+ ( ( (entry_ptr)->prev == NULL ) && ( (head_ptr) != (entry_ptr) ) ) || \
+ ( ( (entry_ptr)->next == NULL ) && ( (tail_ptr) != (entry_ptr) ) ) || \
+ ( ( (len) == 1 ) && \
+ ( ! ( ( (head_ptr) == (entry_ptr) ) && \
+ ( (tail_ptr) == (entry_ptr) ) && \
+ ( (entry_ptr)->next == NULL ) && \
+ ( (entry_ptr)->prev == NULL ) && \
+ ( (Size) == (entry_ptr)->size ) \
+ ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "DLL pre remove SC failed") \
+}
+
+#define H5C__DLL_SC(head_ptr, tail_ptr, len, Size, fv) \
+if ( ( ( ( (head_ptr) == NULL ) || ( (tail_ptr) == NULL ) ) && \
+ ( (head_ptr) != (tail_ptr) ) \
+ ) || \
+ ( (len) < 0 ) || \
+ ( (Size) < 0 ) || \
+ ( ( (len) == 1 ) && \
+ ( ( (head_ptr) != (tail_ptr) ) || \
+ ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) ) \
+ ) \
+ ) || \
+ ( ( (len) >= 1 ) && \
+ ( ( (head_ptr) == NULL ) || ( (head_ptr)->prev != NULL ) || \
+ ( (tail_ptr) == NULL ) || ( (tail_ptr)->next != NULL ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "DLL sanity check failed") \
+}
+
+#define H5C__DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, fv) \
+if ( ( (entry_ptr) == NULL ) || \
+ ( (entry_ptr)->next != NULL ) || \
+ ( (entry_ptr)->prev != NULL ) || \
+ ( ( ( (head_ptr) == NULL ) || ( (tail_ptr) == NULL ) ) && \
+ ( (head_ptr) != (tail_ptr) ) \
+ ) || \
+ ( (len) < 0 ) || \
+ ( ( (len) == 1 ) && \
+ ( ( (head_ptr) != (tail_ptr) ) || \
+ ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) ) \
+ ) \
+ ) || \
+ ( ( (len) >= 1 ) && \
+ ( ( (head_ptr) == NULL ) || ( (head_ptr)->prev != NULL ) || \
+ ( (tail_ptr) == NULL ) || ( (tail_ptr)->next != NULL ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "DLL pre insert SC failed") \
+}
+
+#define H5C__DLL_PRE_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size) \
+if ( ( (dll_len) <= 0 ) || \
+ ( (dll_size) <= 0 ) || \
+ ( (old_size) <= 0 ) || \
+ ( (old_size) > (dll_size) ) || \
+ ( (new_size) <= 0 ) || \
+ ( ( (dll_len) == 1 ) && ( (old_size) != (dll_size) ) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "DLL pre size update SC failed") \
+}
+
+#define H5C__DLL_POST_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size) \
+if ( ( (new_size) > (dll_size) ) || \
+ ( ( (dll_len) == 1 ) && ( (new_size) != (dll_size) ) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "DLL post size update SC failed") \
+}
+
+#else /* H5C_DO_SANITY_CHECKS */
+
+#define H5C__DLL_PRE_REMOVE_SC(entry_ptr, head_ptr, tail_ptr, len, Size, fv)
+#define H5C__DLL_SC(head_ptr, tail_ptr, len, Size, fv)
+#define H5C__DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, fv)
+#define H5C__DLL_PRE_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size)
+#define H5C__DLL_POST_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size)
+
+#endif /* H5C_DO_SANITY_CHECKS */
+
+
+#define H5C__DLL_APPEND(entry_ptr, head_ptr, tail_ptr, len, Size, fail_val) \
+ H5C__DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fail_val) \
+ if ( (head_ptr) == NULL ) \
+ { \
+ (head_ptr) = (entry_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ else \
+ { \
+ (tail_ptr)->next = (entry_ptr); \
+ (entry_ptr)->prev = (tail_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ (len)++; \
+ (Size) += (entry_ptr)->size;
+
+#define H5C__DLL_PREPEND(entry_ptr, head_ptr, tail_ptr, len, Size, fail_val) \
+ H5C__DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fail_val) \
+ if ( (head_ptr) == NULL ) \
+ { \
+ (head_ptr) = (entry_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ else \
+ { \
+ (head_ptr)->prev = (entry_ptr); \
+ (entry_ptr)->next = (head_ptr); \
+ (head_ptr) = (entry_ptr); \
+ } \
+ (len)++; \
+ (Size) += entry_ptr->size;
+
+#define H5C__DLL_REMOVE(entry_ptr, head_ptr, tail_ptr, len, Size, fail_val) \
+ H5C__DLL_PRE_REMOVE_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fail_val) \
+ { \
+ if ( (head_ptr) == (entry_ptr) ) \
+ { \
+ (head_ptr) = (entry_ptr)->next; \
+ if ( (head_ptr) != NULL ) \
+ { \
+ (head_ptr)->prev = NULL; \
+ } \
+ } \
+ else \
+ { \
+ (entry_ptr)->prev->next = (entry_ptr)->next; \
+ } \
+ if ( (tail_ptr) == (entry_ptr) ) \
+ { \
+ (tail_ptr) = (entry_ptr)->prev; \
+ if ( (tail_ptr) != NULL ) \
+ { \
+ (tail_ptr)->next = NULL; \
+ } \
+ } \
+ else \
+ { \
+ (entry_ptr)->next->prev = (entry_ptr)->prev; \
+ } \
+ entry_ptr->next = NULL; \
+ entry_ptr->prev = NULL; \
+ (len)--; \
+ (Size) -= entry_ptr->size; \
+ }
+
+#define H5C__DLL_UPDATE_FOR_SIZE_CHANGE(dll_len, dll_size, old_size, new_size) \
+ H5C__DLL_PRE_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size) \
+ (dll_size) -= (old_size); \
+ (dll_size) += (new_size); \
+ H5C__DLL_POST_SIZE_UPDATE_SC(dll_len, dll_size, old_size, new_size)
+
+#if H5C_DO_SANITY_CHECKS
+
+#define H5C__AUX_DLL_PRE_REMOVE_SC(entry_ptr, hd_ptr, tail_ptr, len, Size, fv) \
+if ( ( (hd_ptr) == NULL ) || \
+ ( (tail_ptr) == NULL ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (len) <= 0 ) || \
+ ( (Size) < (entry_ptr)->size ) || \
+ ( ( (Size) == (entry_ptr)->size ) && ( ! ( (len) == 1 ) ) ) || \
+ ( ( (entry_ptr)->aux_prev == NULL ) && ( (hd_ptr) != (entry_ptr) ) ) || \
+ ( ( (entry_ptr)->aux_next == NULL ) && ( (tail_ptr) != (entry_ptr) ) ) || \
+ ( ( (len) == 1 ) && \
+ ( ! ( ( (hd_ptr) == (entry_ptr) ) && ( (tail_ptr) == (entry_ptr) ) && \
+ ( (entry_ptr)->aux_next == NULL ) && \
+ ( (entry_ptr)->aux_prev == NULL ) && \
+ ( (Size) == (entry_ptr)->size ) \
+ ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "aux DLL pre remove SC failed") \
+}
+
+#define H5C__AUX_DLL_SC(head_ptr, tail_ptr, len, Size, fv) \
+if ( ( ( ( (head_ptr) == NULL ) || ( (tail_ptr) == NULL ) ) && \
+ ( (head_ptr) != (tail_ptr) ) \
+ ) || \
+ ( (len) < 0 ) || \
+ ( (Size) < 0 ) || \
+ ( ( (len) == 1 ) && \
+ ( ( (head_ptr) != (tail_ptr) ) || ( (Size) <= 0 ) || \
+ ( (head_ptr) == NULL ) || ( (head_ptr)->size != (Size) ) \
+ ) \
+ ) || \
+ ( ( (len) >= 1 ) && \
+ ( ( (head_ptr) == NULL ) || ( (head_ptr)->aux_prev != NULL ) || \
+ ( (tail_ptr) == NULL ) || ( (tail_ptr)->aux_next != NULL ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "AUX DLL sanity check failed") \
+}
+
+#define H5C__AUX_DLL_PRE_INSERT_SC(entry_ptr, hd_ptr, tail_ptr, len, Size, fv) \
+if ( ( (entry_ptr) == NULL ) || \
+ ( (entry_ptr)->aux_next != NULL ) || \
+ ( (entry_ptr)->aux_prev != NULL ) || \
+ ( ( ( (hd_ptr) == NULL ) || ( (tail_ptr) == NULL ) ) && \
+ ( (hd_ptr) != (tail_ptr) ) \
+ ) || \
+ ( (len) < 0 ) || \
+ ( ( (len) == 1 ) && \
+ ( ( (hd_ptr) != (tail_ptr) ) || ( (Size) <= 0 ) || \
+ ( (hd_ptr) == NULL ) || ( (hd_ptr)->size != (Size) ) \
+ ) \
+ ) || \
+ ( ( (len) >= 1 ) && \
+ ( ( (hd_ptr) == NULL ) || ( (hd_ptr)->aux_prev != NULL ) || \
+ ( (tail_ptr) == NULL ) || ( (tail_ptr)->aux_next != NULL ) \
+ ) \
+ ) \
+ ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, (fv), "AUX DLL pre insert SC failed") \
+}
+
+#else /* H5C_DO_SANITY_CHECKS */
+
+#define H5C__AUX_DLL_PRE_REMOVE_SC(entry_ptr, hd_ptr, tail_ptr, len, Size, fv)
+#define H5C__AUX_DLL_SC(head_ptr, tail_ptr, len, Size, fv)
+#define H5C__AUX_DLL_PRE_INSERT_SC(entry_ptr, hd_ptr, tail_ptr, len, Size, fv)
+
+#endif /* H5C_DO_SANITY_CHECKS */
+
+
+#define H5C__AUX_DLL_APPEND(entry_ptr, head_ptr, tail_ptr, len, Size, fail_val)\
+ H5C__AUX_DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fail_val) \
+ if ( (head_ptr) == NULL ) \
+ { \
+ (head_ptr) = (entry_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ else \
+ { \
+ (tail_ptr)->aux_next = (entry_ptr); \
+ (entry_ptr)->aux_prev = (tail_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ (len)++; \
+ (Size) += entry_ptr->size;
+
+#define H5C__AUX_DLL_PREPEND(entry_ptr, head_ptr, tail_ptr, len, Size, fv) \
+ H5C__AUX_DLL_PRE_INSERT_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fv) \
+ if ( (head_ptr) == NULL ) \
+ { \
+ (head_ptr) = (entry_ptr); \
+ (tail_ptr) = (entry_ptr); \
+ } \
+ else \
+ { \
+ (head_ptr)->aux_prev = (entry_ptr); \
+ (entry_ptr)->aux_next = (head_ptr); \
+ (head_ptr) = (entry_ptr); \
+ } \
+ (len)++; \
+ (Size) += entry_ptr->size;
+
+#define H5C__AUX_DLL_REMOVE(entry_ptr, head_ptr, tail_ptr, len, Size, fv) \
+ H5C__AUX_DLL_PRE_REMOVE_SC(entry_ptr, head_ptr, tail_ptr, len, Size, \
+ fv) \
+ { \
+ if ( (head_ptr) == (entry_ptr) ) \
+ { \
+ (head_ptr) = (entry_ptr)->aux_next; \
+ if ( (head_ptr) != NULL ) \
+ { \
+ (head_ptr)->aux_prev = NULL; \
+ } \
+ } \
+ else \
+ { \
+ (entry_ptr)->aux_prev->aux_next = (entry_ptr)->aux_next; \
+ } \
+ if ( (tail_ptr) == (entry_ptr) ) \
+ { \
+ (tail_ptr) = (entry_ptr)->aux_prev; \
+ if ( (tail_ptr) != NULL ) \
+ { \
+ (tail_ptr)->aux_next = NULL; \
+ } \
+ } \
+ else \
+ { \
+ (entry_ptr)->aux_next->aux_prev = (entry_ptr)->aux_prev; \
+ } \
+ entry_ptr->aux_next = NULL; \
+ entry_ptr->aux_prev = NULL; \
+ (len)--; \
+ (Size) -= entry_ptr->size; \
+ }
+
+
+/***********************************************************************
+ *
+ * Stats collection macros
+ *
+ * The following macros must handle stats collection when this collection
+ * is enabled, and evaluate to the empty string when it is not.
+ *
+ * The sole exception to this rule is
+ * H5C__UPDATE_CACHE_HIT_RATE_STATS(), which is always active as
+ * the cache hit rate stats are always collected and available.
+ *
+ * Changes:
+ *
+ * JRM -- 3/21/06
+ * Added / updated macros for pinned entry related stats.
+ *
+ * JRM -- 8/9/06
+ * More pinned entry stats related updates.
+ *
+ * JRM -- 3/31/07
+ * Updated H5C__UPDATE_STATS_FOR_PROTECT() to keep stats on
+ * read and write protects.
+ *
+ * MAM -- 1/15/09
+ * Created H5C__UPDATE_MAX_INDEX_SIZE_STATS to contain
+ * common code within macros that update the maximum
+ * index, clean_index, and dirty_index statistics fields.
+ *
+ ***********************************************************************/
+
+#define H5C__UPDATE_CACHE_HIT_RATE_STATS(cache_ptr, hit) \
+ (cache_ptr->cache_accesses)++; \
+ if ( hit ) { \
+ (cache_ptr->cache_hits)++; \
+ } \
+
+#if H5C_COLLECT_CACHE_STATS
+
+#define H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->index_size > (cache_ptr)->max_index_size ) \
+ (cache_ptr)->max_index_size = (cache_ptr)->index_size; \
+ if ( (cache_ptr)->clean_index_size > \
+ (cache_ptr)->max_clean_index_size ) \
+ (cache_ptr)->max_clean_index_size = \
+ (cache_ptr)->clean_index_size; \
+ if ( (cache_ptr)->dirty_index_size > \
+ (cache_ptr)->max_dirty_index_size ) \
+ (cache_ptr)->max_dirty_index_size = \
+ (cache_ptr)->dirty_index_size;
+
+#define H5C__UPDATE_STATS_FOR_DIRTY_PIN(cache_ptr, entry_ptr) \
+ (((cache_ptr)->dirty_pins)[(entry_ptr)->type->id])++;
+
+#define H5C__UPDATE_STATS_FOR_UNPROTECT(cache_ptr) \
+ if ( (cache_ptr)->slist_len > (cache_ptr)->max_slist_len ) \
+ (cache_ptr)->max_slist_len = (cache_ptr)->slist_len; \
+ if ( (cache_ptr)->slist_size > (cache_ptr)->max_slist_size ) \
+ (cache_ptr)->max_slist_size = (cache_ptr)->slist_size; \
+ if ( (cache_ptr)->pel_len > (cache_ptr)->max_pel_len ) \
+ (cache_ptr)->max_pel_len = (cache_ptr)->pel_len; \
+ if ( (cache_ptr)->pel_size > (cache_ptr)->max_pel_size ) \
+ (cache_ptr)->max_pel_size = (cache_ptr)->pel_size;
+
+#define H5C__UPDATE_STATS_FOR_MOVE(cache_ptr, entry_ptr) \
+ if ( cache_ptr->flush_in_progress ) { \
+ ((cache_ptr)->cache_flush_moves[(entry_ptr)->type->id])++; \
+ } \
+ if ( entry_ptr->flush_in_progress ) { \
+ ((cache_ptr)->entry_flush_moves[(entry_ptr)->type->id])++; \
+ } \
+ (((cache_ptr)->moves)[(entry_ptr)->type->id])++;
+
+#define H5C__UPDATE_STATS_FOR_ENTRY_SIZE_CHANGE(cache_ptr, entry_ptr, new_size)\
+ if ( cache_ptr->flush_in_progress ) { \
+ ((cache_ptr)->cache_flush_size_changes[(entry_ptr)->type->id])++; \
+ } \
+ if ( entry_ptr->flush_in_progress ) { \
+ ((cache_ptr)->entry_flush_size_changes[(entry_ptr)->type->id])++; \
+ } \
+ if ( (entry_ptr)->size < (new_size) ) { \
+ ((cache_ptr)->size_increases[(entry_ptr)->type->id])++; \
+ H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->slist_size > (cache_ptr)->max_slist_size ) \
+ (cache_ptr)->max_slist_size = (cache_ptr)->slist_size; \
+ if ( (cache_ptr)->pl_size > (cache_ptr)->max_pl_size ) \
+ (cache_ptr)->max_pl_size = (cache_ptr)->pl_size; \
+ } else if ( (entry_ptr)->size > (new_size) ) { \
+ ((cache_ptr)->size_decreases[(entry_ptr)->type->id])++; \
+ }
+
+#define H5C__UPDATE_STATS_FOR_HT_INSERTION(cache_ptr) \
+ (cache_ptr)->total_ht_insertions++;
+
+#define H5C__UPDATE_STATS_FOR_HT_DELETION(cache_ptr) \
+ (cache_ptr)->total_ht_deletions++;
+
+#define H5C__UPDATE_STATS_FOR_HT_SEARCH(cache_ptr, success, depth) \
+ if ( success ) { \
+ (cache_ptr)->successful_ht_searches++; \
+ (cache_ptr)->total_successful_ht_search_depth += depth; \
+ } else { \
+ (cache_ptr)->failed_ht_searches++; \
+ (cache_ptr)->total_failed_ht_search_depth += depth; \
+ }
+
+#define H5C__UPDATE_STATS_FOR_UNPIN(cache_ptr, entry_ptr) \
+ ((cache_ptr)->unpins)[(entry_ptr)->type->id]++;
+
+#if H5C_COLLECT_CACHE_ENTRY_STATS
+
+#define H5C__RESET_CACHE_ENTRY_STATS(entry_ptr) \
+ (entry_ptr)->accesses = 0; \
+ (entry_ptr)->clears = 0; \
+ (entry_ptr)->flushes = 0; \
+ (entry_ptr)->pins = 0;
+
+#define H5C__UPDATE_STATS_FOR_CLEAR(cache_ptr, entry_ptr) \
+ (((cache_ptr)->clears)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_clears)[(entry_ptr)->type->id])++; \
+ } \
+ ((entry_ptr)->clears)++;
+
+#define H5C__UPDATE_STATS_FOR_FLUSH(cache_ptr, entry_ptr) \
+ (((cache_ptr)->flushes)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_flushes)[(entry_ptr)->type->id])++; \
+ } \
+ ((entry_ptr)->flushes)++;
+
+#define H5C__UPDATE_STATS_FOR_EVICTION(cache_ptr, entry_ptr) \
+ (((cache_ptr)->evictions)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->accesses > \
+ ((cache_ptr)->max_accesses)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_accesses)[(entry_ptr)->type->id] \
+ = (entry_ptr)->accesses; \
+ } \
+ if ( (entry_ptr)->accesses < \
+ ((cache_ptr)->min_accesses)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->min_accesses)[(entry_ptr)->type->id] \
+ = (entry_ptr)->accesses; \
+ } \
+ if ( (entry_ptr)->clears > \
+ ((cache_ptr)->max_clears)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_clears)[(entry_ptr)->type->id] \
+ = (entry_ptr)->clears; \
+ } \
+ if ( (entry_ptr)->flushes > \
+ ((cache_ptr)->max_flushes)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_flushes)[(entry_ptr)->type->id] \
+ = (entry_ptr)->flushes; \
+ } \
+ if ( (entry_ptr)->size > \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] \
+ = (entry_ptr)->size; \
+ } \
+ if ( (entry_ptr)->pins > \
+ ((cache_ptr)->max_pins)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_pins)[(entry_ptr)->type->id] \
+ = (entry_ptr)->pins; \
+ }
+
+#define H5C__UPDATE_STATS_FOR_INSERTION(cache_ptr, entry_ptr) \
+ (((cache_ptr)->insertions)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_insertions)[(entry_ptr)->type->id])++; \
+ ((cache_ptr)->pins)[(entry_ptr)->type->id]++; \
+ (entry_ptr)->pins++; \
+ if ( (cache_ptr)->pel_len > (cache_ptr)->max_pel_len ) \
+ (cache_ptr)->max_pel_len = (cache_ptr)->pel_len; \
+ if ( (cache_ptr)->pel_size > (cache_ptr)->max_pel_size ) \
+ (cache_ptr)->max_pel_size = (cache_ptr)->pel_size; \
+ } \
+ if ( (cache_ptr)->index_len > (cache_ptr)->max_index_len ) \
+ (cache_ptr)->max_index_len = (cache_ptr)->index_len; \
+ H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->slist_len > (cache_ptr)->max_slist_len ) \
+ (cache_ptr)->max_slist_len = (cache_ptr)->slist_len; \
+ if ( (cache_ptr)->slist_size > (cache_ptr)->max_slist_size ) \
+ (cache_ptr)->max_slist_size = (cache_ptr)->slist_size; \
+ if ( (entry_ptr)->size > \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] \
+ = (entry_ptr)->size; \
+ }
+
+#define H5C__UPDATE_STATS_FOR_PROTECT(cache_ptr, entry_ptr, hit) \
+ if ( hit ) \
+ ((cache_ptr)->hits)[(entry_ptr)->type->id]++; \
+ else \
+ ((cache_ptr)->misses)[(entry_ptr)->type->id]++; \
+ if ( ! ((entry_ptr)->is_read_only) ) { \
+ ((cache_ptr)->write_protects)[(entry_ptr)->type->id]++; \
+ } else { \
+ ((cache_ptr)->read_protects)[(entry_ptr)->type->id]++; \
+ if ( ((entry_ptr)->ro_ref_count) > \
+ ((cache_ptr)->max_read_protects)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_read_protects)[(entry_ptr)->type->id] = \
+ ((entry_ptr)->ro_ref_count); \
+ } \
+ } \
+ if ( (cache_ptr)->index_len > (cache_ptr)->max_index_len ) \
+ (cache_ptr)->max_index_len = (cache_ptr)->index_len; \
+ H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->pl_len > (cache_ptr)->max_pl_len ) \
+ (cache_ptr)->max_pl_len = (cache_ptr)->pl_len; \
+ if ( (cache_ptr)->pl_size > (cache_ptr)->max_pl_size ) \
+ (cache_ptr)->max_pl_size = (cache_ptr)->pl_size; \
+ if ( (entry_ptr)->size > \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_size)[(entry_ptr)->type->id] \
+ = (entry_ptr)->size; \
+ } \
+ ((entry_ptr)->accesses)++;
+
+#define H5C__UPDATE_STATS_FOR_PIN(cache_ptr, entry_ptr) \
+ ((cache_ptr)->pins)[(entry_ptr)->type->id]++; \
+ (entry_ptr)->pins++; \
+ if ( (cache_ptr)->pel_len > (cache_ptr)->max_pel_len ) \
+ (cache_ptr)->max_pel_len = (cache_ptr)->pel_len; \
+ if ( (cache_ptr)->pel_size > (cache_ptr)->max_pel_size ) \
+ (cache_ptr)->max_pel_size = (cache_ptr)->pel_size;
+
+#else /* H5C_COLLECT_CACHE_ENTRY_STATS */
+
+#define H5C__RESET_CACHE_ENTRY_STATS(entry_ptr)
+
+#define H5C__UPDATE_STATS_FOR_CLEAR(cache_ptr, entry_ptr) \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_clears)[(entry_ptr)->type->id])++; \
+ } \
+ (((cache_ptr)->clears)[(entry_ptr)->type->id])++;
+
+#define H5C__UPDATE_STATS_FOR_FLUSH(cache_ptr, entry_ptr) \
+ (((cache_ptr)->flushes)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_flushes)[(entry_ptr)->type->id])++; \
+ }
+
+#define H5C__UPDATE_STATS_FOR_EVICTION(cache_ptr, entry_ptr) \
+ (((cache_ptr)->evictions)[(entry_ptr)->type->id])++;
+
+#define H5C__UPDATE_STATS_FOR_INSERTION(cache_ptr, entry_ptr) \
+ (((cache_ptr)->insertions)[(entry_ptr)->type->id])++; \
+ if ( (entry_ptr)->is_pinned ) { \
+ (((cache_ptr)->pinned_insertions)[(entry_ptr)->type->id])++; \
+ ((cache_ptr)->pins)[(entry_ptr)->type->id]++; \
+ if ( (cache_ptr)->pel_len > (cache_ptr)->max_pel_len ) \
+ (cache_ptr)->max_pel_len = (cache_ptr)->pel_len; \
+ if ( (cache_ptr)->pel_size > (cache_ptr)->max_pel_size ) \
+ (cache_ptr)->max_pel_size = (cache_ptr)->pel_size; \
+ } \
+ if ( (cache_ptr)->index_len > (cache_ptr)->max_index_len ) \
+ (cache_ptr)->max_index_len = (cache_ptr)->index_len; \
+ H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->slist_len > (cache_ptr)->max_slist_len ) \
+ (cache_ptr)->max_slist_len = (cache_ptr)->slist_len; \
+ if ( (cache_ptr)->slist_size > (cache_ptr)->max_slist_size ) \
+ (cache_ptr)->max_slist_size = (cache_ptr)->slist_size;
+
+#define H5C__UPDATE_STATS_FOR_PROTECT(cache_ptr, entry_ptr, hit) \
+ if ( hit ) \
+ ((cache_ptr)->hits)[(entry_ptr)->type->id]++; \
+ else \
+ ((cache_ptr)->misses)[(entry_ptr)->type->id]++; \
+ if ( ! ((entry_ptr)->is_read_only) ) { \
+ ((cache_ptr)->write_protects)[(entry_ptr)->type->id]++; \
+ } else { \
+ ((cache_ptr)->read_protects)[(entry_ptr)->type->id]++; \
+ if ( ((entry_ptr)->ro_ref_count) > \
+ ((cache_ptr)->max_read_protects)[(entry_ptr)->type->id] ) { \
+ ((cache_ptr)->max_read_protects)[(entry_ptr)->type->id] = \
+ ((entry_ptr)->ro_ref_count); \
+ } \
+ } \
+ if ( (cache_ptr)->index_len > (cache_ptr)->max_index_len ) \
+ (cache_ptr)->max_index_len = (cache_ptr)->index_len; \
+ H5C__UPDATE_MAX_INDEX_SIZE_STATS(cache_ptr) \
+ if ( (cache_ptr)->pl_len > (cache_ptr)->max_pl_len ) \
+ (cache_ptr)->max_pl_len = (cache_ptr)->pl_len; \
+ if ( (cache_ptr)->pl_size > (cache_ptr)->max_pl_size ) \
+ (cache_ptr)->max_pl_size = (cache_ptr)->pl_size;
+
+#define H5C__UPDATE_STATS_FOR_PIN(cache_ptr, entry_ptr) \
+ ((cache_ptr)->pins)[(entry_ptr)->type->id]++; \
+ if ( (cache_ptr)->pel_len > (cache_ptr)->max_pel_len ) \
+ (cache_ptr)->max_pel_len = (cache_ptr)->pel_len; \
+ if ( (cache_ptr)->pel_size > (cache_ptr)->max_pel_size ) \
+ (cache_ptr)->max_pel_size = (cache_ptr)->pel_size;
+
+#endif /* H5C_COLLECT_CACHE_ENTRY_STATS */
+
+#else /* H5C_COLLECT_CACHE_STATS */
+
+#define H5C__RESET_CACHE_ENTRY_STATS(entry_ptr)
+#define H5C__UPDATE_STATS_FOR_DIRTY_PIN(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_UNPROTECT(cache_ptr)
+#define H5C__UPDATE_STATS_FOR_MOVE(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_ENTRY_SIZE_CHANGE(cache_ptr, entry_ptr, new_size)
+#define H5C__UPDATE_STATS_FOR_HT_INSERTION(cache_ptr)
+#define H5C__UPDATE_STATS_FOR_HT_DELETION(cache_ptr)
+#define H5C__UPDATE_STATS_FOR_HT_SEARCH(cache_ptr, success, depth)
+#define H5C__UPDATE_STATS_FOR_INSERTION(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_CLEAR(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_FLUSH(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_EVICTION(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_PROTECT(cache_ptr, entry_ptr, hit)
+#define H5C__UPDATE_STATS_FOR_PIN(cache_ptr, entry_ptr)
+#define H5C__UPDATE_STATS_FOR_UNPIN(cache_ptr, entry_ptr)
+
+#endif /* H5C_COLLECT_CACHE_STATS */
+
+
+/***********************************************************************
+ *
+ * Hash table access and manipulation macros:
+ *
+ * The following macros handle searches, insertions, and deletion in
+ * the hash table.
+ *
+ * When modifying these macros, remember to modify the similar macros
+ * in tst/cache.c
+ *
+ * Changes:
+ *
+ * - Updated existing index macros and sanity check macros to maintain
+ * the clean_index_size and dirty_index_size fields of H5C_t. Also
+ * added macros to allow us to track entry cleans and dirties.
+ *
+ * JRM -- 11/5/08
+ *
+ ***********************************************************************/
+
+/* H5C__HASH_TABLE_LEN is defined in H5Cpkg.h. It mut be a power of two. */
+
+#define H5C__HASH_MASK ((size_t)(H5C__HASH_TABLE_LEN - 1) << 3)
+
+#define H5C__HASH_FCN(x) (int)(((x) & H5C__HASH_MASK) >> 3)
+
+#if H5C_DO_SANITY_CHECKS
+
+#define H5C__PRE_HT_INSERT_SC(cache_ptr, entry_ptr, fail_val) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( ! H5F_addr_defined((entry_ptr)->addr) ) || \
+ ( (entry_ptr)->ht_next != NULL ) || \
+ ( (entry_ptr)->ht_prev != NULL ) || \
+ ( (entry_ptr)->size <= 0 ) || \
+ ( (k = H5C__HASH_FCN((entry_ptr)->addr)) < 0 ) || \
+ ( k >= H5C__HASH_TABLE_LEN ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + \
+ (cache_ptr)->dirty_index_size) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, fail_val, \
+ "Pre HT insert SC failed") \
+}
+
+#define H5C__PRE_HT_REMOVE_SC(cache_ptr, entry_ptr) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (cache_ptr)->index_len < 1 ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (cache_ptr)->index_size < (entry_ptr)->size ) || \
+ ( ! H5F_addr_defined((entry_ptr)->addr) ) || \
+ ( (entry_ptr)->size <= 0 ) || \
+ ( H5C__HASH_FCN((entry_ptr)->addr) < 0 ) || \
+ ( H5C__HASH_FCN((entry_ptr)->addr) >= H5C__HASH_TABLE_LEN ) || \
+ ( ((cache_ptr)->index)[(H5C__HASH_FCN((entry_ptr)->addr))] \
+ == NULL ) || \
+ ( ( ((cache_ptr)->index)[(H5C__HASH_FCN((entry_ptr)->addr))] \
+ != (entry_ptr) ) && \
+ ( (entry_ptr)->ht_prev == NULL ) ) || \
+ ( ( ((cache_ptr)->index)[(H5C__HASH_FCN((entry_ptr)->addr))] == \
+ (entry_ptr) ) && \
+ ( (entry_ptr)->ht_prev != NULL ) ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + \
+ (cache_ptr)->dirty_index_size) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Pre HT remove SC failed") \
+}
+
+/* (Keep in sync w/H5C_TEST__PRE_HT_SEARCH_SC macro in test/cache_common.h -QAK) */
+#define H5C__PRE_HT_SEARCH_SC(cache_ptr, Addr, fail_val) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) || \
+ ( ! H5F_addr_defined(Addr) ) || \
+ ( H5C__HASH_FCN(Addr) < 0 ) || \
+ ( H5C__HASH_FCN(Addr) >= H5C__HASH_TABLE_LEN ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, fail_val, "Pre HT search SC failed") \
+}
+
+/* (Keep in sync w/H5C_TEST__POST_SUC_HT_SEARCH_SC macro in test/cache_common.h -QAK) */
+#define H5C__POST_SUC_HT_SEARCH_SC(cache_ptr, entry_ptr, Addr, k, fail_val) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (cache_ptr)->index_len < 1 ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (cache_ptr)->index_size < (entry_ptr)->size ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) || \
+ ( H5F_addr_ne((entry_ptr)->addr, (Addr)) ) || \
+ ( (entry_ptr)->size <= 0 ) || \
+ ( ((cache_ptr)->index)[k] == NULL ) || \
+ ( ( ((cache_ptr)->index)[k] != (entry_ptr) ) && \
+ ( (entry_ptr)->ht_prev == NULL ) ) || \
+ ( ( ((cache_ptr)->index)[k] == (entry_ptr) ) && \
+ ( (entry_ptr)->ht_prev != NULL ) ) || \
+ ( ( (entry_ptr)->ht_prev != NULL ) && \
+ ( (entry_ptr)->ht_prev->ht_next != (entry_ptr) ) ) || \
+ ( ( (entry_ptr)->ht_next != NULL ) && \
+ ( (entry_ptr)->ht_next->ht_prev != (entry_ptr) ) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, fail_val, \
+ "Post successful HT search SC failed") \
+}
+
+/* (Keep in sync w/H5C_TEST__POST_HT_SHIFT_TO_FRONT macro in test/cache_common.h -QAK) */
+#define H5C__POST_HT_SHIFT_TO_FRONT(cache_ptr, entry_ptr, k, fail_val) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( ((cache_ptr)->index)[k] != (entry_ptr) ) || \
+ ( (entry_ptr)->ht_prev != NULL ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, fail_val, \
+ "Post HT shift to front SC failed") \
+}
+
+#define H5C__PRE_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr, was_clean) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->index_len <= 0 ) || \
+ ( (cache_ptr)->index_size <= 0 ) || \
+ ( (new_size) <= 0 ) || \
+ ( (old_size) > (cache_ptr)->index_size ) || \
+ ( (new_size) <= 0 ) || \
+ ( ( (cache_ptr)->index_len == 1 ) && \
+ ( (cache_ptr)->index_size != (old_size) ) ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + \
+ (cache_ptr)->dirty_index_size) ) || \
+ ( (entry_ptr == NULL) ) || \
+ ( ( !( was_clean ) || \
+ ( (cache_ptr)->clean_index_size < (old_size) ) ) && \
+ ( ( (was_clean) ) || \
+ ( (cache_ptr)->dirty_index_size < (old_size) ) ) ) || \
+ ( (entry_ptr) == NULL ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Pre HT entry size change SC failed") \
+}
+
+#define H5C__POST_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr) \
+if ( ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->index_len <= 0 ) || \
+ ( (cache_ptr)->index_size <= 0 ) || \
+ ( (new_size) > (cache_ptr)->index_size ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + \
+ (cache_ptr)->dirty_index_size) ) || \
+ ( ( !((entry_ptr)->is_dirty ) || \
+ ( (cache_ptr)->dirty_index_size < (new_size) ) ) && \
+ ( ( ((entry_ptr)->is_dirty) ) || \
+ ( (cache_ptr)->clean_index_size < (new_size) ) ) ) || \
+ ( ( (cache_ptr)->index_len == 1 ) && \
+ ( (cache_ptr)->index_size != (new_size) ) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Post HT entry size change SC failed") \
+}
+
+#define H5C__PRE_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr) \
+if ( \
+ ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (cache_ptr)->index_len <= 0 ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (entry_ptr)->is_dirty != FALSE ) || \
+ ( (cache_ptr)->index_size < (entry_ptr)->size ) || \
+ ( (cache_ptr)->dirty_index_size < (entry_ptr)->size ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Pre HT update for entry clean SC failed") \
+}
+
+#define H5C__PRE_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr) \
+if ( \
+ ( (cache_ptr) == NULL ) || \
+ ( (cache_ptr)->magic != H5C__H5C_T_MAGIC ) || \
+ ( (cache_ptr)->index_len <= 0 ) || \
+ ( (entry_ptr) == NULL ) || \
+ ( (entry_ptr)->is_dirty != TRUE ) || \
+ ( (cache_ptr)->index_size < (entry_ptr)->size ) || \
+ ( (cache_ptr)->clean_index_size < (entry_ptr)->size ) || \
+ ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Pre HT update for entry dirty SC failed") \
+}
+
+#define H5C__POST_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr) \
+if ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Post HT update for entry clean SC failed") \
+}
+
+#define H5C__POST_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr) \
+if ( (cache_ptr)->index_size != \
+ ((cache_ptr)->clean_index_size + (cache_ptr)->dirty_index_size) ) { \
+ HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
+ "Post HT update for entry dirty SC failed") \
+}
+
+#else /* H5C_DO_SANITY_CHECKS */
+
+#define H5C__PRE_HT_INSERT_SC(cache_ptr, entry_ptr, fail_val)
+#define H5C__PRE_HT_REMOVE_SC(cache_ptr, entry_ptr)
+#define H5C__PRE_HT_SEARCH_SC(cache_ptr, Addr, fail_val)
+#define H5C__POST_SUC_HT_SEARCH_SC(cache_ptr, entry_ptr, Addr, k, fail_val)
+#define H5C__POST_HT_SHIFT_TO_FRONT(cache_ptr, entry_ptr, k, fail_val)
+#define H5C__PRE_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr)
+#define H5C__PRE_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr)
+#define H5C__PRE_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr, was_clean)
+#define H5C__POST_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr)
+#define H5C__POST_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr)
+#define H5C__POST_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr)
+
+#endif /* H5C_DO_SANITY_CHECKS */
+
+
+#define H5C__INSERT_IN_INDEX(cache_ptr, entry_ptr, fail_val) \
+{ \
+ int k; \
+ H5C__PRE_HT_INSERT_SC(cache_ptr, entry_ptr, fail_val) \
+ k = H5C__HASH_FCN((entry_ptr)->addr); \
+ if ( ((cache_ptr)->index)[k] == NULL ) \
+ { \
+ ((cache_ptr)->index)[k] = (entry_ptr); \
+ } \
+ else \
+ { \
+ (entry_ptr)->ht_next = ((cache_ptr)->index)[k]; \
+ (entry_ptr)->ht_next->ht_prev = (entry_ptr); \
+ ((cache_ptr)->index)[k] = (entry_ptr); \
+ } \
+ (cache_ptr)->index_len++; \
+ (cache_ptr)->index_size += (entry_ptr)->size; \
+ if ( (entry_ptr)->is_dirty ) { \
+ (cache_ptr)->dirty_index_size += (entry_ptr)->size; \
+ } else { \
+ (cache_ptr)->clean_index_size += (entry_ptr)->size; \
+ } \
+ H5C__UPDATE_STATS_FOR_HT_INSERTION(cache_ptr) \
+}
+
+#define H5C__DELETE_FROM_INDEX(cache_ptr, entry_ptr) \
+{ \
+ int k; \
+ H5C__PRE_HT_REMOVE_SC(cache_ptr, entry_ptr) \
+ k = H5C__HASH_FCN((entry_ptr)->addr); \
+ if ( (entry_ptr)->ht_next ) \
+ { \
+ (entry_ptr)->ht_next->ht_prev = (entry_ptr)->ht_prev; \
+ } \
+ if ( (entry_ptr)->ht_prev ) \
+ { \
+ (entry_ptr)->ht_prev->ht_next = (entry_ptr)->ht_next; \
+ } \
+ if ( ((cache_ptr)->index)[k] == (entry_ptr) ) \
+ { \
+ ((cache_ptr)->index)[k] = (entry_ptr)->ht_next; \
+ } \
+ (entry_ptr)->ht_next = NULL; \
+ (entry_ptr)->ht_prev = NULL; \
+ (cache_ptr)->index_len--; \
+ (cache_ptr)->index_size -= (entry_ptr)->size; \
+ if ( (entry_ptr)->is_dirty ) { \
+ (cache_ptr)->dirty_index_size -= (entry_ptr)->size; \
+ } else { \
+ (cache_ptr)->clean_index_size -= (entry_ptr)->size; \
+ } \
+ H5C__UPDATE_STATS_FOR_HT_DELETION(cache_ptr) \
+}
+
+#define H5C__SEARCH_INDEX(cache_ptr, Addr, entry_ptr, fail_val) \
+{ \
+ int k; \
+ int depth = 0; \
+ H5C__PRE_HT_SEARCH_SC(cache_ptr, Addr, fail_val) \
+ k = H5C__HASH_FCN(Addr); \
+ entry_ptr = ((cache_ptr)->index)[k]; \
+ while ( ( entry_ptr ) && ( H5F_addr_ne(Addr, (entry_ptr)->addr) ) ) \
+ { \
+ (entry_ptr) = (entry_ptr)->ht_next; \
+ (depth)++; \
+ } \
+ if ( entry_ptr ) \
+ { \
+ H5C__POST_SUC_HT_SEARCH_SC(cache_ptr, entry_ptr, Addr, k, fail_val) \
+ if ( entry_ptr != ((cache_ptr)->index)[k] ) \
+ { \
+ if ( (entry_ptr)->ht_next ) \
+ { \
+ (entry_ptr)->ht_next->ht_prev = (entry_ptr)->ht_prev; \
+ } \
+ HDassert( (entry_ptr)->ht_prev != NULL ); \
+ (entry_ptr)->ht_prev->ht_next = (entry_ptr)->ht_next; \
+ ((cache_ptr)->index)[k]->ht_prev = (entry_ptr); \
+ (entry_ptr)->ht_next = ((cache_ptr)->index)[k]; \
+ (entry_ptr)->ht_prev = NULL; \
+ ((cache_ptr)->index)[k] = (entry_ptr); \
+ H5C__POST_HT_SHIFT_TO_FRONT(cache_ptr, entry_ptr, k, fail_val) \
+ } \
+ } \
+ H5C__UPDATE_STATS_FOR_HT_SEARCH(cache_ptr, (entry_ptr != NULL), depth) \
+}
+
+#define H5C__SEARCH_INDEX_NO_STATS(cache_ptr, Addr, entry_ptr, fail_val) \
+{ \
+ int k; \
+ int depth = 0; \
+ H5C__PRE_HT_SEARCH_SC(cache_ptr, Addr, fail_val) \
+ k = H5C__HASH_FCN(Addr); \
+ entry_ptr = ((cache_ptr)->index)[k]; \
+ while ( ( entry_ptr ) && ( H5F_addr_ne(Addr, (entry_ptr)->addr) ) ) \
+ { \
+ (entry_ptr) = (entry_ptr)->ht_next; \
+ (depth)++; \
+ } \
+ if ( entry_ptr ) \
+ { \
+ H5C__POST_SUC_HT_SEARCH_SC(cache_ptr, entry_ptr, Addr, k, fail_val) \
+ if ( entry_ptr != ((cache_ptr)->index)[k] ) \
+ { \
+ if ( (entry_ptr)->ht_next ) \
+ { \
+ (entry_ptr)->ht_next->ht_prev = (entry_ptr)->ht_prev; \
+ } \
+ HDassert( (entry_ptr)->ht_prev != NULL ); \
+ (entry_ptr)->ht_prev->ht_next = (entry_ptr)->ht_next; \
+ ((cache_ptr)->index)[k]->ht_prev = (entry_ptr); \
+ (entry_ptr)->ht_next = ((cache_ptr)->index)[k]; \
+ (entry_ptr)->ht_prev = NULL; \
+ ((cache_ptr)->index)[k] = (entry_ptr); \
+ H5C__POST_HT_SHIFT_TO_FRONT(cache_ptr, entry_ptr, k, fail_val) \
+ } \
+ } \
+}
+
+#define H5C__UPDATE_INDEX_FOR_ENTRY_CLEAN(cache_ptr, entry_ptr) \
+{ \
+ H5C__PRE_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr); \
+ (cache_ptr)->dirty_index_size -= (entry_ptr)->size; \
+ (cache_ptr)->clean_index_size += (entry_ptr)->size; \
+ H5C__POST_HT_UPDATE_FOR_ENTRY_CLEAN_SC(cache_ptr, entry_ptr); \
+}
+
+#define H5C__UPDATE_INDEX_FOR_ENTRY_DIRTY(cache_ptr, entry_ptr) \
+{ \
+ H5C__PRE_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr); \
+ (cache_ptr)->clean_index_size -= (entry_ptr)->size; \
+ (cache_ptr)->dirty_index_size += (entry_ptr)->size; \
+ H5C__POST_HT_UPDATE_FOR_ENTRY_DIRTY_SC(cache_ptr, entry_ptr); \
+}
+
+#define H5C__UPDATE_INDEX_FOR_SIZE_CHANGE(cache_ptr, old_size, new_size, \
+ entry_ptr, was_clean) \
+{ \
+ H5C__PRE_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr, was_clean) \
+ (cache_ptr)->index_size -= (old_size); \
+ (cache_ptr)->index_size += (new_size); \
+ if ( was_clean ) { \
+ (cache_ptr)->clean_index_size -= (old_size); \
+ } else { \
+ (cache_ptr)->dirty_index_size -= (old_size); \
+ } \
+ if ( (entry_ptr)->is_dirty ) { \
+ (cache_ptr)->dirty_index_size += (new_size); \
+ } else { \
+ (cache_ptr)->clean_index_size += (new_size); \
+ } \
+ H5C__POST_HT_ENTRY_SIZE_CHANGE_SC(cache_ptr, old_size, new_size, \
+ entry_ptr) \
+}
+
+
+/**************************************************************************
+ *
+ * Skip list insertion and deletion macros:
+ *
+ * These used to be functions, but I converted them to macros to avoid some
+ * function call overhead.
+ *
+ **************************************************************************/
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__INSERT_ENTRY_IN_SLIST
+ *
+ * Purpose: Insert the specified instance of H5C_cache_entry_t into
+ * the skip list in the specified instance of H5C_t. Update
+ * the associated length and size fields.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/10/04
+ *
+ * Modifications:
+ *
+ * JRM -- 7/21/04
+ * Updated function to set the in_tree flag when inserting
+ * an entry into the tree. Also modified the function to
+ * update the tree size and len fields instead of the similar
+ * index fields.
+ *
+ * All of this is part of the modifications to support the
+ * hash table.
+ *
+ * JRM -- 7/27/04
+ * Converted the function H5C_insert_entry_in_tree() into
+ * the macro H5C__INSERT_ENTRY_IN_TREE in the hopes of
+ * wringing a little more speed out of the cache.
+ *
+ * Note that we don't bother to check if the entry is already
+ * in the tree -- if it is, H5SL_insert() will fail.
+ *
+ * QAK -- 11/27/04
+ * Switched over to using skip list routines.
+ *
+ * JRM -- 6/27/06
+ * Added fail_val parameter.
+ *
+ * JRM -- 8/25/06
+ * Added the H5C_DO_SANITY_CHECKS version of the macro.
+ *
+ * This version maintains the slist_len_increase and
+ * slist_size_increase fields that are used in sanity
+ * checks in the flush routines.
+ *
+ * All this is needed as the fractal heap needs to be
+ * able to dirty, resize and/or move entries during the
+ * flush.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_DO_SANITY_CHECKS
+
+#define H5C__INSERT_ENTRY_IN_SLIST(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ HDassert( H5F_addr_defined((entry_ptr)->addr) ); \
+ HDassert( !((entry_ptr)->in_slist) ); \
+ \
+ if ( H5SL_insert((cache_ptr)->slist_ptr, entry_ptr, &(entry_ptr)->addr) \
+ < 0 ) \
+ HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, (fail_val), \
+ "Can't insert entry in skip list") \
+ \
+ (entry_ptr)->in_slist = TRUE; \
+ (cache_ptr)->slist_len++; \
+ (cache_ptr)->slist_size += (entry_ptr)->size; \
+ (cache_ptr)->slist_len_increase++; \
+ (cache_ptr)->slist_size_increase += (entry_ptr)->size; \
+ \
+ HDassert( (cache_ptr)->slist_len > 0 ); \
+ HDassert( (cache_ptr)->slist_size > 0 ); \
+ \
+} /* H5C__INSERT_ENTRY_IN_SLIST */
+
+#else /* H5C_DO_SANITY_CHECKS */
+
+#define H5C__INSERT_ENTRY_IN_SLIST(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ HDassert( H5F_addr_defined((entry_ptr)->addr) ); \
+ HDassert( !((entry_ptr)->in_slist) ); \
+ \
+ if ( H5SL_insert((cache_ptr)->slist_ptr, entry_ptr, &(entry_ptr)->addr) \
+ < 0 ) \
+ HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, (fail_val), \
+ "Can't insert entry in skip list") \
+ \
+ (entry_ptr)->in_slist = TRUE; \
+ (cache_ptr)->slist_len++; \
+ (cache_ptr)->slist_size += (entry_ptr)->size; \
+ \
+ HDassert( (cache_ptr)->slist_len > 0 ); \
+ HDassert( (cache_ptr)->slist_size > 0 ); \
+ \
+} /* H5C__INSERT_ENTRY_IN_SLIST */
+
+#endif /* H5C_DO_SANITY_CHECKS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Function: H5C__REMOVE_ENTRY_FROM_SLIST
+ *
+ * Purpose: Remove the specified instance of H5C_cache_entry_t from the
+ * index skip list in the specified instance of H5C_t. Update
+ * the associated length and size fields.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/10/04
+ *
+ * Modifications:
+ *
+ * JRM -- 7/21/04
+ * Updated function for the addition of the hash table.
+ *
+ * JRM - 7/27/04
+ * Converted from the function H5C_remove_entry_from_tree()
+ * to the macro H5C__REMOVE_ENTRY_FROM_TREE in the hopes of
+ * wringing a little more performance out of the cache.
+ *
+ * QAK -- 11/27/04
+ * Switched over to using skip list routines.
+ *
+ * JRM -- 3/28/07
+ * Updated sanity checks for the new is_read_only and
+ * ro_ref_count fields in H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define H5C__REMOVE_ENTRY_FROM_SLIST(cache_ptr, entry_ptr) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ HDassert( (entry_ptr)->in_slist ); \
+ HDassert( (cache_ptr)->slist_ptr ); \
+ \
+ if ( H5SL_remove((cache_ptr)->slist_ptr, &(entry_ptr)->addr) \
+ != (entry_ptr) ) \
+ \
+ HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, \
+ "Can't delete entry from skip list.") \
+ \
+ HDassert( (cache_ptr)->slist_len > 0 ); \
+ (cache_ptr)->slist_len--; \
+ HDassert( (cache_ptr)->slist_size >= (entry_ptr)->size ); \
+ (cache_ptr)->slist_size -= (entry_ptr)->size; \
+ (entry_ptr)->in_slist = FALSE; \
+} /* H5C__REMOVE_ENTRY_FROM_SLIST */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Function: H5C__UPDATE_SLIST_FOR_SIZE_CHANGE
+ *
+ * Purpose: Update cache_ptr->slist_size for a change in the size of
+ * and entry in the slist.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 9/07/05
+ *
+ * Modifications:
+ *
+ * JRM -- 8/27/06
+ * Added the H5C_DO_SANITY_CHECKS version of the macro.
+ *
+ * This version maintains the slist_size_increase field
+ * that are used in sanity checks in the flush routines.
+ *
+ * All this is needed as the fractal heap needs to be
+ * able to dirty, resize and/or move entries during the
+ * flush.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_DO_SANITY_CHECKS
+
+#define H5C__UPDATE_SLIST_FOR_SIZE_CHANGE(cache_ptr, old_size, new_size) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (old_size) > 0 ); \
+ HDassert( (new_size) > 0 ); \
+ HDassert( (old_size) <= (cache_ptr)->slist_size ); \
+ HDassert( (cache_ptr)->slist_len > 0 ); \
+ HDassert( ((cache_ptr)->slist_len > 1) || \
+ ( (cache_ptr)->slist_size == (old_size) ) ); \
+ \
+ (cache_ptr)->slist_size -= (old_size); \
+ (cache_ptr)->slist_size += (new_size); \
+ \
+ (cache_ptr)->slist_size_increase -= (int64_t)(old_size); \
+ (cache_ptr)->slist_size_increase += (int64_t)(new_size); \
+ \
+ HDassert( (new_size) <= (cache_ptr)->slist_size ); \
+ HDassert( ( (cache_ptr)->slist_len > 1 ) || \
+ ( (cache_ptr)->slist_size == (new_size) ) ); \
+} /* H5C__REMOVE_ENTRY_FROM_SLIST */
+
+#else /* H5C_DO_SANITY_CHECKS */
+
+#define H5C__UPDATE_SLIST_FOR_SIZE_CHANGE(cache_ptr, old_size, new_size) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (old_size) > 0 ); \
+ HDassert( (new_size) > 0 ); \
+ HDassert( (old_size) <= (cache_ptr)->slist_size ); \
+ HDassert( (cache_ptr)->slist_len > 0 ); \
+ HDassert( ((cache_ptr)->slist_len > 1) || \
+ ( (cache_ptr)->slist_size == (old_size) ) ); \
+ \
+ (cache_ptr)->slist_size -= (old_size); \
+ (cache_ptr)->slist_size += (new_size); \
+ \
+ HDassert( (new_size) <= (cache_ptr)->slist_size ); \
+ HDassert( ( (cache_ptr)->slist_len > 1 ) || \
+ ( (cache_ptr)->slist_size == (new_size) ) ); \
+} /* H5C__REMOVE_ENTRY_FROM_SLIST */
+
+#endif /* H5C_DO_SANITY_CHECKS */
+
+
+/**************************************************************************
+ *
+ * Replacement policy update macros:
+ *
+ * These used to be functions, but I converted them to macros to avoid some
+ * function call overhead.
+ *
+ **************************************************************************/
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__FAKE_RP_FOR_MOST_RECENT_ACCESS
+ *
+ * Purpose: For efficiency, we sometimes change the order of flushes --
+ * but doing so can confuse the replacement policy. This
+ * macro exists to allow us to specify an entry as the
+ * most recently touched so we can repair any such
+ * confusion.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the macro
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 10/13/05
+ *
+ * Modifications:
+ *
+ * JRM -- 3/20/06
+ * Modified macro to ignore pinned entries. Pinned entries
+ * do not appear in the data structures maintained by the
+ * replacement policy code, and thus this macro has nothing
+ * to do if called for such an entry.
+ *
+ * JRM -- 3/28/07
+ * Added sanity checks using the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__FAKE_RP_FOR_MOST_RECENT_ACCESS(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ((entry_ptr)->is_pinned) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the head.\
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* Use the dirty flag to infer whether the entry is on the clean or \
+ * dirty LRU list, and remove it. Then insert it at the head of \
+ * the same LRU list. \
+ * \
+ * At least initially, all entries should be clean. That may \
+ * change, so we may as well deal with both cases now. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ } else { \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__FAKE_RP_FOR_MOST_RECENT_ACCESS */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__FAKE_RP_FOR_MOST_RECENT_ACCESS(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ((entry_ptr)->is_pinned) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the head \
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__FAKE_RP_FOR_MOST_RECENT_ACCESS */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_EVICTION
+ *
+ * Purpose: Update the replacement policy data structures for an
+ * eviction of the specified cache entry.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: Non-negative on success/Negative on failure.
+ *
+ * Programmer: John Mainzer, 5/10/04
+ *
+ * Modifications:
+ *
+ * JRM - 7/27/04
+ * Converted the function H5C_update_rp_for_eviction() to the
+ * macro H5C__UPDATE_RP_FOR_EVICTION in an effort to squeeze
+ * a bit more performance out of the cache.
+ *
+ * At least for the first cut, I am leaving the comments and
+ * white space in the macro. If they cause dificulties with
+ * the pre-processor, I'll have to remove them.
+ *
+ * JRM - 7/28/04
+ * Split macro into two version, one supporting the clean and
+ * dirty LRU lists, and the other not. Yet another attempt
+ * at optimization.
+ *
+ * JRM - 3/20/06
+ * Pinned entries can't be evicted, so this entry should never
+ * be called on a pinned entry. Added assert to verify this.
+ *
+ * JRM -- 3/28/07
+ * Added sanity checks for the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_EVICTION(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( !((entry_ptr)->is_pinned) ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list. */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* If the entry is clean when it is evicted, it should be on the \
+ * clean LRU list, if it was dirty, it should be on the dirty LRU list. \
+ * Remove it from the appropriate list according to the value of the \
+ * dirty flag. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ } else { \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+} /* H5C__UPDATE_RP_FOR_EVICTION */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_EVICTION(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( !((entry_ptr)->is_pinned) ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list. */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+} /* H5C__UPDATE_RP_FOR_EVICTION */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_FLUSH
+ *
+ * Purpose: Update the replacement policy data structures for a flush
+ * of the specified cache entry.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/6/04
+ *
+ * Modifications:
+ *
+ * JRM - 7/27/04
+ * Converted the function H5C_update_rp_for_flush() to the
+ * macro H5C__UPDATE_RP_FOR_FLUSH in an effort to squeeze
+ * a bit more performance out of the cache.
+ *
+ * At least for the first cut, I am leaving the comments and
+ * white space in the macro. If they cause dificulties with
+ * pre-processor, I'll have to remove them.
+ *
+ * JRM - 7/28/04
+ * Split macro into two versions, one supporting the clean and
+ * dirty LRU lists, and the other not. Yet another attempt
+ * at optimization.
+ *
+ * JRM - 3/20/06
+ * While pinned entries can be flushed, they don't reside in
+ * the replacement policy data structures when unprotected.
+ * Thus I modified this macro to do nothing if the entry is
+ * pinned.
+ *
+ * JRM - 3/28/07
+ * Added sanity checks based on the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_FLUSH(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ((entry_ptr)->is_pinned) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the \
+ * head. \
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* since the entry is being flushed or cleared, one would think \
+ * that it must be dirty -- but that need not be the case. Use the \
+ * dirty flag to infer whether the entry is on the clean or dirty \
+ * LRU list, and remove it. Then insert it at the head of the \
+ * clean LRU list. \
+ * \
+ * The function presumes that a dirty entry will be either cleared \
+ * or flushed shortly, so it is OK if we put a dirty entry on the \
+ * clean LRU list. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ } else { \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__UPDATE_RP_FOR_FLUSH */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_FLUSH(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ((entry_ptr)->is_pinned) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the \
+ * head. \
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__UPDATE_RP_FOR_FLUSH */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_INSERTION
+ *
+ * Purpose: Update the replacement policy data structures for an
+ * insertion of the specified cache entry.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/17/04
+ *
+ * Modifications:
+ *
+ * JRM - 7/27/04
+ * Converted the function H5C_update_rp_for_insertion() to the
+ * macro H5C__UPDATE_RP_FOR_INSERTION in an effort to squeeze
+ * a bit more performance out of the cache.
+ *
+ * At least for the first cut, I am leaving the comments and
+ * white space in the macro. If they cause dificulties with
+ * pre-processor, I'll have to remove them.
+ *
+ * JRM - 7/28/04
+ * Split macro into two version, one supporting the clean and
+ * dirty LRU lists, and the other not. Yet another attempt
+ * at optimization.
+ *
+ * JRM - 3/10/06
+ * This macro should never be called on a pinned entry.
+ * Inserted an assert to verify this.
+ *
+ * JRM - 8/9/06
+ * Not any more. We must now allow insertion of pinned
+ * entries. Updated macro to support this.
+ *
+ * JRM - 3/28/07
+ * Added sanity checks using the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_INSERTION(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* insert the entry at the head of the clean or dirty LRU list as \
+ * appropriate. \
+ */ \
+ \
+ if ( entry_ptr->is_dirty ) { \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ } else { \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+}
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_INSERTION(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+}
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_PROTECT
+ *
+ * Purpose: Update the replacement policy data structures for a
+ * protect of the specified cache entry.
+ *
+ * To do this, unlink the specified entry from any data
+ * structures used by the replacement policy, and add the
+ * entry to the protected list.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/17/04
+ *
+ * Modifications:
+ *
+ * JRM - 7/27/04
+ * Converted the function H5C_update_rp_for_protect() to the
+ * macro H5C__UPDATE_RP_FOR_PROTECT in an effort to squeeze
+ * a bit more performance out of the cache.
+ *
+ * At least for the first cut, I am leaving the comments and
+ * white space in the macro. If they cause dificulties with
+ * pre-processor, I'll have to remove them.
+ *
+ * JRM - 7/28/04
+ * Split macro into two version, one supporting the clean and
+ * dirty LRU lists, and the other not. Yet another attempt
+ * at optimization.
+ *
+ * JRM - 3/17/06
+ * Modified macro to attempt to remove pinned entriese from
+ * the pinned entry list instead of from the data structures
+ * maintained by the replacement policy.
+ *
+ * JRM - 3/28/07
+ * Added sanity checks based on the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_PROTECT(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ HDassert( (cache_ptr)->pel_len >= 0 ); \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list. */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* Similarly, remove the entry from the clean or dirty LRU list \
+ * as appropriate. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ \
+ } else { \
+ \
+ H5C__AUX_DLL_REMOVE((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+ \
+ /* Regardless of the replacement policy, or whether the entry is \
+ * pinned, now add the entry to the protected list. \
+ */ \
+ \
+ H5C__DLL_APPEND((entry_ptr), (cache_ptr)->pl_head_ptr, \
+ (cache_ptr)->pl_tail_ptr, \
+ (cache_ptr)->pl_len, \
+ (cache_ptr)->pl_size, (fail_val)) \
+} /* H5C__UPDATE_RP_FOR_PROTECT */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_PROTECT(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ HDassert( (cache_ptr)->pel_len >= 0 ); \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list. */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+ \
+ /* Regardless of the replacement policy, or whether the entry is \
+ * pinned, now add the entry to the protected list. \
+ */ \
+ \
+ H5C__DLL_APPEND((entry_ptr), (cache_ptr)->pl_head_ptr, \
+ (cache_ptr)->pl_tail_ptr, \
+ (cache_ptr)->pl_len, \
+ (cache_ptr)->pl_size, (fail_val)) \
+} /* H5C__UPDATE_RP_FOR_PROTECT */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_MOVE
+ *
+ * Purpose: Update the replacement policy data structures for a
+ * move of the specified cache entry.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/17/04
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_MOVE(cache_ptr, entry_ptr, was_dirty, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ( (entry_ptr)->is_pinned ) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the head. \
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* remove the entry from either the clean or dirty LUR list as \
+ * indicated by the was_dirty parameter \
+ */ \
+ if ( was_dirty ) { \
+ \
+ H5C__AUX_DLL_REMOVE((entry_ptr), \
+ (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, \
+ (fail_val)) \
+ \
+ } else { \
+ \
+ H5C__AUX_DLL_REMOVE((entry_ptr), \
+ (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, \
+ (fail_val)) \
+ } \
+ \
+ /* insert the entry at the head of either the clean or dirty \
+ * LRU list as appropriate. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), \
+ (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, \
+ (fail_val)) \
+ \
+ } else { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), \
+ (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, \
+ (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__UPDATE_RP_FOR_MOVE */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_MOVE(cache_ptr, entry_ptr, was_dirty, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ if ( ! ( (entry_ptr)->is_pinned ) ) { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* remove the entry from the LRU list, and re-insert it at the head. \
+ */ \
+ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__UPDATE_RP_FOR_MOVE */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_SIZE_CHANGE
+ *
+ * Purpose: Update the replacement policy data structures for a
+ * size change of the specified cache entry.
+ *
+ * To do this, determine if the entry is pinned. If it is,
+ * update the size of the pinned entry list.
+ *
+ * If it isn't pinned, the entry must handled by the
+ * replacement policy. Update the appropriate replacement
+ * policy data structures.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 8/23/06
+ *
+ * Modifications:
+ *
+ * JRM -- 3/28/07
+ * Added sanity checks based on the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_SIZE_CHANGE(cache_ptr, entry_ptr, new_size) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ HDassert( new_size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* Update the size of the LRU list */ \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ \
+ /* Similarly, update the size of the clean or dirty LRU list as \
+ * appropriate. At present, the entry must be clean, but that \
+ * could change. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ \
+ } else { \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+ \
+} /* H5C__UPDATE_RP_FOR_SIZE_CHANGE */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_SIZE_CHANGE(cache_ptr, entry_ptr, new_size) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ HDassert( new_size > 0 ); \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* Update the size of the LRU list */ \
+ \
+ H5C__DLL_UPDATE_FOR_SIZE_CHANGE((cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, \
+ (entry_ptr)->size, \
+ (new_size)); \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+ \
+} /* H5C__UPDATE_RP_FOR_SIZE_CHANGE */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_UNPIN
+ *
+ * Purpose: Update the replacement policy data structures for an
+ * unpin of the specified cache entry.
+ *
+ * To do this, unlink the specified entry from the protected
+ * entry list, and re-insert it in the data structures used
+ * by the current replacement policy.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the macro
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 3/22/06
+ *
+ * Modifications:
+ *
+ * JRM -- 3/28/07
+ * Added sanity checks based on the new is_read_only and
+ * ro_ref_count fields of struct H5C_cache_entry_t.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_UNPIN(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->is_pinned); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* Regardless of the replacement policy, remove the entry from the \
+ * pinned entry list. \
+ */ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ HDassert( (cache_ptr)->pel_len >= 0 ); \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* Similarly, insert the entry at the head of either the clean \
+ * or dirty LRU list as appropriate. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), \
+ (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, \
+ (fail_val)) \
+ \
+ } else { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), \
+ (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, \
+ (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ \
+} /* H5C__UPDATE_RP_FOR_UNPIN */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_UNPIN(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( !((entry_ptr)->is_protected) ); \
+ HDassert( !((entry_ptr)->is_read_only) ); \
+ HDassert( ((entry_ptr)->ro_ref_count) == 0 ); \
+ HDassert( (entry_ptr)->is_pinned); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* Regardless of the replacement policy, remove the entry from the \
+ * pinned entry list. \
+ */ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ HDassert( (cache_ptr)->pel_len >= 0 ); \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ \
+} /* H5C__UPDATE_RP_FOR_UNPIN */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Macro: H5C__UPDATE_RP_FOR_UNPROTECT
+ *
+ * Purpose: Update the replacement policy data structures for an
+ * unprotect of the specified cache entry.
+ *
+ * To do this, unlink the specified entry from the protected
+ * list, and re-insert it in the data structures used by the
+ * current replacement policy.
+ *
+ * At present, we only support the modified LRU policy, so
+ * this function deals with that case unconditionally. If
+ * we ever support other replacement policies, the function
+ * should switch on the current policy and act accordingly.
+ *
+ * Return: N/A
+ *
+ * Programmer: John Mainzer, 5/19/04
+ *
+ * Modifications:
+ *
+ * JRM - 7/27/04
+ * Converted the function H5C_update_rp_for_unprotect() to
+ * the macro H5C__UPDATE_RP_FOR_UNPROTECT in an effort to
+ * squeeze a bit more performance out of the cache.
+ *
+ * At least for the first cut, I am leaving the comments and
+ * white space in the macro. If they cause dificulties with
+ * pre-processor, I'll have to remove them.
+ *
+ * JRM - 7/28/04
+ * Split macro into two version, one supporting the clean and
+ * dirty LRU lists, and the other not. Yet another attempt
+ * at optimization.
+ *
+ * JRM - 3/17/06
+ * Modified macro to put pinned entries on the pinned entry
+ * list instead of inserting them in the data structures
+ * maintained by the replacement policy.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#if H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS
+
+#define H5C__UPDATE_RP_FOR_UNPROTECT(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( (entry_ptr)->is_protected); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* Regardless of the replacement policy, remove the entry from the \
+ * protected list. \
+ */ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pl_head_ptr, \
+ (cache_ptr)->pl_tail_ptr, (cache_ptr)->pl_len, \
+ (cache_ptr)->pl_size, (fail_val)) \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* Similarly, insert the entry at the head of either the clean or \
+ * dirty LRU list as appropriate. \
+ */ \
+ \
+ if ( (entry_ptr)->is_dirty ) { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->dLRU_head_ptr, \
+ (cache_ptr)->dLRU_tail_ptr, \
+ (cache_ptr)->dLRU_list_len, \
+ (cache_ptr)->dLRU_list_size, (fail_val)) \
+ \
+ } else { \
+ \
+ H5C__AUX_DLL_PREPEND((entry_ptr), (cache_ptr)->cLRU_head_ptr, \
+ (cache_ptr)->cLRU_tail_ptr, \
+ (cache_ptr)->cLRU_list_len, \
+ (cache_ptr)->cLRU_list_size, (fail_val)) \
+ } \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+ \
+} /* H5C__UPDATE_RP_FOR_UNPROTECT */
+
+#else /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+#define H5C__UPDATE_RP_FOR_UNPROTECT(cache_ptr, entry_ptr, fail_val) \
+{ \
+ HDassert( (cache_ptr) ); \
+ HDassert( (cache_ptr)->magic == H5C__H5C_T_MAGIC ); \
+ HDassert( (entry_ptr) ); \
+ HDassert( (entry_ptr)->is_protected); \
+ HDassert( (entry_ptr)->size > 0 ); \
+ \
+ /* Regardless of the replacement policy, remove the entry from the \
+ * protected list. \
+ */ \
+ H5C__DLL_REMOVE((entry_ptr), (cache_ptr)->pl_head_ptr, \
+ (cache_ptr)->pl_tail_ptr, (cache_ptr)->pl_len, \
+ (cache_ptr)->pl_size, (fail_val)) \
+ \
+ if ( (entry_ptr)->is_pinned ) { \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->pel_head_ptr, \
+ (cache_ptr)->pel_tail_ptr, \
+ (cache_ptr)->pel_len, \
+ (cache_ptr)->pel_size, (fail_val)) \
+ \
+ } else { \
+ \
+ /* modified LRU specific code */ \
+ \
+ /* insert the entry at the head of the LRU list. */ \
+ \
+ H5C__DLL_PREPEND((entry_ptr), (cache_ptr)->LRU_head_ptr, \
+ (cache_ptr)->LRU_tail_ptr, \
+ (cache_ptr)->LRU_list_len, \
+ (cache_ptr)->LRU_list_size, (fail_val)) \
+ \
+ /* End modified LRU specific code. */ \
+ } \
+} /* H5C__UPDATE_RP_FOR_UNPROTECT */
+
+#endif /* H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS */
+
+
+#endif /* _H5Cpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Cpp.h b/Resources/windows-libs/HDF5/include/H5Cpp.h
new file mode 100644
index 0000000000000000000000000000000000000000..044108b51452346cb6d5c8fd6c283672e1a06d80
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Cpp.h
@@ -0,0 +1,59 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Cpp_H
+#define __H5Cpp_H
+
+#include "H5Include.h"
+#include "H5Exception.h"
+#include "H5IdComponent.h"
+#include "H5DataSpace.h"
+#include "H5PropList.h"
+#include "H5Location.h"
+#include "H5Object.h"
+#include "H5AbstractDs.h"
+#include "H5Attribute.h"
+#include "H5DcreatProp.h"
+#include "H5CommonFG.h"
+#include "H5DataType.h"
+#include "H5DxferProp.h"
+#include "H5FaccProp.h"
+#include "H5FcreatProp.h"
+#include "H5AtomType.h"
+#include "H5PredType.h"
+#include "H5EnumType.h"
+#include "H5IntType.h"
+#include "H5FloatType.h"
+#include "H5StrType.h"
+#include "H5CompType.h"
+#include "H5ArrayType.h"
+#include "H5VarLenType.h"
+#include "H5DataSet.h"
+#include "H5Group.h"
+#include "H5File.h"
+#include "H5Library.h"
+
+/* Some C++ compilers do not have offsetof macro; define to bypass the problem
+ - BMR- -EIP- 2007/08/01
+*/
+#ifndef H5_CXX_HAVE_OFFSETOF
+#ifdef HOFFSET
+ #undef HOFFSET
+#endif
+#define HOFFSET(TYPE, MEMBER) ((size_t) &((TYPE *)0)->MEMBER)
+#endif
+
+#endif // __H5Cpp_H
diff --git a/Resources/windows-libs/HDF5/include/H5CppDoc.h b/Resources/windows-libs/HDF5/include/H5CppDoc.h
new file mode 100644
index 0000000000000000000000000000000000000000..8ab253106ca1192c46ec07ff054fd04b21e98d60
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5CppDoc.h
@@ -0,0 +1,91 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5CppDoc_H
+#define __H5CppDoc_H
+
+//-------------------------------------------------------------------------
+// The following section will be used to generate the 'Mainpage'
+// and the 'Examples' for the RM.
+// ------------------------------------------------------------------------
+
+/*! \mainpage notitle
+ *
+ * \section intro_sec Introduction
+ *
+ * The C++ API provides C++ wrappers for the HDF5 C library.
+ * It is assumed that the user has knowledge of the HDF5 file format
+ * and its components. If you are not familiar with HDF5 file format,
+ * and would like to find out more, please refer to the HDF5 documentation
+ * at http://www.hdfgroup.org/HDF5/doc/index.html
+ *
+ * Because the HDF5 library maps very well to
+ * the object oriented design approach, classes in the C++ API can
+ * closely represent the interfaces of the HDF5 APIs, as followed:
+ *
+ * \verbatim
+ HDF5 C APIs C++ Classes
+ ----------- -----------
+ Attribute Interface (H5A) Attribute
+ Datasets Interface (H5D) DataSet
+ Error Interface (H5E) Exception
+ File Interface (H5F) H5File
+ Group Interface (H5G) Group
+ Identifier Interface (H5I) IdComponent
+ Property List Interface (H5P) PropList and subclasses
+ Dataspace Interface (H5S) DataSpace
+ Datatype Interface (H5T) DataType and subclasses
+ \endverbatim
+ * \section install_sec Installation
+ *
+ * Please refer to the file release_docs/INSTALL_Windows.txt
+ * under the top directory for information about installing, building,
+ * and testing the C++ API.
+ *
+ *
+ */
+
+/// This example shows how to create datasets.
+///\par
+///\example create.cpp
+
+///\par
+/// This example shows how to write datasets.
+///\example writedata.cpp
+
+///\par
+/// This example shows how to read datasets.
+///\example readdata.cpp
+
+///\par
+/// This example shows how to create a compound datatype,
+/// write an array which has the compound datatype to the file,
+/// and read back fields' subsets.
+///\example compound.cpp
+
+///\par
+/// This example shows how to work with extendible datasets.
+///\example extend_ds.cpp
+
+///\par
+/// This example shows how to read data from a chunked dataset.
+///\example chunks.cpp
+
+///\par
+/// This example shows how to work with groups.
+///\example h5group.cpp
+
+#endif // __H5CppDoc_H
diff --git a/Resources/windows-libs/HDF5/include/H5Cpublic.h b/Resources/windows-libs/HDF5/include/H5Cpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..39ebbe3760a183d8fdbb3f9d260fe8af851cf64a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Cpublic.h
@@ -0,0 +1,61 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Cpublic.h
+ * June 4, 2005
+ * John Mainzer
+ *
+ * Purpose: Public include file for cache functions.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Cpublic_H
+#define _H5Cpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+enum H5C_cache_incr_mode
+{
+ H5C_incr__off,
+ H5C_incr__threshold
+};
+
+enum H5C_cache_flash_incr_mode
+{
+ H5C_flash_incr__off,
+ H5C_flash_incr__add_space
+};
+
+enum H5C_cache_decr_mode
+{
+ H5C_decr__off,
+ H5C_decr__threshold,
+ H5C_decr__age_out,
+ H5C_decr__age_out_with_threshold
+};
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5DOpublic.h b/Resources/windows-libs/HDF5/include/H5DOpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..774709eb87ab1bcbc001f92d5f61a5d797d9b781
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DOpublic.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5DOpublic_H
+#define _H5DOpublic_H
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Direct chunk write function
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5DOwrite_chunk(hid_t dset_id,
+ hid_t dxpl_id,
+ uint32_t filters,
+ const hsize_t *offset,
+ size_t data_size,
+ const void *buf);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5DSpublic.h b/Resources/windows-libs/HDF5/include/H5DSpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..85923f8cc2b17a06bafdbc1534a08c96c56c2493
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DSpublic.h
@@ -0,0 +1,79 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5DSpublic_H
+#define _H5DSpublic_H
+
+
+
+#define DIMENSION_SCALE_CLASS "DIMENSION_SCALE"
+#define DIMENSION_LIST "DIMENSION_LIST"
+#define REFERENCE_LIST "REFERENCE_LIST"
+#define DIMENSION_LABELS "DIMENSION_LABELS"
+
+
+typedef herr_t (*H5DS_iterate_t)(hid_t dset, unsigned dim, hid_t scale, void *visitor_data);
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_HLDLL herr_t H5DSattach_scale( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+H5_HLDLL herr_t H5DSdetach_scale( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+H5_HLDLL herr_t H5DSset_scale( hid_t dsid,
+ const char *dimname);
+
+H5_HLDLL int H5DSget_num_scales( hid_t did,
+ unsigned int dim);
+
+H5_HLDLL herr_t H5DSset_label( hid_t did,
+ unsigned int idx,
+ const char *label);
+
+H5_HLDLL ssize_t H5DSget_label( hid_t did,
+ unsigned int idx,
+ char *label,
+ size_t size);
+
+H5_HLDLL ssize_t H5DSget_scale_name( hid_t did,
+ char *name,
+ size_t size);
+
+H5_HLDLL htri_t H5DSis_scale( hid_t did);
+
+H5_HLDLL herr_t H5DSiterate_scales( hid_t did,
+ unsigned int dim,
+ int *idx,
+ H5DS_iterate_t visitor,
+ void *visitor_data);
+
+H5_HLDLL htri_t H5DSis_attached( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5DataSet.h b/Resources/windows-libs/HDF5/include/H5DataSet.h
new file mode 100644
index 0000000000000000000000000000000000000000..e264751ecf64d7f2ba81244e658ff5d3987ab058
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DataSet.h
@@ -0,0 +1,132 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5DataSet_H
+#define __H5DataSet_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class DataSet
+ \brief Class DataSet operates on HDF5 datasets.
+
+ An datasets has many characteristics similar to an attribute, thus both
+ Attribute and DataSet are derivatives of AbstractDs. DataSet also
+ inherits from H5Object because a dataset is an HDF5 object.
+*/
+class H5_DLLCPP DataSet : public H5Object, public AbstractDs {
+ public:
+ // Close this dataset.
+ virtual void close();
+
+ // Extends the dataset with unlimited dimension.
+ void extend( const hsize_t* size ) const;
+
+ // Fills a selection in memory with a value
+ void fillMemBuf(const void *fill, const DataType& fill_type, void *buf, const DataType& buf_type, const DataSpace& space) const;
+ void fillMemBuf(const void *fill, DataType& fill_type, void *buf, DataType& buf_type, DataSpace& space); // kept for backward compatibility
+
+ // Fills a selection in memory with zero
+ void fillMemBuf(void *buf, const DataType& buf_type, const DataSpace& space) const;
+ void fillMemBuf(void *buf, DataType& buf_type, DataSpace& space); // kept for backward compatibility
+
+ // Gets the creation property list of this dataset.
+ DSetCreatPropList getCreatePlist() const;
+
+ // Returns the address of this dataset in the file.
+ haddr_t getOffset() const;
+
+ // Gets the dataspace of this dataset.
+ virtual DataSpace getSpace() const;
+
+ // Determines whether space has been allocated for a dataset.
+ void getSpaceStatus(H5D_space_status_t& status) const;
+
+ // Returns the amount of storage size required for this dataset.
+ virtual hsize_t getStorageSize() const;
+
+ // Returns the in memory size of this attribute's data.
+ virtual size_t getInMemDataSize() const;
+
+ // Returns the number of bytes required to store VL data.
+ hsize_t getVlenBufSize(const DataType& type, const DataSpace& space ) const;
+ hsize_t getVlenBufSize(DataType& type, DataSpace& space) const; // kept for backward compatibility
+
+ // Reclaims VL datatype memory buffers.
+ static void vlenReclaim(const DataType& type, const DataSpace& space, const DSetMemXferPropList& xfer_plist, void* buf );
+ static void vlenReclaim(void *buf, const DataType& type, const DataSpace& space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT);
+
+ // Reads the data of this dataset and stores it in the provided buffer.
+ // The memory and file dataspaces and the transferring property list
+ // can be defaults.
+ void read( void* buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT ) const;
+ void read( H5std_string& buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT ) const;
+
+ // Writes the buffered data to this dataset.
+ // The memory and file dataspaces and the transferring property list
+ // can be defaults.
+ void write( const void* buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT ) const;
+ void write( const H5std_string& buf, const DataType& mem_type, const DataSpace& mem_space = DataSpace::ALL, const DataSpace& file_space = DataSpace::ALL, const DSetMemXferPropList& xfer_plist = DSetMemXferPropList::DEFAULT ) const;
+
+ // Iterates the selected elements in the specified dataspace - not implemented in C++ style yet
+ int iterateElems( void* buf, const DataType& type, const DataSpace& space, H5D_operator_t op, void* op_data = NULL );
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("DataSet"); }
+
+ // Creates a dataset by way of dereference.
+ DataSet(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ DataSet(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+
+ // Default constructor.
+ DataSet();
+
+ // Copy constructor.
+ DataSet( const DataSet& original );
+
+ // Creates a copy of an existing DataSet using its id.
+ DataSet(const hid_t existing_id);
+
+ // Gets the dataset id.
+ virtual hid_t getId() const;
+
+ // Destructor: properly terminates access to this dataset.
+ virtual ~DataSet();
+
+ private:
+ hid_t id; // HDF5 dataset id
+
+ // This function contains the common code that is used by
+ // getTypeClass and various API functions getXxxType
+ // defined in AbstractDs for generic datatype and specific
+ // sub-types
+ virtual hid_t p_get_type() const;
+
+ // Reads variable or fixed len strings from this dataset.
+ void p_read_fixed_len(const hid_t mem_type_id, const hid_t mem_space_id, const hid_t file_space_id, const hid_t xfer_plist_id, H5std_string& strg) const;
+ void p_read_variable_len(const hid_t mem_type_id, const hid_t mem_space_id, const hid_t file_space_id, const hid_t xfer_plist_id, H5std_string& strg) const;
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Sets the dataset id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5DataSet_H
diff --git a/Resources/windows-libs/HDF5/include/H5DataSpace.h b/Resources/windows-libs/HDF5/include/H5DataSpace.h
new file mode 100644
index 0000000000000000000000000000000000000000..75d4ff899b5c73df62b86f83e070860874b2526a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DataSpace.h
@@ -0,0 +1,137 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5DataSpace_H
+#define __H5DataSpace_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class DataSpace operates on HDF5 dataspaces.
+class H5_DLLCPP DataSpace : public IdComponent {
+ public:
+ // Default DataSpace objects
+ static const DataSpace ALL;
+
+ // Creates a dataspace object given the space type
+ DataSpace(H5S_class_t type = H5S_SCALAR);
+
+ // Creates a simple dataspace
+ DataSpace(int rank, const hsize_t * dims, const hsize_t * maxdims = NULL);
+
+ // Assignment operator
+ DataSpace& operator=( const DataSpace& rhs );
+
+ // Closes this dataspace.
+ virtual void close();
+
+ // Makes copy of an existing dataspace.
+ void copy(const DataSpace& like_space);
+
+ // Copies the extent of this dataspace.
+ void extentCopy(const DataSpace& dest_space) const;
+ // Kept for backward compatibility only.
+ void extentCopy(DataSpace& dest_space) const;
+
+ // Gets the bounding box containing the current selection.
+ void getSelectBounds( hsize_t* start, hsize_t* end ) const;
+
+ // Gets the number of element points in the current selection.
+ hssize_t getSelectElemNpoints() const;
+
+ // Retrieves the list of element points currently selected.
+ void getSelectElemPointlist( hsize_t startpoint, hsize_t numpoints, hsize_t *buf ) const;
+
+ // Gets the list of hyperslab blocks currently selected.
+ void getSelectHyperBlocklist( hsize_t startblock, hsize_t numblocks, hsize_t *buf ) const;
+
+ // Get number of hyperslab blocks.
+ hssize_t getSelectHyperNblocks() const;
+
+ // Gets the number of elements in this dataspace selection.
+ hssize_t getSelectNpoints() const;
+
+ // Retrieves dataspace dimension size and maximum size.
+ int getSimpleExtentDims( hsize_t *dims, hsize_t *maxdims = NULL ) const;
+
+ // Gets the dimensionality of this dataspace.
+ int getSimpleExtentNdims() const;
+
+ // Gets the number of elements in this dataspace.
+ // 12/05/00 - changed return type to hssize_t from hsize_t - C API
+ hssize_t getSimpleExtentNpoints() const;
+
+ // Gets the current class of this dataspace.
+ H5S_class_t getSimpleExtentType() const;
+
+ // Determines if this dataspace is a simple one.
+ bool isSimple() const;
+
+ // Sets the offset of this simple dataspace.
+ void offsetSimple( const hssize_t* offset ) const;
+
+ // Selects the entire dataspace.
+ void selectAll() const;
+
+ // Selects array elements to be included in the selection for
+ // this dataspace.
+ void selectElements( H5S_seloper_t op, const size_t num_elements, const hsize_t *coord) const;
+
+ // Selects a hyperslab region to add to the current selected region.
+ void selectHyperslab( H5S_seloper_t op, const hsize_t *count, const hsize_t *start, const hsize_t *stride = NULL, const hsize_t *block = NULL ) const;
+
+ // Resets the selection region to include no elements.
+ void selectNone() const;
+
+ // Verifies that the selection is within the extent of the dataspace.
+ bool selectValid() const;
+
+ // Removes the extent from this dataspace.
+ void setExtentNone() const;
+
+ // Sets or resets the size of this dataspace.
+ void setExtentSimple( int rank, const hsize_t *current_size, const hsize_t *maximum_size = NULL ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("DataSpace"); }
+
+ // Creates a DataSpace object using an existing dataspace id.
+ DataSpace(const hid_t space_id);
+
+ // Copy constructor: makes a copy of the original DataSpace object.
+ DataSpace(const DataSpace& original);
+
+ // Gets the dataspace id.
+ virtual hid_t getId() const;
+
+ // Destructor: properly terminates access to this dataspace.
+ virtual ~DataSpace();
+
+ private:
+ hid_t id; // HDF5 dataspace id
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Sets the dataspace id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5DataSpace_H
diff --git a/Resources/windows-libs/HDF5/include/H5DataType.h b/Resources/windows-libs/HDF5/include/H5DataType.h
new file mode 100644
index 0000000000000000000000000000000000000000..dca0c871ebee32a9c189aa7399bc2ad7bbf16833
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DataType.h
@@ -0,0 +1,144 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// Class DataType inherits from H5Object and has several subclasses for
+// specific HDF5 data types.
+
+#ifndef __H5DataType_H
+#define __H5DataType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class DataType
+ \brief Class DataType provides generic operations on HDF5 datatypes.
+
+ DataType inherits from H5Object because a named datatype is an HDF5
+ object and is a base class of ArrayType, AtomType, CompType, EnumType,
+ and VarLenType.
+*/
+class H5_DLLCPP DataType : public H5Object {
+ public:
+ // Creates a datatype given its class and size
+ DataType( const H5T_class_t type_class, size_t size );
+
+ // Copy constructor: makes a copy of the original object
+ DataType( const DataType& original );
+
+ // Creates a datatype by way of dereference.
+ DataType(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ DataType(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+
+ // Closes this datatype.
+ virtual void close();
+
+ // Copies an existing datatype to this datatype object.
+ void copy(const DataType& like_type);
+
+ // Copies the datatype of dset to this datatype object.
+ void copy(const DataSet& dset);
+
+ // Returns the datatype class identifier.
+ H5T_class_t getClass() const;
+
+ // Commits a transient datatype to a file; this datatype becomes
+ // a named datatype which can be accessed from the location.
+ void commit(const H5Location& loc, const char* name);
+ void commit(const H5Location& loc, const H5std_string& name);
+ // These two overloaded functions are kept for backward compatibility
+ // only; they missed the const.
+ void commit(H5Location& loc, const char* name);
+ void commit(H5Location& loc, const H5std_string& name);
+
+ // Determines whether this datatype is a named datatype or
+ // a transient datatype.
+ bool committed() const;
+
+ // Finds a conversion function that can handle the conversion
+ // this datatype to the given datatype, dest.
+ H5T_conv_t find( const DataType& dest, H5T_cdata_t **pcdata ) const;
+
+ // Converts data from between specified datatypes.
+ void convert( const DataType& dest, size_t nelmts, void *buf, void *background, const PropList& plist=PropList::DEFAULT) const;
+
+ // Assignment operator
+ DataType& operator=( const DataType& rhs );
+
+ // Determines whether two datatypes are the same.
+ bool operator==(const DataType& compared_type ) const;
+
+ // Locks a datatype.
+ void lock() const;
+
+ // Returns the size of a datatype.
+ size_t getSize() const;
+
+ // Returns the base datatype from which a datatype is derived.
+ // Note: not quite right for specific types yet???
+ DataType getSuper() const;
+
+ // Registers a conversion function.
+ void registerFunc(H5T_pers_t pers, const char* name, const DataType& dest, H5T_conv_t func ) const;
+ void registerFunc(H5T_pers_t pers, const H5std_string& name, const DataType& dest, H5T_conv_t func ) const;
+
+ // Removes a conversion function from all conversion paths.
+ void unregister( H5T_pers_t pers, const char* name, const DataType& dest, H5T_conv_t func ) const;
+ void unregister( H5T_pers_t pers, const H5std_string& name, const DataType& dest, H5T_conv_t func ) const;
+
+ // Tags an opaque datatype.
+ void setTag( const char* tag ) const;
+ void setTag( const H5std_string& tag ) const;
+
+ // Gets the tag associated with an opaque datatype.
+ H5std_string getTag() const;
+
+ // Checks whether this datatype contains (or is) a certain type class.
+ bool detectClass(H5T_class_t cls) const;
+
+ // Checks whether this datatype is a variable-length string.
+ bool isVariableStr() const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("DataType"); }
+
+ // Creates a copy of an existing DataType using its id
+ DataType( const hid_t type_id );
+
+ // Default constructor
+ DataType();
+
+ // Gets the datatype id.
+ virtual hid_t getId() const;
+
+ // Destructor: properly terminates access to this datatype.
+ virtual ~DataType();
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ hid_t id; // HDF5 datatype id
+
+ // Sets the datatype id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ private:
+ void p_commit(hid_t loc_id, const char* name);
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5DataType_H
diff --git a/Resources/windows-libs/HDF5/include/H5DcreatProp.h b/Resources/windows-libs/HDF5/include/H5DcreatProp.h
new file mode 100644
index 0000000000000000000000000000000000000000..c643ace5cfc1d3ccd12cf3ca73eda591241fc09e
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DcreatProp.h
@@ -0,0 +1,133 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// Class DSetCreatPropList represents the HDF5 dataset creation property list
+// and inherits from PropList.
+
+#ifndef __H5DSCreatPropList_H
+#define __H5DSCreatPropList_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class DSetCreatPropList
+ \brief Class DSetCreatPropList represents the dataset creation property
+ list.
+*/
+class H5_DLLCPP DSetCreatPropList : public PropList {
+ public:
+ // Default dataset creation property list.
+ static const DSetCreatPropList DEFAULT;
+
+ // Creates a dataset creation property list.
+ DSetCreatPropList();
+
+ // Queries whether all the filters set in this property list are
+ // available currently.
+ bool allFiltersAvail();
+
+ // Get space allocation time for this property.
+ H5D_alloc_time_t getAllocTime();
+
+ // Set space allocation time for dataset during creation.
+ void setAllocTime(H5D_alloc_time_t alloc_time);
+
+ // Retrieves the size of the chunks used to store a chunked layout dataset.
+ int getChunk( int max_ndims, hsize_t* dim ) const;
+
+ // Sets the size of the chunks used to store a chunked layout dataset.
+ void setChunk( int ndims, const hsize_t* dim ) const;
+
+ // Returns information about an external file.
+ void getExternal( unsigned idx, size_t name_size, char* name, off_t& offset, hsize_t& size ) const;
+
+ // Returns the number of external files for a dataset.
+ int getExternalCount() const;
+
+ // Gets fill value writing time.
+ H5D_fill_time_t getFillTime();
+
+ // Sets fill value writing time for dataset.
+ void setFillTime(H5D_fill_time_t fill_time);
+
+ // Retrieves a dataset fill value.
+ void getFillValue( const DataType& fvalue_type, void* value ) const;
+
+ // Sets a dataset fill value.
+ void setFillValue( const DataType& fvalue_type, const void* value ) const;
+
+ // Returns information about a filter in a pipeline.
+ H5Z_filter_t getFilter(int filter_number, unsigned int& flags, size_t& cd_nelmts, unsigned int* cd_values, size_t namelen, char name[], unsigned int &filter_config) const;
+
+ // Returns information about a filter in a pipeline given the filter id.
+ void getFilterById(H5Z_filter_t filter_id, unsigned int &flags, size_t &cd_nelmts, unsigned int* cd_values, size_t namelen, char name[], unsigned int &filter_config) const;
+
+ // Gets the layout of the raw data storage of the data that uses this
+ // property list.
+ H5D_layout_t getLayout() const;
+
+ // Sets the type of storage used to store the raw data for the
+ // dataset that uses this property list.
+ void setLayout(H5D_layout_t layout) const;
+
+ // Returns the number of filters in the pipeline.
+ int getNfilters() const;
+
+ // Checks if fill value has been defined for this property.
+ H5D_fill_value_t isFillValueDefined();
+
+ // Modifies the specified filter.
+ void modifyFilter( H5Z_filter_t filter_id, unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[] ) const;
+
+ // Remove one or all filters from the filter pipeline.
+ void removeFilter( H5Z_filter_t filter_id) const;
+
+ // Sets compression method and compression level.
+ void setDeflate( int level ) const;
+
+ // Adds an external file to the list of external files.
+ void setExternal( const char* name, off_t offset, hsize_t size ) const;
+
+ // Adds a filter to the filter pipeline.
+ void setFilter( H5Z_filter_t filter, unsigned int flags = 0, size_t cd_nelmts = 0, const unsigned int cd_values[] = NULL) const;
+
+ // Sets Fletcher32 checksum of EDC for this property list.
+ void setFletcher32() const;
+
+ // Sets method of the shuffle filter.
+ void setShuffle() const;
+
+ // Sets SZIP compression method.
+ void setSzip(unsigned int options_mask, unsigned int pixels_per_block) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("DSetCreatPropList"); }
+
+ // Copy constructor: creates a copy of a DSetCreatPropList object.
+ DSetCreatPropList(const DSetCreatPropList& orig);
+
+ // Creates a copy of an existing dataset creation property list
+ // using the property list id.
+ DSetCreatPropList(const hid_t plist_id);
+
+ // Noop destructor.
+ virtual ~DSetCreatPropList();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5DSCreatPropList_H
diff --git a/Resources/windows-libs/HDF5/include/H5Dpkg.h b/Resources/windows-libs/HDF5/include/H5Dpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..5a785a3ba282872dc42b228cb08e80a1480c906c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Dpkg.h
@@ -0,0 +1,718 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Monday, April 14, 2003
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5D package. Source files outside the H5D package should
+ * include H5Dprivate.h instead.
+ */
+#ifndef H5D_PACKAGE
+#error "Do not include this file outside the H5D package!"
+#endif
+
+#ifndef _H5Dpkg_H
+#define _H5Dpkg_H
+
+/* Get package's private header */
+#include "H5Dprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5Gprivate.h" /* Groups */
+#include "H5SLprivate.h" /* Skip lists */
+#include "H5Tprivate.h" /* Datatypes */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Set the minimum object header size to create objects with */
+#define H5D_MINHDR_SIZE 256
+
+/* [Simple] Macro to construct a H5D_io_info_t from it's components */
+#define H5D_BUILD_IO_INFO_WRT(io_info, ds, dxpl_c, dxpl_i, str, buf) \
+ (io_info)->dset = ds; \
+ (io_info)->dxpl_cache = dxpl_c; \
+ (io_info)->dxpl_id = dxpl_i; \
+ (io_info)->store = str; \
+ (io_info)->op_type = H5D_IO_OP_WRITE; \
+ (io_info)->u.wbuf = buf
+#define H5D_BUILD_IO_INFO_RD(io_info, ds, dxpl_c, dxpl_i, str, buf) \
+ (io_info)->dset = ds; \
+ (io_info)->dxpl_cache = dxpl_c; \
+ (io_info)->dxpl_id = dxpl_i; \
+ (io_info)->store = str; \
+ (io_info)->op_type = H5D_IO_OP_READ; \
+ (io_info)->u.rbuf = buf
+
+#define H5D_CHUNK_HASH(D, ADDR) H5F_addr_hash(ADDR, (D)->cache.chunk.nslots)
+
+/* Flags for marking aspects of a dataset dirty */
+#define H5D_MARK_SPACE 0x01
+#define H5D_MARK_LAYOUT 0x02
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Typedef for datatype information for raw data I/O operation */
+typedef struct H5D_type_info_t {
+ /* Initial values */
+ const H5T_t *mem_type; /* Pointer to memory datatype */
+ const H5T_t *dset_type; /* Pointer to dataset datatype */
+ H5T_path_t *tpath; /* Datatype conversion path */
+ hid_t src_type_id; /* Source datatype ID */
+ hid_t dst_type_id; /* Destination datatype ID */
+
+ /* Computed/derived values */
+ size_t src_type_size; /* Size of source type */
+ size_t dst_type_size; /* Size of destination type*/
+ size_t max_type_size; /* Size of largest source/destination type */
+ hbool_t is_conv_noop; /* Whether the type conversion is a NOOP */
+ hbool_t is_xform_noop; /* Whether the data transform is a NOOP */
+ const H5T_subset_info_t *cmpd_subset; /* Info related to the compound subset conversion functions */
+ H5T_bkg_t need_bkg; /* Type of background buf needed */
+ size_t request_nelmts; /* Requested strip mine */
+ uint8_t *tconv_buf; /* Datatype conv buffer */
+ hbool_t tconv_buf_allocated; /* Whether the type conversion buffer was allocated */
+ uint8_t *bkg_buf; /* Background buffer */
+ hbool_t bkg_buf_allocated; /* Whether the background buffer was allocated */
+} H5D_type_info_t;
+
+/* Forward declaration of structs used below */
+struct H5D_io_info_t;
+struct H5D_chunk_map_t;
+
+/* Function pointers for I/O on particular types of dataset layouts */
+typedef herr_t (*H5D_layout_construct_func_t)(H5F_t *f, H5D_t *dset);
+typedef herr_t (*H5D_layout_init_func_t)(H5F_t *f, hid_t dxpl_id, const H5D_t *dset,
+ hid_t dapl_id);
+typedef hbool_t (*H5D_layout_is_space_alloc_func_t)(const H5O_storage_t *storage);
+typedef herr_t (*H5D_layout_io_init_func_t)(const struct H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ struct H5D_chunk_map_t *cm);
+typedef herr_t (*H5D_layout_read_func_t)(struct H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, struct H5D_chunk_map_t *fm);
+typedef herr_t (*H5D_layout_write_func_t)(struct H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, struct H5D_chunk_map_t *fm);
+typedef ssize_t (*H5D_layout_readvv_func_t)(const struct H5D_io_info_t *io_info,
+ size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
+ size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]);
+typedef ssize_t (*H5D_layout_writevv_func_t)(const struct H5D_io_info_t *io_info,
+ size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
+ size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]);
+typedef herr_t (*H5D_layout_flush_func_t)(H5D_t *dataset, hid_t dxpl_id);
+typedef herr_t (*H5D_layout_io_term_func_t)(const struct H5D_chunk_map_t *cm);
+
+/* Typedef for grouping layout I/O routines */
+typedef struct H5D_layout_ops_t {
+ H5D_layout_construct_func_t construct; /* Layout constructor for new datasets */
+ H5D_layout_init_func_t init; /* Layout initializer for dataset */
+ H5D_layout_is_space_alloc_func_t is_space_alloc; /* Query routine to determine if storage is allocated */
+ H5D_layout_io_init_func_t io_init; /* I/O initialization routine */
+ H5D_layout_read_func_t ser_read; /* High-level I/O routine for reading data in serial */
+ H5D_layout_write_func_t ser_write; /* High-level I/O routine for writing data in serial */
+#ifdef H5_HAVE_PARALLEL
+ H5D_layout_read_func_t par_read; /* High-level I/O routine for reading data in parallel */
+ H5D_layout_write_func_t par_write; /* High-level I/O routine for writing data in parallel */
+#endif /* H5_HAVE_PARALLEL */
+ H5D_layout_readvv_func_t readvv; /* Low-level I/O routine for reading data */
+ H5D_layout_writevv_func_t writevv; /* Low-level I/O routine for writing data */
+ H5D_layout_flush_func_t flush; /* Low-level I/O routine for flushing raw data */
+ H5D_layout_io_term_func_t io_term; /* I/O shutdown routine */
+} H5D_layout_ops_t;
+
+/* Function pointers for either multiple or single block I/O access */
+typedef herr_t (*H5D_io_single_read_func_t)(const struct H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+typedef herr_t (*H5D_io_single_write_func_t)(const struct H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+
+/* Typedef for raw data I/O framework info */
+typedef struct H5D_io_ops_t {
+ H5D_layout_read_func_t multi_read; /* High-level I/O routine for reading data */
+ H5D_layout_write_func_t multi_write; /* High-level I/O routine for writing data */
+ H5D_io_single_read_func_t single_read; /* I/O routine for reading single block */
+ H5D_io_single_write_func_t single_write; /* I/O routine for writing single block */
+} H5D_io_ops_t;
+
+/* Typedefs for dataset storage information */
+typedef struct {
+ haddr_t dset_addr; /* Address of dataset in file */
+ hsize_t dset_size; /* Total size of dataset in file */
+} H5D_contig_storage_t;
+
+typedef struct {
+ hsize_t index; /* "Index" of chunk in dataset (must be first for TBBT routines) */
+ hsize_t *offset; /* Chunk's coordinates in elements */
+} H5D_chunk_storage_t;
+
+typedef struct {
+ void *buf; /* Buffer for compact dataset */
+ hbool_t *dirty; /* Pointer to dirty flag to mark */
+} H5D_compact_storage_t;
+
+typedef union H5D_storage_t {
+ H5D_contig_storage_t contig; /* Contiguous information for dataset */
+ H5D_chunk_storage_t chunk; /* Chunk information for dataset */
+ H5D_compact_storage_t compact; /* Compact information for dataset */
+ H5O_efl_t efl; /* External file list information for dataset */
+} H5D_storage_t;
+
+/* Typedef for raw data I/O operation info */
+typedef enum H5D_io_op_type_t {
+ H5D_IO_OP_READ, /* Read operation */
+ H5D_IO_OP_WRITE /* Write operation */
+} H5D_io_op_type_t;
+
+typedef struct H5D_io_info_t {
+ const H5D_t *dset; /* Pointer to dataset being operated on */
+#ifndef H5_HAVE_PARALLEL
+ const
+#endif /* H5_HAVE_PARALLEL */
+ H5D_dxpl_cache_t *dxpl_cache; /* Pointer to cached DXPL info */
+ hid_t dxpl_id; /* Original DXPL ID */
+#ifdef H5_HAVE_PARALLEL
+ MPI_Comm comm; /* MPI communicator for file */
+ hbool_t using_mpi_vfd; /* Whether the file is using an MPI-based VFD */
+ struct {
+ H5FD_mpio_xfer_t xfer_mode; /* Parallel transfer for this request (H5D_XFER_IO_XFER_MODE_NAME) */
+ H5FD_mpio_collective_opt_t coll_opt_mode; /* Parallel transfer with independent IO or collective IO with this mode */
+ H5D_io_ops_t io_ops; /* I/O operation function pointers */
+ } orig;
+#endif /* H5_HAVE_PARALLEL */
+ H5D_storage_t *store; /* Dataset storage info */
+ H5D_layout_ops_t layout_ops; /* Dataset layout I/O operation function pointers */
+ H5D_io_ops_t io_ops; /* I/O operation function pointers */
+ H5D_io_op_type_t op_type;
+ union {
+ void *rbuf; /* Pointer to buffer for read */
+ const void *wbuf; /* Pointer to buffer to write */
+ } u;
+} H5D_io_info_t;
+
+
+/******************/
+/* Chunk typedefs */
+/******************/
+
+/* Typedef for chunked dataset index operation info */
+typedef struct H5D_chk_idx_info_t {
+ H5F_t *f; /* File pointer for operation */
+ hid_t dxpl_id; /* DXPL ID for operation */
+ const H5O_pline_t *pline; /* I/O pipeline info */
+ H5O_layout_chunk_t *layout; /* Chunk layout description */
+ H5O_storage_chunk_t *storage; /* Chunk storage description */
+} H5D_chk_idx_info_t;
+
+/*
+ * "Generic" chunk record. Each chunk is keyed by the minimum logical
+ * N-dimensional coordinates and the datatype size of the chunk.
+ * The fastest-varying dimension is assumed to reference individual bytes of
+ * the array, so a 100-element 1-D array of 4-byte integers would really be a
+ * 2-D array with the slow varying dimension of size 100 and the fast varying
+ * dimension of size 4 (the storage dimensionality has very little to do with
+ * the real dimensionality).
+ *
+ * The chunk's file address, filter mask and size on disk are not key values.
+ */
+typedef struct H5D_chunk_rec_t {
+ uint32_t nbytes; /* Size of stored data */
+ hsize_t offset[H5O_LAYOUT_NDIMS]; /* Logical offset to start */
+ unsigned filter_mask; /* Excluded filters */
+ haddr_t chunk_addr; /* Address of chunk in file */
+} H5D_chunk_rec_t;
+
+/*
+ * Common data exchange structure for indexed storage nodes. This structure is
+ * passed through the indexing layer to the methods for the objects
+ * to which the index points.
+ */
+typedef struct H5D_chunk_common_ud_t {
+ /* downward */
+ const H5O_layout_chunk_t *layout; /* Chunk layout description */
+ const H5O_storage_chunk_t *storage; /* Chunk storage description */
+ const hsize_t *offset; /* Logical offset of chunk */
+ const struct H5D_rdcc_t *rdcc; /* Chunk cache. Only necessary if the index may
+ * be modified, and if any chunks in the dset
+ * may be cached */
+} H5D_chunk_common_ud_t;
+
+/* B-tree callback info for various operations */
+typedef struct H5D_chunk_ud_t {
+ H5D_chunk_common_ud_t common; /* Common info for B-tree user data (must be first) */
+
+ /* Upward */
+ unsigned idx_hint; /*index of chunk in cache, if present */
+ uint32_t nbytes; /*size of stored data */
+ unsigned filter_mask; /*excluded filters */
+ haddr_t addr; /*file address of chunk */
+} H5D_chunk_ud_t;
+
+/* Typedef for "generic" chunk callbacks */
+typedef int (*H5D_chunk_cb_func_t)(const H5D_chunk_rec_t *chunk_rec,
+ void *udata);
+
+/* Typedefs for chunk operations */
+typedef herr_t (*H5D_chunk_init_func_t)(const H5D_chk_idx_info_t *idx_info,
+ const H5S_t *space, haddr_t dset_ohdr_addr);
+typedef herr_t (*H5D_chunk_create_func_t)(const H5D_chk_idx_info_t *idx_info);
+typedef hbool_t (*H5D_chunk_is_space_alloc_func_t)(const H5O_storage_chunk_t *storage);
+typedef herr_t (*H5D_chunk_insert_func_t)(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_ud_t *udata);
+typedef herr_t (*H5D_chunk_get_addr_func_t)(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_ud_t *udata);
+typedef herr_t (*H5D_chunk_resize_func_t)(H5O_layout_chunk_t *layout);
+typedef int (*H5D_chunk_iterate_func_t)(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_cb_func_t chunk_cb, void *chunk_udata);
+typedef herr_t (*H5D_chunk_remove_func_t)(const H5D_chk_idx_info_t *idx_info,
+ H5D_chunk_common_ud_t *udata);
+typedef herr_t (*H5D_chunk_delete_func_t)(const H5D_chk_idx_info_t *idx_info);
+typedef herr_t (*H5D_chunk_copy_setup_func_t)(const H5D_chk_idx_info_t *idx_info_src,
+ const H5D_chk_idx_info_t *idx_info_dst);
+typedef herr_t (*H5D_chunk_copy_shutdown_func_t)(H5O_storage_chunk_t *storage_src,
+ H5O_storage_chunk_t *storage_dst, hid_t dxpl_id);
+typedef herr_t (*H5D_chunk_size_func_t)(const H5D_chk_idx_info_t *idx_info,
+ hsize_t *idx_size);
+typedef herr_t (*H5D_chunk_reset_func_t)(H5O_storage_chunk_t *storage, hbool_t reset_addr);
+typedef herr_t (*H5D_chunk_dump_func_t)(const H5O_storage_chunk_t *storage,
+ FILE *stream);
+typedef herr_t (*H5D_chunk_dest_func_t)(const H5D_chk_idx_info_t *idx_info);
+
+/* Typedef for grouping chunk I/O routines */
+typedef struct H5D_chunk_ops_t {
+ H5D_chunk_init_func_t init; /* Routine to initialize indexing information in memory */
+ H5D_chunk_create_func_t create; /* Routine to create chunk index */
+ H5D_chunk_is_space_alloc_func_t is_space_alloc; /* Query routine to determine if storage/index is allocated */
+ H5D_chunk_insert_func_t insert; /* Routine to insert a chunk into an index */
+ H5D_chunk_get_addr_func_t get_addr; /* Routine to retrieve address of chunk in file */
+ H5D_chunk_resize_func_t resize; /* Routine to update chunk index info after resizing dataset */
+ H5D_chunk_iterate_func_t iterate; /* Routine to iterate over chunks */
+ H5D_chunk_remove_func_t remove; /* Routine to remove a chunk from an index */
+ H5D_chunk_delete_func_t idx_delete; /* Routine to delete index & all chunks from file*/
+ H5D_chunk_copy_setup_func_t copy_setup; /* Routine to perform any necessary setup for copying chunks */
+ H5D_chunk_copy_shutdown_func_t copy_shutdown; /* Routine to perform any necessary shutdown for copying chunks */
+ H5D_chunk_size_func_t size; /* Routine to get size of indexing information */
+ H5D_chunk_reset_func_t reset; /* Routine to reset indexing information */
+ H5D_chunk_dump_func_t dump; /* Routine to dump indexing information */
+ H5D_chunk_dest_func_t dest; /* Routine to destroy indexing information in memory */
+} H5D_chunk_ops_t;
+
+/* Structure holding information about a chunk's selection for mapping */
+typedef struct H5D_chunk_info_t {
+ hsize_t index; /* "Index" of chunk in dataset */
+ uint32_t chunk_points; /* Number of elements selected in chunk */
+ hsize_t coords[H5O_LAYOUT_NDIMS]; /* Coordinates of chunk in file dataset's dataspace */
+ H5S_t *fspace; /* Dataspace describing chunk & selection in it */
+ unsigned fspace_shared; /* Indicate that the file space for a chunk is shared and shouldn't be freed */
+ H5S_t *mspace; /* Dataspace describing selection in memory corresponding to this chunk */
+ unsigned mspace_shared; /* Indicate that the memory space for a chunk is shared and shouldn't be freed */
+} H5D_chunk_info_t;
+
+/* Main structure holding the mapping between file chunks and memory */
+typedef struct H5D_chunk_map_t {
+ H5O_layout_t *layout; /* Dataset layout information*/
+ hsize_t nelmts; /* Number of elements selected in file & memory dataspaces */
+
+ const H5S_t *file_space; /* Pointer to the file dataspace */
+ unsigned f_ndims; /* Number of dimensions for file dataspace */
+ hsize_t f_dims[H5O_LAYOUT_NDIMS]; /* File dataspace dimensions */
+
+ const H5S_t *mem_space; /* Pointer to the memory dataspace */
+ H5S_t *mchunk_tmpl; /* Dataspace template for new memory chunks */
+ H5S_sel_iter_t mem_iter; /* Iterator for elements in memory selection */
+ unsigned m_ndims; /* Number of dimensions for memory dataspace */
+ H5S_sel_type msel_type; /* Selection type in memory */
+
+ H5SL_t *sel_chunks; /* Skip list containing information for each chunk selected */
+
+ H5S_t *single_space; /* Dataspace for single chunk */
+ H5D_chunk_info_t *single_chunk_info; /* Pointer to single chunk's info */
+ hbool_t use_single; /* Whether I/O is on a single element */
+
+ hsize_t last_index; /* Index of last chunk operated on */
+ H5D_chunk_info_t *last_chunk_info; /* Pointer to last chunk's info */
+
+ hsize_t chunk_dim[H5O_LAYOUT_NDIMS]; /* Size of chunk in each dimension */
+
+#ifdef H5_HAVE_PARALLEL
+ H5D_chunk_info_t **select_chunk; /* Store the information about whether this chunk is selected or not */
+#endif /* H5_HAVE_PARALLEL */
+} H5D_chunk_map_t;
+
+/* Cached information about a particular chunk */
+typedef struct H5D_chunk_cached_t{
+ hbool_t valid; /*whether cache info is valid*/
+ hsize_t offset[H5O_LAYOUT_NDIMS]; /*logical offset to start*/
+ uint32_t nbytes; /*size of stored data */
+ unsigned filter_mask; /*excluded filters */
+ haddr_t addr; /*file address of chunk */
+} H5D_chunk_cached_t;
+
+/* The raw data chunk cache */
+typedef struct H5D_rdcc_t {
+ struct {
+ unsigned ninits; /* Number of chunk creations */
+ unsigned nhits; /* Number of cache hits */
+ unsigned nmisses;/* Number of cache misses */
+ unsigned nflushes;/* Number of cache flushes */
+ } stats;
+ size_t nbytes_max; /* Maximum cached raw data in bytes */
+ size_t nslots; /* Number of chunk slots allocated */
+ double w0; /* Chunk preemption policy */
+ struct H5D_rdcc_ent_t *head; /* Head of doubly linked list */
+ struct H5D_rdcc_ent_t *tail; /* Tail of doubly linked list */
+ size_t nbytes_used; /* Current cached raw data in bytes */
+ int nused; /* Number of chunk slots in use */
+ H5D_chunk_cached_t last; /* Cached copy of last chunk information */
+ struct H5D_rdcc_ent_t **slot; /* Chunk slots, each points to a chunk*/
+ H5SL_t *sel_chunks; /* Skip list containing information for each chunk selected */
+ H5S_t *single_space; /* Dataspace for single element I/O on chunks */
+ H5D_chunk_info_t *single_chunk_info; /* Pointer to single chunk's info */
+} H5D_rdcc_t;
+
+/* The raw data contiguous data cache */
+typedef struct H5D_rdcdc_t {
+ unsigned char *sieve_buf; /* Buffer to hold data sieve buffer */
+ haddr_t sieve_loc; /* File location (offset) of the data sieve buffer */
+ size_t sieve_size; /* Size of the data sieve buffer used (in bytes) */
+ size_t sieve_buf_size; /* Size of the data sieve buffer allocated (in bytes) */
+ hbool_t sieve_dirty; /* Flag to indicate that the data sieve buffer is dirty */
+} H5D_rdcdc_t;
+
+/*
+ * A dataset is made of two layers, an H5D_t struct that is unique to
+ * each instance of an opened datset, and a shared struct that is only
+ * created once for a given dataset. Thus, if a dataset is opened twice,
+ * there will be two IDs and two H5D_t structs, both sharing one H5D_shared_t.
+ */
+typedef struct H5D_shared_t {
+ size_t fo_count; /* Reference count */
+ hid_t type_id; /* ID for dataset's datatype */
+ H5T_t *type; /* Datatype for this dataset */
+ H5S_t *space; /* Dataspace of this dataset */
+ hbool_t space_dirty; /* Whether the dataspace info needs to be flushed to the file */
+ hbool_t layout_dirty; /* Whether the layout info needs to be flushed to the file */
+ hid_t dcpl_id; /* Dataset creation property id */
+ H5D_dcpl_cache_t dcpl_cache; /* Cached DCPL values */
+ H5O_layout_t layout; /* Data layout */
+ hbool_t checked_filters;/* TRUE if dataset passes can_apply check */
+
+ /* Buffered/cached information for types of raw data storage*/
+ struct {
+ H5D_rdcdc_t contig; /* Information about contiguous data */
+ /* (Note that the "contig" cache
+ * information can be used by a chunked
+ * dataset in certain circumstances)
+ */
+ H5D_rdcc_t chunk; /* Information about chunked data */
+ } cache;
+} H5D_shared_t;
+
+struct H5D_t {
+ H5O_loc_t oloc; /* Object header location */
+ H5G_name_t path; /* Group hierarchy path */
+ H5D_shared_t *shared; /* cached information from file */
+};
+
+/* Enumerated type for allocating dataset's storage */
+typedef enum {
+ H5D_ALLOC_CREATE, /* Dataset is being created */
+ H5D_ALLOC_OPEN, /* Dataset is being opened */
+ H5D_ALLOC_EXTEND, /* Dataset's dataspace is being extended */
+ H5D_ALLOC_WRITE /* Dataset is being extended */
+} H5D_time_alloc_t;
+
+
+/* Typedef for dataset creation operation */
+typedef struct {
+ hid_t type_id; /* Datatype for dataset */
+ const H5S_t *space; /* Dataspace for dataset */
+ hid_t dcpl_id; /* Dataset creation property list */
+ hid_t dapl_id; /* Dataset access property list */
+} H5D_obj_create_t;
+
+/* Typedef for filling a buffer with a fill value */
+typedef struct H5D_fill_buf_info_t {
+ H5MM_allocate_t fill_alloc_func; /* Routine to call for allocating fill buffer */
+ void *fill_alloc_info; /* Extra info for allocation routine */
+ H5MM_free_t fill_free_func; /* Routine to call for freeing fill buffer */
+ void *fill_free_info; /* Extra info for free routine */
+ H5T_path_t *fill_to_mem_tpath; /* Datatype conversion path for converting the fill value to the memory buffer */
+ H5T_path_t *mem_to_dset_tpath; /* Datatype conversion path for converting the memory buffer to the dataset elements */
+ const H5O_fill_t *fill; /* Pointer to fill value */
+ void *fill_buf; /* Fill buffer */
+ size_t fill_buf_size; /* Size of fill buffer */
+ hbool_t use_caller_fill_buf; /* Whether the caller provided the fill buffer */
+ void *bkg_buf; /* Background conversion buffer */
+ size_t bkg_buf_size; /* Size of background buffer */
+ H5T_t *mem_type; /* Pointer to memory datatype */
+ const H5T_t *file_type; /* Pointer to file datatype */
+ hid_t mem_tid; /* ID for memory version of disk datatype */
+ hid_t file_tid; /* ID for disk datatype */
+ size_t mem_elmt_size, file_elmt_size; /* Size of element in memory and on disk */
+ size_t max_elmt_size; /* Max. size of memory or file datatype */
+ size_t elmts_per_buf; /* # of elements that fit into a buffer */
+ hbool_t has_vlen_fill_type; /* Whether the datatype for the fill value has a variable-length component */
+} H5D_fill_buf_info_t;
+
+/* Internal data structure for computing variable-length dataset's total size */
+typedef struct {
+ H5D_t *dset; /* Dataset for operation */
+ H5S_t *fspace; /* Dataset's dataspace for operation */
+ H5S_t *mspace; /* Memory dataspace for operation */
+ void *fl_tbuf; /* Ptr to the temporary buffer we are using for fixed-length data */
+ void *vl_tbuf; /* Ptr to the temporary buffer we are using for VL data */
+ hid_t xfer_pid; /* ID of the dataset xfer property list */
+ hsize_t size; /* Accumulated number of bytes for the selection */
+} H5D_vlen_bufsize_t;
+
+/* Raw data chunks are cached. Each entry in the cache is: */
+typedef struct H5D_rdcc_ent_t {
+ hbool_t locked; /*entry is locked in cache */
+ hbool_t dirty; /*needs to be written to disk? */
+ hbool_t deleted; /*chunk about to be deleted (do not flush) */
+ hsize_t offset[H5O_LAYOUT_NDIMS]; /*chunk name */
+ uint32_t rd_count; /*bytes remaining to be read */
+ uint32_t wr_count; /*bytes remaining to be written */
+ haddr_t chunk_addr; /*address of chunk in file */
+ uint8_t *chunk; /*the unfiltered chunk data */
+ unsigned idx; /*index in hash table */
+ struct H5D_rdcc_ent_t *next;/*next item in doubly-linked list */
+ struct H5D_rdcc_ent_t *prev;/*previous item in doubly-linked list */
+} H5D_rdcc_ent_t;
+typedef H5D_rdcc_ent_t *H5D_rdcc_ent_ptr_t; /* For free lists */
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+extern H5D_dxpl_cache_t H5D_def_dxpl_cache;
+
+/* Storage layout class I/O operations */
+H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CONTIG[1];
+H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_EFL[1];
+H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_COMPACT[1];
+H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CHUNK[1];
+
+/* Chunked layout operations */
+H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_BTREE[1];
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+H5_DLL herr_t H5D__term_pub_interface(void);
+H5_DLL herr_t H5D__term_deprec_interface(void);
+H5_DLL H5D_t *H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space,
+ hid_t dcpl_id, hid_t dapl_id, hid_t dxpl_id);
+H5_DLL H5D_t *H5D__create_named(const H5G_loc_t *loc, const char *name,
+ hid_t type_id, const H5S_t *space, hid_t lcpl_id, hid_t dcpl_id,
+ hid_t dapl_id, hid_t dxpl_id);
+H5_DLL herr_t H5D__get_space_status(H5D_t *dset, H5D_space_status_t *allocation,
+ hid_t dxpl_id);
+H5_DLL herr_t H5D__alloc_storage(const H5D_t *dset, hid_t dxpl_id, H5D_time_alloc_t time_alloc,
+ hbool_t full_overwrite, hsize_t old_dim[]);
+H5_DLL herr_t H5D__get_storage_size(H5D_t *dset, hid_t dxpl_id, hsize_t *storage_size);
+H5_DLL haddr_t H5D__get_offset(const H5D_t *dset);
+H5_DLL herr_t H5D__iterate(void *buf, hid_t type_id, const H5S_t *space,
+ H5D_operator_t op, void *operator_data);
+H5_DLL void *H5D__vlen_get_buf_size_alloc(size_t size, void *info);
+H5_DLL herr_t H5D__vlen_get_buf_size(void *elem, hid_t type_id, unsigned ndim,
+ const hsize_t *point, void *op_data);
+H5_DLL herr_t H5D__check_filters(H5D_t *dataset);
+H5_DLL herr_t H5D__set_extent(H5D_t *dataset, const hsize_t *size, hid_t dxpl_id);
+H5_DLL herr_t H5D__get_dxpl_cache(hid_t dxpl_id, H5D_dxpl_cache_t **cache);
+H5_DLL herr_t H5D__flush_sieve_buf(H5D_t *dataset, hid_t dxpl_id);
+H5_DLL herr_t H5D__mark(const H5D_t *dataset, hid_t dxpl_id, unsigned flags);
+H5_DLL herr_t H5D__flush_real(H5D_t *dataset, hid_t dxpl_id);
+
+/* Internal I/O routines */
+H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id,
+ const H5S_t *mem_space, const H5S_t *file_space, hid_t dset_xfer_plist,
+ void *buf/*out*/);
+
+/* Functions that perform direct serial I/O operations */
+H5_DLL herr_t H5D__select_read(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+H5_DLL herr_t H5D__select_write(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+
+/* Functions that perform scatter-gather serial I/O operations */
+H5_DLL herr_t H5D__scatter_mem(const void *_tscat_buf,
+ const H5S_t *space, H5S_sel_iter_t *iter, size_t nelmts,
+ const H5D_dxpl_cache_t *dxpl_cache, void *_buf);
+H5_DLL herr_t H5D__scatgath_read(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+H5_DLL herr_t H5D__scatgath_write(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+
+/* Functions that operate on dataset's layout information */
+H5_DLL herr_t H5D__layout_set_io_ops(const H5D_t *dataset);
+H5_DLL size_t H5D__layout_meta_size(const H5F_t *f, const H5O_layout_t *layout,
+ hbool_t include_compact_data);
+H5_DLL herr_t H5D__layout_oh_create(H5F_t *file, hid_t dxpl_id, H5O_t *oh,
+ H5D_t *dset, hid_t dapl_id);
+H5_DLL herr_t H5D__layout_oh_read(H5D_t *dset, hid_t dxpl_id, hid_t dapl_id,
+ H5P_genplist_t *plist);
+H5_DLL herr_t H5D__layout_oh_write(H5D_t *dataset, hid_t dxpl_id, H5O_t *oh,
+ unsigned update_flags);
+
+/* Functions that operate on contiguous storage */
+H5_DLL herr_t H5D__contig_alloc(H5F_t *f, hid_t dxpl_id,
+ H5O_storage_contig_t *storage);
+H5_DLL hbool_t H5D__contig_is_space_alloc(const H5O_storage_t *storage);
+H5_DLL herr_t H5D__contig_fill(const H5D_t *dset, hid_t dxpl_id);
+H5_DLL herr_t H5D__contig_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ H5D_chunk_map_t *fm);
+H5_DLL herr_t H5D__contig_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
+ H5D_chunk_map_t *fm);
+H5_DLL herr_t H5D__contig_copy(H5F_t *f_src, const H5O_storage_contig_t *storage_src,
+ H5F_t *f_dst, H5O_storage_contig_t *storage_dst, H5T_t *src_dtype,
+ H5O_copy_t *cpy_info, hid_t dxpl_id);
+H5_DLL herr_t H5D__contig_delete(H5F_t *f, hid_t dxpl_id,
+ const H5O_storage_t *store);
+
+
+/* Functions that operate on chunked dataset storage */
+H5_DLL htri_t H5D__chunk_cacheable(const H5D_io_info_t *io_info, haddr_t caddr,
+ hbool_t write_op);
+H5_DLL herr_t H5D__chunk_create(const H5D_t *dset /*in,out*/, hid_t dxpl_id);
+H5_DLL herr_t H5D__chunk_set_info(const H5D_t *dset);
+H5_DLL herr_t H5D__chunk_init(H5F_t *f, hid_t dxpl_id, const H5D_t *dset,
+ hid_t dapl_id);
+H5_DLL hbool_t H5D__chunk_is_space_alloc(const H5O_storage_t *storage);
+H5_DLL herr_t H5D__chunk_lookup(const H5D_t *dset, hid_t dxpl_id,
+ const hsize_t *chunk_offset, hsize_t chunk_idx, H5D_chunk_ud_t *udata);
+H5_DLL void *H5D__chunk_lock(const H5D_io_info_t *io_info,
+ H5D_chunk_ud_t *udata, hbool_t relax);
+H5_DLL herr_t H5D__chunk_unlock(const H5D_io_info_t *io_info,
+ const H5D_chunk_ud_t *udata, hbool_t dirty, void *chunk,
+ uint32_t naccessed);
+H5_DLL herr_t H5D__chunk_allocated(H5D_t *dset, hid_t dxpl_id, hsize_t *nbytes);
+H5_DLL herr_t H5D__chunk_allocate(const H5D_t *dset, hid_t dxpl_id,
+ hbool_t full_overwrite, hsize_t old_dim[]);
+H5_DLL herr_t H5D__chunk_prune_by_extent(H5D_t *dset, hid_t dxpl_id,
+ const hsize_t *old_dim);
+#ifdef H5_HAVE_PARALLEL
+H5_DLL herr_t H5D__chunk_addrmap(const H5D_io_info_t *io_info, haddr_t chunk_addr[]);
+#endif /* H5_HAVE_PARALLEL */
+H5_DLL herr_t H5D__chunk_update_cache(H5D_t *dset, hid_t dxpl_id);
+H5_DLL herr_t H5D__chunk_copy(H5F_t *f_src, H5O_storage_chunk_t *storage_src,
+ H5O_layout_chunk_t *layout_src, H5F_t *f_dst, H5O_storage_chunk_t *storage_dst,
+ const H5S_extent_t *ds_extent_src, const H5T_t *dt_src,
+ const H5O_pline_t *pline_src, H5O_copy_t *cpy_info, hid_t dxpl_id);
+H5_DLL herr_t H5D__chunk_bh_info(H5F_t *f, hid_t dxpl_id, H5O_layout_t *layout,
+ const H5O_pline_t *pline, hsize_t *btree_size);
+H5_DLL herr_t H5D__chunk_dump_index(H5D_t *dset, hid_t dxpl_id, FILE *stream);
+H5_DLL herr_t H5D__chunk_dest(H5F_t *f, hid_t dxpl_id, H5D_t *dset);
+H5_DLL herr_t H5D__chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5O_storage_t *store);
+H5_DLL herr_t H5D__chunk_direct_write(const H5D_t *dset, hid_t dxpl_id, uint32_t filters,
+ hsize_t *offset, uint32_t data_size, const void *buf);
+#ifdef H5D_CHUNK_DEBUG
+H5_DLL herr_t H5D__chunk_stats(const H5D_t *dset, hbool_t headers);
+#endif /* H5D_CHUNK_DEBUG */
+
+/* Functions that operate on compact dataset storage */
+H5_DLL herr_t H5D__compact_fill(const H5D_t *dset, hid_t dxpl_id);
+H5_DLL herr_t H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *storage_src,
+ H5F_t *f_dst, H5O_storage_compact_t *storage_dst, H5T_t *src_dtype,
+ H5O_copy_t *cpy_info, hid_t dxpl_id);
+
+/* Functions that operate on EFL (External File List)*/
+H5_DLL hbool_t H5D__efl_is_space_alloc(const H5O_storage_t *storage);
+H5_DLL herr_t H5D__efl_bh_info(H5F_t *f, hid_t dxpl_id, H5O_efl_t *efl,
+ hsize_t *heap_size);
+
+/* Functions that perform fill value operations on datasets */
+H5_DLL herr_t H5D__fill(const void *fill, const H5T_t *fill_type, void *buf,
+ const H5T_t *buf_type, const H5S_t *space, hid_t dxpl_id);
+H5_DLL herr_t H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf,
+ H5MM_allocate_t alloc_func, void *alloc_info,
+ H5MM_free_t free_func, void *free_info,
+ const H5O_fill_t *fill, const H5T_t *dset_type, hid_t dset_type_id,
+ size_t nelmts, size_t min_buf_size, hid_t dxpl_id);
+H5_DLL herr_t H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts,
+ hid_t dxpl_id);
+H5_DLL herr_t H5D__fill_term(H5D_fill_buf_info_t *fb_info);
+
+#ifdef H5_HAVE_PARALLEL
+
+#ifdef H5S_DEBUG
+#ifndef H5Dmpio_DEBUG
+#define H5Dmpio_DEBUG
+#endif /*H5Dmpio_DEBUG*/
+#endif/*H5S_DEBUG*/
+/* MPI-IO function to read, it will select either regular or irregular read */
+H5_DLL herr_t H5D__mpio_select_read(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+
+/* MPI-IO function to write, it will select either regular or irregular read */
+H5_DLL herr_t H5D__mpio_select_write(const H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info,
+ hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
+
+/* MPI-IO functions to handle contiguous collective IO */
+H5_DLL herr_t H5D__contig_collective_read(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, H5D_chunk_map_t *fm);
+H5_DLL herr_t H5D__contig_collective_write(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, H5D_chunk_map_t *fm);
+
+/* MPI-IO functions to handle chunked collective IO */
+H5_DLL herr_t H5D__chunk_collective_read(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, H5D_chunk_map_t *fm);
+H5_DLL herr_t H5D__chunk_collective_write(H5D_io_info_t *io_info,
+ const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
+ const H5S_t *mem_space, H5D_chunk_map_t *fm);
+
+/* MPI-IO function to check if a direct I/O transfer is possible between
+ * memory and the file */
+H5_DLL htri_t H5D__mpio_opt_possible(const H5D_io_info_t *io_info,
+ const H5S_t *file_space, const H5S_t *mem_space,
+ const H5D_type_info_t *type_info, const H5D_chunk_map_t *fm,
+ H5P_genplist_t *dx_plist);
+
+#endif /* H5_HAVE_PARALLEL */
+
+/* Testing functions */
+#ifdef H5D_TESTING
+H5_DLL herr_t H5D__layout_version_test(hid_t did, unsigned *version);
+H5_DLL herr_t H5D__layout_contig_size_test(hid_t did, hsize_t *size);
+H5_DLL herr_t H5D__current_cache_size_test(hid_t did, size_t *nbytes_used, int *nused);
+#endif /* H5D_TESTING */
+
+#endif /*_H5Dpkg_H*/
+
diff --git a/Resources/windows-libs/HDF5/include/H5Dpublic.h b/Resources/windows-libs/HDF5/include/H5Dpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..4309d6409c38800eeb64b92f39eb969d6ee61e6e
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Dpublic.h
@@ -0,0 +1,173 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5D module.
+ */
+#ifndef _H5Dpublic_H
+#define _H5Dpublic_H
+
+/* System headers needed by this file */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Macros used to "unset" chunk cache configuration parameters */
+#define H5D_CHUNK_CACHE_NSLOTS_DEFAULT ((size_t) -1)
+#define H5D_CHUNK_CACHE_NBYTES_DEFAULT ((size_t) -1)
+#define H5D_CHUNK_CACHE_W0_DEFAULT -1.
+
+/* Property names for H5LTDdirect_chunk_write */
+#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize"
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Values for the H5D_LAYOUT property */
+typedef enum H5D_layout_t {
+ H5D_LAYOUT_ERROR = -1,
+
+ H5D_COMPACT = 0, /*raw data is very small */
+ H5D_CONTIGUOUS = 1, /*the default */
+ H5D_CHUNKED = 2, /*slow and fancy */
+ H5D_NLAYOUTS = 3 /*this one must be last! */
+} H5D_layout_t;
+
+/* Types of chunk index data structures */
+typedef enum H5D_chunk_index_t {
+ H5D_CHUNK_BTREE = 0 /* v1 B-tree index */
+} H5D_chunk_index_t;
+
+/* Values for the space allocation time property */
+typedef enum H5D_alloc_time_t {
+ H5D_ALLOC_TIME_ERROR = -1,
+ H5D_ALLOC_TIME_DEFAULT = 0,
+ H5D_ALLOC_TIME_EARLY = 1,
+ H5D_ALLOC_TIME_LATE = 2,
+ H5D_ALLOC_TIME_INCR = 3
+} H5D_alloc_time_t;
+
+/* Values for the status of space allocation */
+typedef enum H5D_space_status_t {
+ H5D_SPACE_STATUS_ERROR = -1,
+ H5D_SPACE_STATUS_NOT_ALLOCATED = 0,
+ H5D_SPACE_STATUS_PART_ALLOCATED = 1,
+ H5D_SPACE_STATUS_ALLOCATED = 2
+} H5D_space_status_t;
+
+/* Values for time of writing fill value property */
+typedef enum H5D_fill_time_t {
+ H5D_FILL_TIME_ERROR = -1,
+ H5D_FILL_TIME_ALLOC = 0,
+ H5D_FILL_TIME_NEVER = 1,
+ H5D_FILL_TIME_IFSET = 2
+} H5D_fill_time_t;
+
+/* Values for fill value status */
+typedef enum H5D_fill_value_t {
+ H5D_FILL_VALUE_ERROR =-1,
+ H5D_FILL_VALUE_UNDEFINED =0,
+ H5D_FILL_VALUE_DEFAULT =1,
+ H5D_FILL_VALUE_USER_DEFINED =2
+} H5D_fill_value_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Define the operator function pointer for H5Diterate() */
+typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id, unsigned ndim,
+ const hsize_t *point, void *operator_data);
+
+/* Define the operator function pointer for H5Dscatter() */
+typedef herr_t (*H5D_scatter_func_t)(const void **src_buf/*out*/,
+ size_t *src_buf_bytes_used/*out*/,
+ void *op_data);
+
+/* Define the operator function pointer for H5Dgather() */
+typedef herr_t (*H5D_gather_func_t)(const void *dst_buf,
+ size_t dst_buf_bytes_used, void *op_data);
+
+H5_DLL hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id);
+H5_DLL hid_t H5Dcreate_anon(hid_t file_id, hid_t type_id, hid_t space_id,
+ hid_t plist_id, hid_t dapl_id);
+H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
+H5_DLL herr_t H5Dclose(hid_t dset_id);
+H5_DLL hid_t H5Dget_space(hid_t dset_id);
+H5_DLL herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation);
+H5_DLL hid_t H5Dget_type(hid_t dset_id);
+H5_DLL hid_t H5Dget_create_plist(hid_t dset_id);
+H5_DLL hid_t H5Dget_access_plist(hid_t dset_id);
+H5_DLL hsize_t H5Dget_storage_size(hid_t dset_id);
+H5_DLL haddr_t H5Dget_offset(hid_t dset_id);
+H5_DLL herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t plist_id, void *buf/*out*/);
+H5_DLL herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t plist_id, const void *buf);
+H5_DLL herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id,
+ H5D_operator_t op, void *operator_data);
+H5_DLL herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf);
+H5_DLL herr_t H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size);
+H5_DLL herr_t H5Dfill(const void *fill, hid_t fill_type, void *buf,
+ hid_t buf_type, hid_t space);
+H5_DLL herr_t H5Dset_extent(hid_t dset_id, const hsize_t size[]);
+H5_DLL herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id,
+ hid_t dst_space_id, void *dst_buf);
+H5_DLL herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
+ size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data);
+H5_DLL herr_t H5Ddebug(hid_t dset_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Dcreate1(hid_t file_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t dcpl_id);
+H5_DLL hid_t H5Dopen1(hid_t file_id, const char *name);
+H5_DLL herr_t H5Dextend(hid_t dset_id, const hsize_t size[]);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Dpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5DxferProp.h b/Resources/windows-libs/HDF5/include/H5DxferProp.h
new file mode 100644
index 0000000000000000000000000000000000000000..835dfdbe73bbf97ec5c40f1709b6f12fdad25d3c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5DxferProp.h
@@ -0,0 +1,123 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// Class DSetMemXferPropList represents the HDF5 dataset transfer property list
+// and inherits from PropList.
+
+#ifndef __H5DSetMemXferPropList_H
+#define __H5DSetMemXferPropList_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class DSetMemXferPropList
+ \brief Class DSetMemXferPropList represents the dataset memory and
+ transfer property list.
+*/
+class H5_DLLCPP DSetMemXferPropList : public PropList {
+ public:
+ static const DSetMemXferPropList DEFAULT;
+
+ // Creates a dataset memory and transfer property list.
+ DSetMemXferPropList();
+
+ // Creates a dataset transform property list.
+ DSetMemXferPropList(const char* expression);
+
+ // Sets type conversion and background buffers.
+ void setBuffer( size_t size, void* tconv, void* bkg ) const;
+
+ // Reads buffer settings.
+ size_t getBuffer( void** tconv, void** bkg ) const;
+
+ // Sets B-tree split ratios for a dataset transfer property list.
+ void setBtreeRatios( double left, double middle, double right ) const;
+
+ // Gets B-tree split ratios for a dataset transfer property list.
+ void getBtreeRatios( double& left, double& middle, double& right ) const;
+
+ // Sets data transform expression.
+ void setDataTransform(const char* expression) const;
+ void setDataTransform(const H5std_string& expression) const;
+
+ // Gets data transform expression.
+ ssize_t getDataTransform(char* exp, size_t buf_size=0) const;
+ H5std_string getDataTransform() const;
+
+ // Sets the dataset transfer property list status to TRUE or FALSE.
+ void setPreserve( bool status ) const;
+
+ // Checks status of the dataset transfer property list.
+ bool getPreserve() const;
+
+ // Sets an exception handling callback for datatype conversion.
+ void setTypeConvCB( H5T_conv_except_func_t op, void *user_data) const;
+
+ // Gets the exception handling callback for datatype conversion.
+ void getTypeConvCB( H5T_conv_except_func_t *op, void **user_data) const;
+
+ // Sets the memory manager for variable-length datatype
+ // allocation in H5Dread and H5Dvlen_reclaim.
+ void setVlenMemManager( H5MM_allocate_t alloc, void* alloc_info,
+ H5MM_free_t free, void* free_info ) const;
+
+ // alloc and free are set to NULL, indicating that system
+ // malloc and free are to be used.
+ void setVlenMemManager() const;
+
+ // Gets the memory manager for variable-length datatype
+ // allocation in H5Dread and H5Tvlen_reclaim.
+ void getVlenMemManager( H5MM_allocate_t& alloc, void** alloc_info,
+ H5MM_free_t& free, void** free_info ) const;
+
+ // Sets the size of a contiguous block reserved for small data.
+ void setSmallDataBlockSize(hsize_t size);
+
+ // Returns the current small data block size setting.
+ hsize_t getSmallDataBlockSize();
+
+ // Sets number of I/O vectors to be read/written in hyperslab I/O.
+ void setHyperVectorSize(size_t vector_size);
+
+ // Returns the number of I/O vectors to be read/written in
+ // hyperslab I/O.
+ size_t getHyperVectorSize();
+
+ // Enables or disables error-detecting for a dataset reading
+ // process.
+ void setEDCCheck(H5Z_EDC_t check);
+
+ // Determines whether error-detection is enabled for dataset reads.
+ H5Z_EDC_t getEDCCheck();
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("DSetMemXferPropList"); }
+
+ // Copy constructor: makes a copy of a DSetMemXferPropList object.
+ DSetMemXferPropList(const DSetMemXferPropList& orig);
+
+ // Creates a copy of an existing dataset memory and transfer
+ // property list using the property list id.
+ DSetMemXferPropList(const hid_t plist_id);
+
+ // Noop destructor
+ virtual ~DSetMemXferPropList();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5DSetMemXferPropList_H
diff --git a/Resources/windows-libs/HDF5/include/H5Edefin.h b/Resources/windows-libs/HDF5/include/H5Edefin.h
new file mode 100644
index 0000000000000000000000000000000000000000..8bc52dd09908577255b094f09a186ecb55abe1eb
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Edefin.h
@@ -0,0 +1,216 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_err -- do not edit */
+/* Add new errors to H5err.txt file */
+
+
+#ifndef _H5Edefin_H
+#define _H5Edefin_H
+
+/* Major error IDs */
+hid_t H5E_DATASET_g = FAIL; /* Dataset */
+hid_t H5E_FUNC_g = FAIL; /* Function entry/exit */
+hid_t H5E_STORAGE_g = FAIL; /* Data storage */
+hid_t H5E_FILE_g = FAIL; /* File accessibilty */
+hid_t H5E_SOHM_g = FAIL; /* Shared Object Header Messages */
+hid_t H5E_SYM_g = FAIL; /* Symbol table */
+hid_t H5E_PLUGIN_g = FAIL; /* Plugin for dynamically loaded library */
+hid_t H5E_VFL_g = FAIL; /* Virtual File Layer */
+hid_t H5E_INTERNAL_g = FAIL; /* Internal error (too specific to document in detail) */
+hid_t H5E_BTREE_g = FAIL; /* B-Tree node */
+hid_t H5E_REFERENCE_g = FAIL; /* References */
+hid_t H5E_DATASPACE_g = FAIL; /* Dataspace */
+hid_t H5E_RESOURCE_g = FAIL; /* Resource unavailable */
+hid_t H5E_PLIST_g = FAIL; /* Property lists */
+hid_t H5E_LINK_g = FAIL; /* Links */
+hid_t H5E_DATATYPE_g = FAIL; /* Datatype */
+hid_t H5E_RS_g = FAIL; /* Reference Counted Strings */
+hid_t H5E_HEAP_g = FAIL; /* Heap */
+hid_t H5E_OHDR_g = FAIL; /* Object header */
+hid_t H5E_ATOM_g = FAIL; /* Object atom */
+hid_t H5E_ATTR_g = FAIL; /* Attribute */
+hid_t H5E_NONE_MAJOR_g = FAIL; /* No error */
+hid_t H5E_IO_g = FAIL; /* Low-level I/O */
+hid_t H5E_SLIST_g = FAIL; /* Skip Lists */
+hid_t H5E_EFL_g = FAIL; /* External file list */
+hid_t H5E_TST_g = FAIL; /* Ternary Search Trees */
+hid_t H5E_ARGS_g = FAIL; /* Invalid arguments to routine */
+hid_t H5E_ERROR_g = FAIL; /* Error API */
+hid_t H5E_PLINE_g = FAIL; /* Data filters */
+hid_t H5E_FSPACE_g = FAIL; /* Free Space Manager */
+hid_t H5E_CACHE_g = FAIL; /* Object cache */
+
+/* Minor error IDs */
+
+/* Generic low-level file I/O errors */
+hid_t H5E_SEEKERROR_g = FAIL; /* Seek failed */
+hid_t H5E_READERROR_g = FAIL; /* Read failed */
+hid_t H5E_WRITEERROR_g = FAIL; /* Write failed */
+hid_t H5E_CLOSEERROR_g = FAIL; /* Close failed */
+hid_t H5E_OVERFLOW_g = FAIL; /* Address overflowed */
+hid_t H5E_FCNTL_g = FAIL; /* File control (fcntl) failed */
+
+/* Resource errors */
+hid_t H5E_NOSPACE_g = FAIL; /* No space available for allocation */
+hid_t H5E_CANTALLOC_g = FAIL; /* Can't allocate space */
+hid_t H5E_CANTCOPY_g = FAIL; /* Unable to copy object */
+hid_t H5E_CANTFREE_g = FAIL; /* Unable to free object */
+hid_t H5E_ALREADYEXISTS_g = FAIL; /* Object already exists */
+hid_t H5E_CANTLOCK_g = FAIL; /* Unable to lock object */
+hid_t H5E_CANTUNLOCK_g = FAIL; /* Unable to unlock object */
+hid_t H5E_CANTGC_g = FAIL; /* Unable to garbage collect */
+hid_t H5E_CANTGETSIZE_g = FAIL; /* Unable to compute size */
+hid_t H5E_OBJOPEN_g = FAIL; /* Object is already open */
+
+/* Heap errors */
+hid_t H5E_CANTRESTORE_g = FAIL; /* Can't restore condition */
+hid_t H5E_CANTCOMPUTE_g = FAIL; /* Can't compute value */
+hid_t H5E_CANTEXTEND_g = FAIL; /* Can't extend heap's space */
+hid_t H5E_CANTATTACH_g = FAIL; /* Can't attach object */
+hid_t H5E_CANTUPDATE_g = FAIL; /* Can't update object */
+hid_t H5E_CANTOPERATE_g = FAIL; /* Can't operate on object */
+
+/* Function entry/exit interface errors */
+hid_t H5E_CANTINIT_g = FAIL; /* Unable to initialize object */
+hid_t H5E_ALREADYINIT_g = FAIL; /* Object already initialized */
+hid_t H5E_CANTRELEASE_g = FAIL; /* Unable to release object */
+
+/* Property list errors */
+hid_t H5E_CANTGET_g = FAIL; /* Can't get value */
+hid_t H5E_CANTSET_g = FAIL; /* Can't set value */
+hid_t H5E_DUPCLASS_g = FAIL; /* Duplicate class name in parent class */
+hid_t H5E_SETDISALLOWED_g = FAIL; /* Disallowed operation */
+
+/* Free space errors */
+hid_t H5E_CANTMERGE_g = FAIL; /* Can't merge objects */
+hid_t H5E_CANTREVIVE_g = FAIL; /* Can't revive object */
+hid_t H5E_CANTSHRINK_g = FAIL; /* Can't shrink container */
+
+/* Object header related errors */
+hid_t H5E_LINKCOUNT_g = FAIL; /* Bad object header link count */
+hid_t H5E_VERSION_g = FAIL; /* Wrong version number */
+hid_t H5E_ALIGNMENT_g = FAIL; /* Alignment error */
+hid_t H5E_BADMESG_g = FAIL; /* Unrecognized message */
+hid_t H5E_CANTDELETE_g = FAIL; /* Can't delete message */
+hid_t H5E_BADITER_g = FAIL; /* Iteration failed */
+hid_t H5E_CANTPACK_g = FAIL; /* Can't pack messages */
+hid_t H5E_CANTRESET_g = FAIL; /* Can't reset object */
+hid_t H5E_CANTRENAME_g = FAIL; /* Unable to rename object */
+
+/* System level errors */
+hid_t H5E_SYSERRSTR_g = FAIL; /* System error message */
+
+/* I/O pipeline errors */
+hid_t H5E_NOFILTER_g = FAIL; /* Requested filter is not available */
+hid_t H5E_CALLBACK_g = FAIL; /* Callback failed */
+hid_t H5E_CANAPPLY_g = FAIL; /* Error from filter 'can apply' callback */
+hid_t H5E_SETLOCAL_g = FAIL; /* Error from filter 'set local' callback */
+hid_t H5E_NOENCODER_g = FAIL; /* Filter present but encoding disabled */
+hid_t H5E_CANTFILTER_g = FAIL; /* Filter operation failed */
+
+/* Group related errors */
+hid_t H5E_CANTOPENOBJ_g = FAIL; /* Can't open object */
+hid_t H5E_CANTCLOSEOBJ_g = FAIL; /* Can't close object */
+hid_t H5E_COMPLEN_g = FAIL; /* Name component is too long */
+hid_t H5E_PATH_g = FAIL; /* Problem with path to object */
+
+/* No error */
+hid_t H5E_NONE_MINOR_g = FAIL; /* No error */
+
+/* Plugin errors */
+hid_t H5E_OPENERROR_g = FAIL; /* Can't open directory or file */
+
+/* File accessibilty errors */
+hid_t H5E_FILEEXISTS_g = FAIL; /* File already exists */
+hid_t H5E_FILEOPEN_g = FAIL; /* File already open */
+hid_t H5E_CANTCREATE_g = FAIL; /* Unable to create file */
+hid_t H5E_CANTOPENFILE_g = FAIL; /* Unable to open file */
+hid_t H5E_CANTCLOSEFILE_g = FAIL; /* Unable to close file */
+hid_t H5E_NOTHDF5_g = FAIL; /* Not an HDF5 file */
+hid_t H5E_BADFILE_g = FAIL; /* Bad file ID accessed */
+hid_t H5E_TRUNCATED_g = FAIL; /* File has been truncated */
+hid_t H5E_MOUNT_g = FAIL; /* File mount error */
+
+/* Object atom related errors */
+hid_t H5E_BADATOM_g = FAIL; /* Unable to find atom information (already closed?) */
+hid_t H5E_BADGROUP_g = FAIL; /* Unable to find ID group information */
+hid_t H5E_CANTREGISTER_g = FAIL; /* Unable to register new atom */
+hid_t H5E_CANTINC_g = FAIL; /* Unable to increment reference count */
+hid_t H5E_CANTDEC_g = FAIL; /* Unable to decrement reference count */
+hid_t H5E_NOIDS_g = FAIL; /* Out of IDs for group */
+
+/* Cache related errors */
+hid_t H5E_CANTFLUSH_g = FAIL; /* Unable to flush data from cache */
+hid_t H5E_CANTSERIALIZE_g = FAIL; /* Unable to serialize data from cache */
+hid_t H5E_CANTLOAD_g = FAIL; /* Unable to load metadata into cache */
+hid_t H5E_PROTECT_g = FAIL; /* Protected metadata error */
+hid_t H5E_NOTCACHED_g = FAIL; /* Metadata not currently cached */
+hid_t H5E_SYSTEM_g = FAIL; /* Internal error detected */
+hid_t H5E_CANTINS_g = FAIL; /* Unable to insert metadata into cache */
+hid_t H5E_CANTPROTECT_g = FAIL; /* Unable to protect metadata */
+hid_t H5E_CANTUNPROTECT_g = FAIL; /* Unable to unprotect metadata */
+hid_t H5E_CANTPIN_g = FAIL; /* Unable to pin cache entry */
+hid_t H5E_CANTUNPIN_g = FAIL; /* Unable to un-pin cache entry */
+hid_t H5E_CANTMARKDIRTY_g = FAIL; /* Unable to mark a pinned entry as dirty */
+hid_t H5E_CANTDIRTY_g = FAIL; /* Unable to mark metadata as dirty */
+hid_t H5E_CANTEXPUNGE_g = FAIL; /* Unable to expunge a metadata cache entry */
+hid_t H5E_CANTRESIZE_g = FAIL; /* Unable to resize a metadata cache entry */
+
+/* Link related errors */
+hid_t H5E_TRAVERSE_g = FAIL; /* Link traversal failure */
+hid_t H5E_NLINKS_g = FAIL; /* Too many soft links in path */
+hid_t H5E_NOTREGISTERED_g = FAIL; /* Link class not registered */
+hid_t H5E_CANTMOVE_g = FAIL; /* Can't move object */
+hid_t H5E_CANTSORT_g = FAIL; /* Can't sort objects */
+
+/* Parallel MPI errors */
+hid_t H5E_MPI_g = FAIL; /* Some MPI function failed */
+hid_t H5E_MPIERRSTR_g = FAIL; /* MPI Error String */
+hid_t H5E_CANTRECV_g = FAIL; /* Can't receive data */
+
+/* Dataspace errors */
+hid_t H5E_CANTCLIP_g = FAIL; /* Can't clip hyperslab region */
+hid_t H5E_CANTCOUNT_g = FAIL; /* Can't count elements */
+hid_t H5E_CANTSELECT_g = FAIL; /* Can't select hyperslab */
+hid_t H5E_CANTNEXT_g = FAIL; /* Can't move to next iterator location */
+hid_t H5E_BADSELECT_g = FAIL; /* Invalid selection */
+hid_t H5E_CANTCOMPARE_g = FAIL; /* Can't compare objects */
+
+/* Argument errors */
+hid_t H5E_UNINITIALIZED_g = FAIL; /* Information is uinitialized */
+hid_t H5E_UNSUPPORTED_g = FAIL; /* Feature is unsupported */
+hid_t H5E_BADTYPE_g = FAIL; /* Inappropriate type */
+hid_t H5E_BADRANGE_g = FAIL; /* Out of range */
+hid_t H5E_BADVALUE_g = FAIL; /* Bad value */
+
+/* B-tree related errors */
+hid_t H5E_NOTFOUND_g = FAIL; /* Object not found */
+hid_t H5E_EXISTS_g = FAIL; /* Object already exists */
+hid_t H5E_CANTENCODE_g = FAIL; /* Unable to encode value */
+hid_t H5E_CANTDECODE_g = FAIL; /* Unable to decode value */
+hid_t H5E_CANTSPLIT_g = FAIL; /* Unable to split node */
+hid_t H5E_CANTREDISTRIBUTE_g = FAIL; /* Unable to redistribute records */
+hid_t H5E_CANTSWAP_g = FAIL; /* Unable to swap records */
+hid_t H5E_CANTINSERT_g = FAIL; /* Unable to insert object */
+hid_t H5E_CANTLIST_g = FAIL; /* Unable to list node */
+hid_t H5E_CANTMODIFY_g = FAIL; /* Unable to modify record */
+hid_t H5E_CANTREMOVE_g = FAIL; /* Unable to remove object */
+
+/* Datatype conversion errors */
+hid_t H5E_CANTCONVERT_g = FAIL; /* Can't convert datatypes */
+hid_t H5E_BADSIZE_g = FAIL; /* Bad size for object */
+
+#endif /* H5Edefin_H */
diff --git a/Resources/windows-libs/HDF5/include/H5Einit.h b/Resources/windows-libs/HDF5/include/H5Einit.h
new file mode 100644
index 0000000000000000000000000000000000000000..9dadd4186c4ac97ee14a77d20655bdb3de21d458
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Einit.h
@@ -0,0 +1,810 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_err -- do not edit */
+/* Add new errors to H5err.txt file */
+
+
+#ifndef _H5Einit_H
+#define _H5Einit_H
+
+/*********************/
+/* Major error codes */
+/*********************/
+
+assert(H5E_DATASET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Dataset"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_DATASET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FUNC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Function entry/exit"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FUNC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_STORAGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data storage"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_STORAGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FILE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "File accessibilty"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SOHM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Shared Object Header Messages"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SOHM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SYM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Symbol table"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SYM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PLUGIN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Plugin for dynamically loaded library"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PLUGIN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_VFL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Virtual File Layer"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_VFL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_INTERNAL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Internal error (too specific to document in detail)"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_INTERNAL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BTREE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "B-Tree node"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BTREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_REFERENCE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "References"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_REFERENCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_DATASPACE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Dataspace"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_DATASPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_RESOURCE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Resource unavailable"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_RESOURCE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Property lists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_LINK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Links"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_LINK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_DATATYPE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Datatype"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_DATATYPE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_RS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Reference Counted Strings"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_RS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_HEAP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Heap"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_HEAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_OHDR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object header"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_OHDR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ATOM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object atom"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ATTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Attribute"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ATTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NONE_MAJOR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "No error"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NONE_MAJOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_IO_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Low-level I/O"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_IO_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Skip Lists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_EFL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "External file list"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_EFL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_TST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Ternary Search Trees"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_TST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ARGS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Invalid arguments to routine"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ARGS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Error API"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PLINE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Data filters"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PLINE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FSPACE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Free Space Manager"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CACHE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MAJOR, "Object cache"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CACHE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/*********************/
+/* Minor error codes */
+/*********************/
+
+
+/* Generic low-level file I/O errors */
+assert(H5E_SEEKERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Seek failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SEEKERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_READERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Read failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_READERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_WRITEERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Write failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_WRITEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CLOSEERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Close failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CLOSEERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_OVERFLOW_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Address overflowed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_OVERFLOW_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FCNTL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File control (fcntl) failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FCNTL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Resource errors */
+assert(H5E_NOSPACE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "No space available for allocation"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOSPACE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTALLOC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't allocate space"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTALLOC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCOPY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to copy object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCOPY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTFREE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to free object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTFREE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ALREADYEXISTS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ALREADYEXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTLOCK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to lock object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUNLOCK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to unlock object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUNLOCK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTGC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to garbage collect"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTGC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTGETSIZE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to compute size"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTGETSIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_OBJOPEN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object is already open"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_OBJOPEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Heap errors */
+assert(H5E_CANTRESTORE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't restore condition"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRESTORE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCOMPUTE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compute value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCOMPUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTEXTEND_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't extend heap's space"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTEXTEND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTATTACH_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't attach object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTATTACH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUPDATE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't update object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUPDATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTOPERATE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't operate on object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTOPERATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Function entry/exit interface errors */
+assert(H5E_CANTINIT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to initialize object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTINIT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ALREADYINIT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already initialized"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ALREADYINIT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRELEASE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to release object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRELEASE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Property list errors */
+assert(H5E_CANTGET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't get value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTGET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't set value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_DUPCLASS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Duplicate class name in parent class"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_DUPCLASS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SETDISALLOWED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Disallowed operation"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SETDISALLOWED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Free space errors */
+assert(H5E_CANTMERGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't merge objects"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMERGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREVIVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't revive object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREVIVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSHRINK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't shrink container"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSHRINK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Object header related errors */
+assert(H5E_LINKCOUNT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad object header link count"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_LINKCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_VERSION_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Wrong version number"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_VERSION_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_ALIGNMENT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Alignment error"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_ALIGNMENT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADMESG_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unrecognized message"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADMESG_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTDELETE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't delete message"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTDELETE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADITER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Iteration failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADITER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTPACK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't pack messages"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTPACK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRESET_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't reset object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRESET_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRENAME_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to rename object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRENAME_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* System level errors */
+assert(H5E_SYSERRSTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "System error message"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SYSERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* I/O pipeline errors */
+assert(H5E_NOFILTER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Requested filter is not available"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOFILTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CALLBACK_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Callback failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CALLBACK_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANAPPLY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Error from filter 'can apply' callback"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANAPPLY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SETLOCAL_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Error from filter 'set local' callback"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SETLOCAL_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOENCODER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Filter present but encoding disabled"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOENCODER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTFILTER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Filter operation failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTFILTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Group related errors */
+assert(H5E_CANTOPENOBJ_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't open object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTOPENOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCLOSEOBJ_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't close object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCLOSEOBJ_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_COMPLEN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Name component is too long"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_COMPLEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PATH_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Problem with path to object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PATH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* No error */
+assert(H5E_NONE_MINOR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "No error"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NONE_MINOR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Plugin errors */
+assert(H5E_OPENERROR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't open directory or file"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_OPENERROR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* File accessibilty errors */
+assert(H5E_FILEEXISTS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File already exists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FILEEXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_FILEOPEN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File already open"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_FILEOPEN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCREATE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to create file"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCREATE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTOPENFILE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to open file"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTOPENFILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCLOSEFILE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to close file"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCLOSEFILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOTHDF5_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Not an HDF5 file"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOTHDF5_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADFILE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad file ID accessed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADFILE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_TRUNCATED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File has been truncated"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_TRUNCATED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_MOUNT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "File mount error"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_MOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Object atom related errors */
+assert(H5E_BADATOM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find atom information (already closed?)"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADATOM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADGROUP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to find ID group information"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADGROUP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREGISTER_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to register new atom"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREGISTER_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTINC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to increment reference count"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTINC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTDEC_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decrement reference count"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTDEC_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOIDS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Out of IDs for group"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOIDS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Cache related errors */
+assert(H5E_CANTFLUSH_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to flush data from cache"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTFLUSH_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSERIALIZE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to serialize data from cache"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSERIALIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTLOAD_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to load metadata into cache"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTLOAD_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_PROTECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Protected metadata error"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_PROTECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOTCACHED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Metadata not currently cached"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOTCACHED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_SYSTEM_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Internal error detected"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_SYSTEM_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTINS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to insert metadata into cache"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTINS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTPROTECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to protect metadata"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTPROTECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUNPROTECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to unprotect metadata"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUNPROTECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTPIN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to pin cache entry"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTPIN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTUNPIN_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to un-pin cache entry"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTUNPIN_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTMARKDIRTY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to mark a pinned entry as dirty"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMARKDIRTY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTDIRTY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to mark metadata as dirty"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTDIRTY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTEXPUNGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to expunge a metadata cache entry"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTEXPUNGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRESIZE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to resize a metadata cache entry"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRESIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Link related errors */
+assert(H5E_TRAVERSE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Link traversal failure"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_TRAVERSE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NLINKS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Too many soft links in path"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NLINKS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_NOTREGISTERED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Link class not registered"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOTREGISTERED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTMOVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSORT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't sort objects"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSORT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Parallel MPI errors */
+assert(H5E_MPI_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Some MPI function failed"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_MPI_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_MPIERRSTR_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "MPI Error String"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_MPIERRSTR_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTRECV_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't receive data"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTRECV_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Dataspace errors */
+assert(H5E_CANTCLIP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't clip hyperslab region"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCLIP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCOUNT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't count elements"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCOUNT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSELECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't select hyperslab"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTNEXT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't move to next iterator location"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTNEXT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADSELECT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Invalid selection"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADSELECT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTCOMPARE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't compare objects"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCOMPARE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Argument errors */
+assert(H5E_UNINITIALIZED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Information is uinitialized"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_UNINITIALIZED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_UNSUPPORTED_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Feature is unsupported"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_UNSUPPORTED_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADTYPE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Inappropriate type"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADTYPE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADRANGE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Out of range"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADRANGE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADVALUE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADVALUE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* B-tree related errors */
+assert(H5E_NOTFOUND_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object not found"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_NOTFOUND_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_EXISTS_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Object already exists"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_EXISTS_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTENCODE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to encode value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTENCODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTDECODE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to decode value"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTDECODE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSPLIT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to split node"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSPLIT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREDISTRIBUTE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to redistribute records"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREDISTRIBUTE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTSWAP_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to swap records"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTSWAP_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTINSERT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to insert object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTINSERT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTLIST_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to list node"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTLIST_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTMODIFY_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to modify record"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTMODIFY_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_CANTREMOVE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Unable to remove object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTREMOVE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+/* Datatype conversion errors */
+assert(H5E_CANTCONVERT_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Can't convert datatypes"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_CANTCONVERT_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+assert(H5E_BADSIZE_g==(-1));
+if((msg = H5E_create_msg(cls, H5E_MINOR, "Bad size for object"))==NULL)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, "error message initialization failed")
+if((H5E_BADSIZE_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)
+ HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, "can't register error message")
+
+#endif /* H5Einit_H */
diff --git a/Resources/windows-libs/HDF5/include/H5EnumType.h b/Resources/windows-libs/HDF5/include/H5EnumType.h
new file mode 100644
index 0000000000000000000000000000000000000000..fe36e8b5ba715687866e112e6c555e05a33fef95
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5EnumType.h
@@ -0,0 +1,78 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5EnumType_H
+#define __H5EnumType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class EnumType operates on HDF5 enum datatypes.
+class H5_DLLCPP EnumType : public DataType {
+
+ public:
+ // Creates an empty enumeration datatype based on a native signed
+ // integer type, whose size is given by size.
+ EnumType( size_t size );
+
+ // Gets the enum datatype of the specified dataset
+ EnumType( const DataSet& dataset ); // H5Dget_type
+
+ // Creates a new enum datatype based on an integer datatype
+ EnumType( const IntType& data_type ); // H5Tenum_create
+
+ // Returns the number of members in this enumeration datatype.
+ int getNmembers () const;
+
+ // Returns the index of a member in this enumeration data type.
+ int getMemberIndex(const char* name) const;
+ int getMemberIndex(const H5std_string& name) const;
+
+ // Returns the value of an enumeration datatype member
+ void getMemberValue( unsigned memb_no, void *value ) const;
+
+ // Inserts a new member to this enumeration type.
+ void insert( const char* name, void *value ) const;
+ void insert( const H5std_string& name, void *value ) const;
+
+ // Returns the symbol name corresponding to a specified member
+ // of this enumeration datatype.
+ H5std_string nameOf( void *value, size_t size ) const;
+
+ // Returns the value corresponding to a specified member of this
+ // enumeration datatype.
+ void valueOf( const char* name, void *value ) const;
+ void valueOf( const H5std_string& name, void *value ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("EnumType"); }
+
+ // Default constructor
+ EnumType();
+
+ // Creates an enumeration datatype using an existing id
+ EnumType( const hid_t existing_id );
+
+ // Copy constructor: makes a copy of the original EnumType object.
+ EnumType( const EnumType& original );
+
+ virtual ~EnumType();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5EnumType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Epkg.h b/Resources/windows-libs/HDF5/include/H5Epkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..bfaaf9dc243055b993cf2b62879a04ed073e0751
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Epkg.h
@@ -0,0 +1,151 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Wednesday, April 11, 2007
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5E package. Source files outside the H5E package should
+ * include H5Eprivate.h instead.
+ */
+#ifndef H5E_PACKAGE
+#error "Do not include this file outside the H5E package!"
+#endif
+
+#ifndef _H5Epkg_H
+#define _H5Epkg_H
+
+/* Get package's private header */
+#include "H5Eprivate.h"
+
+/* Other private headers needed by this file */
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Amount to indent each error */
+#define H5E_INDENT 2
+
+/* Number of slots in an error stack */
+#define H5E_NSLOTS 32
+
+#ifdef H5_HAVE_THREADSAFE
+/*
+ * The per-thread error stack. pthread_once() initializes a special
+ * key that will be used by all threads to create a stack specific to
+ * each thread individually. The association of stacks to threads will
+ * be handled by the pthread library.
+ *
+ * In order for this macro to work, H5E_get_my_stack() must be preceeded
+ * by "H5E_t *estack =".
+ */
+#define H5E_get_my_stack() H5E_get_stack()
+#else /* H5_HAVE_THREADSAFE */
+/*
+ * The current error stack.
+ */
+#define H5E_get_my_stack() (H5E_stack_g + 0)
+#endif /* H5_HAVE_THREADSAFE */
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Some syntactic sugar to make the compiler happy with two different kinds of callbacks */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+typedef struct {
+ unsigned vers; /* Which version callback to use */
+ hbool_t is_default; /* If the printing function is the library's own. */
+ H5E_auto1_t func1; /* Old-style callback, NO error stack param. */
+ H5E_auto2_t func2; /* New-style callback, with error stack param. */
+ H5E_auto1_t func1_default; /* The saved library's default function - old style. */
+ H5E_auto2_t func2_default; /* The saved library's default function - new style. */
+} H5E_auto_op_t;
+#else /* H5_NO_DEPRECATED_SYMBOLS */
+typedef struct {
+ H5E_auto_t func2; /* Only the new style callback function is available. */
+} H5E_auto_op_t;
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+/* Some syntactic sugar to make the compiler happy with two different kinds of callbacks */
+typedef struct {
+ unsigned vers; /* Which version callback to use */
+ union {
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ H5E_walk1_t func1; /* Old-style callback, NO error stack param. */
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+ H5E_walk2_t func2; /* New-style callback, with error stack param. */
+ }u;
+} H5E_walk_op_t;
+
+/* Error class */
+typedef struct H5E_cls_t {
+ char *cls_name; /* Name of error class */
+ char *lib_name; /* Name of library within class */
+ char *lib_vers; /* Version of library */
+} H5E_cls_t;
+
+/* Major or minor message */
+typedef struct H5E_msg_t {
+ char *msg; /* Message for error */
+ H5E_type_t type; /* Type of error (major or minor) */
+ H5E_cls_t *cls; /* Which error class this message belongs to */
+} H5E_msg_t;
+
+/* Error stack */
+struct H5E_t {
+ size_t nused; /* Num slots currently used in stack */
+ H5E_error2_t slot[H5E_NSLOTS]; /* Array of error records */
+ H5E_auto_op_t auto_op; /* Operator for 'automatic' error reporting */
+ void *auto_data; /* Callback data for 'automatic error reporting */
+};
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+#ifndef H5_HAVE_THREADSAFE
+/*
+ * The current error stack.
+ */
+H5_DLLVAR H5E_t H5E_stack_g[1];
+#endif /* H5_HAVE_THREADSAFE */
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+H5_DLL herr_t H5E__term_deprec_interface(void);
+#ifdef H5_HAVE_THREADSAFE
+H5_DLL H5E_t *H5E_get_stack(void);
+#endif /* H5_HAVE_THREADSAFE */
+H5_DLL ssize_t H5E_get_msg(const H5E_msg_t *msg_ptr, H5E_type_t *type,
+ char *msg, size_t size);
+H5_DLL herr_t H5E_print(const H5E_t *estack, FILE *stream, hbool_t bk_compat);
+H5_DLL herr_t H5E_walk(const H5E_t *estack, H5E_direction_t direction,
+ const H5E_walk_op_t *op, void *client_data);
+H5_DLL herr_t H5E_get_auto(const H5E_t *estack, H5E_auto_op_t *op,
+ void **client_data);
+H5_DLL herr_t H5E_set_auto(H5E_t *estack, const H5E_auto_op_t *op,
+ void *client_data);
+H5_DLL herr_t H5E_pop(H5E_t *err_stack, size_t count);
+
+#endif /* _H5Epkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Epubgen.h b/Resources/windows-libs/HDF5/include/H5Epubgen.h
new file mode 100644
index 0000000000000000000000000000000000000000..75eca0b99f0149acc9ca5369426cd6c324f1decf
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Epubgen.h
@@ -0,0 +1,368 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_err -- do not edit */
+/* Add new errors to H5err.txt file */
+
+
+#ifndef _H5Epubgen_H
+#define _H5Epubgen_H
+
+/*********************/
+/* Major error codes */
+/*********************/
+
+#define H5E_DATASET (H5OPEN H5E_DATASET_g)
+#define H5E_FUNC (H5OPEN H5E_FUNC_g)
+#define H5E_STORAGE (H5OPEN H5E_STORAGE_g)
+#define H5E_FILE (H5OPEN H5E_FILE_g)
+#define H5E_SOHM (H5OPEN H5E_SOHM_g)
+#define H5E_SYM (H5OPEN H5E_SYM_g)
+#define H5E_PLUGIN (H5OPEN H5E_PLUGIN_g)
+#define H5E_VFL (H5OPEN H5E_VFL_g)
+#define H5E_INTERNAL (H5OPEN H5E_INTERNAL_g)
+#define H5E_BTREE (H5OPEN H5E_BTREE_g)
+#define H5E_REFERENCE (H5OPEN H5E_REFERENCE_g)
+#define H5E_DATASPACE (H5OPEN H5E_DATASPACE_g)
+#define H5E_RESOURCE (H5OPEN H5E_RESOURCE_g)
+#define H5E_PLIST (H5OPEN H5E_PLIST_g)
+#define H5E_LINK (H5OPEN H5E_LINK_g)
+#define H5E_DATATYPE (H5OPEN H5E_DATATYPE_g)
+#define H5E_RS (H5OPEN H5E_RS_g)
+#define H5E_HEAP (H5OPEN H5E_HEAP_g)
+#define H5E_OHDR (H5OPEN H5E_OHDR_g)
+#define H5E_ATOM (H5OPEN H5E_ATOM_g)
+#define H5E_ATTR (H5OPEN H5E_ATTR_g)
+#define H5E_NONE_MAJOR (H5OPEN H5E_NONE_MAJOR_g)
+#define H5E_IO (H5OPEN H5E_IO_g)
+#define H5E_SLIST (H5OPEN H5E_SLIST_g)
+#define H5E_EFL (H5OPEN H5E_EFL_g)
+#define H5E_TST (H5OPEN H5E_TST_g)
+#define H5E_ARGS (H5OPEN H5E_ARGS_g)
+#define H5E_ERROR (H5OPEN H5E_ERROR_g)
+#define H5E_PLINE (H5OPEN H5E_PLINE_g)
+#define H5E_FSPACE (H5OPEN H5E_FSPACE_g)
+#define H5E_CACHE (H5OPEN H5E_CACHE_g)
+H5_DLLVAR hid_t H5E_DATASET_g; /* Dataset */
+H5_DLLVAR hid_t H5E_FUNC_g; /* Function entry/exit */
+H5_DLLVAR hid_t H5E_STORAGE_g; /* Data storage */
+H5_DLLVAR hid_t H5E_FILE_g; /* File accessibilty */
+H5_DLLVAR hid_t H5E_SOHM_g; /* Shared Object Header Messages */
+H5_DLLVAR hid_t H5E_SYM_g; /* Symbol table */
+H5_DLLVAR hid_t H5E_PLUGIN_g; /* Plugin for dynamically loaded library */
+H5_DLLVAR hid_t H5E_VFL_g; /* Virtual File Layer */
+H5_DLLVAR hid_t H5E_INTERNAL_g; /* Internal error (too specific to document in detail) */
+H5_DLLVAR hid_t H5E_BTREE_g; /* B-Tree node */
+H5_DLLVAR hid_t H5E_REFERENCE_g; /* References */
+H5_DLLVAR hid_t H5E_DATASPACE_g; /* Dataspace */
+H5_DLLVAR hid_t H5E_RESOURCE_g; /* Resource unavailable */
+H5_DLLVAR hid_t H5E_PLIST_g; /* Property lists */
+H5_DLLVAR hid_t H5E_LINK_g; /* Links */
+H5_DLLVAR hid_t H5E_DATATYPE_g; /* Datatype */
+H5_DLLVAR hid_t H5E_RS_g; /* Reference Counted Strings */
+H5_DLLVAR hid_t H5E_HEAP_g; /* Heap */
+H5_DLLVAR hid_t H5E_OHDR_g; /* Object header */
+H5_DLLVAR hid_t H5E_ATOM_g; /* Object atom */
+H5_DLLVAR hid_t H5E_ATTR_g; /* Attribute */
+H5_DLLVAR hid_t H5E_NONE_MAJOR_g; /* No error */
+H5_DLLVAR hid_t H5E_IO_g; /* Low-level I/O */
+H5_DLLVAR hid_t H5E_SLIST_g; /* Skip Lists */
+H5_DLLVAR hid_t H5E_EFL_g; /* External file list */
+H5_DLLVAR hid_t H5E_TST_g; /* Ternary Search Trees */
+H5_DLLVAR hid_t H5E_ARGS_g; /* Invalid arguments to routine */
+H5_DLLVAR hid_t H5E_ERROR_g; /* Error API */
+H5_DLLVAR hid_t H5E_PLINE_g; /* Data filters */
+H5_DLLVAR hid_t H5E_FSPACE_g; /* Free Space Manager */
+H5_DLLVAR hid_t H5E_CACHE_g; /* Object cache */
+
+/*********************/
+/* Minor error codes */
+/*********************/
+
+/* Generic low-level file I/O errors */
+#define H5E_SEEKERROR (H5OPEN H5E_SEEKERROR_g)
+#define H5E_READERROR (H5OPEN H5E_READERROR_g)
+#define H5E_WRITEERROR (H5OPEN H5E_WRITEERROR_g)
+#define H5E_CLOSEERROR (H5OPEN H5E_CLOSEERROR_g)
+#define H5E_OVERFLOW (H5OPEN H5E_OVERFLOW_g)
+#define H5E_FCNTL (H5OPEN H5E_FCNTL_g)
+H5_DLLVAR hid_t H5E_SEEKERROR_g; /* Seek failed */
+H5_DLLVAR hid_t H5E_READERROR_g; /* Read failed */
+H5_DLLVAR hid_t H5E_WRITEERROR_g; /* Write failed */
+H5_DLLVAR hid_t H5E_CLOSEERROR_g; /* Close failed */
+H5_DLLVAR hid_t H5E_OVERFLOW_g; /* Address overflowed */
+H5_DLLVAR hid_t H5E_FCNTL_g; /* File control (fcntl) failed */
+
+/* Resource errors */
+#define H5E_NOSPACE (H5OPEN H5E_NOSPACE_g)
+#define H5E_CANTALLOC (H5OPEN H5E_CANTALLOC_g)
+#define H5E_CANTCOPY (H5OPEN H5E_CANTCOPY_g)
+#define H5E_CANTFREE (H5OPEN H5E_CANTFREE_g)
+#define H5E_ALREADYEXISTS (H5OPEN H5E_ALREADYEXISTS_g)
+#define H5E_CANTLOCK (H5OPEN H5E_CANTLOCK_g)
+#define H5E_CANTUNLOCK (H5OPEN H5E_CANTUNLOCK_g)
+#define H5E_CANTGC (H5OPEN H5E_CANTGC_g)
+#define H5E_CANTGETSIZE (H5OPEN H5E_CANTGETSIZE_g)
+#define H5E_OBJOPEN (H5OPEN H5E_OBJOPEN_g)
+H5_DLLVAR hid_t H5E_NOSPACE_g; /* No space available for allocation */
+H5_DLLVAR hid_t H5E_CANTALLOC_g; /* Can't allocate space */
+H5_DLLVAR hid_t H5E_CANTCOPY_g; /* Unable to copy object */
+H5_DLLVAR hid_t H5E_CANTFREE_g; /* Unable to free object */
+H5_DLLVAR hid_t H5E_ALREADYEXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTLOCK_g; /* Unable to lock object */
+H5_DLLVAR hid_t H5E_CANTUNLOCK_g; /* Unable to unlock object */
+H5_DLLVAR hid_t H5E_CANTGC_g; /* Unable to garbage collect */
+H5_DLLVAR hid_t H5E_CANTGETSIZE_g; /* Unable to compute size */
+H5_DLLVAR hid_t H5E_OBJOPEN_g; /* Object is already open */
+
+/* Heap errors */
+#define H5E_CANTRESTORE (H5OPEN H5E_CANTRESTORE_g)
+#define H5E_CANTCOMPUTE (H5OPEN H5E_CANTCOMPUTE_g)
+#define H5E_CANTEXTEND (H5OPEN H5E_CANTEXTEND_g)
+#define H5E_CANTATTACH (H5OPEN H5E_CANTATTACH_g)
+#define H5E_CANTUPDATE (H5OPEN H5E_CANTUPDATE_g)
+#define H5E_CANTOPERATE (H5OPEN H5E_CANTOPERATE_g)
+H5_DLLVAR hid_t H5E_CANTRESTORE_g; /* Can't restore condition */
+H5_DLLVAR hid_t H5E_CANTCOMPUTE_g; /* Can't compute value */
+H5_DLLVAR hid_t H5E_CANTEXTEND_g; /* Can't extend heap's space */
+H5_DLLVAR hid_t H5E_CANTATTACH_g; /* Can't attach object */
+H5_DLLVAR hid_t H5E_CANTUPDATE_g; /* Can't update object */
+H5_DLLVAR hid_t H5E_CANTOPERATE_g; /* Can't operate on object */
+
+/* Function entry/exit interface errors */
+#define H5E_CANTINIT (H5OPEN H5E_CANTINIT_g)
+#define H5E_ALREADYINIT (H5OPEN H5E_ALREADYINIT_g)
+#define H5E_CANTRELEASE (H5OPEN H5E_CANTRELEASE_g)
+H5_DLLVAR hid_t H5E_CANTINIT_g; /* Unable to initialize object */
+H5_DLLVAR hid_t H5E_ALREADYINIT_g; /* Object already initialized */
+H5_DLLVAR hid_t H5E_CANTRELEASE_g; /* Unable to release object */
+
+/* Property list errors */
+#define H5E_CANTGET (H5OPEN H5E_CANTGET_g)
+#define H5E_CANTSET (H5OPEN H5E_CANTSET_g)
+#define H5E_DUPCLASS (H5OPEN H5E_DUPCLASS_g)
+#define H5E_SETDISALLOWED (H5OPEN H5E_SETDISALLOWED_g)
+H5_DLLVAR hid_t H5E_CANTGET_g; /* Can't get value */
+H5_DLLVAR hid_t H5E_CANTSET_g; /* Can't set value */
+H5_DLLVAR hid_t H5E_DUPCLASS_g; /* Duplicate class name in parent class */
+H5_DLLVAR hid_t H5E_SETDISALLOWED_g; /* Disallowed operation */
+
+/* Free space errors */
+#define H5E_CANTMERGE (H5OPEN H5E_CANTMERGE_g)
+#define H5E_CANTREVIVE (H5OPEN H5E_CANTREVIVE_g)
+#define H5E_CANTSHRINK (H5OPEN H5E_CANTSHRINK_g)
+H5_DLLVAR hid_t H5E_CANTMERGE_g; /* Can't merge objects */
+H5_DLLVAR hid_t H5E_CANTREVIVE_g; /* Can't revive object */
+H5_DLLVAR hid_t H5E_CANTSHRINK_g; /* Can't shrink container */
+
+/* Object header related errors */
+#define H5E_LINKCOUNT (H5OPEN H5E_LINKCOUNT_g)
+#define H5E_VERSION (H5OPEN H5E_VERSION_g)
+#define H5E_ALIGNMENT (H5OPEN H5E_ALIGNMENT_g)
+#define H5E_BADMESG (H5OPEN H5E_BADMESG_g)
+#define H5E_CANTDELETE (H5OPEN H5E_CANTDELETE_g)
+#define H5E_BADITER (H5OPEN H5E_BADITER_g)
+#define H5E_CANTPACK (H5OPEN H5E_CANTPACK_g)
+#define H5E_CANTRESET (H5OPEN H5E_CANTRESET_g)
+#define H5E_CANTRENAME (H5OPEN H5E_CANTRENAME_g)
+H5_DLLVAR hid_t H5E_LINKCOUNT_g; /* Bad object header link count */
+H5_DLLVAR hid_t H5E_VERSION_g; /* Wrong version number */
+H5_DLLVAR hid_t H5E_ALIGNMENT_g; /* Alignment error */
+H5_DLLVAR hid_t H5E_BADMESG_g; /* Unrecognized message */
+H5_DLLVAR hid_t H5E_CANTDELETE_g; /* Can't delete message */
+H5_DLLVAR hid_t H5E_BADITER_g; /* Iteration failed */
+H5_DLLVAR hid_t H5E_CANTPACK_g; /* Can't pack messages */
+H5_DLLVAR hid_t H5E_CANTRESET_g; /* Can't reset object */
+H5_DLLVAR hid_t H5E_CANTRENAME_g; /* Unable to rename object */
+
+/* System level errors */
+#define H5E_SYSERRSTR (H5OPEN H5E_SYSERRSTR_g)
+H5_DLLVAR hid_t H5E_SYSERRSTR_g; /* System error message */
+
+/* I/O pipeline errors */
+#define H5E_NOFILTER (H5OPEN H5E_NOFILTER_g)
+#define H5E_CALLBACK (H5OPEN H5E_CALLBACK_g)
+#define H5E_CANAPPLY (H5OPEN H5E_CANAPPLY_g)
+#define H5E_SETLOCAL (H5OPEN H5E_SETLOCAL_g)
+#define H5E_NOENCODER (H5OPEN H5E_NOENCODER_g)
+#define H5E_CANTFILTER (H5OPEN H5E_CANTFILTER_g)
+H5_DLLVAR hid_t H5E_NOFILTER_g; /* Requested filter is not available */
+H5_DLLVAR hid_t H5E_CALLBACK_g; /* Callback failed */
+H5_DLLVAR hid_t H5E_CANAPPLY_g; /* Error from filter 'can apply' callback */
+H5_DLLVAR hid_t H5E_SETLOCAL_g; /* Error from filter 'set local' callback */
+H5_DLLVAR hid_t H5E_NOENCODER_g; /* Filter present but encoding disabled */
+H5_DLLVAR hid_t H5E_CANTFILTER_g; /* Filter operation failed */
+
+/* Group related errors */
+#define H5E_CANTOPENOBJ (H5OPEN H5E_CANTOPENOBJ_g)
+#define H5E_CANTCLOSEOBJ (H5OPEN H5E_CANTCLOSEOBJ_g)
+#define H5E_COMPLEN (H5OPEN H5E_COMPLEN_g)
+#define H5E_PATH (H5OPEN H5E_PATH_g)
+H5_DLLVAR hid_t H5E_CANTOPENOBJ_g; /* Can't open object */
+H5_DLLVAR hid_t H5E_CANTCLOSEOBJ_g; /* Can't close object */
+H5_DLLVAR hid_t H5E_COMPLEN_g; /* Name component is too long */
+H5_DLLVAR hid_t H5E_PATH_g; /* Problem with path to object */
+
+/* No error */
+#define H5E_NONE_MINOR (H5OPEN H5E_NONE_MINOR_g)
+H5_DLLVAR hid_t H5E_NONE_MINOR_g; /* No error */
+
+/* Plugin errors */
+#define H5E_OPENERROR (H5OPEN H5E_OPENERROR_g)
+H5_DLLVAR hid_t H5E_OPENERROR_g; /* Can't open directory or file */
+
+/* File accessibilty errors */
+#define H5E_FILEEXISTS (H5OPEN H5E_FILEEXISTS_g)
+#define H5E_FILEOPEN (H5OPEN H5E_FILEOPEN_g)
+#define H5E_CANTCREATE (H5OPEN H5E_CANTCREATE_g)
+#define H5E_CANTOPENFILE (H5OPEN H5E_CANTOPENFILE_g)
+#define H5E_CANTCLOSEFILE (H5OPEN H5E_CANTCLOSEFILE_g)
+#define H5E_NOTHDF5 (H5OPEN H5E_NOTHDF5_g)
+#define H5E_BADFILE (H5OPEN H5E_BADFILE_g)
+#define H5E_TRUNCATED (H5OPEN H5E_TRUNCATED_g)
+#define H5E_MOUNT (H5OPEN H5E_MOUNT_g)
+H5_DLLVAR hid_t H5E_FILEEXISTS_g; /* File already exists */
+H5_DLLVAR hid_t H5E_FILEOPEN_g; /* File already open */
+H5_DLLVAR hid_t H5E_CANTCREATE_g; /* Unable to create file */
+H5_DLLVAR hid_t H5E_CANTOPENFILE_g; /* Unable to open file */
+H5_DLLVAR hid_t H5E_CANTCLOSEFILE_g; /* Unable to close file */
+H5_DLLVAR hid_t H5E_NOTHDF5_g; /* Not an HDF5 file */
+H5_DLLVAR hid_t H5E_BADFILE_g; /* Bad file ID accessed */
+H5_DLLVAR hid_t H5E_TRUNCATED_g; /* File has been truncated */
+H5_DLLVAR hid_t H5E_MOUNT_g; /* File mount error */
+
+/* Object atom related errors */
+#define H5E_BADATOM (H5OPEN H5E_BADATOM_g)
+#define H5E_BADGROUP (H5OPEN H5E_BADGROUP_g)
+#define H5E_CANTREGISTER (H5OPEN H5E_CANTREGISTER_g)
+#define H5E_CANTINC (H5OPEN H5E_CANTINC_g)
+#define H5E_CANTDEC (H5OPEN H5E_CANTDEC_g)
+#define H5E_NOIDS (H5OPEN H5E_NOIDS_g)
+H5_DLLVAR hid_t H5E_BADATOM_g; /* Unable to find atom information (already closed?) */
+H5_DLLVAR hid_t H5E_BADGROUP_g; /* Unable to find ID group information */
+H5_DLLVAR hid_t H5E_CANTREGISTER_g; /* Unable to register new atom */
+H5_DLLVAR hid_t H5E_CANTINC_g; /* Unable to increment reference count */
+H5_DLLVAR hid_t H5E_CANTDEC_g; /* Unable to decrement reference count */
+H5_DLLVAR hid_t H5E_NOIDS_g; /* Out of IDs for group */
+
+/* Cache related errors */
+#define H5E_CANTFLUSH (H5OPEN H5E_CANTFLUSH_g)
+#define H5E_CANTSERIALIZE (H5OPEN H5E_CANTSERIALIZE_g)
+#define H5E_CANTLOAD (H5OPEN H5E_CANTLOAD_g)
+#define H5E_PROTECT (H5OPEN H5E_PROTECT_g)
+#define H5E_NOTCACHED (H5OPEN H5E_NOTCACHED_g)
+#define H5E_SYSTEM (H5OPEN H5E_SYSTEM_g)
+#define H5E_CANTINS (H5OPEN H5E_CANTINS_g)
+#define H5E_CANTPROTECT (H5OPEN H5E_CANTPROTECT_g)
+#define H5E_CANTUNPROTECT (H5OPEN H5E_CANTUNPROTECT_g)
+#define H5E_CANTPIN (H5OPEN H5E_CANTPIN_g)
+#define H5E_CANTUNPIN (H5OPEN H5E_CANTUNPIN_g)
+#define H5E_CANTMARKDIRTY (H5OPEN H5E_CANTMARKDIRTY_g)
+#define H5E_CANTDIRTY (H5OPEN H5E_CANTDIRTY_g)
+#define H5E_CANTEXPUNGE (H5OPEN H5E_CANTEXPUNGE_g)
+#define H5E_CANTRESIZE (H5OPEN H5E_CANTRESIZE_g)
+H5_DLLVAR hid_t H5E_CANTFLUSH_g; /* Unable to flush data from cache */
+H5_DLLVAR hid_t H5E_CANTSERIALIZE_g; /* Unable to serialize data from cache */
+H5_DLLVAR hid_t H5E_CANTLOAD_g; /* Unable to load metadata into cache */
+H5_DLLVAR hid_t H5E_PROTECT_g; /* Protected metadata error */
+H5_DLLVAR hid_t H5E_NOTCACHED_g; /* Metadata not currently cached */
+H5_DLLVAR hid_t H5E_SYSTEM_g; /* Internal error detected */
+H5_DLLVAR hid_t H5E_CANTINS_g; /* Unable to insert metadata into cache */
+H5_DLLVAR hid_t H5E_CANTPROTECT_g; /* Unable to protect metadata */
+H5_DLLVAR hid_t H5E_CANTUNPROTECT_g; /* Unable to unprotect metadata */
+H5_DLLVAR hid_t H5E_CANTPIN_g; /* Unable to pin cache entry */
+H5_DLLVAR hid_t H5E_CANTUNPIN_g; /* Unable to un-pin cache entry */
+H5_DLLVAR hid_t H5E_CANTMARKDIRTY_g; /* Unable to mark a pinned entry as dirty */
+H5_DLLVAR hid_t H5E_CANTDIRTY_g; /* Unable to mark metadata as dirty */
+H5_DLLVAR hid_t H5E_CANTEXPUNGE_g; /* Unable to expunge a metadata cache entry */
+H5_DLLVAR hid_t H5E_CANTRESIZE_g; /* Unable to resize a metadata cache entry */
+
+/* Link related errors */
+#define H5E_TRAVERSE (H5OPEN H5E_TRAVERSE_g)
+#define H5E_NLINKS (H5OPEN H5E_NLINKS_g)
+#define H5E_NOTREGISTERED (H5OPEN H5E_NOTREGISTERED_g)
+#define H5E_CANTMOVE (H5OPEN H5E_CANTMOVE_g)
+#define H5E_CANTSORT (H5OPEN H5E_CANTSORT_g)
+H5_DLLVAR hid_t H5E_TRAVERSE_g; /* Link traversal failure */
+H5_DLLVAR hid_t H5E_NLINKS_g; /* Too many soft links in path */
+H5_DLLVAR hid_t H5E_NOTREGISTERED_g; /* Link class not registered */
+H5_DLLVAR hid_t H5E_CANTMOVE_g; /* Can't move object */
+H5_DLLVAR hid_t H5E_CANTSORT_g; /* Can't sort objects */
+
+/* Parallel MPI errors */
+#define H5E_MPI (H5OPEN H5E_MPI_g)
+#define H5E_MPIERRSTR (H5OPEN H5E_MPIERRSTR_g)
+#define H5E_CANTRECV (H5OPEN H5E_CANTRECV_g)
+H5_DLLVAR hid_t H5E_MPI_g; /* Some MPI function failed */
+H5_DLLVAR hid_t H5E_MPIERRSTR_g; /* MPI Error String */
+H5_DLLVAR hid_t H5E_CANTRECV_g; /* Can't receive data */
+
+/* Dataspace errors */
+#define H5E_CANTCLIP (H5OPEN H5E_CANTCLIP_g)
+#define H5E_CANTCOUNT (H5OPEN H5E_CANTCOUNT_g)
+#define H5E_CANTSELECT (H5OPEN H5E_CANTSELECT_g)
+#define H5E_CANTNEXT (H5OPEN H5E_CANTNEXT_g)
+#define H5E_BADSELECT (H5OPEN H5E_BADSELECT_g)
+#define H5E_CANTCOMPARE (H5OPEN H5E_CANTCOMPARE_g)
+H5_DLLVAR hid_t H5E_CANTCLIP_g; /* Can't clip hyperslab region */
+H5_DLLVAR hid_t H5E_CANTCOUNT_g; /* Can't count elements */
+H5_DLLVAR hid_t H5E_CANTSELECT_g; /* Can't select hyperslab */
+H5_DLLVAR hid_t H5E_CANTNEXT_g; /* Can't move to next iterator location */
+H5_DLLVAR hid_t H5E_BADSELECT_g; /* Invalid selection */
+H5_DLLVAR hid_t H5E_CANTCOMPARE_g; /* Can't compare objects */
+
+/* Argument errors */
+#define H5E_UNINITIALIZED (H5OPEN H5E_UNINITIALIZED_g)
+#define H5E_UNSUPPORTED (H5OPEN H5E_UNSUPPORTED_g)
+#define H5E_BADTYPE (H5OPEN H5E_BADTYPE_g)
+#define H5E_BADRANGE (H5OPEN H5E_BADRANGE_g)
+#define H5E_BADVALUE (H5OPEN H5E_BADVALUE_g)
+H5_DLLVAR hid_t H5E_UNINITIALIZED_g; /* Information is uinitialized */
+H5_DLLVAR hid_t H5E_UNSUPPORTED_g; /* Feature is unsupported */
+H5_DLLVAR hid_t H5E_BADTYPE_g; /* Inappropriate type */
+H5_DLLVAR hid_t H5E_BADRANGE_g; /* Out of range */
+H5_DLLVAR hid_t H5E_BADVALUE_g; /* Bad value */
+
+/* B-tree related errors */
+#define H5E_NOTFOUND (H5OPEN H5E_NOTFOUND_g)
+#define H5E_EXISTS (H5OPEN H5E_EXISTS_g)
+#define H5E_CANTENCODE (H5OPEN H5E_CANTENCODE_g)
+#define H5E_CANTDECODE (H5OPEN H5E_CANTDECODE_g)
+#define H5E_CANTSPLIT (H5OPEN H5E_CANTSPLIT_g)
+#define H5E_CANTREDISTRIBUTE (H5OPEN H5E_CANTREDISTRIBUTE_g)
+#define H5E_CANTSWAP (H5OPEN H5E_CANTSWAP_g)
+#define H5E_CANTINSERT (H5OPEN H5E_CANTINSERT_g)
+#define H5E_CANTLIST (H5OPEN H5E_CANTLIST_g)
+#define H5E_CANTMODIFY (H5OPEN H5E_CANTMODIFY_g)
+#define H5E_CANTREMOVE (H5OPEN H5E_CANTREMOVE_g)
+H5_DLLVAR hid_t H5E_NOTFOUND_g; /* Object not found */
+H5_DLLVAR hid_t H5E_EXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTENCODE_g; /* Unable to encode value */
+H5_DLLVAR hid_t H5E_CANTDECODE_g; /* Unable to decode value */
+H5_DLLVAR hid_t H5E_CANTSPLIT_g; /* Unable to split node */
+H5_DLLVAR hid_t H5E_CANTREDISTRIBUTE_g; /* Unable to redistribute records */
+H5_DLLVAR hid_t H5E_CANTSWAP_g; /* Unable to swap records */
+H5_DLLVAR hid_t H5E_CANTINSERT_g; /* Unable to insert object */
+H5_DLLVAR hid_t H5E_CANTLIST_g; /* Unable to list node */
+H5_DLLVAR hid_t H5E_CANTMODIFY_g; /* Unable to modify record */
+H5_DLLVAR hid_t H5E_CANTREMOVE_g; /* Unable to remove object */
+
+/* Datatype conversion errors */
+#define H5E_CANTCONVERT (H5OPEN H5E_CANTCONVERT_g)
+#define H5E_BADSIZE (H5OPEN H5E_BADSIZE_g)
+H5_DLLVAR hid_t H5E_CANTCONVERT_g; /* Can't convert datatypes */
+H5_DLLVAR hid_t H5E_BADSIZE_g; /* Bad size for object */
+
+#endif /* H5Epubgen_H */
diff --git a/Resources/windows-libs/HDF5/include/H5Epublic.h b/Resources/windows-libs/HDF5/include/H5Epublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..932b8574b7e473e43fd4111ddcc3086b03234bd5
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Epublic.h
@@ -0,0 +1,228 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5E module.
+ */
+#ifndef _H5Epublic_H
+#define _H5Epublic_H
+
+#include <stdio.h> /*FILE arg of H5Eprint() */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/* Value for the default error stack */
+#define H5E_DEFAULT 0
+
+/* Different kinds of error information */
+typedef enum H5E_type_t {
+ H5E_MAJOR,
+ H5E_MINOR
+} H5E_type_t;
+
+/* Information about an error; element of error stack */
+typedef struct H5E_error2_t {
+ hid_t cls_id; /*class ID */
+ hid_t maj_num; /*major error ID */
+ hid_t min_num; /*minor error number */
+ unsigned line; /*line in file where error occurs */
+ const char *func_name; /*function in which error occurred */
+ const char *file_name; /*file in which error occurred */
+ const char *desc; /*optional supplied description */
+} H5E_error2_t;
+
+/* When this header is included from a private header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/* HDF5 error class */
+#define H5E_ERR_CLS (H5OPEN H5E_ERR_CLS_g)
+H5_DLLVAR hid_t H5E_ERR_CLS_g;
+
+/* Include the automatically generated public header information */
+/* (This includes the list of major and minor error codes for the library) */
+#include "H5Epubgen.h"
+
+/*
+ * One often needs to temporarily disable automatic error reporting when
+ * trying something that's likely or expected to fail. The code to try can
+ * be nested between calls to H5Eget_auto() and H5Eset_auto(), but it's
+ * easier just to use this macro like:
+ * H5E_BEGIN_TRY {
+ * ...stuff here that's likely to fail...
+ * } H5E_END_TRY;
+ *
+ * Warning: don't break, return, or longjmp() from the body of the loop or
+ * the error reporting won't be properly restored!
+ *
+ * These two macros still use the old API functions for backward compatibility
+ * purpose.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+#define H5E_BEGIN_TRY { \
+ unsigned H5E_saved_is_v2; \
+ union { \
+ H5E_auto1_t efunc1; \
+ H5E_auto2_t efunc2; \
+ } H5E_saved; \
+ void *H5E_saved_edata; \
+ \
+ (void)H5Eauto_is_v2(H5E_DEFAULT, &H5E_saved_is_v2); \
+ if(H5E_saved_is_v2) { \
+ (void)H5Eget_auto2(H5E_DEFAULT, &H5E_saved.efunc2, &H5E_saved_edata); \
+ (void)H5Eset_auto2(H5E_DEFAULT, NULL, NULL); \
+ } else { \
+ (void)H5Eget_auto1(&H5E_saved.efunc1, &H5E_saved_edata); \
+ (void)H5Eset_auto1(NULL, NULL); \
+ }
+
+#define H5E_END_TRY \
+ if(H5E_saved_is_v2) \
+ (void)H5Eset_auto2(H5E_DEFAULT, H5E_saved.efunc2, H5E_saved_edata); \
+ else \
+ (void)H5Eset_auto1(H5E_saved.efunc1, H5E_saved_edata); \
+}
+#else /* H5_NO_DEPRECATED_SYMBOLS */
+#define H5E_BEGIN_TRY { \
+ H5E_auto_t saved_efunc; \
+ void *H5E_saved_edata; \
+ \
+ (void)H5Eget_auto(H5E_DEFAULT, &saved_efunc, &H5E_saved_edata); \
+ (void)H5Eset_auto(H5E_DEFAULT, NULL, NULL);
+
+#define H5E_END_TRY \
+ (void)H5Eset_auto(H5E_DEFAULT, saved_efunc, H5E_saved_edata); \
+}
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+/*
+ * Public API Convenience Macros for Error reporting - Documented
+ */
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in */
+#define H5Epush_sim(func, cls, maj, min, str) H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str)
+
+/*
+ * Public API Convenience Macros for Error reporting - Undocumented
+ */
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in */
+/* And return after pushing error onto stack */
+#define H5Epush_ret(func, cls, maj, min, str, ret) { \
+ H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str); \
+ return(ret); \
+}
+
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in
+ * And goto a label after pushing error onto stack.
+ */
+#define H5Epush_goto(func, cls, maj, min, str, label) { \
+ H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str); \
+ goto label; \
+}
+
+/* Error stack traversal direction */
+typedef enum H5E_direction_t {
+ H5E_WALK_UPWARD = 0, /*begin deep, end at API function */
+ H5E_WALK_DOWNWARD = 1 /*begin at API function, end deep */
+} H5E_direction_t;
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Error stack traversal callback function pointers */
+typedef herr_t (*H5E_walk2_t)(unsigned n, const H5E_error2_t *err_desc,
+ void *client_data);
+typedef herr_t (*H5E_auto2_t)(hid_t estack, void *client_data);
+
+/* Public API functions */
+H5_DLL hid_t H5Eregister_class(const char *cls_name, const char *lib_name,
+ const char *version);
+H5_DLL herr_t H5Eunregister_class(hid_t class_id);
+H5_DLL herr_t H5Eclose_msg(hid_t err_id);
+H5_DLL hid_t H5Ecreate_msg(hid_t cls, H5E_type_t msg_type, const char *msg);
+H5_DLL hid_t H5Ecreate_stack(void);
+H5_DLL hid_t H5Eget_current_stack(void);
+H5_DLL herr_t H5Eclose_stack(hid_t stack_id);
+H5_DLL ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size);
+H5_DLL herr_t H5Eset_current_stack(hid_t err_stack_id);
+H5_DLL herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line,
+ hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...);
+H5_DLL herr_t H5Epop(hid_t err_stack, size_t count);
+H5_DLL herr_t H5Eprint2(hid_t err_stack, FILE *stream);
+H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func,
+ void *client_data);
+H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data);
+H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
+H5_DLL herr_t H5Eclear2(hid_t err_stack);
+H5_DLL herr_t H5Eauto_is_v2(hid_t err_stack, unsigned *is_stack);
+H5_DLL ssize_t H5Eget_msg(hid_t msg_id, H5E_type_t *type, char *msg,
+ size_t size);
+H5_DLL ssize_t H5Eget_num(hid_t error_stack_id);
+
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Typedefs */
+
+/* Alias major & minor error types to hid_t's, for compatibility with new
+ * error API in v1.8
+ */
+typedef hid_t H5E_major_t;
+typedef hid_t H5E_minor_t;
+
+/* Information about an error element of error stack. */
+typedef struct H5E_error1_t {
+ H5E_major_t maj_num; /*major error number */
+ H5E_minor_t min_num; /*minor error number */
+ const char *func_name; /*function in which error occurred */
+ const char *file_name; /*file in which error occurred */
+ unsigned line; /*line in file where error occurs */
+ const char *desc; /*optional supplied description */
+} H5E_error1_t;
+
+/* Error stack traversal callback function pointers */
+typedef herr_t (*H5E_walk1_t)(int n, H5E_error1_t *err_desc, void *client_data);
+typedef herr_t (*H5E_auto1_t)(void *client_data);
+
+/* Function prototypes */
+H5_DLL herr_t H5Eclear1(void);
+H5_DLL herr_t H5Eget_auto1(H5E_auto1_t *func, void **client_data);
+H5_DLL herr_t H5Epush1(const char *file, const char *func, unsigned line,
+ H5E_major_t maj, H5E_minor_t min, const char *str);
+H5_DLL herr_t H5Eprint1(FILE *stream);
+H5_DLL herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data);
+H5_DLL herr_t H5Ewalk1(H5E_direction_t direction, H5E_walk1_t func,
+ void *client_data);
+H5_DLL char *H5Eget_major(H5E_major_t maj);
+H5_DLL char *H5Eget_minor(H5E_minor_t min);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* end _H5Epublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Eterm.h b/Resources/windows-libs/HDF5/include/H5Eterm.h
new file mode 100644
index 0000000000000000000000000000000000000000..86902b8b65c4326576fa4b210ecb7341e1abf131
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Eterm.h
@@ -0,0 +1,218 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_err -- do not edit */
+/* Add new errors to H5err.txt file */
+
+
+#ifndef _H5Eterm_H
+#define _H5Eterm_H
+
+/* Reset major error IDs */
+
+H5E_DATASET_g=
+H5E_FUNC_g=
+H5E_STORAGE_g=
+H5E_FILE_g=
+H5E_SOHM_g=
+H5E_SYM_g=
+H5E_PLUGIN_g=
+H5E_VFL_g=
+H5E_INTERNAL_g=
+H5E_BTREE_g=
+H5E_REFERENCE_g=
+H5E_DATASPACE_g=
+H5E_RESOURCE_g=
+H5E_PLIST_g=
+H5E_LINK_g=
+H5E_DATATYPE_g=
+H5E_RS_g=
+H5E_HEAP_g=
+H5E_OHDR_g=
+H5E_ATOM_g=
+H5E_ATTR_g=
+H5E_NONE_MAJOR_g=
+H5E_IO_g=
+H5E_SLIST_g=
+H5E_EFL_g=
+H5E_TST_g=
+H5E_ARGS_g=
+H5E_ERROR_g=
+H5E_PLINE_g=
+H5E_FSPACE_g=
+H5E_CACHE_g= (-1);
+
+/* Reset minor error IDs */
+
+
+/* Generic low-level file I/O errors */
+H5E_SEEKERROR_g=
+H5E_READERROR_g=
+H5E_WRITEERROR_g=
+H5E_CLOSEERROR_g=
+H5E_OVERFLOW_g=
+H5E_FCNTL_g=
+
+/* Resource errors */
+H5E_NOSPACE_g=
+H5E_CANTALLOC_g=
+H5E_CANTCOPY_g=
+H5E_CANTFREE_g=
+H5E_ALREADYEXISTS_g=
+H5E_CANTLOCK_g=
+H5E_CANTUNLOCK_g=
+H5E_CANTGC_g=
+H5E_CANTGETSIZE_g=
+H5E_OBJOPEN_g=
+
+/* Heap errors */
+H5E_CANTRESTORE_g=
+H5E_CANTCOMPUTE_g=
+H5E_CANTEXTEND_g=
+H5E_CANTATTACH_g=
+H5E_CANTUPDATE_g=
+H5E_CANTOPERATE_g=
+
+/* Function entry/exit interface errors */
+H5E_CANTINIT_g=
+H5E_ALREADYINIT_g=
+H5E_CANTRELEASE_g=
+
+/* Property list errors */
+H5E_CANTGET_g=
+H5E_CANTSET_g=
+H5E_DUPCLASS_g=
+H5E_SETDISALLOWED_g=
+
+/* Free space errors */
+H5E_CANTMERGE_g=
+H5E_CANTREVIVE_g=
+H5E_CANTSHRINK_g=
+
+/* Object header related errors */
+H5E_LINKCOUNT_g=
+H5E_VERSION_g=
+H5E_ALIGNMENT_g=
+H5E_BADMESG_g=
+H5E_CANTDELETE_g=
+H5E_BADITER_g=
+H5E_CANTPACK_g=
+H5E_CANTRESET_g=
+H5E_CANTRENAME_g=
+
+/* System level errors */
+H5E_SYSERRSTR_g=
+
+/* I/O pipeline errors */
+H5E_NOFILTER_g=
+H5E_CALLBACK_g=
+H5E_CANAPPLY_g=
+H5E_SETLOCAL_g=
+H5E_NOENCODER_g=
+H5E_CANTFILTER_g=
+
+/* Group related errors */
+H5E_CANTOPENOBJ_g=
+H5E_CANTCLOSEOBJ_g=
+H5E_COMPLEN_g=
+H5E_PATH_g=
+
+/* No error */
+H5E_NONE_MINOR_g=
+
+/* Plugin errors */
+H5E_OPENERROR_g=
+
+/* File accessibilty errors */
+H5E_FILEEXISTS_g=
+H5E_FILEOPEN_g=
+H5E_CANTCREATE_g=
+H5E_CANTOPENFILE_g=
+H5E_CANTCLOSEFILE_g=
+H5E_NOTHDF5_g=
+H5E_BADFILE_g=
+H5E_TRUNCATED_g=
+H5E_MOUNT_g=
+
+/* Object atom related errors */
+H5E_BADATOM_g=
+H5E_BADGROUP_g=
+H5E_CANTREGISTER_g=
+H5E_CANTINC_g=
+H5E_CANTDEC_g=
+H5E_NOIDS_g=
+
+/* Cache related errors */
+H5E_CANTFLUSH_g=
+H5E_CANTSERIALIZE_g=
+H5E_CANTLOAD_g=
+H5E_PROTECT_g=
+H5E_NOTCACHED_g=
+H5E_SYSTEM_g=
+H5E_CANTINS_g=
+H5E_CANTPROTECT_g=
+H5E_CANTUNPROTECT_g=
+H5E_CANTPIN_g=
+H5E_CANTUNPIN_g=
+H5E_CANTMARKDIRTY_g=
+H5E_CANTDIRTY_g=
+H5E_CANTEXPUNGE_g=
+H5E_CANTRESIZE_g=
+
+/* Link related errors */
+H5E_TRAVERSE_g=
+H5E_NLINKS_g=
+H5E_NOTREGISTERED_g=
+H5E_CANTMOVE_g=
+H5E_CANTSORT_g=
+
+/* Parallel MPI errors */
+H5E_MPI_g=
+H5E_MPIERRSTR_g=
+H5E_CANTRECV_g=
+
+/* Dataspace errors */
+H5E_CANTCLIP_g=
+H5E_CANTCOUNT_g=
+H5E_CANTSELECT_g=
+H5E_CANTNEXT_g=
+H5E_BADSELECT_g=
+H5E_CANTCOMPARE_g=
+
+/* Argument errors */
+H5E_UNINITIALIZED_g=
+H5E_UNSUPPORTED_g=
+H5E_BADTYPE_g=
+H5E_BADRANGE_g=
+H5E_BADVALUE_g=
+
+/* B-tree related errors */
+H5E_NOTFOUND_g=
+H5E_EXISTS_g=
+H5E_CANTENCODE_g=
+H5E_CANTDECODE_g=
+H5E_CANTSPLIT_g=
+H5E_CANTREDISTRIBUTE_g=
+H5E_CANTSWAP_g=
+H5E_CANTINSERT_g=
+H5E_CANTLIST_g=
+H5E_CANTMODIFY_g=
+H5E_CANTREMOVE_g=
+
+/* Datatype conversion errors */
+H5E_CANTCONVERT_g=
+H5E_BADSIZE_g= (-1);
+
+#endif /* H5Eterm_H */
diff --git a/Resources/windows-libs/HDF5/include/H5Exception.h b/Resources/windows-libs/HDF5/include/H5Exception.h
new file mode 100644
index 0000000000000000000000000000000000000000..5373150f943da68ba4d8ec84ada5a459852d00fa
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Exception.h
@@ -0,0 +1,178 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Exception_H
+#define __H5Exception_H
+
+#include <string>
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#ifdef H5_NO_STD
+ #define H5std_string ::string
+#else
+ #define H5std_string std::string
+#endif
+#endif
+
+/*! \class Exception
+ \brief Exception provides wrappers of HDF5 error handling functions.
+
+ Many classes are derived from Exception for specific HDF5 C interfaces.
+*/
+class H5_DLLCPP Exception {
+ public:
+ // Creates an exception with a function name where the failure occurs
+ // and an optional detailed message
+ Exception(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+
+ // Returns a character string that describes the error specified by
+ // a major error number.
+ H5std_string getMajorString( hid_t err_major_id ) const;
+
+ // Returns a character string that describes the error specified by
+ // a minor error number.
+ H5std_string getMinorString( hid_t err_minor_id ) const;
+
+ // Returns the detailed message set at the time the exception is thrown
+ H5std_string getDetailMsg() const;
+ const char* getCDetailMsg() const; // C string of detailed message
+ H5std_string getFuncName() const; // function name as a string object
+ const char* getCFuncName() const; // function name as a char string
+
+ // Turns on the automatic error printing.
+ static void setAutoPrint( H5E_auto2_t& func, void* client_data);
+
+ // Turns off the automatic error printing.
+ static void dontPrint();
+
+ // Retrieves the current settings for the automatic error stack
+ // traversal function and its data.
+ static void getAutoPrint( H5E_auto2_t& func, void** client_data);
+
+ // Clears the error stack for the current thread.
+ static void clearErrorStack();
+
+ // Walks the error stack for the current thread, calling the
+ // specified function.
+ static void walkErrorStack( H5E_direction_t direction,
+ H5E_walk2_t func, void* client_data);
+
+ // Prints the error stack in a default manner.
+ static void printErrorStack(FILE* stream = stderr,
+ hid_t err_stack = H5E_DEFAULT); // Static
+ virtual void printError(FILE* stream = NULL) const;
+
+ // Default constructor
+ Exception();
+
+ // copy constructor
+ Exception( const Exception& orig);
+
+ // virtual Destructor
+ virtual ~Exception() throw();
+
+ private:
+ H5std_string detail_message;
+ H5std_string func_name;
+
+ protected:
+ // Default value for detail_message
+ static const char DEFAULT_MSG[];
+};
+
+class H5_DLLCPP FileIException : public Exception {
+ public:
+ FileIException( const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ FileIException();
+ virtual ~FileIException() throw();
+};
+
+class H5_DLLCPP GroupIException : public Exception {
+ public:
+ GroupIException( const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ GroupIException();
+ virtual ~GroupIException() throw();
+};
+
+class H5_DLLCPP DataSpaceIException : public Exception {
+ public:
+ DataSpaceIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ DataSpaceIException();
+ virtual ~DataSpaceIException() throw();
+};
+
+class H5_DLLCPP DataTypeIException : public Exception {
+ public:
+ DataTypeIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ DataTypeIException();
+ virtual ~DataTypeIException() throw();
+};
+
+class H5_DLLCPP PropListIException : public Exception {
+ public:
+ PropListIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ PropListIException();
+ virtual ~PropListIException() throw();
+};
+
+class H5_DLLCPP DataSetIException : public Exception {
+ public:
+ DataSetIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ DataSetIException();
+ virtual ~DataSetIException() throw();
+};
+
+class H5_DLLCPP AttributeIException : public Exception {
+ public:
+ AttributeIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ AttributeIException();
+ virtual ~AttributeIException() throw();
+};
+
+class H5_DLLCPP ReferenceException : public Exception {
+ public:
+ ReferenceException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ ReferenceException();
+ virtual ~ReferenceException() throw();
+};
+
+class H5_DLLCPP LibraryIException : public Exception {
+ public:
+ LibraryIException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ LibraryIException();
+ virtual ~LibraryIException() throw();
+};
+
+class H5_DLLCPP LocationException : public Exception {
+ public:
+ LocationException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ LocationException();
+ virtual ~LocationException() throw();
+};
+
+class H5_DLLCPP IdComponentException : public Exception {
+ public:
+ IdComponentException(const H5std_string& func_name, const H5std_string& message = DEFAULT_MSG);
+ IdComponentException();
+ virtual ~IdComponentException() throw();
+};
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+
+#endif // __H5Exception_H
diff --git a/Resources/windows-libs/HDF5/include/H5FDcore.h b/Resources/windows-libs/HDF5/include/H5FDcore.h
new file mode 100644
index 0000000000000000000000000000000000000000..dca110ea20826e9a7c23f286d1153a4aed69b26b
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDcore.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDcore_H
+#define H5FDcore_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_CORE (H5FD_core_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_core_init(void);
+H5_DLL void H5FD_core_term(void);
+H5_DLL herr_t H5Pset_fapl_core(hid_t fapl_id, size_t increment,
+ hbool_t backing_store);
+H5_DLL herr_t H5Pget_fapl_core(hid_t fapl_id, size_t *increment/*out*/,
+ hbool_t *backing_store/*out*/);
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDdirect.h b/Resources/windows-libs/HDF5/include/H5FDdirect.h
new file mode 100644
index 0000000000000000000000000000000000000000..26c70f30fa09a5077c4dffcb78faf500e30a3dc6
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDdirect.h
@@ -0,0 +1,57 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Raymond Lu <slu@hdfgroup.uiuc.edu>
+ * Wednesday, 20 September 2006
+ *
+ * Purpose: The public header file for the direct driver.
+ */
+#ifndef H5FDdirect_H
+#define H5FDdirect_H
+
+#include "H5Ipublic.h"
+
+#ifdef H5_HAVE_DIRECT
+# define H5FD_DIRECT (H5FD_direct_init())
+#else
+# define H5FD_DIRECT (-1)
+#endif /* H5_HAVE_DIRECT */
+
+#ifdef H5_HAVE_DIRECT
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Default values for memory boundary, file block size, and maximal copy buffer size.
+ * Application can set these values through the function H5Pset_fapl_direct. */
+#define MBOUNDARY_DEF 4096
+#define FBSIZE_DEF 4096
+#define CBSIZE_DEF 16*1024*1024
+
+H5_DLL hid_t H5FD_direct_init(void);
+H5_DLL void H5FD_direct_term(void);
+H5_DLL herr_t H5Pset_fapl_direct(hid_t fapl_id, size_t alignment, size_t block_size,
+ size_t cbuf_size);
+H5_DLL herr_t H5Pget_fapl_direct(hid_t fapl_id, size_t *boundary/*out*/,
+ size_t *block_size/*out*/, size_t *cbuf_size/*out*/);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5_HAVE_DIRECT */
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDfamily.h b/Resources/windows-libs/HDF5/include/H5FDfamily.h
new file mode 100644
index 0000000000000000000000000000000000000000..dcb63e647e16d7083e4645f316d16479aad3d923
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDfamily.h
@@ -0,0 +1,44 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 4, 1999
+ *
+ * Purpose: The public header file for the family driver.
+ */
+#ifndef H5FDfamily_H
+#define H5FDfamily_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_FAMILY (H5FD_family_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_family_init(void);
+H5_DLL void H5FD_family_term(void);
+H5_DLL herr_t H5Pset_fapl_family(hid_t fapl_id, hsize_t memb_size,
+ hid_t memb_fapl_id);
+H5_DLL herr_t H5Pget_fapl_family(hid_t fapl_id, hsize_t *memb_size/*out*/,
+ hid_t *memb_fapl_id/*out*/);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDlog.h b/Resources/windows-libs/HDF5/include/H5FDlog.h
new file mode 100644
index 0000000000000000000000000000000000000000..ffc4df1a56ce0a55fadd5b94f36995a291dc0a23
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDlog.h
@@ -0,0 +1,72 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Monday, April 17, 2000
+ *
+ * Purpose: The public header file for the log driver.
+ */
+#ifndef H5FDlog_H
+#define H5FDlog_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_LOG (H5FD_log_init())
+
+/* Flags for H5Pset_fapl_log() */
+/* Flags for tracking where reads/writes/seeks occur */
+#define H5FD_LOG_LOC_READ 0x00000001
+#define H5FD_LOG_LOC_WRITE 0x00000002
+#define H5FD_LOG_LOC_SEEK 0x00000004
+#define H5FD_LOG_LOC_IO (H5FD_LOG_LOC_READ|H5FD_LOG_LOC_WRITE|H5FD_LOG_LOC_SEEK)
+/* Flags for tracking number of times each byte is read/written */
+#define H5FD_LOG_FILE_READ 0x00000008
+#define H5FD_LOG_FILE_WRITE 0x00000010
+#define H5FD_LOG_FILE_IO (H5FD_LOG_FILE_READ|H5FD_LOG_FILE_WRITE)
+/* Flag for tracking "flavor" (type) of information stored at each byte */
+#define H5FD_LOG_FLAVOR 0x00000020
+/* Flags for tracking total number of reads/writes/seeks/truncates */
+#define H5FD_LOG_NUM_READ 0x00000040
+#define H5FD_LOG_NUM_WRITE 0x00000080
+#define H5FD_LOG_NUM_SEEK 0x00000100
+#define H5FD_LOG_NUM_TRUNCATE 0x00000200
+#define H5FD_LOG_NUM_IO (H5FD_LOG_NUM_READ|H5FD_LOG_NUM_WRITE|H5FD_LOG_NUM_SEEK|H5FD_LOG_NUM_TRUNCATE)
+/* Flags for tracking time spent in open/stat/read/write/seek/close */
+#define H5FD_LOG_TIME_OPEN 0x00000400
+#define H5FD_LOG_TIME_STAT 0x00000800
+#define H5FD_LOG_TIME_READ 0x00001000
+#define H5FD_LOG_TIME_WRITE 0x00002000
+#define H5FD_LOG_TIME_SEEK 0x00004000
+#define H5FD_LOG_TIME_CLOSE 0x00008000
+#define H5FD_LOG_TIME_IO (H5FD_LOG_TIME_OPEN|H5FD_LOG_TIME_STAT|H5FD_LOG_TIME_READ|H5FD_LOG_TIME_WRITE|H5FD_LOG_TIME_SEEK|H5FD_LOG_TIME_CLOSE)
+/* Flag for tracking allocation of space in file */
+#define H5FD_LOG_ALLOC 0x00010000
+#define H5FD_LOG_ALL (H5FD_LOG_ALLOC|H5FD_LOG_TIME_IO|H5FD_LOG_NUM_IO|H5FD_LOG_FLAVOR|H5FD_LOG_FILE_IO|H5FD_LOG_LOC_IO)
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_log_init(void);
+H5_DLL void H5FD_log_term(void);
+H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5FDmpi.h b/Resources/windows-libs/HDF5/include/H5FDmpi.h
new file mode 100644
index 0000000000000000000000000000000000000000..784fe70c0568c2ec8e662a327f6299a6727c96c0
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDmpi.h
@@ -0,0 +1,62 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Friday, January 30, 2004
+ *
+ * Purpose: The public header file for common items for all MPI VFL drivers
+ */
+#ifndef H5FDmpi_H
+#define H5FDmpi_H
+
+/***** Macros for One linked collective IO case. *****/
+/* The default value to do one linked collective IO for all chunks.
+ If the average number of chunks per process is greater than this value,
+ the library will create an MPI derived datatype to link all chunks to do collective IO.
+ The user can set this value through an API. */
+
+#define H5D_ONE_LINK_CHUNK_IO_THRESHOLD 0
+/***** Macros for multi-chunk collective IO case. *****/
+/* The default value of the threshold to do collective IO for this chunk.
+ If the average percentage of processes per chunk is greater than the default value,
+ collective IO is done for this chunk.
+*/
+
+#define H5D_MULTI_CHUNK_IO_COL_THRESHOLD 60
+/* Type of I/O for data transfer properties */
+typedef enum H5FD_mpio_xfer_t {
+ H5FD_MPIO_INDEPENDENT = 0, /*zero is the default*/
+ H5FD_MPIO_COLLECTIVE
+} H5FD_mpio_xfer_t;
+
+/* Type of chunked dataset I/O */
+typedef enum H5FD_mpio_chunk_opt_t {
+ H5FD_MPIO_CHUNK_DEFAULT = 0,
+ H5FD_MPIO_CHUNK_ONE_IO, /*zero is the default*/
+ H5FD_MPIO_CHUNK_MULTI_IO
+} H5FD_mpio_chunk_opt_t;
+
+/* Type of collective I/O */
+typedef enum H5FD_mpio_collective_opt_t {
+ H5FD_MPIO_COLLECTIVE_IO = 0,
+ H5FD_MPIO_INDIVIDUAL_IO /*zero is the default*/
+} H5FD_mpio_collective_opt_t;
+
+/* Include all the MPI VFL headers */
+#include "H5FDmpio.h" /* MPI I/O file driver */
+
+#endif /* H5FDmpi_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5FDmpio.h b/Resources/windows-libs/HDF5/include/H5FDmpio.h
new file mode 100644
index 0000000000000000000000000000000000000000..1d91cc32cb45bde9abc4c4248724f92617aa218c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDmpio.h
@@ -0,0 +1,66 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the mpio driver.
+ */
+#ifndef H5FDmpio_H
+#define H5FDmpio_H
+
+/* Macros */
+
+#ifdef H5_HAVE_PARALLEL
+# define H5FD_MPIO (H5FD_mpio_init())
+#else
+# define H5FD_MPIO (-1)
+#endif /* H5_HAVE_PARALLEL */
+
+#ifdef H5_HAVE_PARALLEL
+/*Turn on H5FDmpio_debug if H5F_DEBUG is on */
+#ifdef H5F_DEBUG
+#ifndef H5FDmpio_DEBUG
+#define H5FDmpio_DEBUG
+#endif
+#endif
+
+/* Global var whose value comes from environment variable */
+/* (Defined in H5FDmpio.c) */
+H5_DLLVAR hbool_t H5FD_mpi_opt_types_g;
+
+/* Function prototypes */
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_mpio_init(void);
+H5_DLL void H5FD_mpio_term(void);
+H5_DLL herr_t H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info);
+H5_DLL herr_t H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm/*out*/,
+ MPI_Info *info/*out*/);
+H5_DLL herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode);
+H5_DLL herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode/*out*/);
+H5_DLL herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk);
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5_HAVE_PARALLEL */
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDmulti.h b/Resources/windows-libs/HDF5/include/H5FDmulti.h
new file mode 100644
index 0000000000000000000000000000000000000000..b45a02957004a98a13c5133e022aa859ba2863e3
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDmulti.h
@@ -0,0 +1,49 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the "multi" driver.
+ */
+#ifndef H5FDmulti_H
+#define H5FDmulti_H
+
+#include "H5Ipublic.h"
+#include "H5Ppublic.h" /* Property lists */
+#include "H5Fpublic.h"
+
+#define H5FD_MULTI (H5FD_multi_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_multi_init(void);
+H5_DLL void H5FD_multi_term(void);
+H5_DLL herr_t H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map,
+ const hid_t *memb_fapl, const char * const *memb_name,
+ const haddr_t *memb_addr, hbool_t relax);
+H5_DLL herr_t H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map/*out*/,
+ hid_t *memb_fapl/*out*/, char **memb_name/*out*/,
+ haddr_t *memb_addr/*out*/, hbool_t *relax/*out*/);
+H5_DLL herr_t H5Pset_fapl_split(hid_t fapl, const char *meta_ext,
+ hid_t meta_plist_id, const char *raw_ext,
+ hid_t raw_plist_id);
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDpkg.h b/Resources/windows-libs/HDF5/include/H5FDpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..7c0988ea13d8d5cf7bac50e4ddcecd0a352995f6
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDpkg.h
@@ -0,0 +1,67 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Thursday, January 3, 2008
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5FD package. Source files outside the H5FD package should
+ * include H5FDprivate.h instead.
+ */
+#ifndef H5FD_PACKAGE
+#error "Do not include this file outside the H5FD package!"
+#endif
+
+#ifndef _H5FDpkg_H
+#define _H5FDpkg_H
+
+/* Get package's private header */
+#include "H5FDprivate.h" /* File drivers */
+
+/* Other private headers needed by this file */
+#include "H5FLprivate.h" /* Free lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+H5_DLL herr_t H5FD_init(void);
+H5_DLL haddr_t H5FD_alloc_real(H5FD_t *file, hid_t dxpl_id, H5FD_mem_t type,
+ hsize_t size, haddr_t *align_addr, hsize_t *align_size);
+H5_DLL herr_t H5FD_free_real(H5FD_t *file, hid_t dxpl_id, H5FD_mem_t type,
+ haddr_t addr, hsize_t size);
+
+
+/* Testing routines */
+#ifdef H5FD_TESTING
+#endif /* H5FD_TESTING */
+
+#endif /* _H5FDpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5FDpublic.h b/Resources/windows-libs/HDF5/include/H5FDpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..f1b3920fb6a324db00aa51fced31a50e84553af6
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDpublic.h
@@ -0,0 +1,318 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, July 26, 1999
+ */
+#ifndef _H5FDpublic_H
+#define _H5FDpublic_H
+
+#include "H5public.h"
+#include "H5Fpublic.h" /*for H5F_close_degree_t */
+
+#define H5_HAVE_VFL 1 /*define a convenient app feature test*/
+#define H5FD_VFD_DEFAULT 0 /* Default VFL driver value */
+
+/* Types of allocation requests: see H5Fpublic.h */
+typedef enum H5F_mem_t H5FD_mem_t;
+
+/* Map "fractal heap" header blocks to 'ohdr' type file memory, since its
+ * a fair amount of work to add a new kind of file memory and they are similar
+ * enough to object headers and probably too minor to deserve their own type.
+ *
+ * Map "fractal heap" indirect blocks to 'ohdr' type file memory, since they
+ * are similar to fractal heap header blocks.
+ *
+ * Map "fractal heap" direct blocks to 'lheap' type file memory, since they
+ * will be replacing local heaps.
+ *
+ * Map "fractal heap" 'huge' objects to 'draw' type file memory, since they
+ * represent large objects that are directly stored in the file.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_FHEAP_HDR H5FD_MEM_OHDR
+#define H5FD_MEM_FHEAP_IBLOCK H5FD_MEM_OHDR
+#define H5FD_MEM_FHEAP_DBLOCK H5FD_MEM_LHEAP
+#define H5FD_MEM_FHEAP_HUGE_OBJ H5FD_MEM_DRAW
+
+/* Map "free space" header blocks to 'ohdr' type file memory, since its
+ * a fair amount of work to add a new kind of file memory and they are similar
+ * enough to object headers and probably too minor to deserve their own type.
+ *
+ * Map "free space" serialized sections to 'lheap' type file memory, since they
+ * are similar enough to local heap info.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_FSPACE_HDR H5FD_MEM_OHDR
+#define H5FD_MEM_FSPACE_SINFO H5FD_MEM_LHEAP
+
+/* Map "shared object header message" master table to 'ohdr' type file memory,
+ * since its a fair amount of work to add a new kind of file memory and they are
+ * similar enough to object headers and probably too minor to deserve their own
+ * type.
+ *
+ * Map "shared object header message" indices to 'btree' type file memory,
+ * since they are similar enough to B-tree nodes.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_SOHM_TABLE H5FD_MEM_OHDR
+#define H5FD_MEM_SOHM_INDEX H5FD_MEM_BTREE
+
+/*
+ * A free-list map which maps all types of allocation requests to a single
+ * free list. This is useful for drivers that don't really care about
+ * keeping different requests segregated in the underlying file and which
+ * want to make most efficient reuse of freed memory. The use of the
+ * H5FD_MEM_SUPER free list is arbitrary.
+ */
+#define H5FD_FLMAP_SINGLE { \
+ H5FD_MEM_SUPER, /*default*/ \
+ H5FD_MEM_SUPER, /*super*/ \
+ H5FD_MEM_SUPER, /*btree*/ \
+ H5FD_MEM_SUPER, /*draw*/ \
+ H5FD_MEM_SUPER, /*gheap*/ \
+ H5FD_MEM_SUPER, /*lheap*/ \
+ H5FD_MEM_SUPER /*ohdr*/ \
+}
+
+/*
+ * A free-list map which segregates requests into `raw' or `meta' data
+ * pools.
+ */
+#define H5FD_FLMAP_DICHOTOMY { \
+ H5FD_MEM_SUPER, /*default*/ \
+ H5FD_MEM_SUPER, /*super*/ \
+ H5FD_MEM_SUPER, /*btree*/ \
+ H5FD_MEM_DRAW, /*draw*/ \
+ H5FD_MEM_DRAW, /*gheap*/ \
+ H5FD_MEM_SUPER, /*lheap*/ \
+ H5FD_MEM_SUPER /*ohdr*/ \
+}
+
+/*
+ * The default free list map which causes each request type to use it's own
+ * free-list.
+ */
+#define H5FD_FLMAP_DEFAULT { \
+ H5FD_MEM_DEFAULT, /*default*/ \
+ H5FD_MEM_DEFAULT, /*super*/ \
+ H5FD_MEM_DEFAULT, /*btree*/ \
+ H5FD_MEM_DEFAULT, /*draw*/ \
+ H5FD_MEM_DEFAULT, /*gheap*/ \
+ H5FD_MEM_DEFAULT, /*lheap*/ \
+ H5FD_MEM_DEFAULT /*ohdr*/ \
+}
+
+
+/* Define VFL driver features that can be enabled on a per-driver basis */
+/* These are returned with the 'query' function pointer in H5FD_class_t */
+ /*
+ * Defining the H5FD_FEAT_AGGREGATE_METADATA for a VFL driver means that
+ * the library will attempt to allocate a larger block for metadata and
+ * then sub-allocate each metadata request from that larger block.
+ */
+#define H5FD_FEAT_AGGREGATE_METADATA 0x00000001
+ /*
+ * Defining the H5FD_FEAT_ACCUMULATE_METADATA for a VFL driver means that
+ * the library will attempt to cache metadata as it is written to the file
+ * and build up a larger block of metadata to eventually pass to the VFL
+ * 'write' routine.
+ *
+ * Distinguish between updating the metadata accumulator on writes and
+ * reads. This is particularly (perhaps only, even) important for MPI-I/O
+ * where we guarantee that writes are collective, but reads may not be.
+ * If we were to allow the metadata accumulator to be written during a
+ * read operation, the application would hang.
+ */
+#define H5FD_FEAT_ACCUMULATE_METADATA_WRITE 0x00000002
+#define H5FD_FEAT_ACCUMULATE_METADATA_READ 0x00000004
+#define H5FD_FEAT_ACCUMULATE_METADATA (H5FD_FEAT_ACCUMULATE_METADATA_WRITE|H5FD_FEAT_ACCUMULATE_METADATA_READ)
+ /*
+ * Defining the H5FD_FEAT_DATA_SIEVE for a VFL driver means that
+ * the library will attempt to cache raw data as it is read from/written to
+ * a file in a "data seive" buffer. See Rajeev Thakur's papers:
+ * http://www.mcs.anl.gov/~thakur/papers/romio-coll.ps.gz
+ * http://www.mcs.anl.gov/~thakur/papers/mpio-high-perf.ps.gz
+ */
+#define H5FD_FEAT_DATA_SIEVE 0x00000008
+ /*
+ * Defining the H5FD_FEAT_AGGREGATE_SMALLDATA for a VFL driver means that
+ * the library will attempt to allocate a larger block for "small" raw data
+ * and then sub-allocate "small" raw data requests from that larger block.
+ */
+#define H5FD_FEAT_AGGREGATE_SMALLDATA 0x00000010
+ /*
+ * Defining the H5FD_FEAT_IGNORE_DRVRINFO for a VFL driver means that
+ * the library will ignore the driver info that is encoded in the file
+ * for the VFL driver. (This will cause the driver info to be eliminated
+ * from the file when it is flushed/closed, if the file is opened R/W).
+ */
+#define H5FD_FEAT_IGNORE_DRVRINFO 0x00000020
+ /*
+ * Defining the H5FD_FEAT_DIRTY_SBLK_LOAD for a VFL driver means that
+ * the library will mark the superblock dirty when the file is opened
+ * R/W. This will cause the driver info to be re-encoded when the file
+ * is flushed/closed.
+ */
+#define H5FD_FEAT_DIRTY_SBLK_LOAD 0x00000040
+ /*
+ * Defining the H5FD_FEAT_POSIX_COMPAT_HANDLE for a VFL driver means that
+ * the handle for the VFD (returned with the 'get_handle' callback) is
+ * of type 'int' and is compatible with POSIX I/O calls.
+ */
+#define H5FD_FEAT_POSIX_COMPAT_HANDLE 0x00000080
+ /*
+ * Defining the H5FD_FEAT_ALLOW_FILE_IMAGE for a VFL driver means that
+ * the driver is able to use a file image in the fapl as the initial
+ * contents of a file.
+ */
+#define H5FD_FEAT_ALLOW_FILE_IMAGE 0x00000400
+ /*
+ * Defining the H5FD_FEAT_CAN_USE_FILE_IMAGE_CALLBACKS for a VFL driver
+ * means that the driver is able to use callbacks to make a copy of the
+ * image to store in memory.
+ */
+#define H5FD_FEAT_CAN_USE_FILE_IMAGE_CALLBACKS 0x00000800
+
+
+/* Forward declaration */
+typedef struct H5FD_t H5FD_t;
+
+/* Class information for each file driver */
+typedef struct H5FD_class_t {
+ const char *name;
+ haddr_t maxaddr;
+ H5F_close_degree_t fc_degree;
+ hsize_t (*sb_size)(H5FD_t *file);
+ herr_t (*sb_encode)(H5FD_t *file, char *name/*out*/,
+ unsigned char *p/*out*/);
+ herr_t (*sb_decode)(H5FD_t *f, const char *name, const unsigned char *p);
+ size_t fapl_size;
+ void * (*fapl_get)(H5FD_t *file);
+ void * (*fapl_copy)(const void *fapl);
+ herr_t (*fapl_free)(void *fapl);
+ size_t dxpl_size;
+ void * (*dxpl_copy)(const void *dxpl);
+ herr_t (*dxpl_free)(void *dxpl);
+ H5FD_t *(*open)(const char *name, unsigned flags, hid_t fapl,
+ haddr_t maxaddr);
+ herr_t (*close)(H5FD_t *file);
+ int (*cmp)(const H5FD_t *f1, const H5FD_t *f2);
+ herr_t (*query)(const H5FD_t *f1, unsigned long *flags);
+ herr_t (*get_type_map)(const H5FD_t *file, H5FD_mem_t *type_map);
+ haddr_t (*alloc)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
+ herr_t (*free)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, hsize_t size);
+ haddr_t (*get_eoa)(const H5FD_t *file, H5FD_mem_t type);
+ herr_t (*set_eoa)(H5FD_t *file, H5FD_mem_t type, haddr_t addr);
+ haddr_t (*get_eof)(const H5FD_t *file);
+ herr_t (*get_handle)(H5FD_t *file, hid_t fapl, void**file_handle);
+ herr_t (*read)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl,
+ haddr_t addr, size_t size, void *buffer);
+ herr_t (*write)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl,
+ haddr_t addr, size_t size, const void *buffer);
+ herr_t (*flush)(H5FD_t *file, hid_t dxpl_id, unsigned closing);
+ herr_t (*truncate)(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+ herr_t (*lock)(H5FD_t *file, unsigned char *oid, unsigned lock_type, hbool_t last);
+ herr_t (*unlock)(H5FD_t *file, unsigned char *oid, hbool_t last);
+ H5FD_mem_t fl_map[H5FD_MEM_NTYPES];
+} H5FD_class_t;
+
+/* A free list is a singly-linked list of address/size pairs. */
+typedef struct H5FD_free_t {
+ haddr_t addr;
+ hsize_t size;
+ struct H5FD_free_t *next;
+} H5FD_free_t;
+
+/*
+ * The main datatype for each driver. Public fields common to all drivers
+ * are declared here and the driver appends private fields in memory.
+ */
+struct H5FD_t {
+ hid_t driver_id; /*driver ID for this file */
+ const H5FD_class_t *cls; /*constant class info */
+ unsigned long fileno; /* File 'serial' number */
+ unsigned long feature_flags; /* VFL Driver feature Flags */
+ haddr_t maxaddr; /* For this file, overrides class */
+ haddr_t base_addr; /* Base address for HDF5 data w/in file */
+
+ /* Space allocation management fields */
+ hsize_t threshold; /* Threshold for alignment */
+ hsize_t alignment; /* Allocation alignment */
+};
+
+/* Define enum for the source of file image callbacks */
+typedef enum {
+ H5FD_FILE_IMAGE_OP_NO_OP,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_SET,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_COPY,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_GET,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE,
+ H5FD_FILE_IMAGE_OP_FILE_OPEN,
+ H5FD_FILE_IMAGE_OP_FILE_RESIZE,
+ H5FD_FILE_IMAGE_OP_FILE_CLOSE
+} H5FD_file_image_op_t;
+
+/* Define structure to hold file image callbacks */
+typedef struct {
+ void *(*image_malloc)(size_t size, H5FD_file_image_op_t file_image_op,
+ void *udata);
+ void *(*image_memcpy)(void *dest, const void *src, size_t size,
+ H5FD_file_image_op_t file_image_op, void *udata);
+ void *(*image_realloc)(void *ptr, size_t size,
+ H5FD_file_image_op_t file_image_op, void *udata);
+ herr_t (*image_free)(void *ptr, H5FD_file_image_op_t file_image_op,
+ void *udata);
+ void *(*udata_copy)(void *udata);
+ herr_t (*udata_free)(void *udata);
+ void *udata;
+} H5FD_file_image_callbacks_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Function prototypes */
+H5_DLL hid_t H5FDregister(const H5FD_class_t *cls);
+H5_DLL herr_t H5FDunregister(hid_t driver_id);
+H5_DLL H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id,
+ haddr_t maxaddr);
+H5_DLL herr_t H5FDclose(H5FD_t *file);
+H5_DLL int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2);
+H5_DLL int H5FDquery(const H5FD_t *f, unsigned long *flags);
+H5_DLL haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
+H5_DLL herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, hsize_t size);
+H5_DLL haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type);
+H5_DLL herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa);
+H5_DLL haddr_t H5FDget_eof(H5FD_t *file);
+H5_DLL herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle);
+H5_DLL herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, size_t size, void *buf/*out*/);
+H5_DLL herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, size_t size, const void *buf);
+H5_DLL herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, unsigned closing);
+H5_DLL herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5FDsec2.h b/Resources/windows-libs/HDF5/include/H5FDsec2.h
new file mode 100644
index 0000000000000000000000000000000000000000..b7db0d5ea998e779c8ea2f47ef42789ebaa5b39d
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDsec2.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDsec2_H
+#define H5FDsec2_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_SEC2 (H5FD_sec2_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_sec2_init(void);
+H5_DLL void H5FD_sec2_term(void);
+H5_DLL herr_t H5Pset_fapl_sec2(hid_t fapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5FDstdio.h b/Resources/windows-libs/HDF5/include/H5FDstdio.h
new file mode 100644
index 0000000000000000000000000000000000000000..80443d890165a4588df6b01e594309fc39bfe16c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDstdio.h
@@ -0,0 +1,41 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDstdio_H
+#define H5FDstdio_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_STDIO (H5FD_stdio_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_stdio_init(void);
+H5_DLL void H5FD_stdio_term(void);
+H5_DLL herr_t H5Pset_fapl_stdio(hid_t fapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FDwindows.h b/Resources/windows-libs/HDF5/include/H5FDwindows.h
new file mode 100644
index 0000000000000000000000000000000000000000..7b547bf034d20adc8d1ed7dca18bc30b261e185f
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FDwindows.h
@@ -0,0 +1,49 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Scott Wegner <swegner@hdfgroup.org>
+ * Based on code by Robb Matzke
+ * Thursday, May 24 2007
+ *
+ * Purpose: The public header file for the windows driver.
+ */
+#ifndef H5FDwindows_H
+#define H5FDwindows_H
+
+#include "H5Ipublic.h"
+#include "H5FDsec2.h"
+
+#define H5FD_WINDOWS (H5FD_windows_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* The code behind the windows VFD has been removed and the windows
+ * VFD initialization has been redirected to the SEC2 driver. The
+ * "Windows" VFD was actually identical to the SEC2 driver code
+ * (a planned Win32 API driver never happened) so this change
+ * should be transparent to users.
+ */
+#define H5FD_windows_init H5FD_sec2_init
+#define H5FD_windows_term H5FD_sec2_term
+H5_DLL herr_t H5Pset_fapl_windows(hid_t fapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5FSpkg.h b/Resources/windows-libs/HDF5/include/H5FSpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..e22e4113ad0a88c59692444a62025d0a8e1aab78
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FSpkg.h
@@ -0,0 +1,250 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Tuesday, May 2, 2006
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5FS package. Source files outside the H5FS package should
+ * include H5FSprivate.h instead.
+ */
+#ifndef H5FS_PACKAGE
+#error "Do not include this file outside the H5FS package!"
+#endif
+
+#ifndef _H5FSpkg_H
+#define _H5FSpkg_H
+
+/* Uncomment this macro to enable debugging output for free space manager */
+/* #define H5FS_DEBUG */
+
+/* Uncomment this macro to enable debugging output for free space sections */
+/* #define H5FS_SINFO_DEBUG */
+
+/* Uncomment this macro to enable extra sanity checking */
+/* #define H5FS_DEBUG_ASSERT */
+
+/* Get package's private header */
+#include "H5FSprivate.h" /* File free space */
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5SLprivate.h" /* Skip lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Size of checksum information (on disk) */
+#define H5FS_SIZEOF_CHKSUM 4
+
+/* "Standard" size of prefix information for free space metadata */
+#define H5FS_METADATA_PREFIX_SIZE ( \
+ H5_SIZEOF_MAGIC /* Signature */ \
+ + 1 /* Version */ \
+ + H5FS_SIZEOF_CHKSUM /* Metadata checksum */ \
+ )
+
+/* Size of the fractal heap header on disk */
+#define H5FS_HEADER_SIZE(f) ( \
+ /* General metadata fields */ \
+ H5FS_METADATA_PREFIX_SIZE \
+ \
+ /* Free space header specific fields */ \
+ + 1 /* Client ID */ \
+ + H5F_SIZEOF_SIZE(f) /* Total free space tracked */ \
+ + H5F_SIZEOF_SIZE(f) /* Total # of sections tracked */ \
+ + H5F_SIZEOF_SIZE(f) /* # of serializable sections tracked */ \
+ + H5F_SIZEOF_SIZE(f) /* # of ghost sections tracked */ \
+ + 2 /* Number of section classes */ \
+ + 2 /* Shrink percent */ \
+ + 2 /* Expand percent */ \
+ + 2 /* Size of address space for sections (log2 of value) */ \
+ + H5F_SIZEOF_SIZE(f) /* Max. size of section to track */ \
+ + H5F_SIZEOF_ADDR(f) /* Address of serialized free space sections */ \
+ + H5F_SIZEOF_SIZE(f) /* Size of serialized free space sections used */ \
+ + H5F_SIZEOF_SIZE(f) /* Allocated size of serialized free space sections */ \
+ )
+
+/* Size of the free space serialized sections on disk */
+#define H5FS_SINFO_PREFIX_SIZE(f) ( \
+ /* General metadata fields */ \
+ H5FS_METADATA_PREFIX_SIZE \
+ \
+ /* Free space serialized sections specific fields */ \
+ + H5F_SIZEOF_ADDR(f) /* Address of free space header for these sections */ \
+ )
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Callback info for loading a free space header into the cache */
+typedef struct H5FS_hdr_cache_ud_t {
+ H5F_t *f; /* File that free space header is within */
+ size_t nclasses; /* Number of section classes */
+ const H5FS_section_class_t **classes; /* Array of section class info */
+ void *cls_init_udata; /* Pointer to class init user data */
+ haddr_t addr; /* Address of header */
+} H5FS_hdr_cache_ud_t;
+
+/* Callback info for loading free space section info into the cache */
+typedef struct H5FS_sinfo_cache_ud_t {
+ H5F_t *f; /* File that free space section info is within */
+ H5FS_t *fspace; /* free space manager */
+ hid_t dxpl_id;
+} H5FS_sinfo_cache_ud_t;
+
+/* Free space section bin info */
+typedef struct H5FS_bin_t {
+ size_t tot_sect_count; /* Total # of sections in this bin */
+ size_t serial_sect_count; /* # of serializable sections in this bin */
+ size_t ghost_sect_count; /* # of un-serializable sections in this bin */
+ H5SL_t *bin_list; /* Skip list of differently sized sections */
+} H5FS_bin_t;
+
+/* Free space node for free space sections of the same size */
+typedef struct H5FS_node_t {
+ hsize_t sect_size; /* Size of all sections on list */
+ size_t serial_count; /* # of serializable sections on list */
+ size_t ghost_count; /* # of un-serializable sections on list */
+ H5SL_t *sect_list; /* Skip list to hold pointers to actual free list section node */
+} H5FS_node_t;
+
+/* Free space section info */
+typedef struct H5FS_sinfo_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+/* Stored information */
+ H5FS_bin_t *bins; /* Array of lists of lists of free sections */
+
+/* Computed/cached values */
+ hbool_t dirty; /* Whether this info in memory is out of sync w/info in file */
+ unsigned nbins; /* Number of bins */
+ size_t serial_size; /* Total size of all serializable sections */
+ size_t tot_size_count; /* Total number of differently sized sections */
+ size_t serial_size_count; /* Total number of differently sized serializable sections */
+ size_t ghost_size_count; /* Total number of differently sized un-serializable sections */
+ unsigned sect_prefix_size; /* Size of the section serialization prefix (in bytes) */
+ unsigned sect_off_size; /* Size of a section offset (in bytes) */
+ unsigned sect_len_size; /* Size of a section length (in bytes) */
+ H5FS_t *fspace; /* Pointer to free space manager that owns sections */
+
+/* Memory data structures (not stored directly) */
+ H5SL_t *merge_list; /* Skip list to hold sections for detecting merges */
+} H5FS_sinfo_t;
+
+/* Free space header info */
+struct H5FS_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+/* Stored information */
+ /* Statistics about sections managed */
+ hsize_t tot_space; /* Total amount of space tracked */
+ hsize_t tot_sect_count; /* Total # of sections tracked */
+ hsize_t serial_sect_count; /* # of serializable sections tracked */
+ hsize_t ghost_sect_count; /* # of un-serializable sections tracked */
+
+ /* Creation parameters */
+ H5FS_client_t client; /* Type of user of this free space manager */
+ unsigned nclasses; /* Number of section classes handled */
+ unsigned shrink_percent; /* Percent of "normal" serialized size to shrink serialized space at */
+ unsigned expand_percent; /* Percent of "normal" serialized size to expand serialized space at */
+ unsigned max_sect_addr; /* Size of address space free sections are within (log2 of actual value) */
+ hsize_t max_sect_size; /* Maximum size of section to track */
+
+ /* Serialized section information */
+ haddr_t sect_addr; /* Address of the section info in the file */
+ hsize_t sect_size; /* Size of the section info in the file */
+ hsize_t alloc_sect_size; /* Allocated size of the section info in the file */
+
+/* Computed/cached values */
+ unsigned rc; /* Count of outstanding references to struct */
+ haddr_t addr; /* Address of free space header on disk */
+ size_t hdr_size; /* Size of free space header on disk */
+ H5FS_sinfo_t *sinfo; /* Section information */
+ unsigned sinfo_lock_count; /* # of times the section info has been locked */
+ hbool_t sinfo_protected; /* Whether the section info was protected when locked */
+ hbool_t sinfo_modified; /* Whether the section info has been modified while locked */
+ H5AC_protect_t sinfo_accmode; /* Access mode for protecting the section info */
+ size_t max_cls_serial_size; /* Max. additional size of serialized form of section */
+ hsize_t threshold; /* Threshold for alignment */
+ hsize_t alignment; /* Alignment */
+
+
+/* Memory data structures (not stored directly) */
+ H5FS_section_class_t *sect_cls; /* Array of section classes for this free list */
+};
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* H5FS header inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_FSPACE_HDR[1];
+
+/* H5FS section info inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_FSPACE_SINFO[1];
+
+/* Declare a free list to manage the H5FS_node_t struct */
+H5FL_EXTERN(H5FS_node_t);
+
+/* Declare a free list to manage the H5FS_bin_t sequence information */
+H5FL_SEQ_EXTERN(H5FS_bin_t);
+
+/* Declare a free list to manage the H5FS_sinfo_t struct */
+H5FL_EXTERN(H5FS_sinfo_t);
+
+/* Declare a free list to manage the H5FS_t struct */
+H5FL_EXTERN(H5FS_t);
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Free space manager header routines */
+H5_DLL H5FS_t *H5FS_new(const H5F_t *f, size_t nclasses,
+ const H5FS_section_class_t *classes[], void *cls_init_udata);
+H5_DLL herr_t H5FS_incr(H5FS_t *fspace);
+H5_DLL herr_t H5FS_decr(H5FS_t *fspace);
+H5_DLL herr_t H5FS_dirty(H5FS_t *fspace);
+
+/* Free space section routines */
+H5_DLL H5FS_sinfo_t *H5FS_sinfo_new(H5F_t *f, H5FS_t *fspace);
+
+/* Routines for destroying structures */
+H5_DLL herr_t H5FS_hdr_dest(H5FS_t *hdr);
+H5_DLL herr_t H5FS_sinfo_dest(H5FS_sinfo_t *sinfo);
+
+/* Sanity check routines */
+#ifdef H5FS_DEBUG
+H5_DLL herr_t H5FS_assert(const H5FS_t *fspace);
+H5_DLL herr_t H5FS_sect_assert(const H5FS_t *fspace);
+#endif /* H5FS_DEBUG */
+
+/* Testing routines */
+#ifdef H5FS_TESTING
+H5_DLL herr_t H5FS_get_cparam_test(const H5FS_t *fh, H5FS_create_t *cparam);
+H5_DLL int H5FS_cmp_cparam_test(const H5FS_create_t *cparam1, const H5FS_create_t *cparam2);
+#endif /* H5FS_TESTING */
+
+#endif /* _H5FSpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5FSpublic.h b/Resources/windows-libs/HDF5/include/H5FSpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..d1bae94ade3cece623108b1362ce322ef2cd45ee
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FSpublic.h
@@ -0,0 +1,54 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5FSpublic.h
+ * May 2 2006
+ * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ *
+ * Purpose: Public declarations for the file free space package.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#ifndef _H5FSpublic_H
+#define _H5FSpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/**********************************/
+/* Public API Function Prototypes */
+/**********************************/
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5FSpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5FaccProp.h b/Resources/windows-libs/HDF5/include/H5FaccProp.h
new file mode 100644
index 0000000000000000000000000000000000000000..4042eba6f839ebfaeeac61b098022fed3b23a8a4
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FaccProp.h
@@ -0,0 +1,148 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// Class FileAccPropList represents the HDF5 file access property list and
+// inherits from DataType.
+
+#ifndef __H5FileAccPropList_H
+#define __H5FileAccPropList_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class FileAccPropList represents the HDF5 file access property list.
+class H5_DLLCPP FileAccPropList : public PropList {
+ public:
+ static const FileAccPropList DEFAULT;
+
+ // Creates a file access property list.
+ FileAccPropList();
+
+ // Modifies this property list to use the H5FD_STDIO driver
+ void setStdio() const;
+
+ // Set file driver for this property list
+ void setDriver(hid_t new_driver_id, const void *new_driver_info) const;
+
+ // Returns a low-level file driver identifier.
+ hid_t getDriver() const;
+
+ // Sets offset for family driver.
+ void setFamilyOffset(hsize_t offset) const;
+
+ // Gets offset for family driver.
+ hsize_t getFamilyOffset() const;
+
+ // Modifies this file access property list to use the sec2 driver.
+ void setSec2() const;
+
+ // Modifies this file access property list to use the H5FD_CORE
+ // driver.
+ void setCore (size_t increment, hbool_t backing_store) const;
+
+ // Queries H5FD_CORE driver properties.
+ void getCore (size_t& increment, hbool_t& backing_store) const;
+
+ // Sets this file access properties list to the family driver.
+ void setFamily( hsize_t memb_size, const FileAccPropList& memb_plist ) const;
+
+ // Returns information about the family file access property list.
+ void getFamily(hsize_t& memb_size, FileAccPropList& memb_plist) const;
+ FileAccPropList getFamily(hsize_t& memb_size) const;
+
+ // Emulates the old split file driver,
+ void setSplit(const FileAccPropList& meta_plist,
+ const FileAccPropList& raw_plist,
+ const char* meta_ext = ".meta",
+ const char* raw_ext = ".raw" ) const;
+ void setSplit(const FileAccPropList& meta_plist,
+ const FileAccPropList& raw_plist,
+ const H5std_string& meta_ext = ".meta",
+ const H5std_string& raw_ext = ".raw") const;
+ // These two overloaded functions are kept for backward compatibility
+ // only; they missed the const's and will be removed in future release.
+ void setSplit(FileAccPropList& meta_plist, FileAccPropList& raw_plist,
+ const char* meta_ext=".meta", const char* raw_ext=".raw") const;
+ void setSplit(FileAccPropList& meta_plist, FileAccPropList& raw_plist,
+ const H5std_string& meta_ext=".meta",
+ const H5std_string& raw_ext=".raw") const;
+
+ // Sets the maximum size of the data sieve buffer.
+ void setSieveBufSize(size_t bufsize) const;
+
+ // Returns the current settings for the data sieve buffer size
+ // property
+ size_t getSieveBufSize() const;
+
+ // Sets the minimum size of metadata block allocations.
+ void setMetaBlockSize(hsize_t &block_size) const;
+
+ // Returns the current metadata block size setting.
+ hsize_t getMetaBlockSize() const;
+
+ // Modifies this file access property list to use the logging driver.
+ void setLog(const char *logfile, unsigned flags, size_t buf_size) const;
+ void setLog(const H5std_string& logfile, unsigned flags, size_t buf_size) const;
+
+ // Sets alignment properties of this file access property list
+ void setAlignment( hsize_t threshold = 1, hsize_t alignment = 1 ) const;
+
+ // Retrieves the current settings for alignment properties from
+ // this property list.
+ void getAlignment( hsize_t& threshold, hsize_t& alignment ) const;
+
+ // Sets data type for multi driver.
+ void setMultiType(H5FD_mem_t dtype) const;
+
+ // Returns the data type property for MULTI driver.
+ H5FD_mem_t getMultiType() const;
+
+ // Sets the meta data cache and raw data chunk cache parameters.
+ void setCache( int mdc_nelmts, size_t rdcc_nelmts, size_t rdcc_nbytes, double rdcc_w0 ) const;
+
+ // Queries the meta data cache and raw data chunk cache parameters.
+ void getCache( int& mdc_nelmts, size_t& rdcc_nelmts, size_t& rdcc_nbytes, double& rdcc_w0 ) const;
+
+ // Sets the degree for the file close behavior.
+ void setFcloseDegree(H5F_close_degree_t degree);
+
+ // Returns the degree for the file close behavior.
+ H5F_close_degree_t getFcloseDegree();
+
+ // Sets garbage collecting references flag.
+ void setGcReferences( unsigned gc_ref = 0 ) const;
+
+ // Returns garbage collecting references setting.
+ unsigned getGcReferences() const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("FileAccPropList"); }
+
+ // Copy constructor: creates a copy of a FileAccPropList object.
+ FileAccPropList( const FileAccPropList& original );
+
+ // Creates a copy of an existing file access property list
+ // using the property list id.
+ FileAccPropList (const hid_t plist_id);
+
+ // Noop destructor
+ virtual ~FileAccPropList();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5FileAccPropList_H
diff --git a/Resources/windows-libs/HDF5/include/H5FcreatProp.h b/Resources/windows-libs/HDF5/include/H5FcreatProp.h
new file mode 100644
index 0000000000000000000000000000000000000000..4149880cd7ca6d90ff086df7bcdcd3c9e498ae08
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FcreatProp.h
@@ -0,0 +1,79 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5FileCreatPropList_H
+#define __H5FileCreatPropList_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class FileCreatPropList represents the HDF5 file create property list.
+class H5_DLLCPP FileCreatPropList : public PropList {
+ public:
+ // Default file creation property list.
+ static const FileCreatPropList DEFAULT;
+
+ // Creates a file create property list.
+ FileCreatPropList();
+
+ // Retrieves version information for various parts of a file.
+ void getVersion( unsigned& super, unsigned& freelist, unsigned& stab, unsigned& shhdr ) const;
+
+ // Sets the userblock size field of a file creation property list.
+ void setUserblock( hsize_t size ) const;
+
+ // Gets the size of a user block in this file creation property list.
+ hsize_t getUserblock() const;
+
+ // Retrieves the size-of address and size quantities stored in a
+ // file according to this file creation property list.
+ void getSizes( size_t& sizeof_addr, size_t& sizeof_size ) const;
+
+ // Sets file size-of addresses and sizes.
+ void setSizes( size_t sizeof_addr = 4, size_t sizeof_size = 4 ) const;
+
+ // Retrieves the size of the symbol table B-tree 1/2 rank and the
+ // symbol table leaf node 1/2 size.
+ void getSymk( unsigned& int_nodes_k, unsigned& leaf_nodes_k ) const;
+
+ // Sets the size of parameters used to control the symbol table nodes.
+ void setSymk( unsigned int_nodes_k, unsigned leaf_nodes_k ) const;
+
+ // Returns the 1/2 rank of an indexed storage B-tree.
+ unsigned getIstorek() const;
+
+ // Sets the size of parameter used to control the B-trees for
+ // indexing chunked datasets.
+ void setIstorek( unsigned ik ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("FileCreatPropList"); }
+
+ // Copy constructor: creates a copy of a FileCreatPropList object.
+ FileCreatPropList(const FileCreatPropList& orig);
+
+ // Creates a copy of an existing file create property list
+ // using the property list id.
+ FileCreatPropList (const hid_t plist_id);
+
+ // Noop destructor
+ virtual ~FileCreatPropList();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5FileCreatPropList_H
diff --git a/Resources/windows-libs/HDF5/include/H5File.h b/Resources/windows-libs/HDF5/include/H5File.h
new file mode 100644
index 0000000000000000000000000000000000000000..0ef85b58a168c0f22fb785c931d155beebf0089e
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5File.h
@@ -0,0 +1,124 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5File_H
+#define __H5File_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class H5File
+ \brief Class H5File represents an HDF5 file.
+
+ It inherits from H5Location and CommonFG.
+*/
+class H5_DLLCPP H5File : public H5Location, public CommonFG {
+ public:
+ // Creates or opens an HDF5 file.
+ H5File( const char* name, unsigned int flags,
+ const FileCreatPropList& create_plist = FileCreatPropList::DEFAULT,
+ const FileAccPropList& access_plist = FileAccPropList::DEFAULT );
+ H5File( const H5std_string& name, unsigned int flags,
+ const FileCreatPropList& create_plist = FileCreatPropList::DEFAULT,
+ const FileAccPropList& access_plist = FileAccPropList::DEFAULT );
+
+ // Open the file
+ void openFile(const H5std_string& name, unsigned int flags,
+ const FileAccPropList& access_plist = FileAccPropList::DEFAULT);
+ void openFile(const char* name, unsigned int flags,
+ const FileAccPropList& access_plist = FileAccPropList::DEFAULT);
+
+ // Close this file.
+ virtual void close();
+
+ // Gets the access property list of this file.
+ FileAccPropList getAccessPlist() const;
+
+ // Gets the creation property list of this file.
+ FileCreatPropList getCreatePlist() const;
+
+ // Retrieves the file size of an opened file.
+ hsize_t getFileSize() const;
+
+ // Returns the amount of free space in the file.
+ hssize_t getFreeSpace() const;
+
+ // Returns the number of opened object IDs (files, datasets, groups
+ // and datatypes) in the same file.
+ ssize_t getObjCount(unsigned types) const;
+ ssize_t getObjCount() const;
+
+ // Retrieves a list of opened object IDs (files, datasets, groups
+ // and datatypes) in the same file.
+ void getObjIDs(unsigned types, size_t max_objs, hid_t *oid_list) const;
+
+ // Returns the pointer to the file handle of the low-level file driver.
+ void getVFDHandle(void **file_handle) const;
+ void getVFDHandle(const FileAccPropList& fapl, void **file_handle) const;
+ void getVFDHandle(FileAccPropList& fapl, void **file_handle) const; // kept for backward compatibility
+
+ // Determines if a file, specified by its name, is in HDF5 format
+ static bool isHdf5(const char* name );
+ static bool isHdf5(const H5std_string& name );
+
+ // Reopens this file.
+ void reOpen(); // added for better name
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ void reopen(); // obsolete in favor of reOpen()
+
+ // Gets the file id
+ virtual hid_t getLocId() const;
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("H5File"); }
+
+ // Throw file exception.
+ virtual void throwException(const H5std_string& func_name, const H5std_string& msg) const;
+
+ // Default constructor
+ H5File();
+
+ // Copy constructor: makes a copy of the original H5File object.
+ H5File(const H5File& original);
+
+ // Gets the HDF5 file id.
+ virtual hid_t getId() const;
+
+ // H5File destructor.
+ virtual ~H5File();
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Sets the HDF5 file id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ private:
+ hid_t id; // HDF5 file id
+
+ // This function is private and contains common code between the
+ // constructors taking a string or a char*
+ void p_get_file( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist );
+
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5File_H
diff --git a/Resources/windows-libs/HDF5/include/H5FloatType.h b/Resources/windows-libs/HDF5/include/H5FloatType.h
new file mode 100644
index 0000000000000000000000000000000000000000..4d5de171fe4ba2e23e48f42597cf5368530b1a09
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5FloatType.h
@@ -0,0 +1,75 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5FloatType_H
+#define __H5FloatType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class FloatType operates on HDF5 floating point datatype.
+class H5_DLLCPP FloatType : public AtomType {
+ public:
+ // Creates a floating-point type using a predefined type.
+ FloatType( const PredType& pred_type );
+
+ // Gets the floating-point datatype of the specified dataset.
+ FloatType( const DataSet& dataset );
+
+ // Retrieves the exponent bias of a floating-point type.
+ size_t getEbias() const;
+
+ // Sets the exponent bias of a floating-point type.
+ void setEbias( size_t ebias ) const;
+
+ // Retrieves floating point datatype bit field information.
+ void getFields( size_t& spos, size_t& epos, size_t& esize, size_t& mpos, size_t& msize ) const;
+
+ // Sets locations and sizes of floating point bit fields.
+ void setFields( size_t spos, size_t epos, size_t esize, size_t mpos, size_t msize ) const;
+
+ // Retrieves the internal padding type for unused bits in floating-point datatypes.
+ H5T_pad_t getInpad( H5std_string& pad_string ) const;
+
+ // Fills unused internal floating point bits.
+ void setInpad( H5T_pad_t inpad ) const;
+
+ // Retrieves mantissa normalization of a floating-point datatype.
+ H5T_norm_t getNorm( H5std_string& norm_string ) const;
+
+ // Sets the mantissa normalization of a floating-point datatype.
+ void setNorm( H5T_norm_t norm ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("FloatType"); }
+
+ // Default constructor
+ FloatType();
+
+ // Creates a floating-point datatype using an existing id.
+ FloatType( const hid_t existing_id );
+
+ // Copy constructor: makes a copy of the original FloatType object.
+ FloatType( const FloatType& original );
+
+ // Noop destructor.
+ virtual ~FloatType();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5FloatType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Fpkg.h b/Resources/windows-libs/HDF5/include/H5Fpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..1f10dbc88bcc62c5e73d8c505fb6f8887343b4f2
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Fpkg.h
@@ -0,0 +1,347 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Thursday, September 28, 2000
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5F package. Source files outside the H5F package should
+ * include H5Fprivate.h instead.
+ */
+#ifndef H5F_PACKAGE
+#error "Do not include this file outside the H5F package!"
+#endif
+
+#ifndef _H5Fpkg_H
+#define _H5Fpkg_H
+
+/* Get package's private header */
+#include "H5Fprivate.h"
+
+/* Other public headers needed by this file */
+#include "H5Bpublic.h" /* B-tree header, for H5B_NUM_BTREE_ID */
+
+/* Other private headers needed by this file */
+#include "H5private.h" /* Generic Functions */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5FOprivate.h" /* File objects */
+#include "H5FSprivate.h" /* File free space */
+#include "H5Gprivate.h" /* Groups */
+#include "H5Oprivate.h" /* Object header messages */
+#include "H5RCprivate.h" /* Reference counted object functions */
+
+
+/*
+ * Feature: Define this constant on the compiler command-line if you want to
+ * see some debugging messages on the debug stream.
+ */
+#ifdef NDEBUG
+# undef H5F_DEBUG
+#endif
+
+/* Define the HDF5 file signature */
+#define H5F_SIGNATURE "\211HDF\r\n\032\n"
+#define H5F_SIGNATURE_LEN 8
+
+/* Superblock status flags */
+#define H5F_SUPER_WRITE_ACCESS 0x01
+#define H5F_SUPER_FILE_OK 0x02
+#define H5F_SUPER_ALL_FLAGS (H5F_SUPER_WRITE_ACCESS | H5F_SUPER_FILE_OK)
+
+/* Mask for removing private file access flags */
+#define H5F_ACC_PUBLIC_FLAGS 0x001fu
+
+/* Free space section+aggregator merge flags */
+#define H5F_FS_MERGE_METADATA 0x01 /* Section can merge with metadata aggregator */
+#define H5F_FS_MERGE_RAWDATA 0x02 /* Section can merge with small 'raw' data aggregator */
+
+/* Macro to abstract checking whether file is using a free space manager */
+#define H5F_HAVE_FREE_SPACE_MANAGER(F) TRUE /* Currently always have a free space manager */
+
+/* Macros for encoding/decoding superblock */
+#define H5F_MAX_DRVINFOBLOCK_SIZE 1024 /* Maximum size of superblock driver info buffer */
+#define H5F_DRVINFOBLOCK_HDR_SIZE 16 /* Size of superblock driver info header */
+
+/* Superblock sizes for various versions */
+#define H5F_SIZEOF_CHKSUM 4 /* Checksum size in the file */
+
+/* Fixed-size portion at the beginning of all superblocks */
+#define H5F_SUPERBLOCK_FIXED_SIZE ( H5F_SIGNATURE_LEN \
+ + 1) /* superblock version */
+
+/* Macros for computing variable-size superblock size */
+#define H5F_SUPERBLOCK_VARLEN_SIZE_COMMON \
+ (2 /* freespace, and root group versions */ \
+ + 1 /* reserved */ \
+ + 3 /* shared header vers, size of address, size of lengths */ \
+ + 1 /* reserved */ \
+ + 4 /* group leaf k, group internal k */ \
+ + 4) /* consistency flags */
+#define H5F_SUPERBLOCK_VARLEN_SIZE_V0(f) \
+ ( H5F_SUPERBLOCK_VARLEN_SIZE_COMMON /* Common variable-length info */ \
+ + H5F_SIZEOF_ADDR(f) /* base address */ \
+ + H5F_SIZEOF_ADDR(f) /* <unused> */ \
+ + H5F_SIZEOF_ADDR(f) /* EOF address */ \
+ + H5F_SIZEOF_ADDR(f) /* driver block address */ \
+ + H5G_SIZEOF_ENTRY(f)) /* root group ptr */
+#define H5F_SUPERBLOCK_VARLEN_SIZE_V1(f) \
+ ( H5F_SUPERBLOCK_VARLEN_SIZE_COMMON /* Common variable-length info */ \
+ + 2 /* indexed B-tree internal k */ \
+ + 2 /* reserved */ \
+ + H5F_SIZEOF_ADDR(f) /* base address */ \
+ + H5F_SIZEOF_ADDR(f) /* <unused> */ \
+ + H5F_SIZEOF_ADDR(f) /* EOF address */ \
+ + H5F_SIZEOF_ADDR(f) /* driver block address */ \
+ + H5G_SIZEOF_ENTRY(f)) /* root group ptr */
+#define H5F_SUPERBLOCK_VARLEN_SIZE_V2(f) \
+ ( 2 /* size of address, size of lengths */ \
+ + 1 /* consistency flags */ \
+ + H5F_SIZEOF_ADDR(f) /* base address */ \
+ + H5F_SIZEOF_ADDR(f) /* superblock extension address */ \
+ + H5F_SIZEOF_ADDR(f) /* EOF address */ \
+ + H5F_SIZEOF_ADDR(f) /* root group object header address */ \
+ + H5F_SIZEOF_CHKSUM) /* superblock checksum (keep this last) */
+#define H5F_SUPERBLOCK_VARLEN_SIZE(v, f) ( \
+ (v == 0 ? H5F_SUPERBLOCK_VARLEN_SIZE_V0(f) : 0) \
+ + (v == 1 ? H5F_SUPERBLOCK_VARLEN_SIZE_V1(f) : 0) \
+ + (v == 2 ? H5F_SUPERBLOCK_VARLEN_SIZE_V2(f) : 0))
+
+/* Total size of superblock, depends on superblock version */
+#define H5F_SUPERBLOCK_SIZE(v, f) ( H5F_SUPERBLOCK_FIXED_SIZE \
+ + H5F_SUPERBLOCK_VARLEN_SIZE(v, f))
+
+
+/* Forward declaration external file cache struct used below (defined in
+ * H5Fefc.c) */
+typedef struct H5F_efc_t H5F_efc_t;
+
+/* Structure for metadata & "small [raw] data" block aggregation fields */
+struct H5F_blk_aggr_t {
+ unsigned long feature_flag; /* Feature flag type */
+ hsize_t alloc_size; /* Size for allocating new blocks */
+ hsize_t tot_size; /* Total amount of bytes aggregated into block */
+ hsize_t size; /* Current size of block left */
+ haddr_t addr; /* Location of block left */
+};
+
+/* Structure for metadata accumulator fields */
+typedef struct H5F_meta_accum_t {
+ unsigned char *buf; /* Buffer to hold the accumulated metadata */
+ haddr_t loc; /* File location (offset) of the accumulated metadata */
+ size_t size; /* Size of the accumulated metadata buffer used (in bytes) */
+ size_t alloc_size; /* Size of the accumulated metadata buffer allocated (in bytes) */
+ size_t dirty_off; /* Offset of the dirty region in the accumulator buffer */
+ size_t dirty_len; /* Length of the dirty region in the accumulator buffer */
+ hbool_t dirty; /* Flag to indicate that the accumulated metadata is dirty */
+} H5F_meta_accum_t;
+
+/* Enum for free space manager state */
+typedef enum H5F_fs_state_t {
+ H5F_FS_STATE_CLOSED, /* Free space manager is closed */
+ H5F_FS_STATE_OPEN, /* Free space manager has been opened */
+ H5F_FS_STATE_DELETING /* Free space manager is being deleted */
+} H5F_fs_state_t;
+
+/* A record of the mount table */
+typedef struct H5F_mount_t {
+ struct H5G_t *group; /* Mount point group held open */
+ struct H5F_t *file; /* File mounted at that point */
+} H5F_mount_t;
+
+/*
+ * The mount table describes what files are attached to (mounted on) the file
+ * to which this table belongs.
+ */
+typedef struct H5F_mtab_t {
+ unsigned nmounts;/* Number of children which are mounted */
+ unsigned nalloc; /* Number of mount slots allocated */
+ H5F_mount_t *child; /* An array of mount records */
+} H5F_mtab_t;
+
+/* Structure specifically to store superblock. This was originally
+ * maintained entirely within H5F_file_t, but is now extracted
+ * here because the superblock is now handled by the cache */
+typedef struct H5F_super_t {
+ H5AC_info_t cache_info; /* Cache entry information structure */
+ unsigned super_vers; /* Superblock version */
+ uint8_t status_flags; /* File status flags */
+ unsigned sym_leaf_k; /* Size of leaves in symbol tables */
+ unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree key values for each type */
+ haddr_t base_addr; /* Absolute base address for rel.addrs. */
+ /* (superblock for file is at this offset) */
+ haddr_t ext_addr; /* Relative address of superblock extension */
+ haddr_t driver_addr; /* File driver information block address */
+ haddr_t root_addr; /* Root group address */
+ H5G_entry_t *root_ent; /* Root group symbol table entry */
+} H5F_super_t;
+
+/*
+ * Define the structure to store the file information for HDF5 files. One of
+ * these structures is allocated per file, not per H5Fopen(). That is, set of
+ * H5F_t structs can all point to the same H5F_file_t struct. The `nrefs'
+ * count in this struct indicates the number of H5F_t structs which are
+ * pointing to this struct.
+ */
+struct H5F_file_t {
+ H5FD_t *lf; /* Lower level file handle for I/O */
+ H5F_super_t *sblock; /* Pointer to (pinned) superblock for file */
+ unsigned nrefs; /* Ref count for times file is opened */
+ unsigned flags; /* Access Permissions for file */
+ H5F_mtab_t mtab; /* File mount table */
+ H5F_efc_t *efc; /* External file cache */
+
+ /* Cached values from FCPL/superblock */
+ uint8_t sizeof_addr; /* Size of addresses in file */
+ uint8_t sizeof_size; /* Size of offsets in file */
+ haddr_t sohm_addr; /* Relative address of shared object header message table */
+ unsigned sohm_vers; /* Version of shared message table on disk */
+ unsigned sohm_nindexes; /* Number of shared messages indexes in the table */
+ unsigned long feature_flags; /* VFL Driver feature Flags */
+ haddr_t maxaddr; /* Maximum address for file */
+
+ H5AC_t *cache; /* The object cache */
+ H5AC_cache_config_t
+ mdc_initCacheCfg; /* initial configuration for the */
+ /* metadata cache. This structure is */
+ /* fixed at creation time and should */
+ /* not change thereafter. */
+ hid_t fcpl_id; /* File creation property list ID */
+ H5F_close_degree_t fc_degree; /* File close behavior degree */
+ size_t rdcc_nslots; /* Size of raw data chunk cache (slots) */
+ size_t rdcc_nbytes; /* Size of raw data chunk cache (bytes) */
+ double rdcc_w0; /* Preempt read chunks first? [0.0..1.0]*/
+ size_t sieve_buf_size; /* Size of the data sieve buffer allocated (in bytes) */
+ hsize_t threshold; /* Threshold for alignment */
+ hsize_t alignment; /* Alignment */
+ unsigned gc_ref; /* Garbage-collect references? */
+ hbool_t latest_format; /* Always use the latest format? */
+ hbool_t store_msg_crt_idx; /* Store creation index for object header messages? */
+ unsigned ncwfs; /* Num entries on cwfs list */
+ struct H5HG_heap_t **cwfs; /* Global heap cache */
+ struct H5G_t *root_grp; /* Open root group */
+ H5FO_t *open_objs; /* Open objects in file */
+ H5RC_t *grp_btree_shared; /* Ref-counted group B-tree node info */
+
+ /* File space allocation information */
+ hbool_t use_tmp_space; /* Whether temp. file space allocation is allowed */
+ haddr_t tmp_addr; /* Next address to use for temp. space in the file */
+ unsigned fs_aggr_merge[H5FD_MEM_NTYPES]; /* Flags for whether free space can merge with aggregator(s) */
+ H5F_fs_state_t fs_state[H5FD_MEM_NTYPES]; /* State of free space manager for each type */
+ haddr_t fs_addr[H5FD_MEM_NTYPES]; /* Address of free space manager info for each type */
+ H5FS_t *fs_man[H5FD_MEM_NTYPES]; /* Free space manager for each file space type */
+ H5FD_mem_t fs_type_map[H5FD_MEM_NTYPES]; /* Mapping of "real" file space type into tracked type */
+ H5F_blk_aggr_t meta_aggr; /* Metadata aggregation info */
+ /* (if aggregating metadata allocations) */
+ H5F_blk_aggr_t sdata_aggr; /* "Small data" aggregation info */
+ /* (if aggregating "small data" allocations) */
+
+ /* Metadata accumulator information */
+ H5F_meta_accum_t accum; /* Metadata accumulator info */
+};
+
+/*
+ * This is the top-level file descriptor. One of these structures is
+ * allocated every time H5Fopen() is called although they may contain pointers
+ * to shared H5F_file_t structs.
+ */
+struct H5F_t {
+ char *open_name; /* Name used to open file */
+ char *actual_name; /* Actual name of the file, after resolving symlinks, etc. */
+ char *extpath; /* Path for searching target external link file */
+ H5F_file_t *shared; /* The shared file info */
+ unsigned nopen_objs; /* Number of open object headers*/
+ H5FO_t *obj_count; /* # of time each object is opened through top file structure */
+ hid_t file_id; /* ID of this file */
+ hbool_t closing; /* File is in the process of being closed */
+ struct H5F_t *parent; /* Parent file that this file is mounted to */
+ unsigned nmounts; /* Number of children mounted to this file */
+};
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* Declare a free list to manage the H5F_t struct */
+H5FL_EXTERN(H5F_t);
+
+/* Declare a free list to manage the H5F_file_t struct */
+H5FL_EXTERN(H5F_file_t);
+
+H5_DLLVAR const H5AC_class_t H5AC_SUPERBLOCK[1];
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* General routines */
+H5_DLL herr_t H5F_init(void);
+H5_DLL herr_t H5F__term_deprec_interface(void);
+H5_DLL herr_t H5F_locate_signature(H5FD_t *file, hid_t dxpl_id, haddr_t *sig_addr);
+H5_DLL herr_t H5F_flush(H5F_t *f, hid_t dxpl_id, hbool_t closing);
+
+/* File mount related routines */
+H5_DLL herr_t H5F_close_mounts(H5F_t *f);
+H5_DLL int H5F_term_unmount_cb(void *obj_ptr, hid_t obj_id, void *key);
+H5_DLL herr_t H5F_mount_count_ids(H5F_t *f, unsigned *nopen_files, unsigned *nopen_objs);
+
+/* Superblock related routines */
+H5_DLL herr_t H5F_super_init(H5F_t *f, hid_t dxpl_id);
+H5_DLL herr_t H5F_super_read(H5F_t *f, hid_t dxpl_id);
+H5_DLL herr_t H5F_super_size(H5F_t *f, hid_t dxpl_id, hsize_t *super_size,
+ hsize_t *super_ext_info);
+H5_DLL herr_t H5F_super_free(H5F_super_t *sblock);
+
+/* Superblock extension related routines */
+H5_DLL herr_t H5F_super_ext_open(H5F_t *f, haddr_t ext_addr, H5O_loc_t *ext_ptr);
+H5_DLL herr_t H5F_super_ext_write_msg(H5F_t *f, hid_t dxpl_id, void *mesg, unsigned id, hbool_t may_create);
+H5_DLL herr_t H5F_super_ext_close(H5F_t *f, H5O_loc_t *ext_ptr, hid_t dxpl_id,
+ hbool_t was_created);
+
+/* Metadata accumulator routines */
+H5_DLL herr_t H5F_accum_read(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type,
+ haddr_t addr, size_t size, void *buf);
+H5_DLL herr_t H5F_accum_write(const H5F_t *f, hid_t dxpl_id, H5FD_mem_t type,
+ haddr_t addr, size_t size, const void *buf);
+H5_DLL herr_t H5F_accum_free(H5F_t *f, hid_t dxpl_id, H5FD_mem_t type,
+ haddr_t addr, hsize_t size);
+H5_DLL herr_t H5F_accum_flush(const H5F_t *f, hid_t dxpl_id);
+H5_DLL herr_t H5F_accum_reset(const H5F_t *f, hid_t dxpl_id, hbool_t flush);
+
+/* Shared file list related routines */
+H5_DLL herr_t H5F_sfile_add(H5F_file_t *shared);
+H5_DLL H5F_file_t * H5F_sfile_search(H5FD_t *lf);
+H5_DLL herr_t H5F_sfile_remove(H5F_file_t *shared);
+
+/* External file cache routines */
+H5_DLL H5F_efc_t *H5F_efc_create(unsigned max_nfiles);
+H5_DLL unsigned H5F_efc_max_nfiles(H5F_efc_t *efc);
+H5_DLL herr_t H5F_efc_release(H5F_efc_t *efc);
+H5_DLL herr_t H5F_efc_destroy(H5F_efc_t *efc);
+H5_DLL herr_t H5F_efc_try_close(H5F_t *f);
+
+/* Testing functions */
+#ifdef H5F_TESTING
+H5_DLL herr_t H5F_get_sohm_mesg_count_test(hid_t fid, unsigned type_id,
+ size_t *mesg_count);
+H5_DLL herr_t H5F_check_cached_stab_test(hid_t file_id);
+H5_DLL herr_t H5F_get_maxaddr_test(hid_t file_id, haddr_t *maxaddr);
+#endif /* H5F_TESTING */
+
+#endif /* _H5Fpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Fpublic.h b/Resources/windows-libs/HDF5/include/H5Fpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..8466a26aa6c28d9c309c70a4d0129b0af533254d
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Fpublic.h
@@ -0,0 +1,196 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5F module.
+ */
+#ifndef _H5Fpublic_H
+#define _H5Fpublic_H
+
+/* Public header files needed by this file */
+#include "H5public.h"
+#include "H5ACpublic.h"
+#include "H5Ipublic.h"
+
+/* When this header is included from a private header, don't make calls to H5check() */
+#undef H5CHECK
+#ifndef _H5private_H
+#define H5CHECK H5check(),
+#else /* _H5private_H */
+#define H5CHECK
+#endif /* _H5private_H */
+
+/*
+ * These are the bits that can be passed to the `flags' argument of
+ * H5Fcreate() and H5Fopen(). Use the bit-wise OR operator (|) to combine
+ * them as needed. As a side effect, they call H5check_version() to make sure
+ * that the application is compiled with a version of the hdf5 header files
+ * which are compatible with the library to which the application is linked.
+ * We're assuming that these constants are used rather early in the hdf5
+ * session.
+ *
+ */
+#define H5F_ACC_RDONLY (H5CHECK 0x0000u) /*absence of rdwr => rd-only */
+#define H5F_ACC_RDWR (H5CHECK 0x0001u) /*open for read and write */
+#define H5F_ACC_TRUNC (H5CHECK 0x0002u) /*overwrite existing files */
+#define H5F_ACC_EXCL (H5CHECK 0x0004u) /*fail if file already exists*/
+#define H5F_ACC_DEBUG (H5CHECK 0x0008u) /*print debug info */
+#define H5F_ACC_CREAT (H5CHECK 0x0010u) /*create non-existing files */
+
+/* Value passed to H5Pset_elink_acc_flags to cause flags to be taken from the
+ * parent file. */
+#define H5F_ACC_DEFAULT (H5CHECK 0xffffu) /*ignore setting on lapl */
+
+/* Flags for H5Fget_obj_count() & H5Fget_obj_ids() calls */
+#define H5F_OBJ_FILE (0x0001u) /* File objects */
+#define H5F_OBJ_DATASET (0x0002u) /* Dataset objects */
+#define H5F_OBJ_GROUP (0x0004u) /* Group objects */
+#define H5F_OBJ_DATATYPE (0x0008u) /* Named datatype objects */
+#define H5F_OBJ_ATTR (0x0010u) /* Attribute objects */
+#define H5F_OBJ_ALL (H5F_OBJ_FILE|H5F_OBJ_DATASET|H5F_OBJ_GROUP|H5F_OBJ_DATATYPE|H5F_OBJ_ATTR)
+#define H5F_OBJ_LOCAL (0x0020u) /* Restrict search to objects opened through current file ID */
+ /* (as opposed to objects opened through any file ID accessing this file) */
+
+#define H5F_FAMILY_DEFAULT (hsize_t)0
+
+#ifdef H5_HAVE_PARALLEL
+/*
+ * Use this constant string as the MPI_Info key to set H5Fmpio debug flags.
+ * To turn on H5Fmpio debug flags, set the MPI_Info value with this key to
+ * have the value of a string consisting of the characters that turn on the
+ * desired flags.
+ */
+#define H5F_MPIO_DEBUG_KEY "H5F_mpio_debug_key"
+#endif /* H5_HAVE_PARALLEL */
+
+/* The difference between a single file and a set of mounted files */
+typedef enum H5F_scope_t {
+ H5F_SCOPE_LOCAL = 0, /*specified file handle only */
+ H5F_SCOPE_GLOBAL = 1 /*entire virtual file */
+} H5F_scope_t;
+
+/* Unlimited file size for H5Pset_external() */
+#define H5F_UNLIMITED ((hsize_t)(-1L))
+
+/* How does file close behave?
+ * H5F_CLOSE_DEFAULT - Use the degree pre-defined by underlining VFL
+ * H5F_CLOSE_WEAK - file closes only after all opened objects are closed
+ * H5F_CLOSE_SEMI - if no opened objects, file is close; otherwise, file
+ close fails
+ * H5F_CLOSE_STRONG - if there are opened objects, close them first, then
+ close file
+ */
+typedef enum H5F_close_degree_t {
+ H5F_CLOSE_DEFAULT = 0,
+ H5F_CLOSE_WEAK = 1,
+ H5F_CLOSE_SEMI = 2,
+ H5F_CLOSE_STRONG = 3
+} H5F_close_degree_t;
+
+/* Current "global" information about file */
+/* (just size info currently) */
+typedef struct H5F_info_t {
+ hsize_t super_ext_size; /* Superblock extension size */
+ struct {
+ hsize_t hdr_size; /* Shared object header message header size */
+ H5_ih_info_t msgs_info; /* Shared object header message index & heap size */
+ } sohm;
+} H5F_info_t;
+
+/*
+ * Types of allocation requests. The values larger than H5FD_MEM_DEFAULT
+ * should not change other than adding new types to the end. These numbers
+ * might appear in files.
+ *
+ * Note: please change the log VFD flavors array if you change this
+ * enumeration.
+ */
+typedef enum H5F_mem_t {
+ H5FD_MEM_NOLIST = -1, /* Data should not appear in the free list.
+ * Must be negative.
+ */
+ H5FD_MEM_DEFAULT = 0, /* Value not yet set. Can also be the
+ * datatype set in a larger allocation
+ * that will be suballocated by the library.
+ * Must be zero.
+ */
+ H5FD_MEM_SUPER = 1, /* Superblock data */
+ H5FD_MEM_BTREE = 2, /* B-tree data */
+ H5FD_MEM_DRAW = 3, /* Raw data (content of datasets, etc.) */
+ H5FD_MEM_GHEAP = 4, /* Global heap data */
+ H5FD_MEM_LHEAP = 5, /* Local heap data */
+ H5FD_MEM_OHDR = 6, /* Object header data */
+
+ H5FD_MEM_NTYPES /* Sentinel value - must be last */
+} H5F_mem_t;
+
+/* Library's file format versions */
+typedef enum H5F_libver_t {
+ H5F_LIBVER_EARLIEST, /* Use the earliest possible format for storing objects */
+ H5F_LIBVER_LATEST /* Use the latest possible format available for storing objects*/
+} H5F_libver_t;
+
+/* Define file format version for 1.8 to prepare for 1.10 release.
+ * (Not used anywhere now)*/
+#define H5F_LIBVER_18 H5F_LIBVER_LATEST
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5F.c */
+H5_DLL htri_t H5Fis_hdf5(const char *filename);
+H5_DLL hid_t H5Fcreate(const char *filename, unsigned flags,
+ hid_t create_plist, hid_t access_plist);
+H5_DLL hid_t H5Fopen(const char *filename, unsigned flags,
+ hid_t access_plist);
+H5_DLL hid_t H5Freopen(hid_t file_id);
+H5_DLL herr_t H5Fflush(hid_t object_id, H5F_scope_t scope);
+H5_DLL herr_t H5Fclose(hid_t file_id);
+H5_DLL hid_t H5Fget_create_plist(hid_t file_id);
+H5_DLL hid_t H5Fget_access_plist(hid_t file_id);
+H5_DLL herr_t H5Fget_intent(hid_t file_id, unsigned * intent);
+H5_DLL ssize_t H5Fget_obj_count(hid_t file_id, unsigned types);
+H5_DLL ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list);
+H5_DLL herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle);
+H5_DLL herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist);
+H5_DLL herr_t H5Funmount(hid_t loc, const char *name);
+H5_DLL hssize_t H5Fget_freespace(hid_t file_id);
+H5_DLL herr_t H5Fget_filesize(hid_t file_id, hsize_t *size);
+H5_DLL ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len);
+H5_DLL herr_t H5Fget_mdc_config(hid_t file_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Fset_mdc_config(hid_t file_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr);
+H5_DLL herr_t H5Fget_mdc_size(hid_t file_id,
+ size_t * max_size_ptr,
+ size_t * min_clean_size_ptr,
+ size_t * cur_size_ptr,
+ int * cur_num_entries_ptr);
+H5_DLL herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id);
+H5_DLL ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size);
+H5_DLL herr_t H5Fget_info(hid_t obj_id, H5F_info_t *bh_info);
+H5_DLL herr_t H5Fclear_elink_file_cache(hid_t file_id);
+#ifdef H5_HAVE_PARALLEL
+H5_DLL herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag);
+H5_DLL herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag);
+#endif /* H5_HAVE_PARALLEL */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Fpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Gpkg.h b/Resources/windows-libs/HDF5/include/H5Gpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..b194adb19f001b0e2bf9458cbcd5f65cbfdbcf34
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Gpkg.h
@@ -0,0 +1,539 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Thursday, September 18, 1997
+ *
+ * Purpose: This file contains declarations which are visible
+ * only within the H5G package. Source files outside the
+ * H5G package should include H5Gprivate.h instead.
+ */
+#ifndef H5G_PACKAGE
+#error "Do not include this file outside the H5G package!"
+#endif
+
+#ifndef _H5Gpkg_H
+#define _H5Gpkg_H
+
+/* Get package's private header */
+#include "H5Gprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5B2private.h" /* v2 B-trees */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5HFprivate.h" /* Fractal heaps */
+#include "H5HLprivate.h" /* Local Heaps */
+#include "H5Oprivate.h" /* Object headers */
+#include "H5SLprivate.h" /* Skip lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Standard length of fractal heap ID for link */
+#define H5G_DENSE_FHEAP_ID_LEN 7
+
+/* Size of a symbol table node on disk */
+#define H5G_NODE_SIZE(f) ( \
+ /* General metadata fields */ \
+ H5_SIZEOF_MAGIC \
+ + 1 /* Version */ \
+ + 1 /* Reserved */ \
+ + 2 /* Number of symbols */ \
+ \
+ /* Entries */ \
+ + ((2 * H5F_SYM_LEAF_K(f)) * H5G_SIZEOF_ENTRY(f)) \
+ )
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/*
+ * Various types of object header information can be cached in a symbol
+ * table entry (it's normal home is the object header to which the entry
+ * points). This datatype determines what (if anything) is cached in the
+ * symbol table entry.
+ */
+typedef enum H5G_cache_type_t {
+ H5G_CACHED_ERROR = -1, /*force enum to be signed */
+ H5G_NOTHING_CACHED = 0, /*nothing is cached, must be 0 */
+ H5G_CACHED_STAB = 1, /*symbol table, `stab' */
+ H5G_CACHED_SLINK = 2, /*symbolic link */
+
+ H5G_NCACHED /*THIS MUST BE LAST */
+} H5G_cache_type_t;
+
+/*
+ * A symbol table entry caches these parameters from object header
+ * messages... The values are entered into the symbol table when an object
+ * header is created (by hand) and are extracted from the symbol table with a
+ * callback function registered in H5O_init_interface(). Be sure to update
+ * H5G_ent_decode(), H5G_ent_encode(), and H5G__ent_debug() as well.
+ */
+typedef union H5G_cache_t {
+ struct {
+ haddr_t btree_addr; /*file address of symbol table B-tree*/
+ haddr_t heap_addr; /*file address of stab name heap */
+ } stab;
+
+ struct {
+ size_t lval_offset; /*link value offset */
+ } slink;
+} H5G_cache_t;
+
+/*
+ * A symbol table entry. The two important fields are `name_off' and
+ * `header'. The remaining fields are used for caching information that
+ * also appears in the object header to which this symbol table entry
+ * points.
+ */
+struct H5G_entry_t {
+ H5G_cache_type_t type; /*type of information cached */
+ H5G_cache_t cache; /*cached data from object header */
+ size_t name_off; /*offset of name within name heap */
+ haddr_t header; /*file address of object header */
+};
+
+/*
+ * A symbol table node is a collection of symbol table entries. It can
+ * be thought of as the lowest level of the B-link tree that points to
+ * a collection of symbol table entries that belong to a specific symbol
+ * table or group.
+ */
+typedef struct H5G_node_t {
+ H5AC_info_t cache_info; /* Information for H5AC cache functions, _must_ be */
+ /* first field in structure */
+ size_t node_size; /* Size of node on disk */
+ unsigned nsyms; /* Number of symbols */
+ H5G_entry_t *entry; /* Array of symbol table entries */
+} H5G_node_t;
+
+/*
+ * Shared information for all open group objects
+ */
+struct H5G_shared_t {
+ int fo_count; /* open file object count */
+ hbool_t mounted; /* Group is mount point */
+};
+
+/*
+ * A group handle passed around through layers of the library within and
+ * above the H5G layer.
+ */
+struct H5G_t {
+ H5G_shared_t *shared; /* Shared file object data */
+ H5O_loc_t oloc; /* Object location for group */
+ H5G_name_t path; /* Group hierarchy path */
+};
+
+/* Link iteration operator for internal library callbacks */
+typedef herr_t (*H5G_lib_iterate_t)(const H5O_link_t *lnk, void *op_data);
+
+/* Data structure to hold table of links for a group */
+typedef struct {
+ size_t nlinks; /* # of links in table */
+ H5O_link_t *lnks; /* Pointer to array of links */
+} H5G_link_table_t;
+
+/*
+ * Common data exchange structure for symbol table nodes. This structure is
+ * passed through the B-link tree layer to the methods for the objects
+ * to which the B-link tree points.
+ *
+ * It's also used for B-tree iterators which require no additional info.
+ *
+ */
+typedef struct H5G_bt_common_t {
+ /* downward */
+ const char *name; /*points to temporary memory */
+ H5HL_t *heap; /*symbol table heap */
+} H5G_bt_common_t;
+
+/*
+ * Data exchange structure for symbol table nodes. This structure is
+ * passed through the B-link tree layer to the insert method for entries.
+ */
+typedef struct H5G_bt_ins_t {
+ /* downward */
+ H5G_bt_common_t common; /* Common info for B-tree user data (must be first) */
+ const H5O_link_t *lnk; /* Link to insert into table */
+ H5O_type_t obj_type; /* Type of object being inserted */
+ const void *crt_info; /* Creation info for object being inserted */
+} H5G_bt_ins_t;
+
+/*
+ * Data exchange structure for symbol table nodes. This structure is
+ * passed through the B-link tree layer to the remove method for entries.
+ */
+typedef struct H5G_bt_rm_t {
+ /* downward */
+ H5G_bt_common_t common; /* Common info for B-tree user data (must be first) */
+ H5RS_str_t *grp_full_path_r; /* Full path of group where link is removed */
+} H5G_bt_rm_t;
+
+/* Typedef for B-tree 'find' operation */
+typedef herr_t (*H5G_bt_find_op_t)(const H5G_entry_t *ent/*in*/, void *operator_data/*in,out*/);
+
+/*
+ * Data exchange structure for symbol table nodes. This structure is
+ * passed through the B-link tree layer to the 'find' method for entries.
+ */
+typedef struct H5G_bt_lkp_t {
+ /* downward */
+ H5G_bt_common_t common; /* Common info for B-tree user data (must be first) */
+ H5G_bt_find_op_t op; /* Operator to call when correct entry is found */
+ void *op_data; /* Data to pass to operator */
+
+ /* upward */
+} H5G_bt_lkp_t;
+
+/*
+ * Data exchange structure to pass through the B-tree layer for the
+ * H5B_iterate function.
+ */
+typedef struct H5G_bt_it_it_t {
+ /* downward */
+ H5HL_t *heap; /*symbol table heap */
+ hsize_t skip; /*initial entries to skip */
+ H5G_lib_iterate_t op; /*iteration operator */
+ void *op_data; /*user-defined operator data */
+
+ /* upward */
+ hsize_t *final_ent; /*final entry looked at */
+} H5G_bt_it_it_t;
+
+/* Data passed through B-tree iteration for copying copy symbol table content */
+typedef struct H5G_bt_it_cpy_t {
+ const H5O_loc_t *src_oloc; /* Source object location */
+ haddr_t src_heap_addr; /* Heap address of the source symbol table */
+ H5F_t *dst_file; /* File of destination group */
+ const H5O_stab_t *dst_stab; /* Symbol table message for destination group */
+ H5O_copy_t *cpy_info; /* Information for copy operation */
+} H5G_bt_it_cpy_t;
+
+/* Common information for "by index" lookups in symbol tables */
+typedef struct H5G_bt_it_idx_common_t {
+ /* downward */
+ hsize_t idx; /* Index of group member to be queried */
+ hsize_t num_objs; /* The number of objects having been traversed */
+ H5G_bt_find_op_t op; /* Operator to call when correct entry is found */
+} H5G_bt_it_idx_common_t;
+
+/* Data passed through B-tree iteration for building a table of the links */
+typedef struct H5G_bt_it_bt_t {
+ /* downward */
+ size_t alloc_nlinks; /* Number of links allocated in table */
+ H5HL_t *heap; /* Symbol table heap */
+
+ /* upward */
+ H5G_link_table_t *ltable; /* Link table to add information to */
+} H5G_bt_it_bt_t;
+
+/* Typedefs for "new format" groups */
+/* (fractal heap & v2 B-tree info) */
+
+/* Typedef for native 'name' field index records in the v2 B-tree */
+/* (Keep 'id' field first so generic record handling in callbacks works) */
+typedef struct H5G_dense_bt2_name_rec_t {
+ uint8_t id[H5G_DENSE_FHEAP_ID_LEN]; /* Heap ID for link */
+ uint32_t hash; /* Hash of 'name' field value */
+} H5G_dense_bt2_name_rec_t;
+
+/* Typedef for native 'creation order' field index records in the v2 B-tree */
+/* (Keep 'id' field first so generic record handling in callbacks works) */
+typedef struct H5G_dense_bt2_corder_rec_t {
+ uint8_t id[H5G_DENSE_FHEAP_ID_LEN]; /* Heap ID for link */
+ int64_t corder; /* 'creation order' field value */
+} H5G_dense_bt2_corder_rec_t;
+
+/*
+ * Common data exchange structure for dense link storage. This structure is
+ * passed through the v2 B-tree layer to the methods for the objects
+ * to which the v2 B-tree points.
+ */
+typedef struct H5G_bt2_ud_common_t {
+ /* downward */
+ H5F_t *f; /* Pointer to file that fractal heap is in */
+ hid_t dxpl_id; /* DXPL for operation */
+ H5HF_t *fheap; /* Fractal heap handle */
+ const char *name; /* Name of link to compare */
+ uint32_t name_hash; /* Hash of name of link to compare */
+ int64_t corder; /* Creation order value of link to compare */
+ H5B2_found_t found_op; /* Callback when correct link is found */
+ void *found_op_data; /* Callback data when correct link is found */
+} H5G_bt2_ud_common_t;
+
+/*
+ * Data exchange structure for dense link storage. This structure is
+ * passed through the v2 B-tree layer when inserting links.
+ */
+typedef struct H5G_bt2_ud_ins_t {
+ /* downward */
+ H5G_bt2_ud_common_t common; /* Common info for B-tree user data (must be first) */
+ uint8_t id[H5G_DENSE_FHEAP_ID_LEN]; /* Heap ID of link to insert */
+} H5G_bt2_ud_ins_t;
+
+/* Typedef for group creation operation */
+typedef struct H5G_obj_create_t{
+ hid_t gcpl_id; /* Group creation property list */
+ H5G_cache_type_t cache_type; /* Type of symbol table entry cache */
+ H5G_cache_t cache; /* Cached data for symbol table entry */
+} H5G_obj_create_t;
+
+/* Callback information for copying groups */
+typedef struct H5G_copy_file_ud_t {
+ H5O_copy_file_ud_common_t common; /* Shared information (must be first) */
+ H5G_cache_type_t cache_type; /* Type of symbol table entry cache */
+ H5G_cache_t cache; /* Cached data for symbol table entry */
+} H5G_copy_file_ud_t;
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/*
+ * This is the class identifier to give to the B-tree functions.
+ */
+H5_DLLVAR H5B_class_t H5B_SNODE[1];
+
+/* The cache subclass */
+H5_DLLVAR const H5AC_class_t H5AC_SNODE[1];
+
+/* The v2 B-tree class for indexing 'name' field on links */
+H5_DLLVAR const H5B2_class_t H5G_BT2_NAME[1];
+
+/* The v2 B-tree class for indexing 'creation order' field on links */
+H5_DLLVAR const H5B2_class_t H5G_BT2_CORDER[1];
+
+/* Free list for managing H5G_t structs */
+H5FL_EXTERN(H5G_t);
+
+/* Free list for managing H5G_shared_t structs */
+H5FL_EXTERN(H5G_shared_t);
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/*
+ * General group routines
+ */
+H5_DLL H5G_t *H5G__create(H5F_t *file, H5G_obj_create_t *gcrt_info,
+ hid_t dxpl_id);
+H5_DLL H5G_t *H5G__create_named(const H5G_loc_t *loc, const char *name,
+ hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id, hid_t dxpl_id);
+H5_DLL H5G_t *H5G__open_name(const H5G_loc_t *loc, const char *name,
+ hid_t gapl_id, hid_t dxpl_id);
+
+/*
+ * Group hierarchy traversal routines
+ */
+H5_DLL herr_t H5G__traverse_special(const H5G_loc_t *grp_loc,
+ const H5O_link_t *lnk, unsigned target, size_t *nlinks, hbool_t last_comp,
+ H5G_loc_t *obj_loc, hbool_t *obj_exists, hid_t lapl_id, hid_t dxpl_id);
+
+/*
+ * Utility functions
+ */
+H5_DLL herr_t H5G__init(void);
+H5_DLL herr_t H5G__term_deprec_interface(void);
+H5_DLL const char *H5G__component(const char *name, size_t *size_p);
+
+/*
+ * Functions that understand symbol tables but not names. The
+ * functions that understand names are exported to the rest of
+ * the library and appear in H5Gprivate.h.
+ */
+H5_DLL herr_t H5G__stab_create(H5O_loc_t *grp_oloc, hid_t dxpl_id,
+ const H5O_ginfo_t *ginfo, H5O_stab_t *stab);
+H5_DLL herr_t H5G__stab_create_components(H5F_t *f, H5O_stab_t *stab, size_t size_hint, hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_insert(const H5O_loc_t *grp_oloc, const char *name,
+ H5O_link_t *obj_lnk, H5O_type_t obj_type, const void *crt_info,
+ hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_insert_real(H5F_t *f, const H5O_stab_t *stab,
+ const char *name, H5O_link_t *obj_lnk, H5O_type_t obj_type,
+ const void *crt_info, hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_delete(H5F_t *f, hid_t dxpl_id, const H5O_stab_t *stab);
+H5_DLL herr_t H5G__stab_iterate(const H5O_loc_t *oloc, hid_t dxpl_id, H5_iter_order_t order,
+ hsize_t skip, hsize_t *last_lnk, H5G_lib_iterate_t op, void *op_data);
+H5_DLL herr_t H5G__stab_count(struct H5O_loc_t *oloc, hsize_t *num_objs, hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_bh_size(H5F_t *f, hid_t dxpl_id, const H5O_stab_t *stab,
+ H5_ih_info_t *bh_info);
+H5_DLL ssize_t H5G__stab_get_name_by_idx(const H5O_loc_t *oloc, H5_iter_order_t order,
+ hsize_t n, char* name, size_t size, hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_remove(const H5O_loc_t *oloc, hid_t dxpl_id,
+ H5RS_str_t *grp_full_path_r, const char *name);
+H5_DLL herr_t H5G__stab_remove_by_idx(const H5O_loc_t *oloc, hid_t dxpl_id,
+ H5RS_str_t *grp_full_path_r, H5_iter_order_t order, hsize_t n);
+H5_DLL herr_t H5G__stab_lookup(const H5O_loc_t *grp_oloc, const char *name,
+ H5O_link_t *lnk, hid_t dxpl_id);
+H5_DLL herr_t H5G__stab_lookup_by_idx(const H5O_loc_t *grp_oloc, H5_iter_order_t order,
+ hsize_t n, H5O_link_t *lnk, hid_t dxpl_id);
+#ifndef H5_STRICT_FORMAT_CHECKS
+H5_DLL herr_t H5G__stab_valid(H5O_loc_t *grp_oloc, hid_t dxpl_id,
+ H5O_stab_t *alt_stab);
+#endif /* H5_STRICT_FORMAT_CHECKS */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+H5_DLL H5G_obj_t H5G__stab_get_type_by_idx(H5O_loc_t *oloc, hsize_t idx,
+ hid_t dxpl_id);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+
+/*
+ * Functions that understand symbol table entries.
+ */
+H5_DLL void H5G__ent_copy(H5G_entry_t *dst, const H5G_entry_t *src,
+ H5_copy_depth_t depth);
+H5_DLL void H5G__ent_reset(H5G_entry_t *ent);
+H5_DLL herr_t H5G__ent_decode_vec(const H5F_t *f, const uint8_t **pp,
+ H5G_entry_t *ent, unsigned n);
+H5_DLL herr_t H5G__ent_encode_vec(const H5F_t *f, uint8_t **pp,
+ const H5G_entry_t *ent, unsigned n);
+H5_DLL herr_t H5G__ent_convert(H5F_t *f, hid_t dxpl_id, H5HL_t *heap,
+ const char *name, const H5O_link_t *lnk, H5O_type_t obj_type,
+ const void *crt_info, H5G_entry_t *ent);
+H5_DLL herr_t H5G__ent_debug(const H5G_entry_t *ent, FILE * stream, int indent,
+ int fwidth, const H5HL_t *heap);
+
+/* Functions that understand symbol table nodes */
+H5_DLL herr_t H5G__node_init(H5F_t *f);
+H5_DLL int H5G__node_iterate(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL int H5G__node_sumup(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL int H5G__node_by_idx(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL int H5G__node_copy(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL int H5G__node_build_table(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL herr_t H5G__node_iterate_size(H5F_t *f, hid_t dxpl_id, const void *_lt_key, haddr_t addr,
+ const void *_rt_key, void *_udata);
+H5_DLL herr_t H5G__node_free(H5G_node_t *sym);
+
+/* Functions that understand links in groups */
+H5_DLL herr_t H5G__ent_to_link(H5O_link_t *lnk, const H5HL_t *heap,
+ const H5G_entry_t *ent, const char *name);
+H5_DLL herr_t H5G__link_to_loc(const H5G_loc_t *grp_loc, const H5O_link_t *lnk,
+ H5G_loc_t *obj_loc);
+H5_DLL herr_t H5G__link_sort_table(H5G_link_table_t *ltable, H5_index_t idx_type,
+ H5_iter_order_t order);
+H5_DLL herr_t H5G__link_iterate_table(const H5G_link_table_t *ltable,
+ hsize_t skip, hsize_t *last_lnk, const H5G_lib_iterate_t op, void *op_data);
+H5_DLL herr_t H5G__link_release_table(H5G_link_table_t *ltable);
+H5_DLL herr_t H5G__link_name_replace(H5F_t *file, hid_t dxpl_id,
+ H5RS_str_t *grp_full_path_r, const H5O_link_t *lnk);
+
+/* Functions that understand "compact" link storage */
+H5_DLL herr_t H5G__compact_insert(const H5O_loc_t *grp_oloc, H5O_link_t *obj_lnk,
+ hid_t dxpl_id);
+H5_DLL ssize_t H5G__compact_get_name_by_idx(const H5O_loc_t *oloc, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5_index_t idx_type, H5_iter_order_t order,
+ hsize_t idx, char *name, size_t size);
+H5_DLL herr_t H5G__compact_remove(const H5O_loc_t *oloc, hid_t dxpl_id,
+ H5RS_str_t *grp_full_path_r, const char *name);
+H5_DLL herr_t H5G__compact_remove_by_idx(const H5O_loc_t *oloc, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5RS_str_t *grp_full_path_r, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t n);
+H5_DLL herr_t H5G__compact_iterate(const H5O_loc_t *oloc, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5_index_t idx_type, H5_iter_order_t order,
+ hsize_t skip, hsize_t *last_lnk, H5G_lib_iterate_t op, void *op_data);
+H5_DLL htri_t H5G__compact_lookup(const H5O_loc_t *grp_oloc, const char *name,
+ H5O_link_t *lnk, hid_t dxpl_id);
+H5_DLL herr_t H5G__compact_lookup_by_idx(const H5O_loc_t *oloc, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5_index_t idx_type, H5_iter_order_t order,
+ hsize_t n, H5O_link_t *lnk);
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+H5_DLL H5G_obj_t H5G__compact_get_type_by_idx(H5O_loc_t *oloc, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, hsize_t idx);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+/* Functions that understand "dense" link storage */
+H5_DLL herr_t H5G__dense_build_table(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
+ H5_index_t idx_type, H5_iter_order_t order, H5G_link_table_t *ltable);
+H5_DLL herr_t H5G__dense_create(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo,
+ const H5O_pline_t *pline);
+H5_DLL herr_t H5G__dense_insert(H5F_t *f, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, const H5O_link_t *lnk);
+H5_DLL htri_t H5G__dense_lookup(H5F_t *f, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, const char *name, H5O_link_t *lnk);
+H5_DLL herr_t H5G__dense_lookup_by_idx(H5F_t *f, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5_index_t idx_type, H5_iter_order_t order,
+ hsize_t n, H5O_link_t *lnk);
+H5_DLL herr_t H5G__dense_iterate(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk,
+ H5G_lib_iterate_t op, void *op_data);
+H5_DLL ssize_t H5G__dense_get_name_by_idx(H5F_t *f, hid_t dxpl_id,
+ H5O_linfo_t *linfo, H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ char *name, size_t size);
+H5_DLL herr_t H5G__dense_remove(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
+ H5RS_str_t *grp_full_path_r, const char *name);
+H5_DLL herr_t H5G__dense_remove_by_idx(H5F_t *f, hid_t dxpl_id,
+ const H5O_linfo_t *linfo, H5RS_str_t *grp_full_path_r, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t n);
+H5_DLL herr_t H5G__dense_delete(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo,
+ hbool_t adj_link);
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+H5_DLL H5G_obj_t H5G__dense_get_type_by_idx(H5F_t *f, hid_t dxpl_id,
+ H5O_linfo_t *linfo, hsize_t idx);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+/* Functions that understand group objects */
+H5_DLL herr_t H5G__obj_create(H5F_t *f, hid_t dxpl_id,
+ H5G_obj_create_t *gcrt_info, H5O_loc_t *oloc/*out*/);
+H5_DLL herr_t H5G__obj_create_real(H5F_t *f, hid_t dxpl_id,
+ const H5O_ginfo_t *ginfo, const H5O_linfo_t *linfo,
+ const H5O_pline_t *pline, H5G_obj_create_t *gcrt_info,
+ H5O_loc_t *oloc/*out*/);
+H5_DLL htri_t H5G__obj_get_linfo(const H5O_loc_t *grp_oloc, H5O_linfo_t *linfo,
+ hid_t dxpl_id);
+H5_DLL herr_t H5G__obj_iterate(const H5O_loc_t *grp_oloc,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk,
+ H5G_lib_iterate_t op, void *op_data, hid_t dxpl_id);
+H5_DLL herr_t H5G__obj_info(H5O_loc_t *oloc, H5G_info_t *grp_info, hid_t dxpl_id);
+H5_DLL htri_t H5G__obj_lookup(const H5O_loc_t *grp_oloc, const char *name,
+ H5O_link_t *lnk, hid_t dxpl_id);
+
+/*
+ * These functions operate on group hierarchy names.
+ */
+H5_DLL herr_t H5G__name_init(H5G_name_t *name, const char *path);
+
+/*
+ * These functions operate on group "locations"
+ */
+H5_DLL herr_t H5G__loc_copy(H5G_loc_t *dst, const H5G_loc_t *src, H5_copy_depth_t depth);
+H5_DLL herr_t H5G__loc_insert(H5G_loc_t *grp_loc, const char *name,
+ H5G_loc_t *obj_loc, H5O_type_t obj_type, const void *crt_info, hid_t dxpl_id);
+
+/* Testing functions */
+#ifdef H5G_TESTING
+H5_DLL htri_t H5G__is_empty_test(hid_t gid);
+H5_DLL htri_t H5G__has_links_test(hid_t gid, unsigned *nmsgs);
+H5_DLL htri_t H5G__has_stab_test(hid_t gid);
+H5_DLL htri_t H5G__is_new_dense_test(hid_t gid);
+H5_DLL herr_t H5G__new_dense_info_test(hid_t gid, hsize_t *name_count, hsize_t *corder_count);
+H5_DLL herr_t H5G__lheap_size_test(hid_t gid, size_t *lheap_size);
+H5_DLL herr_t H5G__user_path_test(hid_t obj_id, char *user_path, size_t *user_path_len, unsigned *user_path_hidden);
+H5_DLL herr_t H5G__verify_cached_stab_test(H5O_loc_t *grp_oloc, H5G_entry_t *ent);
+H5_DLL herr_t H5G__verify_cached_stabs_test(hid_t gid);
+#endif /* H5G_TESTING */
+
+#endif /* _H5Gpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Gpublic.h b/Resources/windows-libs/HDF5/include/H5Gpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..5b8b05478a5bdf36df8efbf507ec55b6b03fc589
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Gpublic.h
@@ -0,0 +1,178 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Gpublic.h
+ * Jul 11 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5G package
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Gpublic_H
+#define _H5Gpublic_H
+
+/* System headers needed by this file */
+#include <sys/types.h>
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Lpublic.h" /* Links */
+#include "H5Opublic.h" /* Object headers */
+#include "H5Tpublic.h" /* Datatypes */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Types of link storage for groups */
+typedef enum H5G_storage_type_t {
+ H5G_STORAGE_TYPE_UNKNOWN = -1, /* Unknown link storage type */
+ H5G_STORAGE_TYPE_SYMBOL_TABLE, /* Links in group are stored with a "symbol table" */
+ /* (this is sometimes called "old-style" groups) */
+ H5G_STORAGE_TYPE_COMPACT, /* Links are stored in object header */
+ H5G_STORAGE_TYPE_DENSE /* Links are stored in fractal heap & indexed with v2 B-tree */
+} H5G_storage_type_t;
+
+/* Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) */
+typedef struct H5G_info_t {
+ H5G_storage_type_t storage_type; /* Type of storage for links in group */
+ hsize_t nlinks; /* Number of links in group */
+ int64_t max_corder; /* Current max. creation order value for group */
+ hbool_t mounted; /* Whether group has a file mounted on it */
+} H5G_info_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id,
+ hid_t gcpl_id, hid_t gapl_id);
+H5_DLL hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id);
+H5_DLL hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id);
+H5_DLL hid_t H5Gget_create_plist(hid_t group_id);
+H5_DLL herr_t H5Gget_info(hid_t loc_id, H5G_info_t *ginfo);
+H5_DLL herr_t H5Gget_info_by_name(hid_t loc_id, const char *name, H5G_info_t *ginfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Gget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *ginfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Gclose(hid_t group_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* Link definitions */
+#define H5G_SAME_LOC H5L_SAME_LOC
+#define H5G_LINK_ERROR H5L_TYPE_ERROR
+#define H5G_LINK_HARD H5L_TYPE_HARD
+#define H5G_LINK_SOFT H5L_TYPE_SOFT
+#define H5G_link_t H5L_type_t
+
+/* Macros for types of objects in a group (see H5G_obj_t definition) */
+#define H5G_NTYPES 256 /* Max possible number of types */
+#define H5G_NLIBTYPES 8 /* Number of internal types */
+#define H5G_NUSERTYPES (H5G_NTYPES - H5G_NLIBTYPES)
+#define H5G_USERTYPE(X) (8 + (X)) /* User defined types */
+
+
+/* Typedefs */
+
+/*
+ * An object has a certain type. The first few numbers are reserved for use
+ * internally by HDF5. Users may add their own types with higher values. The
+ * values are never stored in the file -- they only exist while an
+ * application is running. An object may satisfy the `isa' function for more
+ * than one type.
+ */
+typedef enum H5G_obj_t {
+ H5G_UNKNOWN = -1, /* Unknown object type */
+ H5G_GROUP, /* Object is a group */
+ H5G_DATASET, /* Object is a dataset */
+ H5G_TYPE, /* Object is a named data type */
+ H5G_LINK, /* Object is a symbolic link */
+ H5G_UDLINK, /* Object is a user-defined link */
+ H5G_RESERVED_5, /* Reserved for future use */
+ H5G_RESERVED_6, /* Reserved for future use */
+ H5G_RESERVED_7 /* Reserved for future use */
+} H5G_obj_t;
+
+/* Prototype for H5Giterate() operator */
+typedef herr_t (*H5G_iterate_t)(hid_t group, const char *name, void *op_data);
+
+/* Information about an object */
+typedef struct H5G_stat_t {
+ unsigned long fileno[2]; /*file number */
+ unsigned long objno[2]; /*object number */
+ unsigned nlink; /*number of hard links to object*/
+ H5G_obj_t type; /*basic object type */
+ time_t mtime; /*modification time */
+ size_t linklen; /*symbolic link value length */
+ H5O_stat_t ohdr; /* Object header information */
+} H5G_stat_t;
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint);
+H5_DLL hid_t H5Gopen1(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Glink(hid_t cur_loc_id, H5G_link_t type, const char *cur_name,
+ const char *new_name);
+H5_DLL herr_t H5Glink2(hid_t cur_loc_id, const char *cur_name, H5G_link_t type,
+ hid_t new_loc_id, const char *new_name);
+H5_DLL herr_t H5Gmove(hid_t src_loc_id, const char *src_name,
+ const char *dst_name);
+H5_DLL herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
+ const char *dst_name);
+H5_DLL herr_t H5Gunlink(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size,
+ char *buf/*out*/);
+H5_DLL herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment);
+H5_DLL int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize,
+ char *buf);
+H5_DLL herr_t H5Giterate(hid_t loc_id, const char *name, int *idx,
+ H5G_iterate_t op, void *op_data);
+H5_DLL herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs);
+H5_DLL herr_t H5Gget_objinfo(hid_t loc_id, const char *name,
+ hbool_t follow_link, H5G_stat_t *statbuf/*out*/);
+H5_DLL ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char* name,
+ size_t size);
+H5_DLL H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Gpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Group.h b/Resources/windows-libs/HDF5/include/H5Group.h
new file mode 100644
index 0000000000000000000000000000000000000000..100b214b55c7d7a9eb3a991862c4c2c68adbe7db
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Group.h
@@ -0,0 +1,75 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Group_H
+#define __H5Group_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class Group
+ \brief Class Group represents an HDF5 group.
+
+ It inherits many operations from H5Location and CommonFG.
+*/
+class H5_DLLCPP Group : public H5Object, public CommonFG {
+ public:
+ // Close this group.
+ virtual void close();
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("Group"); }
+
+ // Throw group exception.
+ virtual void throwException(const H5std_string& func_name, const H5std_string& msg) const;
+
+ // for CommonFG to get the file id.
+ virtual hid_t getLocId() const;
+
+ // Creates a group by way of dereference.
+ Group(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ Group(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+
+ // default constructor
+ Group();
+
+ // Copy constructor: makes a copy of the original object
+ Group(const Group& original);
+
+ // Gets the group id.
+ virtual hid_t getId() const;
+
+ // Destructor
+ virtual ~Group();
+
+ // Creates a copy of an existing group using its id.
+ Group( const hid_t group_id );
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Sets the group id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ private:
+ hid_t id; // HDF5 group id
+
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Group_H
diff --git a/Resources/windows-libs/HDF5/include/H5HFpkg.h b/Resources/windows-libs/HDF5/include/H5HFpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..9c9c34c7d29c3de4a8771e385331e74ba520a796
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HFpkg.h
@@ -0,0 +1,799 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Friday, February 24, 2006
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5HF package. Source files outside the H5HF package should
+ * include H5HFprivate.h instead.
+ */
+#ifndef H5HF_PACKAGE
+#error "Do not include this file outside the H5HF package!"
+#endif
+
+#ifndef _H5HFpkg_H
+#define _H5HFpkg_H
+
+/* Get package's private header */
+#include "H5HFprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5B2private.h" /* v2 B-trees */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5FSprivate.h" /* Free space manager */
+#include "H5SLprivate.h" /* Skip lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Size of checksum information (on disk) */
+#define H5HF_SIZEOF_CHKSUM 4
+
+/* "Standard" size of prefix information for fractal heap metadata */
+#define H5HF_METADATA_PREFIX_SIZE(c) ( \
+ H5_SIZEOF_MAGIC /* Signature */ \
+ + 1 /* Version */ \
+ + ((c) ? H5HF_SIZEOF_CHKSUM : 0) /* Metadata checksum */ \
+ )
+
+/* Size of doubling-table information */
+#define H5HF_DTABLE_INFO_SIZE(h) ( \
+ 2 /* Width of table (i.e. # of columns) */ \
+ + (h)->sizeof_size /* Starting block size */ \
+ + (h)->sizeof_size /* Maximum direct block size */ \
+ + 2 /* Max. size of heap (log2 of actual value - i.e. the # of bits) */ \
+ + 2 /* Starting # of rows in root indirect block */ \
+ + (h)->sizeof_addr /* File address of table managed */ \
+ + 2 /* Current # of rows in root indirect block */ \
+ )
+
+/* Flags for status byte */
+#define H5HF_HDR_FLAGS_HUGE_ID_WRAPPED 0x01 /* "huge" object IDs have wrapped */
+#define H5HF_HDR_FLAGS_CHECKSUM_DBLOCKS 0x02 /* checksum direct blocks */
+
+/* Size of the fractal heap header on disk */
+/* (this is the fixed-len portion, the variable-len I/O filter information
+ * follows this information, if there are I/O filters for the heap)
+ */
+#define H5HF_HEADER_SIZE(h) ( \
+ /* General metadata fields */ \
+ H5HF_METADATA_PREFIX_SIZE(TRUE) \
+ \
+ /* Fractal Heap Header specific fields */ \
+ \
+ /* General heap information */ \
+ + 2 /* Heap ID len */ \
+ + 2 /* I/O filters' encoded len */ \
+ + 1 /* Status flags */ \
+ \
+ /* "Huge" object fields */ \
+ + 4 /* Max. size of "managed" object */ \
+ + (h)->sizeof_size /* Next ID for "huge" object */ \
+ + (h)->sizeof_addr /* File address of "huge" object tracker B-tree */ \
+ \
+ /* "Managed" object free space fields */ \
+ + (h)->sizeof_size /* Total man. free space */ \
+ + (h)->sizeof_addr /* File address of free section header */ \
+ \
+ /* Statistics fields */ \
+ + (h)->sizeof_size /* Size of man. space in heap */ \
+ + (h)->sizeof_size /* Size of man. space iterator offset in heap */ \
+ + (h)->sizeof_size /* Size of alloacted man. space in heap */ \
+ + (h)->sizeof_size /* Number of man. objects in heap */ \
+ + (h)->sizeof_size /* Size of huge space in heap */ \
+ + (h)->sizeof_size /* Number of huge objects in heap */ \
+ + (h)->sizeof_size /* Size of tiny space in heap */ \
+ + (h)->sizeof_size /* Number of tiny objects in heap */ \
+ \
+ /* "Managed" object doubling table info */ \
+ + H5HF_DTABLE_INFO_SIZE(h) /* Size of managed obj. doubling-table info */ \
+ )
+
+/* Size of overhead for a direct block */
+#define H5HF_MAN_ABS_DIRECT_OVERHEAD(h) ( \
+ /* General metadata fields */ \
+ H5HF_METADATA_PREFIX_SIZE(h->checksum_dblocks) \
+ \
+ /* Fractal heap managed, absolutely mapped direct block specific fields */ \
+ + (h)->sizeof_addr /* File address of heap owning the block */ \
+ + (h)->heap_off_size /* Offset of the block in the heap */ \
+ )
+
+/* Size of managed indirect block entry for a child direct block */
+#define H5HF_MAN_INDIRECT_CHILD_DIR_ENTRY_SIZE(h) ( \
+ ((h)->filter_len > 0 ? \
+ ((h)->sizeof_addr + (h)->sizeof_size + 4) : /* Size of entries for filtered direct blocks */ \
+ (h)->sizeof_addr) /* Size of entries for un-filtered direct blocks */ \
+ )
+
+/* Size of managed indirect block */
+#define H5HF_MAN_INDIRECT_SIZE(h, r) ( \
+ /* General metadata fields */ \
+ H5HF_METADATA_PREFIX_SIZE(TRUE) \
+ \
+ /* Fractal heap managed, absolutely mapped indirect block specific fields */ \
+ + (h)->sizeof_addr /* File address of heap owning the block */ \
+ + (h)->heap_off_size /* Offset of the block in the heap */ \
+ + (MIN(r, (h)->man_dtable.max_direct_rows) * (h)->man_dtable.cparam.width * H5HF_MAN_INDIRECT_CHILD_DIR_ENTRY_SIZE(h)) /* Size of entries for direct blocks */ \
+ + (((r > (h)->man_dtable.max_direct_rows) ? (r - (h)->man_dtable.max_direct_rows) : 0) * (h)->man_dtable.cparam.width * (h)->sizeof_addr) /* Size of entries for indirect blocks */ \
+ )
+
+/* Compute the # of bytes required to store an offset into a given buffer size */
+#define H5HF_SIZEOF_OFFSET_BITS(b) (((b) + 7) / 8)
+#define H5HF_SIZEOF_OFFSET_LEN(l) H5HF_SIZEOF_OFFSET_BITS(H5VM_log2_of2((unsigned)(l)))
+
+/* Heap ID bit flags */
+/* Heap ID version (2 bits: 6-7) */
+#define H5HF_ID_VERS_CURR 0x00 /* Current version of ID format */
+#define H5HF_ID_VERS_MASK 0xC0 /* Mask for getting the ID version from flags */
+/* Heap ID type (2 bits: 4-5) */
+#define H5HF_ID_TYPE_MAN 0x00 /* "Managed" object - stored in fractal heap blocks */
+#define H5HF_ID_TYPE_HUGE 0x10 /* "Huge" object - stored in file directly */
+#define H5HF_ID_TYPE_TINY 0x20 /* "Tiny" object - stored in heap ID directly */
+#define H5HF_ID_TYPE_RESERVED 0x30 /* "?" object - reserved for future use */
+#define H5HF_ID_TYPE_MASK 0x30 /* Mask for getting the ID type from flags */
+/* Heap ID bits 0-3 reserved for future use */
+
+/* Encode a "managed" heap ID */
+#define H5HF_MAN_ID_ENCODE(i, h, o, l) \
+ *(i) = H5HF_ID_VERS_CURR | H5HF_ID_TYPE_MAN; \
+ (i)++; \
+ UINT64ENCODE_VAR((i), (o), (h)->heap_off_size); \
+ UINT64ENCODE_VAR((i), (l), (h)->heap_len_size)
+
+/* Decode a "managed" heap ID */
+#define H5HF_MAN_ID_DECODE(i, h, f, o, l) \
+ f = *(uint8_t *)i++; \
+ UINT64DECODE_VAR((i), (o), (h)->heap_off_size); \
+ UINT64DECODE_VAR((i), (l), (h)->heap_len_size)
+
+/* Free space section types for fractal heap */
+/* (values stored in free space data structures in file) */
+#define H5HF_FSPACE_SECT_SINGLE 0 /* Section is a range of actual bytes in a direct block */
+#define H5HF_FSPACE_SECT_FIRST_ROW 1 /* Section is first range of blocks in an indirect block row */
+#define H5HF_FSPACE_SECT_NORMAL_ROW 2 /* Section is a range of blocks in an indirect block row */
+#define H5HF_FSPACE_SECT_INDIRECT 3 /* Section is a span of blocks in an indirect block */
+
+/* Flags for 'op' operations */
+#define H5HF_OP_MODIFY 0x0001 /* Operation will modify object */
+#define H5HF_OP_FLAGS (H5HF_OP_MODIFY) /* Bit-wise OR of all op flags */
+
+/* Flags for 'root_iblock_flags' field in header */
+#define H5HF_ROOT_IBLOCK_PINNED 0x01
+#define H5HF_ROOT_IBLOCK_PROTECTED 0x02
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Doubling-table info */
+typedef struct H5HF_dtable_t {
+ /* Immutable, pre-set information for table */
+ H5HF_dtable_cparam_t cparam; /* Creation parameters for table */
+
+ /* Derived information (stored, varies during lifetime of table) */
+ haddr_t table_addr; /* Address of first block for table */
+ /* Undefined if no space allocated for table */
+ unsigned curr_root_rows; /* Current number of rows in the root indirect block */
+ /* 0 indicates that the TABLE_ADDR field points
+ * to direct block (of START_BLOCK_SIZE) instead
+ * of indirect root block.
+ */
+
+ /* Computed information (not stored) */
+ unsigned max_root_rows; /* Maximum # of rows in root indirect block */
+ unsigned max_direct_rows; /* Maximum # of direct rows in any indirect block */
+ unsigned start_bits; /* # of bits for starting block size (i.e. log2(start_block_size)) */
+ unsigned max_direct_bits; /* # of bits for max. direct block size (i.e. log2(max_direct_size)) */
+ unsigned max_dir_blk_off_size; /* Max. size of offsets in direct blocks */
+ unsigned first_row_bits; /* # of bits in address of first row */
+ hsize_t num_id_first_row; /* Number of IDs in first row of table */
+ hsize_t *row_block_size; /* Block size per row of indirect block */
+ hsize_t *row_block_off; /* Cumulative offset per row of indirect block */
+ hsize_t *row_tot_dblock_free; /* Total free space in dblocks for this row */
+ /* (For indirect block rows, it's the total
+ * free space in all direct blocks referenced
+ * from the indirect block)
+ */
+ size_t *row_max_dblock_free; /* Max. free space in dblocks for this row */
+ /* (For indirect block rows, it's the maximum
+ * free space in a direct block referenced
+ * from the indirect block)
+ */
+} H5HF_dtable_t;
+
+/* Fractal heap free list info (forward decl - defined in H5HFflist.c) */
+typedef struct H5HF_freelist_t H5HF_freelist_t;
+
+/* Forward decl indirect block info */
+typedef struct H5HF_indirect_t H5HF_indirect_t;
+
+/* Fractal heap block location */
+typedef struct H5HF_block_loc_t {
+ /* Necessary table fields */
+ unsigned row; /* Row of block in doubling table */
+ unsigned col; /* Column of block in doubling table */
+
+ /* Derived/computed/cached table fields */
+ unsigned entry; /* Entry of block in doubling table */
+
+ /* Infrastructure */
+ H5HF_indirect_t *context; /* Pointer to the indirect block containing the block */
+ struct H5HF_block_loc_t *up; /* Pointer to next level up in the stack of levels */
+} H5HF_block_loc_t;
+
+/* Fractal heap block iterator info */
+typedef struct H5HF_block_iter_t {
+ hbool_t ready; /* Set if iterator is finished initializing */
+ H5HF_block_loc_t *curr; /* Pointer to the current level information for iterator */
+} H5HF_block_iter_t;
+
+/* Fractal heap free space section info */
+typedef struct H5HF_free_section_t {
+ H5FS_section_info_t sect_info; /* Free space section information (must be first in struct) */
+ union {
+ struct {
+ H5HF_indirect_t *parent; /* Indirect block parent for free section's direct block */
+ unsigned par_entry; /* Entry of free section's direct block in parent indirect block */
+ } single;
+ struct {
+ struct H5HF_free_section_t *under; /* Pointer to indirect block underlying row section */
+ unsigned row; /* Row for range of blocks */
+ unsigned col; /* Column for range of blocks */
+ unsigned num_entries; /* Number of entries covered */
+
+ /* Fields that aren't stored */
+ hbool_t checked_out; /* Flag to indicate that a row section is temporarily out of the free space manager */
+ } row;
+ struct {
+ /* Holds either a pointer to an indirect block (if its "live") or
+ * the block offset of it's indirect block (if its "serialized")
+ * (This allows the indirect block that the section is within to
+ * be compared with other sections, whether it's serialized
+ * or not)
+ */
+ union {
+ H5HF_indirect_t *iblock; /* Indirect block for free section */
+ hsize_t iblock_off; /* Indirect block offset in "heap space" */
+ } u;
+ unsigned row; /* Row for range of blocks */
+ unsigned col; /* Column for range of blocks */
+ unsigned num_entries; /* Number of entries covered */
+
+ /* Fields that aren't stored */
+ struct H5HF_free_section_t *parent; /* Pointer to "parent" indirect section */
+ unsigned par_entry; /* Entry within parent indirect section */
+ hsize_t span_size; /* Size of space tracked, in "heap space" */
+ unsigned iblock_entries; /* Number of entries in indirect block where section is located */
+ unsigned rc; /* Reference count of outstanding row & child indirect sections */
+ unsigned dir_nrows; /* Number of direct rows in section */
+ struct H5HF_free_section_t **dir_rows; /* Array of pointers to outstanding row sections */
+ unsigned indir_nents; /* Number of indirect entries in section */
+ struct H5HF_free_section_t **indir_ents; /* Array of pointers to outstanding child indirect sections */
+ } indirect;
+ } u;
+} H5HF_free_section_t;
+
+/* The fractal heap header information */
+/* (Each fractal heap header has certain information that is shared across all
+ * the instances of blocks in that fractal heap)
+ */
+typedef struct H5HF_hdr_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* General header information (stored in header) */
+ unsigned id_len; /* Size of heap IDs (in bytes) */
+ unsigned filter_len; /* Size of I/O filter information (in bytes) */
+
+ /* Flags for heap settings (stored in status byte in header) */
+ hbool_t debug_objs; /* Is the heap storing objects in 'debug' format */
+ hbool_t write_once; /* Is heap being written in "write once" mode? */
+ hbool_t huge_ids_wrapped; /* Have "huge" object IDs wrapped around? */
+ hbool_t checksum_dblocks; /* Should the direct blocks in the heap be checksummed? */
+
+ /* Doubling table information (partially stored in header) */
+ /* (Partially set by user, partially derived/updated internally) */
+ H5HF_dtable_t man_dtable; /* Doubling-table info for managed objects */
+
+ /* Free space information for managed objects (stored in header) */
+ hsize_t total_man_free; /* Total amount of free space in managed blocks */
+ haddr_t fs_addr; /* Address of free space header on disk */
+
+ /* "Huge" object support (stored in header) */
+ uint32_t max_man_size; /* Max. size of object to manage in doubling table */
+ hsize_t huge_next_id; /* Next ID to use for indirectly tracked 'huge' object */
+ haddr_t huge_bt2_addr; /* Address of v2 B-tree for tracking "huge" object info */
+
+ /* I/O filter support (stored in header, if any are used) */
+ H5O_pline_t pline; /* I/O filter pipeline for heap objects */
+ size_t pline_root_direct_size; /* Size of filtered root direct block */
+ unsigned pline_root_direct_filter_mask; /* I/O filter mask for filtered root direct block */
+
+ /* Statistics for heap (stored in header) */
+ hsize_t man_size; /* Total amount of 'managed' space in heap */
+ hsize_t man_alloc_size; /* Total amount of allocated 'managed' space in heap */
+ hsize_t man_iter_off; /* Offset of iterator in 'managed' heap space */
+ hsize_t man_nobjs; /* Number of 'managed' objects in heap */
+ hsize_t huge_size; /* Total size of 'huge' objects in heap */
+ hsize_t huge_nobjs; /* Number of 'huge' objects in heap */
+ hsize_t tiny_size; /* Total size of 'tiny' objects in heap */
+ hsize_t tiny_nobjs; /* Number of 'tiny' objects in heap */
+
+ /* Cached/computed values (not stored in header) */
+ size_t rc; /* Reference count of heap's components using heap header */
+ haddr_t heap_addr; /* Address of heap header in the file */
+ size_t heap_size; /* Size of heap header in the file */
+ H5AC_protect_t mode; /* Access mode for heap */
+ H5F_t *f; /* Pointer to file for heap */
+ size_t file_rc; /* Reference count of files using heap header */
+ hbool_t pending_delete; /* Heap is pending deletion */
+ uint8_t sizeof_size; /* Size of file sizes */
+ uint8_t sizeof_addr; /* Size of file addresses */
+ struct H5HF_indirect_t *root_iblock; /* Pointer to root indirect block */
+ unsigned root_iblock_flags; /* Flags to indicate whether root indirect block is pinned/protected */
+ H5FS_t *fspace; /* Free space list for objects in heap */
+ H5HF_block_iter_t next_block; /* Block iterator for searching for next block with space */
+ H5B2_t *huge_bt2; /* v2 B-tree handle for huge objects */
+ hsize_t huge_max_id; /* Max. 'huge' heap ID before rolling 'huge' heap IDs over */
+ uint8_t huge_id_size; /* Size of 'huge' heap IDs (in bytes) */
+ hbool_t huge_ids_direct; /* Flag to indicate that 'huge' object's offset & length are stored directly in heap ID */
+ size_t tiny_max_len; /* Max. size of tiny objects for this heap */
+ hbool_t tiny_len_extended; /* Flag to indicate that 'tiny' object's length is stored in extended form (i.e. w/extra byte) */
+ uint8_t heap_off_size; /* Size of heap offsets (in bytes) */
+ uint8_t heap_len_size; /* Size of heap ID lengths (in bytes) */
+ hbool_t checked_filters; /* TRUE if pipeline passes can_apply checks */
+} H5HF_hdr_t;
+
+/* Common indirect block doubling table entry */
+/* (common between entries pointing to direct & indirect child blocks) */
+typedef struct H5HF_indirect_ent_t {
+ haddr_t addr; /* Direct block's address */
+} H5HF_indirect_ent_t;
+
+/* Extern indirect block doubling table entry for compressed direct blocks */
+/* (only exists for indirect blocks in heaps that have I/O filters) */
+typedef struct H5HF_indirect_filt_ent_t {
+ size_t size; /* Size of child direct block, after passing though I/O filters */
+ unsigned filter_mask; /* Excluded filters for child direct block */
+} H5HF_indirect_filt_ent_t;
+
+/* Fractal heap indirect block */
+struct H5HF_indirect_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* Internal heap information (not stored) */
+ size_t rc; /* Reference count of objects using this block */
+ H5HF_hdr_t *hdr; /* Shared heap header info */
+ struct H5HF_indirect_t *parent; /* Shared parent indirect block info */
+ unsigned par_entry; /* Entry in parent's table */
+ haddr_t addr; /* Address of this indirect block on disk */
+ size_t size; /* Size of indirect block on disk */
+ unsigned nrows; /* Total # of rows in indirect block */
+ unsigned max_rows; /* Max. # of rows in indirect block */
+ unsigned nchildren; /* Number of child blocks */
+ unsigned max_child; /* Max. offset used in child entries */
+ struct H5HF_indirect_t **child_iblocks; /* Array of pointers to pinned child indirect blocks */
+
+ /* Stored values */
+ hsize_t block_off; /* Offset of the block within the heap's address space */
+ H5HF_indirect_ent_t *ents; /* Pointer to block entry table */
+ H5HF_indirect_filt_ent_t *filt_ents; /* Pointer to filtered information for direct blocks */
+};
+
+/* A fractal heap direct block */
+typedef struct H5HF_direct_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ /* Internal heap information */
+ H5HF_hdr_t *hdr; /* Shared heap header info */
+ H5HF_indirect_t *parent; /* Shared parent indirect block info */
+ unsigned par_entry; /* Entry in parent's table */
+ size_t size; /* Size of direct block */
+ hsize_t file_size; /* Size of direct block in file (only valid when block's space is being freed) */
+ unsigned blk_off_size; /* Size of offsets in the block */
+ uint8_t *blk; /* Pointer to buffer containing block data */
+
+ /* Stored values */
+ hsize_t block_off; /* Offset of the block within the heap's address space */
+} H5HF_direct_t;
+
+/* Fractal heap */
+struct H5HF_t {
+ H5HF_hdr_t *hdr; /* Pointer to internal fractal heap header info */
+ H5F_t *f; /* Pointer to file for heap */
+};
+
+/* Fractal heap "parent info" (for loading a block) */
+typedef struct H5HF_parent_t {
+ H5HF_hdr_t *hdr; /* Pointer to heap header info */
+ H5HF_indirect_t *iblock; /* Pointer to parent indirect block */
+ unsigned entry; /* Location of block in parent's entry table */
+} H5HF_parent_t;
+
+/* Typedef for indirectly accessed 'huge' object's records in the v2 B-tree */
+typedef struct H5HF_huge_bt2_indir_rec_t {
+ haddr_t addr; /* Address of the object in the file */
+ hsize_t len; /* Length of the object in the file */
+ hsize_t id; /* ID used for object (not used for 'huge' objects directly accessed) */
+} H5HF_huge_bt2_indir_rec_t;
+
+/* Typedef for indirectly accessed, filtered 'huge' object's records in the v2 B-tree */
+typedef struct H5HF_huge_bt2_filt_indir_rec_t {
+ haddr_t addr; /* Address of the filtered object in the file */
+ hsize_t len; /* Length of the filtered object in the file */
+ unsigned filter_mask; /* I/O pipeline filter mask for filtered object in the file */
+ hsize_t obj_size; /* Size of the de-filtered object in memory */
+ hsize_t id; /* ID used for object (not used for 'huge' objects directly accessed) */
+} H5HF_huge_bt2_filt_indir_rec_t;
+
+/* Typedef for directly accessed 'huge' object's records in the v2 B-tree */
+typedef struct H5HF_huge_bt2_dir_rec_t {
+ haddr_t addr; /* Address of the object in the file */
+ hsize_t len; /* Length of the object in the file */
+} H5HF_huge_bt2_dir_rec_t;
+
+/* Typedef for directly accessed, filtered 'huge' object's records in the v2 B-tree */
+typedef struct H5HF_huge_bt2_filt_dir_rec_t {
+ haddr_t addr; /* Address of the filtered object in the file */
+ hsize_t len; /* Length of the filtered object in the file */
+ unsigned filter_mask; /* I/O pipeline filter mask for filtered object in the file */
+ hsize_t obj_size; /* Size of the de-filtered object in memory */
+} H5HF_huge_bt2_filt_dir_rec_t;
+
+/* User data for free space section 'add' callback */
+typedef struct {
+ H5HF_hdr_t *hdr; /* Fractal heap header */
+ hid_t dxpl_id; /* DXPL ID for operation */
+} H5HF_sect_add_ud_t;
+
+/* User data for v2 B-tree 'remove' callback on 'huge' objects */
+typedef struct {
+ H5HF_hdr_t *hdr; /* Fractal heap header (in) */
+ hid_t dxpl_id; /* DXPL ID for operation (in) */
+ hsize_t obj_len; /* Length of object removed (out) */
+} H5HF_huge_remove_ud_t;
+
+/* User data for fractal heap header cache client callback */
+typedef struct H5HF_hdr_cache_ud_t {
+ H5F_t *f; /* File pointer */
+ hid_t dxpl_id; /* DXPL ID for operation (in) */
+} H5HF_hdr_cache_ud_t;
+
+/* User data for fractal heap indirect block cache client callbacks */
+typedef struct H5HF_iblock_cache_ud_t {
+ H5HF_parent_t * par_info; /* Parent info */
+ H5F_t * f; /* File pointer */
+ const unsigned *nrows; /* Number of rows */
+} H5HF_iblock_cache_ud_t;
+
+/* User data for fractal heap direct block cache client callbacks */
+typedef struct H5HF_dblock_cache_ud_t {
+ H5HF_parent_t par_info; /* Parent info */
+ H5F_t * f; /* File pointer */
+ size_t odi_size; /* On disk image size of the direct block.
+ * Note that there is no necessary relation
+ * between this value, and the actual
+ * direct block size, as conpression may
+ * reduce the size of the on disk image,
+ * and check sums may increase it.
+ */
+ size_t dblock_size; /* size of the direct block, which bears
+ * no necessary relation to the block
+ * odi_size -- the size of the on disk
+ * image of the block. Note that the
+ * metadata cache is only interested
+ * in the odi_size, and thus it is this
+ * value that is passed to the cache in
+ * calls to it.
+ */
+ unsigned filter_mask; /* Excluded filters for direct block */
+} H5HF_dblock_cache_ud_t;
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* H5HF header inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_FHEAP_HDR[1];
+
+/* H5HF indirect block inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_FHEAP_IBLOCK[1];
+
+/* H5HF direct block inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_FHEAP_DBLOCK[1];
+
+/* The v2 B-tree class for tracking indirectly accessed 'huge' objects */
+H5_DLLVAR const H5B2_class_t H5HF_HUGE_BT2_INDIR[1];
+
+/* The v2 B-tree class for tracking indirectly accessed filtered 'huge' objects */
+H5_DLLVAR const H5B2_class_t H5HF_HUGE_BT2_FILT_INDIR[1];
+
+/* The v2 B-tree class for tracking directly accessed 'huge' objects */
+H5_DLLVAR const H5B2_class_t H5HF_HUGE_BT2_DIR[1];
+
+/* The v2 B-tree class for tracking directly accessed filtered 'huge' objects */
+H5_DLLVAR const H5B2_class_t H5HF_HUGE_BT2_FILT_DIR[1];
+
+/* H5HF single section inherits serializable properties from H5FS_section_class_t */
+H5_DLLVAR H5FS_section_class_t H5HF_FSPACE_SECT_CLS_SINGLE[1];
+
+/* H5HF 'first' row section inherits serializable properties from H5FS_section_class_t */
+H5_DLLVAR H5FS_section_class_t H5HF_FSPACE_SECT_CLS_FIRST_ROW[1];
+
+/* H5HF 'normal' row section inherits serializable properties from H5FS_section_class_t */
+H5_DLLVAR H5FS_section_class_t H5HF_FSPACE_SECT_CLS_NORMAL_ROW[1];
+
+/* H5HF indirect section inherits serializable properties from H5FS_section_class_t */
+H5_DLLVAR H5FS_section_class_t H5HF_FSPACE_SECT_CLS_INDIRECT[1];
+
+/* Declare a free list to manage the H5HF_indirect_t struct */
+H5FL_EXTERN(H5HF_indirect_t);
+
+/* Declare a free list to manage the H5HF_indirect_ent_t sequence information */
+H5FL_SEQ_EXTERN(H5HF_indirect_ent_t);
+
+/* Declare a free list to manage the H5HF_indirect_filt_ent_t sequence information */
+H5FL_SEQ_EXTERN(H5HF_indirect_filt_ent_t);
+
+/* Declare a free list to manage the H5HF_indirect_t * sequence information */
+typedef H5HF_indirect_t *H5HF_indirect_ptr_t;
+H5FL_SEQ_EXTERN(H5HF_indirect_ptr_t);
+
+/* Declare a free list to manage the H5HF_direct_t struct */
+H5FL_EXTERN(H5HF_direct_t);
+
+/* Declare a free list to manage heap direct block data to/from disk */
+H5FL_BLK_EXTERN(direct_block);
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Doubling table routines */
+H5_DLL herr_t H5HF_dtable_init(H5HF_dtable_t *dtable);
+H5_DLL herr_t H5HF_dtable_dest(H5HF_dtable_t *dtable);
+H5_DLL herr_t H5HF_dtable_lookup(const H5HF_dtable_t *dtable, hsize_t off,
+ unsigned *row, unsigned *col);
+H5_DLL unsigned H5HF_dtable_size_to_row(const H5HF_dtable_t *dtable, size_t block_size);
+H5_DLL unsigned H5HF_dtable_size_to_rows(const H5HF_dtable_t *dtable, hsize_t size);
+H5_DLL hsize_t H5HF_dtable_span_size(const H5HF_dtable_t *dtable, unsigned start_row,
+ unsigned start_col, unsigned num_entries);
+
+/* Heap header routines */
+H5_DLL H5HF_hdr_t * H5HF_hdr_alloc(H5F_t *f);
+H5_DLL haddr_t H5HF_hdr_create(H5F_t *f, hid_t dxpl_id, const H5HF_create_t *cparam);
+H5_DLL H5HF_hdr_t *H5HF_hdr_protect(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ H5AC_protect_t rw);
+H5_DLL herr_t H5HF_hdr_finish_init_phase1(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_finish_init_phase2(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_finish_init(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_incr(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_decr(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_fuse_incr(H5HF_hdr_t *hdr);
+H5_DLL size_t H5HF_hdr_fuse_decr(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_dirty(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_adj_free(H5HF_hdr_t *hdr, ssize_t amt);
+H5_DLL herr_t H5HF_hdr_adjust_heap(H5HF_hdr_t *hdr, hsize_t new_size, hssize_t extra_free);
+H5_DLL herr_t H5HF_hdr_inc_alloc(H5HF_hdr_t *hdr, size_t alloc_size);
+H5_DLL herr_t H5HF_hdr_start_iter(H5HF_hdr_t *hdr, H5HF_indirect_t *iblock, hsize_t curr_off, unsigned curr_entry);
+H5_DLL herr_t H5HF_hdr_skip_blocks(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_indirect_t *iblock, unsigned start_entry, unsigned nentries);
+H5_DLL herr_t H5HF_hdr_update_iter(H5HF_hdr_t *hdr, hid_t dxpl_id, size_t min_dblock_size);
+H5_DLL herr_t H5HF_hdr_inc_iter(H5HF_hdr_t *hdr, hsize_t adv_size, unsigned nentries);
+H5_DLL herr_t H5HF_hdr_reverse_iter(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ haddr_t dblock_addr);
+H5_DLL herr_t H5HF_hdr_reset_iter(H5HF_hdr_t *hdr, hsize_t curr_off);
+H5_DLL herr_t H5HF_hdr_empty(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_free(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_hdr_delete(H5HF_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5HF_hdr_dest(H5HF_hdr_t *hdr);
+
+/* Indirect block routines */
+H5_DLL herr_t H5HF_iblock_incr(H5HF_indirect_t *iblock);
+H5_DLL herr_t H5HF_iblock_decr(H5HF_indirect_t *iblock);
+H5_DLL herr_t H5HF_iblock_dirty(H5HF_indirect_t *iblock);
+H5_DLL herr_t H5HF_man_iblock_root_create(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ size_t min_dblock_size);
+H5_DLL herr_t H5HF_man_iblock_root_double(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ size_t min_dblock_size);
+H5_DLL herr_t H5HF_man_iblock_alloc_row(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t **sec_node);
+H5_DLL herr_t H5HF_man_iblock_create(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_indirect_t *par_iblock, unsigned par_entry, unsigned nrows,
+ unsigned max_rows, haddr_t *addr_p);
+H5_DLL H5HF_indirect_t *H5HF_man_iblock_protect(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ haddr_t iblock_addr, unsigned iblock_nrows,
+ H5HF_indirect_t *par_iblock, unsigned par_entry, hbool_t must_protect,
+ H5AC_protect_t rw, hbool_t *did_protect);
+H5_DLL herr_t H5HF_man_iblock_unprotect(H5HF_indirect_t *iblock, hid_t dxpl_id,
+ unsigned cache_flags, hbool_t did_protect);
+H5_DLL herr_t H5HF_man_iblock_attach(H5HF_indirect_t *iblock, unsigned entry,
+ haddr_t dblock_addr);
+H5_DLL herr_t H5HF_man_iblock_detach(H5HF_indirect_t *iblock, hid_t dxpl_id, unsigned entry);
+H5_DLL herr_t H5HF_man_iblock_entry_addr(H5HF_indirect_t *iblock, unsigned entry,
+ haddr_t *child_addr);
+H5_DLL herr_t H5HF_man_iblock_delete(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ haddr_t iblock_addr, unsigned iblock_nrows, H5HF_indirect_t *par_iblock,
+ unsigned par_entry);
+H5_DLL herr_t H5HF_man_iblock_size(H5F_t *f, hid_t dxpl_id, H5HF_hdr_t *hdr,
+ haddr_t iblock_addr, unsigned nrows, H5HF_indirect_t *par_iblock, unsigned par_entry, hsize_t *heap_size/*out*/);
+H5_DLL herr_t H5HF_man_iblock_dest(H5HF_indirect_t *iblock);
+
+/* Direct block routines */
+H5_DLL herr_t H5HF_man_dblock_new(H5HF_hdr_t *fh, hid_t dxpl_id, size_t request,
+ H5HF_free_section_t **ret_sec_node);
+H5_DLL herr_t H5HF_man_dblock_create(hid_t dxpl_id, H5HF_hdr_t *hdr,
+ H5HF_indirect_t *par_iblock, unsigned par_entry, haddr_t *addr_p,
+ H5HF_free_section_t **ret_sec_node);
+H5_DLL herr_t H5HF_man_dblock_destroy(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_direct_t *dblock, haddr_t dblock_addr);
+H5_DLL H5HF_direct_t *H5HF_man_dblock_protect(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ haddr_t dblock_addr, size_t dblock_size,
+ H5HF_indirect_t *par_iblock, unsigned par_entry,
+ H5AC_protect_t rw);
+H5_DLL herr_t H5HF_man_dblock_locate(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ hsize_t obj_off, H5HF_indirect_t **par_iblock,
+ unsigned *par_entry, hbool_t *par_did_protect, H5AC_protect_t rw);
+H5_DLL herr_t H5HF_man_dblock_delete(H5F_t *f, hid_t dxpl_id, haddr_t dblock_addr,
+ hsize_t dblock_size);
+H5_DLL herr_t H5HF_man_dblock_dest(H5HF_direct_t *dblock);
+
+/* Managed object routines */
+H5_DLL herr_t H5HF_man_insert(H5HF_hdr_t *fh, hid_t dxpl_id, size_t obj_size,
+ const void *obj, void *id);
+H5_DLL herr_t H5HF_man_read(H5HF_hdr_t *fh, hid_t dxpl_id, const uint8_t *id,
+ void *obj);
+H5_DLL herr_t H5HF_man_write(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id,
+ const void *obj);
+H5_DLL herr_t H5HF_man_op(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id,
+ H5HF_operator_t op, void *op_data);
+H5_DLL herr_t H5HF_man_remove(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id);
+
+/* 'Huge' object routines */
+H5_DLL herr_t H5HF_huge_init(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_huge_insert(H5HF_hdr_t *hdr, hid_t dxpl_id, size_t obj_size,
+ void *obj, void *id);
+H5_DLL herr_t H5HF_huge_get_obj_len(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ const uint8_t *id, size_t *obj_len_p);
+H5_DLL herr_t H5HF_huge_read(H5HF_hdr_t *fh, hid_t dxpl_id, const uint8_t *id,
+ void *obj);
+H5_DLL herr_t H5HF_huge_write(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id,
+ const void *obj);
+H5_DLL herr_t H5HF_huge_op(H5HF_hdr_t *hdr, hid_t dxpl_id, const uint8_t *id,
+ H5HF_operator_t op, void *op_data);
+H5_DLL herr_t H5HF_huge_remove(H5HF_hdr_t *fh, hid_t dxpl_id, const uint8_t *id);
+H5_DLL herr_t H5HF_huge_term(H5HF_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5HF_huge_delete(H5HF_hdr_t *hdr, hid_t dxpl_id);
+
+/* 'Huge' object v2 B-tree function callbacks */
+H5_DLL herr_t H5HF_huge_bt2_indir_found(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_indir_remove(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_filt_indir_found(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_filt_indir_remove(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_dir_remove(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_filt_dir_found(const void *nrecord, void *op_data);
+H5_DLL herr_t H5HF_huge_bt2_filt_dir_remove(const void *nrecord, void *op_data);
+
+/* 'Tiny' object routines */
+H5_DLL herr_t H5HF_tiny_init(H5HF_hdr_t *hdr);
+H5_DLL herr_t H5HF_tiny_insert(H5HF_hdr_t *hdr, size_t obj_size, const void *obj,
+ void *id);
+H5_DLL herr_t H5HF_tiny_get_obj_len(H5HF_hdr_t *hdr, const uint8_t *id,
+ size_t *obj_len_p);
+H5_DLL herr_t H5HF_tiny_read(H5HF_hdr_t *fh, const uint8_t *id, void *obj);
+H5_DLL herr_t H5HF_tiny_op(H5HF_hdr_t *hdr, const uint8_t *id,
+ H5HF_operator_t op, void *op_data);
+H5_DLL herr_t H5HF_tiny_remove(H5HF_hdr_t *fh, const uint8_t *id);
+
+/* Debugging routines for dumping file structures */
+H5_DLL void H5HF_hdr_print(const H5HF_hdr_t *hdr, hid_t dxpl_id,
+ hbool_t dump_internal, FILE *stream, int indent, int fwidth);
+H5_DLL herr_t H5HF_hdr_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth);
+H5_DLL herr_t H5HF_dblock_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth, haddr_t hdr_addr, size_t nrec);
+H5_DLL void H5HF_iblock_print(const H5HF_indirect_t *iblock, hbool_t dump_internal,
+ FILE *stream, int indent, int fwidth);
+H5_DLL herr_t H5HF_iblock_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr,
+ FILE *stream, int indent, int fwidth, haddr_t hdr_addr, unsigned nrows);
+
+/* Block iteration routines */
+H5_DLL herr_t H5HF_man_iter_init(H5HF_block_iter_t *biter);
+H5_DLL herr_t H5HF_man_iter_start_offset(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_block_iter_t *biter, hsize_t offset);
+H5_DLL herr_t H5HF_man_iter_start_entry(H5HF_hdr_t *hdr, H5HF_block_iter_t *biter,
+ H5HF_indirect_t *iblock, unsigned start_entry);
+H5_DLL herr_t H5HF_man_iter_set_entry(const H5HF_hdr_t *hdr,
+ H5HF_block_iter_t *biter, unsigned entry);
+H5_DLL herr_t H5HF_man_iter_next(H5HF_hdr_t *hdr, H5HF_block_iter_t *biter,
+ unsigned nentries);
+H5_DLL herr_t H5HF_man_iter_up(H5HF_block_iter_t *biter);
+H5_DLL herr_t H5HF_man_iter_down(H5HF_block_iter_t *biter, H5HF_indirect_t *iblock);
+H5_DLL herr_t H5HF_man_iter_reset(H5HF_block_iter_t *biter);
+H5_DLL herr_t H5HF_man_iter_curr(H5HF_block_iter_t *biter, unsigned *row, unsigned *col,
+ unsigned *entry, H5HF_indirect_t **block);
+H5_DLL herr_t H5HF_man_iter_offset(H5HF_hdr_t *hdr, H5HF_block_iter_t *biter,
+ hsize_t *offset);
+H5_DLL hbool_t H5HF_man_iter_ready(H5HF_block_iter_t *biter);
+
+/* Free space manipulation routines */
+H5_DLL herr_t H5HF_space_start(H5HF_hdr_t *hdr, hid_t dxpl_id, hbool_t may_create);
+H5_DLL herr_t H5HF_space_add(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *node, unsigned flags);
+H5_DLL htri_t H5HF_space_find(H5HF_hdr_t *hdr, hid_t dxpl_id, hsize_t request,
+ H5HF_free_section_t **node);
+H5_DLL herr_t H5HF_space_revert_root(const H5HF_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5HF_space_create_root(const H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_indirect_t *root_iblock);
+H5_DLL herr_t H5HF_space_size(H5HF_hdr_t *hdr, hid_t dxpl_id, hsize_t *fs_size);
+H5_DLL herr_t H5HF_space_remove(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *node);
+H5_DLL herr_t H5HF_space_close(H5HF_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5HF_space_delete(H5HF_hdr_t *hdr, hid_t dxpl_id);
+H5_DLL herr_t H5HF_space_sect_change_class(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect, unsigned new_class);
+
+/* Free space section routines */
+H5_DLL H5HF_free_section_t *H5HF_sect_single_new(hsize_t sect_off,
+ size_t sect_size, H5HF_indirect_t *parent, unsigned par_entry);
+H5_DLL herr_t H5HF_sect_single_revive(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect);
+H5_DLL herr_t H5HF_sect_single_dblock_info(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect, haddr_t *dblock_addr, size_t *dblock_size);
+H5_DLL herr_t H5HF_sect_single_reduce(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect, size_t amt);
+H5_DLL herr_t H5HF_sect_row_revive(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect);
+H5_DLL herr_t H5HF_sect_row_reduce(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_free_section_t *sect, unsigned *entry_p);
+H5_DLL H5HF_indirect_t *H5HF_sect_row_get_iblock(H5HF_free_section_t *sect);
+H5_DLL herr_t H5HF_sect_indirect_add(H5HF_hdr_t *hdr, hid_t dxpl_id,
+ H5HF_indirect_t *iblock, unsigned start_entry, unsigned nentries);
+H5_DLL herr_t H5HF_sect_single_free(H5FS_section_info_t *sect);
+
+/* Internal operator callbacks */
+H5_DLL herr_t H5HF_op_read(const void *obj, size_t obj_len, void *op_data);
+H5_DLL herr_t H5HF_op_write(const void *obj, size_t obj_len, void *op_data);
+
+/* Testing routines */
+#ifdef H5HF_TESTING
+H5_DLL herr_t H5HF_get_cparam_test(const H5HF_t *fh, H5HF_create_t *cparam);
+H5_DLL int H5HF_cmp_cparam_test(const H5HF_create_t *cparam1, const H5HF_create_t *cparam2);
+H5_DLL unsigned H5HF_get_max_root_rows(const H5HF_t *fh);
+H5_DLL unsigned H5HF_get_dtable_width_test(const H5HF_t *fh);
+H5_DLL unsigned H5HF_get_dtable_max_drows_test(const H5HF_t *fh);
+H5_DLL unsigned H5HF_get_iblock_max_drows_test(const H5HF_t *fh, unsigned pos);
+H5_DLL hsize_t H5HF_get_dblock_size_test(const H5HF_t *fh, unsigned row);
+H5_DLL hsize_t H5HF_get_dblock_free_test(const H5HF_t *fh, unsigned row);
+H5_DLL herr_t H5HF_get_id_off_test(const H5HF_t *fh, const void *id, hsize_t *obj_off);
+H5_DLL herr_t H5HF_get_id_type_test(const void *id, unsigned char *obj_type);
+H5_DLL herr_t H5HF_get_tiny_info_test(const H5HF_t *fh, size_t *max_len,
+ hbool_t *len_extended);
+H5_DLL herr_t H5HF_get_huge_info_test(const H5HF_t *fh, hsize_t *next_id,
+ hbool_t *ids_direct);
+#endif /* H5HF_TESTING */
+
+#endif /* _H5HFpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5HFpublic.h b/Resources/windows-libs/HDF5/include/H5HFpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..78b367bb62034c82fcef9745c556f96ac5816fa2
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HFpublic.h
@@ -0,0 +1,54 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5HFpublic.h
+ * Feb 24 2006
+ * Quincey Koziol <koziol@ncsa.uiuc.edu>
+ *
+ * Purpose: Public declarations for the fractal heap package.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#ifndef _H5HFpublic_H
+#define _H5HFpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/**********************************/
+/* Public API Function Prototypes */
+/**********************************/
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5HFpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5HGpkg.h b/Resources/windows-libs/HDF5/include/H5HGpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..5d4234f00d5d5e99351cf4acced2537a6206533c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HGpkg.h
@@ -0,0 +1,150 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Wednesday, July 9, 2003
+ *
+ * Purpose: This file contains declarations which are visible
+ * only within the H5HG package. Source files outside the
+ * H5HG package should include H5HGprivate.h instead.
+ */
+#ifndef H5HG_PACKAGE
+#error "Do not include this file outside the H5HG package!"
+#endif
+
+#ifndef _H5HGpkg_H
+#define _H5HGpkg_H
+
+/* Get package's private header */
+#include "H5HGprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5FLprivate.h" /* Free lists */
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* The cache subclass */
+H5_DLLVAR const H5AC_class_t H5AC_GHEAP[1];
+
+/* Declare extern the free list to manage the H5HG_t struct */
+H5FL_EXTERN(H5HG_heap_t);
+
+/* Declare extern the free list to manage sequences of H5HG_obj_t's */
+H5FL_SEQ_EXTERN(H5HG_obj_t);
+
+/* Declare extern the PQ free list to manage heap chunks */
+H5FL_BLK_EXTERN(gheap_chunk);
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/*
+ * Global heap collection version.
+ */
+#define H5HG_VERSION 1
+
+/*
+ * All global heap collections are at least this big. This allows us to read
+ * most collections with a single read() since we don't have to read a few
+ * bytes of header to figure out the size. If the heap is larger than this
+ * then a second read gets the rest after we've decoded the header.
+ */
+#define H5HG_MINSIZE 4096
+
+/*
+ * Pad all global heap messages to a multiple of eight bytes so we can load
+ * the entire collection into memory and operate on it there. Eight should
+ * be sufficient for machines that have alignment constraints because our
+ * largest data type is eight bytes.
+ */
+#define H5HG_ALIGNMENT 8
+#define H5HG_ALIGN(X) (H5HG_ALIGNMENT*(((X)+H5HG_ALIGNMENT-1)/ \
+ H5HG_ALIGNMENT))
+#define H5HG_ISALIGNED(X) ((X)==H5HG_ALIGN(X))
+
+/*
+ * The size of the collection header, always a multiple of the alignment so
+ * that the stuff that follows the header is aligned.
+ */
+#define H5HG_SIZEOF_HDR(f) \
+ H5HG_ALIGN(4 + /*magic number */ \
+ 1 + /*version number */ \
+ 3 + /*reserved */ \
+ H5F_SIZEOF_SIZE(f)) /*collection size */
+
+/*
+ * The overhead associated with each object in the heap, always a multiple of
+ * the alignment so that the stuff that follows the header is aligned.
+ */
+#define H5HG_SIZEOF_OBJHDR(f) \
+ H5HG_ALIGN(2 + /*object id number */ \
+ 2 + /*reference count */ \
+ 4 + /*reserved */ \
+ H5F_SIZEOF_SIZE(f)) /*object data size */
+
+/*
+ * The initial guess for the number of messages in a collection. We assume
+ * that all objects in that collection are zero length, giving the maximum
+ * possible number of objects in the collection. The collection itself has
+ * some overhead and each message has some overhead. The `+2' accounts for
+ * rounding and for the free space object.
+ */
+#define H5HG_NOBJS(f,z) (int)((((z)-H5HG_SIZEOF_HDR(f))/ \
+ H5HG_SIZEOF_OBJHDR(f)+2))
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+typedef struct H5HG_obj_t {
+ int nrefs; /*reference count */
+ size_t size; /*total size of object */
+ uint8_t *begin; /*ptr to object into heap->chunk*/
+} H5HG_obj_t;
+
+/* Forward declarations for fields */
+struct H5F_file_t;
+
+struct H5HG_heap_t {
+ H5AC_info_t cache_info; /* Information for H5AC cache functions, _must_ be */
+ /* first field in structure */
+ haddr_t addr; /*collection address */
+ size_t size; /*total size of collection */
+ uint8_t *chunk; /*the collection, incl. header */
+ size_t nalloc; /*numb object slots allocated */
+ size_t nused; /*number of slots used */
+ /* If this value is >65535 then all indices */
+ /* have been used at some time and the */
+ /* correct new index should be searched for */
+ struct H5F_file_t *shared; /* shared file */
+ H5HG_obj_t *obj; /*array of object descriptions */
+};
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+H5_DLL herr_t H5HG_free(H5HG_heap_t *heap);
+H5_DLL H5HG_heap_t *H5HG_protect(H5F_t *f, hid_t dxpl_id, haddr_t addr, H5AC_protect_t rw);
+
+#endif /* _H5HGpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5HGpublic.h b/Resources/windows-libs/HDF5/include/H5HGpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..01cd60c6af3a254c68588c7c370663f56f11d9b2
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HGpublic.h
@@ -0,0 +1,33 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Friday, March 27, 1998
+ */
+#ifndef _H5HGpublic_H
+#define _H5HGpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5HLpkg.h b/Resources/windows-libs/HDF5/include/H5HLpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..bf9be2ce8495b9ef25f801a24ff482f983966af3
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HLpkg.h
@@ -0,0 +1,160 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Wednesday, July 9, 2003
+ *
+ * Purpose: This file contains declarations which are visible
+ * only within the H5HL package. Source files outside the
+ * H5HL package should include H5HLprivate.h instead.
+ */
+#ifndef H5HL_PACKAGE
+#error "Do not include this file outside the H5HL package!"
+#endif
+
+#ifndef _H5HLpkg_H
+#define _H5HLpkg_H
+
+/* Get package's private header */
+#include "H5HLprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5FLprivate.h" /* Free lists */
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+/* The local heap prefix cache subclass */
+H5_DLLVAR const H5AC_class_t H5AC_LHEAP_PRFX[1];
+
+/* The local heap data block cache subclass */
+H5_DLLVAR const H5AC_class_t H5AC_LHEAP_DBLK[1];
+
+/* Declare extern the free list to manage the H5HL_free_t struct */
+H5FL_EXTERN(H5HL_free_t);
+
+/* Declare extern the PQ free list to manage the heap chunk information */
+H5FL_BLK_EXTERN(lheap_chunk);
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+#define H5HL_SIZEOF_HDR(F) \
+ H5HL_ALIGN(H5_SIZEOF_MAGIC + /*heap signature */ \
+ 1 + /*version */ \
+ 3 + /*reserved */ \
+ H5F_SIZEOF_SIZE(F) + /*data size */ \
+ H5F_SIZEOF_SIZE(F) + /*free list head */ \
+ H5F_SIZEOF_ADDR(F)) /*data address */
+
+/* Value indicating end of free list on disk */
+#define H5HL_FREE_NULL 1
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+typedef struct H5HL_free_t {
+ size_t offset; /*offset of free block */
+ size_t size; /*size of free block */
+ struct H5HL_free_t *prev; /*previous entry in free list */
+ struct H5HL_free_t *next; /*next entry in free list */
+} H5HL_free_t;
+
+/* Forward declarations */
+typedef struct H5HL_dblk_t H5HL_dblk_t;
+typedef struct H5HL_prfx_t H5HL_prfx_t;
+
+struct H5HL_t {
+ /* General heap-management fields */
+ size_t rc; /* Ref. count for prefix & data block using this struct */
+ size_t prots; /* # of times the heap has been protected */
+ size_t sizeof_size; /* Size of file sizes */
+ size_t sizeof_addr; /* Size of file addresses */
+ hbool_t single_cache_obj; /* Indicate if the heap is a single object in the cache */
+ H5HL_free_t *freelist; /*the free list */
+
+ /* Prefix-specific fields */
+ H5HL_prfx_t *prfx; /* The prefix object for the heap */
+ haddr_t prfx_addr; /* address of heap prefix */
+ size_t prfx_size; /* size of heap prefix */
+ hsize_t free_block; /* Address of first free block */
+
+ /* Data block-specific fields */
+ H5HL_dblk_t *dblk; /* The data block object for the heap */
+ haddr_t dblk_addr; /* address of data block */
+ size_t dblk_size; /* size of heap data block on disk and in mem */
+ uint8_t *dblk_image; /* The data block image */
+};
+
+/* Struct for heap data block */
+struct H5HL_dblk_t {
+ H5AC_info_t cache_info; /* Information for H5AC cache functions, _must_ be */
+ /* first field in structure */
+ H5HL_t *heap; /* Pointer to heap for data block */
+};
+
+/* Struct for heap prefix */
+struct H5HL_prfx_t {
+ H5AC_info_t cache_info; /* Information for H5AC cache functions, _must_ be */
+ /* first field in structure */
+ H5HL_t *heap; /* Pointer to heap for prefix */
+};
+
+/* Callback information for loading local heap prefix from disk */
+typedef struct H5HL_cache_prfx_ud_t {
+ /* Downwards */
+ size_t sizeof_size; /* Size of file sizes */
+ size_t sizeof_addr; /* Size of file addresses */
+ haddr_t prfx_addr; /* Address of prefix */
+ size_t sizeof_prfx; /* Size of heap prefix */
+
+ /* Upwards */
+} H5HL_cache_prfx_ud_t;
+
+/* Callback information for loading local heap data block from disk */
+typedef struct H5HL_cache_dblk_ud_t {
+ /* Downwards */
+ H5HL_t *heap; /* Local heap */
+
+ /* Upwards */
+ hbool_t loaded; /* Whether data block was loaded from file */
+} H5HL_cache_dblk_ud_t;
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Heap routines */
+H5_DLL H5HL_t *H5HL_new(size_t sizeof_size, size_t sizeof_addr, size_t prfx_size);
+H5_DLL herr_t H5HL_dest(H5HL_t *heap);
+
+/* Heap prefix routines */
+H5_DLL H5HL_prfx_t *H5HL_prfx_new(H5HL_t *heap);
+H5_DLL herr_t H5HL_prfx_dest(H5HL_prfx_t *prfx);
+
+/* Heap data block routines */
+H5_DLL H5HL_dblk_t *H5HL_dblk_new(H5HL_t *heap);
+H5_DLL herr_t H5HL_dblk_dest(H5HL_dblk_t *dblk);
+
+#endif /* _H5HLpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5HLpublic.h b/Resources/windows-libs/HDF5/include/H5HLpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..db00f510c926c07244f51773b13ddeb7dccf81c1
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5HLpublic.h
@@ -0,0 +1,41 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5HLpublic.h
+ * Jul 16 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5HL (local heap) package.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5HLpublic_H
+#define _H5HLpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5IMpublic.h b/Resources/windows-libs/HDF5/include/H5IMpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..6833f02d6e437e1de15d0f1cfc846039974ba8a8
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5IMpublic.h
@@ -0,0 +1,87 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5IMpublic_H
+#define _H5IMpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+
+H5_HLDLL herr_t H5IMmake_image_8bit( hid_t loc_id,
+ const char *dset_name,
+ hsize_t width,
+ hsize_t height,
+ const unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMmake_image_24bit( hid_t loc_id,
+ const char *dset_name,
+ hsize_t width,
+ hsize_t height,
+ const char *interlace,
+ const unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMget_image_info( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *width,
+ hsize_t *height,
+ hsize_t *planes,
+ char *interlace,
+ hssize_t *npals );
+
+H5_HLDLL herr_t H5IMread_image( hid_t loc_id,
+ const char *dset_name,
+ unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMmake_palette( hid_t loc_id,
+ const char *pal_name,
+ const hsize_t *pal_dims,
+ const unsigned char *pal_data );
+
+H5_HLDLL herr_t H5IMlink_palette( hid_t loc_id,
+ const char *image_name,
+ const char *pal_name );
+
+H5_HLDLL herr_t H5IMunlink_palette( hid_t loc_id,
+ const char *image_name,
+ const char *pal_name );
+
+H5_HLDLL herr_t H5IMget_npalettes( hid_t loc_id,
+ const char *image_name,
+ hssize_t *npals );
+
+H5_HLDLL herr_t H5IMget_palette_info( hid_t loc_id,
+ const char *image_name,
+ int pal_number,
+ hsize_t *pal_dims );
+
+H5_HLDLL herr_t H5IMget_palette( hid_t loc_id,
+ const char *image_name,
+ int pal_number,
+ unsigned char *pal_data );
+
+H5_HLDLL herr_t H5IMis_image( hid_t loc_id,
+ const char *dset_name );
+
+H5_HLDLL herr_t H5IMis_palette( hid_t loc_id,
+ const char *dset_name );
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5IdComponent.h b/Resources/windows-libs/HDF5/include/H5IdComponent.h
new file mode 100644
index 0000000000000000000000000000000000000000..986e50a09b608e5f0bc26ffe3fdb2d477058bde7
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5IdComponent.h
@@ -0,0 +1,111 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __IdComponent_H
+#define __IdComponent_H
+
+// IdComponent represents an HDF5 object that has an identifier.
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+class DataSpace;
+/*! \class IdComponent
+ \brief Class IdComponent provides wrappers of the C functions that
+ operate on an HDF5 identifier.
+
+ In most cases, the C library handles these operations and an application
+ rarely needs them.
+*/
+class H5_DLLCPP IdComponent {
+ public:
+ // Increment reference counter.
+ void incRefCount(const hid_t obj_id) const;
+ void incRefCount() const;
+
+ // Decrement reference counter.
+ void decRefCount(const hid_t obj_id) const;
+ void decRefCount() const;
+
+ // Get the reference counter to this identifier.
+ int getCounter(const hid_t obj_id) const;
+ int getCounter() const;
+
+ // Returns an HDF5 object type, given the object id.
+ static H5I_type_t getHDFObjType(const hid_t obj_id);
+
+ // Returns an HDF5 object type of this object.
+ H5I_type_t getHDFObjType() const;
+
+ // Assignment operator.
+ IdComponent& operator=( const IdComponent& rhs );
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Gets the identifier of this object.
+ virtual hid_t getId () const = 0;
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ // Sets the identifier of this object to a new value.
+ void setId(const hid_t new_id);
+
+ // Creates an object to hold an HDF5 identifier.
+ IdComponent( const hid_t h5_id );
+
+ // Copy constructor: makes copy of the original IdComponent object.
+ IdComponent( const IdComponent& original );
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Pure virtual function for there are various H5*close for the
+ // subclasses.
+ virtual void close() = 0;
+
+ // Makes and returns the string "<class-name>::<func_name>";
+ // <class-name> is returned by fromClass().
+ H5std_string inMemFunc(const char* func_name) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass() const { return("IdComponent");}
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ // Destructor
+ virtual ~IdComponent();
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+
+ // Default constructor.
+ IdComponent();
+
+ // Gets the name of the file, in which an HDF5 object belongs.
+ H5std_string p_get_file_name() const;
+
+ // Verifies that the given id is valid.
+ static bool p_valid_id(const hid_t obj_id);
+
+ // Sets the identifier of this object to a new value. - this one
+ // doesn't increment reference count
+ virtual void p_setId(const hid_t new_id) = 0;
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+}; // end class IdComponent
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __IdComponent_H
diff --git a/Resources/windows-libs/HDF5/include/H5Include.h b/Resources/windows-libs/HDF5/include/H5Include.h
new file mode 100644
index 0000000000000000000000000000000000000000..87cb182aa19c81ec883f784086ffce86ad59baf5
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Include.h
@@ -0,0 +1,30 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include <hdf5.h>
+
+// Define bool type for platforms that don't support bool yet
+#ifdef BOOL_NOTDEFINED
+#ifdef false
+#undef false
+#endif
+#ifdef true
+#undef true
+#endif
+typedef int bool;
+const bool false = 0;
+const bool true = 1;
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5IntType.h b/Resources/windows-libs/HDF5/include/H5IntType.h
new file mode 100644
index 0000000000000000000000000000000000000000..95fa64246cd5e7b1950bcbd44524589c107ab6c9
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5IntType.h
@@ -0,0 +1,57 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5IntType_H
+#define __H5IntType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class IntType operates on HDF5 integer datatype.
+class H5_DLLCPP IntType : public AtomType {
+ public:
+ // Creates a integer type using a predefined type
+ IntType(const PredType& pred_type);
+
+ // Gets the integer datatype of the specified dataset
+ IntType(const DataSet& dataset);
+
+ // Retrieves the sign type for an integer type
+ H5T_sign_t getSign() const;
+
+ // Sets the sign proprety for an integer type.
+ void setSign( H5T_sign_t sign ) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("IntType"); }
+
+ // Default constructor
+ IntType();
+
+ // Creates a integer datatype using an existing id
+ IntType(const hid_t existing_id);
+
+ // Copy constructor: makes copy of IntType object
+ IntType(const IntType& original);
+
+ // Noop destructor.
+ virtual ~IntType();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5IntType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Ipkg.h b/Resources/windows-libs/HDF5/include/H5Ipkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..dc8e867585b10bef5c2da1c5d1b00a70f841e3d6
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Ipkg.h
@@ -0,0 +1,76 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Thursday, May 15, 2003
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5I package. Source files outside the H5I package should
+ * include H5Iprivate.h instead.
+ */
+#ifndef H5I_PACKAGE
+#error "Do not include this file outside the H5I package!"
+#endif
+
+#ifndef _H5Ipkg_H
+#define _H5Ipkg_H
+
+/* Get package's private header */
+#include "H5Iprivate.h"
+
+/* Other private headers needed by this file */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/*
+ * Number of bits to use for ID Type in each atom. Increase if more types
+ * are needed (though this will decrease the number of available IDs per
+ * type). This is the only number that must be changed since all other bit
+ * field sizes and masks are calculated from TYPE_BITS.
+ */
+#define TYPE_BITS 7
+#define TYPE_MASK ((1<<TYPE_BITS)-1)
+
+#define H5I_MAX_NUM_TYPES TYPE_MASK
+
+/*
+ * Number of bits to use for the Atom index in each atom (assumes 8-bit
+ * bytes). We don't use the sign bit.
+ */
+#define ID_BITS ((sizeof(hid_t)*8)-(TYPE_BITS+1))
+#define ID_MASK ((1<<ID_BITS)-1)
+
+/* Map an atom to an ID type number */
+#define H5I_TYPE(a) ((H5I_type_t)(((hid_t)(a)>>ID_BITS) & TYPE_MASK))
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Testing functions */
+#ifdef H5I_TESTING
+H5_DLL ssize_t H5I_get_name_test(hid_t id, char *name/*out*/, size_t size,
+ hbool_t *cached);
+#endif /* H5I_TESTING */
+
+#endif /*_H5Ipkg_H*/
diff --git a/Resources/windows-libs/HDF5/include/H5Ipublic.h b/Resources/windows-libs/HDF5/include/H5Ipublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..d6305564544b500bad7a510b717f16f1f322aad7
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Ipublic.h
@@ -0,0 +1,104 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains function prototypes for each exported function in
+ * the H5I module.
+ */
+#ifndef _H5Ipublic_H
+#define _H5Ipublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*
+ * Library type values. Start with `1' instead of `0' because it makes the
+ * tracing output look better when hid_t values are large numbers. Change the
+ * TYPE_BITS in H5I.c if the MAXID gets larger than 32 (an assertion will
+ * fail otherwise).
+ *
+ * When adding types here, add a section to the 'misc19' test in test/tmisc.c
+ * to verify that the H5I{inc|dec|get}_ref() routines work correctly with in.
+ *
+ */
+typedef enum H5I_type_t {
+ H5I_UNINIT = (-2), /*uninitialized type */
+ H5I_BADID = (-1), /*invalid Type */
+ H5I_FILE = 1, /*type ID for File objects */
+ H5I_GROUP, /*type ID for Group objects */
+ H5I_DATATYPE, /*type ID for Datatype objects */
+ H5I_DATASPACE, /*type ID for Dataspace objects */
+ H5I_DATASET, /*type ID for Dataset objects */
+ H5I_ATTR, /*type ID for Attribute objects */
+ H5I_REFERENCE, /*type ID for Reference objects */
+ H5I_VFL, /*type ID for virtual file layer */
+ H5I_GENPROP_CLS, /*type ID for generic property list classes */
+ H5I_GENPROP_LST, /*type ID for generic property lists */
+ H5I_ERROR_CLASS, /*type ID for error classes */
+ H5I_ERROR_MSG, /*type ID for error messages */
+ H5I_ERROR_STACK, /*type ID for error stacks */
+ H5I_NTYPES /*number of library types, MUST BE LAST! */
+} H5I_type_t;
+
+/* Type of atoms to return to users */
+typedef int hid_t;
+#define H5_SIZEOF_HID_T H5_SIZEOF_INT
+
+/* An invalid object ID. This is also negative for error return. */
+#define H5I_INVALID_HID (-1)
+
+/*
+ * Function for freeing objects. This function will be called with an object
+ * ID type number and a pointer to the object. The function should free the
+ * object and return non-negative to indicate that the object
+ * can be removed from the ID type. If the function returns negative
+ * (failure) then the object will remain in the ID type.
+ */
+typedef herr_t (*H5I_free_t)(void*);
+
+/* Type of the function to compare objects & keys */
+typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key);
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Public API functions */
+
+H5_DLL hid_t H5Iregister(H5I_type_t type, const void *object);
+H5_DLL void *H5Iobject_verify(hid_t id, H5I_type_t id_type);
+H5_DLL void *H5Iremove_verify(hid_t id, H5I_type_t id_type);
+H5_DLL H5I_type_t H5Iget_type(hid_t id);
+H5_DLL hid_t H5Iget_file_id(hid_t id);
+H5_DLL ssize_t H5Iget_name(hid_t id, char *name/*out*/, size_t size);
+H5_DLL int H5Iinc_ref(hid_t id);
+H5_DLL int H5Idec_ref(hid_t id);
+H5_DLL int H5Iget_ref(hid_t id);
+H5_DLL H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func);
+H5_DLL herr_t H5Iclear_type(H5I_type_t type, hbool_t force);
+H5_DLL herr_t H5Idestroy_type(H5I_type_t type);
+H5_DLL int H5Iinc_type_ref(H5I_type_t type);
+H5_DLL int H5Idec_type_ref(H5I_type_t type);
+H5_DLL int H5Iget_type_ref(H5I_type_t type);
+H5_DLL void *H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key);
+H5_DLL herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members);
+H5_DLL htri_t H5Itype_exists(H5I_type_t type);
+H5_DLL htri_t H5Iis_valid(hid_t id);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Ipublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5LTparse.h b/Resources/windows-libs/HDF5/include/H5LTparse.h
new file mode 100644
index 0000000000000000000000000000000000000000..2dd8057aed929c042f686e31d799e14239698dc5
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5LTparse.h
@@ -0,0 +1,65 @@
+#ifndef YYERRCODE
+#define YYERRCODE 256
+#endif
+
+#define H5T_STD_I8BE_TOKEN 257
+#define H5T_STD_I8LE_TOKEN 258
+#define H5T_STD_I16BE_TOKEN 259
+#define H5T_STD_I16LE_TOKEN 260
+#define H5T_STD_I32BE_TOKEN 261
+#define H5T_STD_I32LE_TOKEN 262
+#define H5T_STD_I64BE_TOKEN 263
+#define H5T_STD_I64LE_TOKEN 264
+#define H5T_STD_U8BE_TOKEN 265
+#define H5T_STD_U8LE_TOKEN 266
+#define H5T_STD_U16BE_TOKEN 267
+#define H5T_STD_U16LE_TOKEN 268
+#define H5T_STD_U32BE_TOKEN 269
+#define H5T_STD_U32LE_TOKEN 270
+#define H5T_STD_U64BE_TOKEN 271
+#define H5T_STD_U64LE_TOKEN 272
+#define H5T_NATIVE_CHAR_TOKEN 273
+#define H5T_NATIVE_SCHAR_TOKEN 274
+#define H5T_NATIVE_UCHAR_TOKEN 275
+#define H5T_NATIVE_SHORT_TOKEN 276
+#define H5T_NATIVE_USHORT_TOKEN 277
+#define H5T_NATIVE_INT_TOKEN 278
+#define H5T_NATIVE_UINT_TOKEN 279
+#define H5T_NATIVE_LONG_TOKEN 280
+#define H5T_NATIVE_ULONG_TOKEN 281
+#define H5T_NATIVE_LLONG_TOKEN 282
+#define H5T_NATIVE_ULLONG_TOKEN 283
+#define H5T_IEEE_F32BE_TOKEN 284
+#define H5T_IEEE_F32LE_TOKEN 285
+#define H5T_IEEE_F64BE_TOKEN 286
+#define H5T_IEEE_F64LE_TOKEN 287
+#define H5T_NATIVE_FLOAT_TOKEN 288
+#define H5T_NATIVE_DOUBLE_TOKEN 289
+#define H5T_NATIVE_LDOUBLE_TOKEN 290
+#define H5T_STRING_TOKEN 291
+#define STRSIZE_TOKEN 292
+#define STRPAD_TOKEN 293
+#define CSET_TOKEN 294
+#define CTYPE_TOKEN 295
+#define H5T_VARIABLE_TOKEN 296
+#define H5T_STR_NULLTERM_TOKEN 297
+#define H5T_STR_NULLPAD_TOKEN 298
+#define H5T_STR_SPACEPAD_TOKEN 299
+#define H5T_CSET_ASCII_TOKEN 300
+#define H5T_CSET_UTF8_TOKEN 301
+#define H5T_C_S1_TOKEN 302
+#define H5T_FORTRAN_S1_TOKEN 303
+#define H5T_OPAQUE_TOKEN 304
+#define OPQ_SIZE_TOKEN 305
+#define OPQ_TAG_TOKEN 306
+#define H5T_COMPOUND_TOKEN 307
+#define H5T_ENUM_TOKEN 308
+#define H5T_ARRAY_TOKEN 309
+#define H5T_VLEN_TOKEN 310
+#define STRING 311
+#define NUMBER 312
+typedef union {
+ int ival; /*for integer token*/
+ char *sval; /*for name string*/
+} YYSTYPE;
+extern YYSTYPE H5LTyylval;
diff --git a/Resources/windows-libs/HDF5/include/H5LTpublic.h b/Resources/windows-libs/HDF5/include/H5LTpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..929c6bdde4a4ed7ea3d3379546b2c6d1187cf548
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5LTpublic.h
@@ -0,0 +1,370 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5LTpublic_H
+#define _H5LTpublic_H
+
+/* Flag definitions for H5LTopen_file_image() */
+#define H5LT_FILE_IMAGE_OPEN_RW 0x0001 /* Open image for read-write */
+#define H5LT_FILE_IMAGE_DONT_COPY 0x0002 /* The HDF5 lib won't copy */
+/* user supplied image buffer. The same image is open with the core driver. */
+#define H5LT_FILE_IMAGE_DONT_RELEASE 0x0004 /* The HDF5 lib won't */
+/* deallocate user supplied image buffer. The user application is reponsible */
+/* for doing so. */
+#define H5LT_FILE_IMAGE_ALL 0x0007
+
+typedef enum H5LT_lang_t {
+ H5LT_LANG_ERR = -1, /*this is the first*/
+ H5LT_DDL = 0, /*for DDL*/
+ H5LT_C = 1, /*for C*/
+ H5LT_FORTRAN = 2, /*for Fortran*/
+ H5LT_NO_LANG = 3 /*this is the last*/
+} H5LT_lang_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Make dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTmake_dataset( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ hid_t type_id,
+ const void *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_char( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const char *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_short( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const short *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_int( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const int *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_long( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const long *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_float( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const float *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_double( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const double *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_string( hid_t loc_id,
+ const char *dset_name,
+ const char *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Read dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTread_dataset( hid_t loc_id,
+ const char *dset_name,
+ hid_t type_id,
+ void *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_char( hid_t loc_id,
+ const char *dset_name,
+ char *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_short( hid_t loc_id,
+ const char *dset_name,
+ short *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_int( hid_t loc_id,
+ const char *dset_name,
+ int *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_long( hid_t loc_id,
+ const char *dset_name,
+ long *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_float( hid_t loc_id,
+ const char *dset_name,
+ float *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_double( hid_t loc_id,
+ const char *dset_name,
+ double *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_string( hid_t loc_id,
+ const char *dset_name,
+ char *buf );
+
+/*-------------------------------------------------------------------------
+ *
+ * Query dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTget_dataset_ndims( hid_t loc_id,
+ const char *dset_name,
+ int *rank );
+
+H5_HLDLL herr_t H5LTget_dataset_info( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *dims,
+ H5T_class_t *type_class,
+ size_t *type_size );
+
+H5_HLDLL herr_t H5LTfind_dataset( hid_t loc_id, const char *name );
+
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Set attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTset_attribute_string( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const char *attr_data );
+
+H5_HLDLL herr_t H5LTset_attribute_char( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const char *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_uchar( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned char *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_short( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const short *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_ushort( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned short *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_int( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const int *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_uint( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned int *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_long_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const long long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_ulong( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_float( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const float *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_double( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const double *buffer,
+ size_t size );
+
+/*-------------------------------------------------------------------------
+ *
+ * Get attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTget_attribute( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ hid_t mem_type_id,
+ void *data );
+
+H5_HLDLL herr_t H5LTget_attribute_string( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_char( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_uchar( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_short( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ short *data );
+
+H5_HLDLL herr_t H5LTget_attribute_ushort( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned short *data );
+
+H5_HLDLL herr_t H5LTget_attribute_int( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ int *data );
+
+H5_HLDLL herr_t H5LTget_attribute_uint( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned int *data );
+
+H5_HLDLL herr_t H5LTget_attribute_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_long_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ long long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_ulong( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_float( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ float *data );
+
+H5_HLDLL herr_t H5LTget_attribute_double( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ double *data );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Query attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTget_attribute_ndims( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ int *rank );
+
+H5_HLDLL herr_t H5LTget_attribute_info( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ hsize_t *dims,
+ H5T_class_t *type_class,
+ size_t *type_size );
+
+
+
+
+
+/*-------------------------------------------------------------------------
+ *
+ * General functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5LTtext_to_dtype(const char *text, H5LT_lang_t lang_type);
+H5_HLDLL herr_t H5LTdtype_to_text(hid_t dtype, char *str, H5LT_lang_t lang_type, size_t *len);
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Utility functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTfind_attribute( hid_t loc_id, const char *name );
+
+H5_HLDLL htri_t H5LTpath_valid(hid_t loc_id, const char *path, hbool_t check_object_valid);
+
+/*-------------------------------------------------------------------------
+ *
+ * File image operations functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5LTopen_file_image(void *buf_ptr, size_t buf_size, unsigned flags);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5Library.h b/Resources/windows-libs/HDF5/include/H5Library.h
new file mode 100644
index 0000000000000000000000000000000000000000..e5365f921e6dc7f407aa7749788f17c0f365ee31
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Library.h
@@ -0,0 +1,76 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Library_H
+#define __H5Library_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+#define NOTATEXIT (-10) // just in case the HDF5 library use more
+ // negative constants. Note: the solution used for the atexit/global
+ // destructors is not reliable, and desperately needs improvement
+ // It is not even working, inifiteloop message still printed when
+ // calling H5close
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+/*! \class H5Library
+ \brief Class H5Library operates the HDF5 library globably.
+
+ It is not neccessary to construct an instance of H5Library to use the
+ methods.
+*/
+class H5_DLLCPP H5Library {
+ public:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ static bool need_cleanup; // indicates if H5close should be called
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ // Initializes the HDF5 library.
+ static void open();
+
+ // Flushes all data to disk, closes files, and cleans up memory.
+ static void close();
+
+ // Instructs library not to install atexit cleanup routine
+ static void dontAtExit();
+
+ // Returns the HDF library release number.
+ static void getLibVersion( unsigned& majnum, unsigned& minnum, unsigned& relnum );
+
+ // Verifies that the arguments match the version numbers compiled
+ // into the library
+ static void checkVersion( unsigned majnum, unsigned minnum, unsigned relnum );
+
+ // Walks through all the garbage collection routines for the library,
+ // which are supposed to free any unused memory they have allocated.
+ static void garbageCollect();
+
+ // Sets limits on the different kinds of free lists.
+ static void setFreeListLimits(int reg_global_lim, int reg_list_lim, int
+ arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim);
+
+ private:
+ // Default constructor - no instance ever created
+ H5Library() {};
+
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Library_H
diff --git a/Resources/windows-libs/HDF5/include/H5Location.h b/Resources/windows-libs/HDF5/include/H5Location.h
new file mode 100644
index 0000000000000000000000000000000000000000..592f68d2317d1be5d681542de062c68c691c837f
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Location.h
@@ -0,0 +1,171 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Location_H
+#define __H5Location_H
+
+#include "H5Classes.h" // constains forward class declarations
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+class H5_DLLCPP H5Location; // forward declaration for UserData4Aiterate
+
+// Define the operator function pointer for H5Aiterate().
+typedef void (*attr_operator_t)( H5Location& loc/*in*/,
+ const H5std_string attr_name/*in*/,
+ void *operator_data/*in,out*/);
+
+class UserData4Aiterate { // user data for attribute iteration
+ public:
+ attr_operator_t op;
+ void* opData;
+ H5Location* location;
+};
+
+/*! \class H5Location
+ \brief H5Location is an abstract base class, added in version 1.8.12.
+
+ It provides a collection of wrappers for the C functions that take a
+ location identifier to specify the HDF5 object. The location identifier
+ can be either file, group, dataset, or named datatype.
+*/
+// Most of these methods were in H5Object but are now moved here because
+// a location can be a file, group, dataset, or named datatype. -BMR, 2013-10-1
+class H5_DLLCPP H5Location : public IdComponent {
+ public:
+ // Creates an attribute for the specified object at this location
+ // PropList is currently not used, so always be default.
+ Attribute createAttribute( const char* name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
+ Attribute createAttribute( const H5std_string& name, const DataType& type, const DataSpace& space, const PropList& create_plist = PropList::DEFAULT ) const;
+
+ // Given its name, opens the attribute that belongs to an object at
+ // this location.
+ Attribute openAttribute( const char* name ) const;
+ Attribute openAttribute( const H5std_string& name ) const;
+
+ // Given its index, opens the attribute that belongs to an object at
+ // this location.
+ Attribute openAttribute( const unsigned int idx ) const;
+
+ // Flushes all buffers associated with this location to disk.
+ void flush( H5F_scope_t scope ) const;
+
+ // Gets the name of the file, specified by this location.
+ H5std_string getFileName() const;
+
+ // Determines the number of attributes at this location.
+ int getNumAttrs() const;
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ // Retrieves the type of object that an object reference points to.
+ H5G_obj_t getObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+ // Retrieves the type of object that an object reference points to.
+ H5O_type_t getRefObjType(void *ref, H5R_type_t ref_type = H5R_OBJECT) const;
+ // Note: getRefObjType deprecates getObjType, but getObjType's name is
+ // misleading, so getRefObjType is used in the new function instead.
+
+ // Iterate user's function over the attributes at this location.
+ int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL);
+
+ // Checks whether the named attribute exists at this location.
+ bool attrExists(const char* name) const;
+ bool attrExists(const H5std_string& name) const;
+
+ // Renames the named attribute to a new name.
+ void renameAttr(const char* oldname, const char* newname) const;
+ void renameAttr(const H5std_string& oldname, const H5std_string& newname) const;
+
+ // Removes the named attribute from this location.
+ void removeAttr(const char* name) const;
+ void removeAttr(const H5std_string& name) const;
+
+ // Sets the comment for an HDF5 object specified by its name.
+ void setComment(const char* name, const char* comment) const;
+ void setComment(const H5std_string& name, const H5std_string& comment) const;
+ void setComment(const char* comment) const;
+ void setComment(const H5std_string& comment) const;
+
+ // Retrieves comment for the HDF5 object specified by its name.
+ ssize_t getComment(const char* name, size_t buf_size, char* comment) const;
+ H5std_string getComment(const char* name, size_t buf_size=0) const;
+ H5std_string getComment(const H5std_string& name, size_t buf_size=0) const;
+
+ // Removes the comment for the HDF5 object specified by its name.
+ void removeComment(const char* name) const;
+ void removeComment(const H5std_string& name) const;
+
+ // Creates a reference to a named object or to a dataset region
+ // in this object.
+ void reference(void* ref, const char* name,
+ H5R_type_t ref_type = H5R_OBJECT) const;
+ void reference(void* ref, const H5std_string& name,
+ H5R_type_t ref_type = H5R_OBJECT) const;
+ void reference(void* ref, const char* name, const DataSpace& dataspace,
+ H5R_type_t ref_type = H5R_DATASET_REGION) const;
+ void reference(void* ref, const H5std_string& name, const DataSpace& dataspace,
+ H5R_type_t ref_type = H5R_DATASET_REGION) const;
+
+ // Open a referenced object whose location is specified by either
+ // a file, an HDF5 object, or an attribute.
+ void dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+ void dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type = H5R_OBJECT);
+
+ // Retrieves a dataspace with the region pointed to selected.
+ DataSpace getRegion(void *ref, H5R_type_t ref_type = H5R_DATASET_REGION) const;
+
+ ///\brief Returns an identifier. (pure virtual)
+ virtual hid_t getId() const = 0;
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Default constructor,
+ H5Location();
+
+ // Creates a copy of an existing object giving the location id.
+ H5Location(const hid_t loc_id);
+
+ // Copy constructor.
+ H5Location(const H5Location& original);
+
+ // Creates a reference to an HDF5 object or a dataset region.
+ void p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const;
+
+ // Dereferences a ref into an HDF5 id.
+ hid_t p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const char* from_func);
+
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ // Retrieves the type of object that an object reference points to.
+ H5G_obj_t p_get_obj_type(void *ref, H5R_type_t ref_type) const;
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+ // Retrieves the type of object that an object reference points to.
+ H5O_type_t p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const;
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+ // Noop destructor.
+ virtual ~H5Location();
+
+}; /* end class H5Location */
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Location_H
diff --git a/Resources/windows-libs/HDF5/include/H5Lpkg.h b/Resources/windows-libs/HDF5/include/H5Lpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..2e931f527864f9d693e08ec869a68739a1cea5a3
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Lpkg.h
@@ -0,0 +1,64 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: James Laird <matzke@llnl.gov>
+ * Friday, December 1, 2005
+ *
+ * Purpose: This file contains declarations which are visible
+ * only within the H5L package. Source files outside the
+ * H5L package should include H5Lprivate.h instead.
+ */
+#ifndef H5L_PACKAGE
+#error "Do not include this file outside the H5L package!"
+#endif
+
+#ifndef _H5Lpkg_H
+#define _H5Lpkg_H
+
+/* Get package's private header */
+#include "H5Lprivate.h"
+
+/* Other private headers needed by this file */
+
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+H5_DLL herr_t H5L_create_ud(const H5G_loc_t *link_loc, const char *link_name,
+ const void * ud_data, size_t ud_data_size, H5L_type_t type,
+ hid_t lcpl_id, hid_t lapl_id, hid_t dxpl_id);
+H5_DLL herr_t H5L_link_copy_file(H5F_t *dst_file, hid_t dxpl_id,
+ const H5O_link_t *_src_lnk, const H5O_loc_t *src_oloc, H5O_link_t *dst_lnk,
+ H5O_copy_t *cpy_info);
+
+#endif /* _H5Lpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Lpublic.h b/Resources/windows-libs/HDF5/include/H5Lpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..620d2e9b00cd40ee07a09c729eaf3b379ee00929
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Lpublic.h
@@ -0,0 +1,202 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Lpublic.h
+ * Dec 1 2005
+ * James Laird
+ *
+ * Purpose: Public declarations for the H5L package (links)
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Lpublic_H
+#define _H5Lpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Tpublic.h" /* Datatypes */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Maximum length of a link's name */
+/* (encoded in a 32-bit unsigned integer) */
+#define H5L_MAX_LINK_NAME_LEN ((uint32_t)(-1)) /* (4GB - 1) */
+
+/* Macro to indicate operation occurs on same location */
+#define H5L_SAME_LOC 0
+
+/* Current version of the H5L_class_t struct */
+#define H5L_LINK_CLASS_T_VERS 0
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Link class types.
+ * Values less than 64 are reserved for the HDF5 library's internal use.
+ * Values 64 to 255 are for "user-defined" link class types; these types are
+ * defined by HDF5 but their behavior can be overridden by users.
+ * Users who want to create new classes of links should contact the HDF5
+ * development team at hdfhelp@ncsa.uiuc.edu .
+ * These values can never change because they appear in HDF5 files.
+ */
+typedef enum {
+ H5L_TYPE_ERROR = (-1), /* Invalid link type id */
+ H5L_TYPE_HARD = 0, /* Hard link id */
+ H5L_TYPE_SOFT = 1, /* Soft link id */
+ H5L_TYPE_EXTERNAL = 64, /* External link id */
+ H5L_TYPE_MAX = 255 /* Maximum link type id */
+} H5L_type_t;
+#define H5L_TYPE_BUILTIN_MAX H5L_TYPE_SOFT /* Maximum value link value for "built-in" link types */
+#define H5L_TYPE_UD_MIN H5L_TYPE_EXTERNAL /* Link ids at or above this value are "user-defined" link types. */
+
+/* Information struct for link (for H5Lget_info/H5Lget_info_by_idx) */
+typedef struct {
+ H5L_type_t type; /* Type of link */
+ hbool_t corder_valid; /* Indicate if creation order is valid */
+ int64_t corder; /* Creation order */
+ H5T_cset_t cset; /* Character set of link name */
+ union {
+ haddr_t address; /* Address hard link points to */
+ size_t val_size; /* Size of a soft link or UD link value */
+ } u;
+} H5L_info_t;
+
+/* The H5L_class_t struct can be used to override the behavior of a
+ * "user-defined" link class. Users should populate the struct with callback
+ * functions defined below.
+ */
+/* Callback prototypes for user-defined links */
+/* Link creation callback */
+typedef herr_t (*H5L_create_func_t)(const char *link_name, hid_t loc_group,
+ const void *lnkdata, size_t lnkdata_size, hid_t lcpl_id);
+
+/* Callback for when the link is moved */
+typedef herr_t (*H5L_move_func_t)(const char *new_name, hid_t new_loc,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback for when the link is copied */
+typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback during link traversal */
+typedef herr_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group,
+ const void *lnkdata, size_t lnkdata_size, hid_t lapl_id);
+
+/* Callback for when the link is deleted */
+typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback for querying the link */
+/* Returns the size of the buffer needed */
+typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata,
+ size_t lnkdata_size, void *buf /*out*/, size_t buf_size);
+
+/* User-defined link types */
+typedef struct {
+ int version; /* Version number of this struct */
+ H5L_type_t id; /* Link type ID */
+ const char *comment; /* Comment for debugging */
+ H5L_create_func_t create_func; /* Callback during link creation */
+ H5L_move_func_t move_func; /* Callback after moving link */
+ H5L_copy_func_t copy_func; /* Callback after copying link */
+ H5L_traverse_func_t trav_func; /* Callback during link traversal */
+ H5L_delete_func_t del_func; /* Callback for link deletion */
+ H5L_query_func_t query_func; /* Callback for queries */
+} H5L_class_t;
+
+/* Prototype for H5Literate/H5Literate_by_name() operator */
+typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info,
+ void *op_data);
+
+/* Callback for external link traversal */
+typedef herr_t (*H5L_elink_traverse_t)(const char *parent_file_name,
+ const char *parent_group_name, const char *child_file_name,
+ const char *child_object_name, unsigned *acc_flags, hid_t fapl_id,
+ void *op_data);
+
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL herr_t H5Lmove(hid_t src_loc, const char *src_name, hid_t dst_loc,
+ const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcopy(hid_t src_loc, const char *src_name, hid_t dst_loc,
+ const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcreate_hard(hid_t cur_loc, const char *cur_name,
+ hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id,
+ const char *link_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf/*out*/,
+ size_t size, hid_t lapl_id);
+H5_DLL herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ void *buf/*out*/, size_t size, hid_t lapl_id);
+H5_DLL htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Lget_info(hid_t loc_id, const char *name,
+ H5L_info_t *linfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ H5L_info_t *linfo /*out*/, hid_t lapl_id);
+H5_DLL ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ char *name /*out*/, size_t size, hid_t lapl_id);
+H5_DLL herr_t H5Literate(hid_t grp_id, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data);
+H5_DLL herr_t H5Literate_by_name(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx,
+ H5L_iterate_t op, void *op_data, hid_t lapl_id);
+H5_DLL herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order,
+ H5L_iterate_t op, void *op_data);
+H5_DLL herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op,
+ void *op_data, hid_t lapl_id);
+
+/* UD link functions */
+H5_DLL herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name,
+ H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id,
+ hid_t lapl_id);
+H5_DLL herr_t H5Lregister(const H5L_class_t *cls);
+H5_DLL herr_t H5Lunregister(H5L_type_t id);
+H5_DLL htri_t H5Lis_registered(H5L_type_t id);
+
+/* External link functions */
+H5_DLL herr_t H5Lunpack_elink_val(const void *ext_linkval/*in*/, size_t link_size,
+ unsigned *flags, const char **filename/*out*/, const char **obj_path /*out*/);
+H5_DLL herr_t H5Lcreate_external(const char *file_name, const char *obj_name,
+ hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Lpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5MMpublic.h b/Resources/windows-libs/HDF5/include/H5MMpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..bfcb8073bbc0755b7e9dd557bd76b35bc5d0cf24
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5MMpublic.h
@@ -0,0 +1,47 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5MMproto.h
+ * Jul 10 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5MM (memory management)
+ * package.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5MMpublic_H
+#define _H5MMpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/* These typedefs are currently used for VL datatype allocation/freeing */
+typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info);
+typedef void (*H5MM_free_t)(void *mem, void *free_info);
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5MMpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5MPpkg.h b/Resources/windows-libs/HDF5/include/H5MPpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..5a0b1f86e1b716d35c011774f561864dffabbb43
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5MPpkg.h
@@ -0,0 +1,106 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Monday, May 2, 2005
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5MP package. Source files outside the H5MP package should
+ * include H5MPprivate.h instead.
+ */
+#ifndef H5MP_PACKAGE
+#error "Do not include this file outside the H5MP package!"
+#endif
+
+#ifndef _H5MPpkg_H
+#define _H5MPpkg_H
+
+/* Get package's private header */
+#include "H5MPprivate.h" /* Memory Pools */
+
+/* Other private headers needed by this file */
+#include "H5FLprivate.h" /* Free Lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+/* Alignment macros */
+/* (Ideas from Apache APR :-) */
+
+/* Default alignment necessary */
+#define H5MP_BLOCK_ALIGNMENT 8
+
+/* General alignment macro */
+/* (this only works for aligning to power of 2 boundary) */
+#define H5MP_ALIGN(x, a) \
+ (((x) + ((size_t)(a)) - 1) & ~(((size_t)(a)) - 1))
+
+/* Default alignment */
+#define H5MP_BLOCK_ALIGN(x) H5MP_ALIGN(x, H5MP_BLOCK_ALIGNMENT)
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Free block in pool */
+typedef struct H5MP_page_blk_t {
+ size_t size; /* Size of block (includes this H5MP_page_blk_t info) */
+ unsigned is_free:1; /* Flag to indicate the block is free */
+ struct H5MP_page_t *page; /* Pointer to page block is located in */
+ struct H5MP_page_blk_t *prev; /* Pointer to previous block in page */
+ struct H5MP_page_blk_t *next; /* Pointer to next block in page */
+} H5MP_page_blk_t;
+
+/* Memory pool page */
+typedef struct H5MP_page_t {
+ size_t free_size; /* Total amount of free space in page */
+ unsigned fac_alloc:1; /* Flag to indicate the page was allocated by the pool's factory */
+ H5MP_page_blk_t *free_blk; /* Pointer to first free block in page */
+ struct H5MP_page_t *next; /* Pointer to next page in pool */
+ struct H5MP_page_t *prev; /* Pointer to previous page in pool */
+} H5MP_page_t;
+
+/* Memory pool header */
+struct H5MP_pool_t {
+ H5FL_fac_head_t *page_fac; /* Free-list factory for pages */
+ size_t page_size; /* Page size for pool */
+ size_t free_size; /* Total amount of free space in pool */
+ size_t max_size; /* Maximum block that will fit in a standard page */
+ H5MP_page_t *first; /* Pointer to first page in pool */
+ unsigned flags; /* Bit flags for pool settings */
+};
+
+
+/*****************************************/
+/* Package Private Variable Declarations */
+/*****************************************/
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+#ifdef H5MP_TESTING
+H5_DLL herr_t H5MP_get_pool_free_size (const H5MP_pool_t *mp, size_t *free_size);
+H5_DLL htri_t H5MP_pool_is_free_size_correct(const H5MP_pool_t *mp);
+H5_DLL herr_t H5MP_get_pool_first_page(const H5MP_pool_t *mp, H5MP_page_t **page);
+H5_DLL herr_t H5MP_get_page_free_size(const H5MP_page_t *mp, size_t *page);
+H5_DLL herr_t H5MP_get_page_next_page(const H5MP_page_t *page, H5MP_page_t **next_page);
+#endif /* H5MP_TESTING */
+
+#endif /* _H5MPpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Object.h b/Resources/windows-libs/HDF5/include/H5Object.h
new file mode 100644
index 0000000000000000000000000000000000000000..5576d13fc2ffc08ee9efca897c295f73034ab50d
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Object.h
@@ -0,0 +1,76 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5Object_H
+#define __H5Object_H
+
+#include "H5Location.h"
+#include "H5Classes.h" // constains forward class declarations
+
+// H5Object is a baseclass. It has these subclasses:
+// Group, DataSet, and DataType.
+// DataType, in turn, has several specific datatypes as subclasses.
+// Modification:
+// Sept 18, 2012: Added class H5Location in between IdComponent and
+// H5Object. An H5File now inherits from H5Location. All HDF5
+// wrappers in H5Object are moved up to H5Location. H5Object
+// is left mostly empty for future wrappers that are only for
+// group, dataset, and named datatype. Note that the reason for
+// adding H5Location instead of simply moving H5File to be under
+// H5Object is H5File is not an HDF5 object, and renaming H5Object
+// to H5Location will risk breaking user applications.
+// -BMR
+// Apr 2, 2014: Added wrapper getObjName for H5Iget_name
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/*! \class H5Object
+ \brief Class H5Object is a bridge between H5Location and DataSet, DataType,
+ and Group.
+
+ All the wrappers in H5Object were moved to H5Location.
+*/
+class H5_DLLCPP H5Object : public H5Location {
+ public:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ // Copy constructor: makes copy of an H5Object object.
+ H5Object(const H5Object& original);
+
+ // Gets the name of this HDF5 object, i.e., Group, DataSet, or
+ // DataType.
+ ssize_t getObjName(char *obj_name, size_t buf_size = 0) const;
+ ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const;
+ H5std_string getObjName() const;
+
+ // Noop destructor.
+ virtual ~H5Object();
+
+ protected:
+ // Default constructor
+ H5Object();
+
+ // Creates a copy of an existing object giving the object id
+ H5Object( const hid_t object_id );
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+}; /* end class H5Object */
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5Object_H
diff --git a/Resources/windows-libs/HDF5/include/H5Opkg.h b/Resources/windows-libs/HDF5/include/H5Opkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..ff525376ce472f41f0171854fb0cd11862006cd2
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Opkg.h
@@ -0,0 +1,626 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5O_PACKAGE
+#error "Do not include this file outside the H5O package!"
+#endif
+
+#ifndef _H5Opkg_H
+#define _H5Opkg_H
+
+/* Get package's private header */
+#include "H5Oprivate.h" /* Object headers */
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata cache */
+#include "H5FLprivate.h" /* Free Lists */
+
+/* Object header macros */
+#define H5O_NMESGS 8 /*initial number of messages */
+#define H5O_NCHUNKS 2 /*initial number of chunks */
+#define H5O_MIN_SIZE 22 /* Min. obj header data size (must be big enough for a message prefix and a continuation message) */
+#define H5O_MSG_TYPES 24 /* # of types of messages */
+#define H5O_MAX_CRT_ORDER_IDX 65535 /* Max. creation order index value */
+
+/* Versions of object header structure */
+
+/* Initial version of the object header format */
+#define H5O_VERSION_1 1
+
+/* Revised version - leaves out reserved bytes and alignment padding, and adds
+ * magic number as prefix and checksum as suffix for all chunks.
+ */
+#define H5O_VERSION_2 2
+
+/* The latest version of the format. Look through the 'flush'
+ * and 'size' callback for places to change when updating this. */
+#define H5O_VERSION_LATEST H5O_VERSION_2
+
+/*
+ * Align messages on 8-byte boundaries because we would like to copy the
+ * object header chunks directly into memory and operate on them there, even
+ * on 64-bit architectures. This allows us to reduce the number of disk I/O
+ * requests with a minimum amount of mem-to-mem copies.
+ *
+ * Note: We no longer attempt to do this. - QAK, 10/16/06
+ */
+#define H5O_ALIGN_OLD(X) (8 * (((X) + 7) / 8))
+#define H5O_ALIGN_VERS(V, X) \
+ (((V) == H5O_VERSION_1) ? \
+ H5O_ALIGN_OLD(X) \
+ : \
+ (X) \
+ )
+#define H5O_ALIGN_OH(O, X) \
+ H5O_ALIGN_VERS((O)->version, X)
+#define H5O_ALIGN_F(F, X) \
+ H5O_ALIGN_VERS((H5F_USE_LATEST_FORMAT(F) ? H5O_VERSION_LATEST : H5O_VERSION_1), X)
+
+/* Size of checksum (on disk) */
+#define H5O_SIZEOF_CHKSUM 4
+
+/* ========= Object Creation properties ============ */
+/* Default values for some of the object creation properties */
+/* NOTE: The H5O_CRT_ATTR_MAX_COMPACT_DEF & H5O_CRT_ATTR_MIN_DENSE_DEF values
+ * are "built into" the file format, make certain existing files with
+ * default attribute phase change storage are handled correctly if they
+ * are changed.
+ */
+#define H5O_CRT_ATTR_MAX_COMPACT_DEF 8
+#define H5O_CRT_ATTR_MIN_DENSE_DEF 6
+#define H5O_CRT_OHDR_FLAGS_DEF H5O_HDR_STORE_TIMES
+
+/* Object header status flag definitions */
+#define H5O_HDR_CHUNK0_1 0x00 /* Use 1-byte value for chunk #0 size */
+#define H5O_HDR_CHUNK0_2 0x01 /* Use 2-byte value for chunk #0 size */
+#define H5O_HDR_CHUNK0_4 0x02 /* Use 4-byte value for chunk #0 size */
+#define H5O_HDR_CHUNK0_8 0x03 /* Use 8-byte value for chunk #0 size */
+
+/*
+ * Size of object header prefix.
+ */
+#define H5O_SIZEOF_HDR(O) \
+ (((O)->version == H5O_VERSION_1) \
+ ? \
+ H5O_ALIGN_OLD(1 + /*version number */ \
+ 1 + /*reserved */ \
+ 2 + /*number of messages */ \
+ 4 + /*reference count */ \
+ 4) /*chunk data size */ \
+ : \
+ (H5_SIZEOF_MAGIC + /*magic number */ \
+ 1 + /*version number */ \
+ 1 + /*flags */ \
+ (((O)->flags & H5O_HDR_STORE_TIMES) ? ( \
+ 4 + /*access time */ \
+ 4 + /*modification time */ \
+ 4 + /*change time */ \
+ 4 /*birth time */ \
+ ) : 0) + \
+ (((O)->flags & H5O_HDR_ATTR_STORE_PHASE_CHANGE) ? ( \
+ 2 + /*max compact attributes */ \
+ 2 /*min dense attributes */ \
+ ) : 0) + \
+ (1 << ((O)->flags & H5O_HDR_CHUNK0_SIZE)) + /*chunk 0 data size */ \
+ H5O_SIZEOF_CHKSUM) /*checksum size */ \
+ )
+
+/*
+ * Size of object header message prefix
+ */
+#define H5O_SIZEOF_MSGHDR_VERS(V,C) \
+ (((V) == H5O_VERSION_1) \
+ ? \
+ H5O_ALIGN_OLD(2 + /*message type */ \
+ 2 + /*sizeof message data */ \
+ 1 + /*flags */ \
+ 3) /*reserved */ \
+ : \
+ (1 + /*message type */ \
+ 2 + /*sizeof message data */ \
+ 1 + /*flags */ \
+ ((C) ? ( \
+ 2 /*creation index */ \
+ ) : 0)) \
+ )
+#define H5O_SIZEOF_MSGHDR_OH(O) \
+ H5O_SIZEOF_MSGHDR_VERS((O)->version, (O)->flags & H5O_HDR_ATTR_CRT_ORDER_TRACKED)
+#define H5O_SIZEOF_MSGHDR_F(F, C) \
+ H5O_SIZEOF_MSGHDR_VERS((H5F_USE_LATEST_FORMAT(F) || H5F_STORE_MSG_CRT_IDX(F)) ? H5O_VERSION_LATEST : H5O_VERSION_1, (C))
+
+/*
+ * Size of chunk "header" for each chunk
+ */
+#define H5O_SIZEOF_CHKHDR_VERS(V) \
+ (((V) == H5O_VERSION_1) \
+ ? \
+ 0 + /*no magic # */ \
+ 0 /*no checksum */ \
+ : \
+ H5_SIZEOF_MAGIC + /*magic # */ \
+ H5O_SIZEOF_CHKSUM /*checksum */ \
+ )
+#define H5O_SIZEOF_CHKHDR_OH(O) \
+ H5O_SIZEOF_CHKHDR_VERS((O)->version)
+
+/*
+ * Size of checksum for each chunk
+ */
+#define H5O_SIZEOF_CHKSUM_VERS(V) \
+ (((V) == H5O_VERSION_1) \
+ ? \
+ 0 /*no checksum */ \
+ : \
+ H5O_SIZEOF_CHKSUM /*checksum */ \
+ )
+#define H5O_SIZEOF_CHKSUM_OH(O) \
+ H5O_SIZEOF_CHKSUM_VERS((O)->version)
+
+/* Input/output flags for decode functions */
+#define H5O_DECODEIO_NOCHANGE 0x01u /* IN: do not modify values */
+#define H5O_DECODEIO_DIRTY 0x02u /* OUT: message has been changed */
+
+/* Macro to incremend ndecode_dirtied (only if we are debugging) */
+#ifndef NDEBUG
+#define INCR_NDECODE_DIRTIED(OH) (OH)->ndecode_dirtied++;
+#else /* NDEBUG */
+#define INCR_NDECODE_DIRTIED(OH) ;
+#endif /* NDEBUG */
+
+/* Load native information for a message, if it's not already present */
+/* (Only works for messages with decode callback) */
+#define H5O_LOAD_NATIVE(F, DXPL, IOF, OH, MSG, ERR) \
+ if(NULL == (MSG)->native) { \
+ const H5O_msg_class_t *msg_type = (MSG)->type; \
+ unsigned ioflags = (IOF); \
+ \
+ /* Decode the message */ \
+ HDassert(msg_type->decode); \
+ if(NULL == ((MSG)->native = (msg_type->decode)((F), (DXPL), (OH), (MSG)->flags, &ioflags, (MSG)->raw))) \
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, ERR, "unable to decode message") \
+ \
+ /* Mark the message dirty if it was changed by decoding */ \
+ if((ioflags & H5O_DECODEIO_DIRTY) && (H5F_get_intent((F)) & H5F_ACC_RDWR)) { \
+ (MSG)->dirty = TRUE; \
+ /* Increment the count of messages dirtied by decoding, but */ \
+ /* only ifndef NDEBUG */ \
+ INCR_NDECODE_DIRTIED(OH) \
+ } \
+ \
+ /* Set the message's "shared info", if it's shareable */ \
+ if((MSG)->flags & H5O_MSG_FLAG_SHAREABLE) { \
+ H5O_UPDATE_SHARED((H5O_shared_t *)(MSG)->native, H5O_SHARE_TYPE_HERE, (F), msg_type->id, (MSG)->crt_idx, (OH)->chunk[0].addr) \
+ } /* end if */ \
+ \
+ /* Set the message's "creation index", if it has one */ \
+ if(msg_type->set_crt_index) { \
+ /* Set the creation index for the message */ \
+ if((msg_type->set_crt_index)((MSG)->native, (MSG)->crt_idx) < 0) \
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, ERR, "unable to set creation index") \
+ } /* end if */ \
+ } /* end if */
+
+/* Flags for a message class's "sharability" */
+#define H5O_SHARE_IS_SHARABLE 0x01
+#define H5O_SHARE_IN_OHDR 0x02
+
+
+/* The "message class" type */
+struct H5O_msg_class_t {
+ unsigned id; /*message type ID on disk */
+ const char *name; /*for debugging */
+ size_t native_size; /*size of native message */
+ unsigned share_flags; /* Message sharing settings */
+ void *(*decode)(H5F_t *, hid_t, H5O_t *, unsigned, unsigned *, const uint8_t *);
+ herr_t (*encode)(H5F_t *, hbool_t, uint8_t *, const void *);
+ void *(*copy)(const void *, void *); /*copy native value */
+ size_t (*raw_size)(const H5F_t *, hbool_t, const void *);/*sizeof encoded message */
+ herr_t (*reset)(void *); /*free nested data structs */
+ herr_t (*free)(void *); /*free main data struct */
+ herr_t (*del)(H5F_t *, hid_t, H5O_t *, void *); /* Delete space in file referenced by this message */
+ herr_t (*link)(H5F_t *, hid_t, H5O_t *, void *); /* Increment any links in file reference by this message */
+ herr_t (*set_share)(void*, const H5O_shared_t*); /* Set shared information */
+ htri_t (*can_share)(const void *); /* Is message allowed to be shared? */
+ herr_t (*pre_copy_file)(H5F_t *, const void *, hbool_t *, const H5O_copy_t *, void *); /*"pre copy" action when copying native value to file */
+ void *(*copy_file)(H5F_t *, void *, H5F_t *, hbool_t *, unsigned *, H5O_copy_t *, void *, hid_t); /*copy native value to file */
+ herr_t (*post_copy_file)(const H5O_loc_t *, const void *, H5O_loc_t *, void *, unsigned *, hid_t, H5O_copy_t *); /*"post copy" action when copying native value to file */
+ herr_t (*get_crt_index)(const void *, H5O_msg_crt_idx_t *); /* Get message's creation index */
+ herr_t (*set_crt_index)(void *, H5O_msg_crt_idx_t); /* Set message's creation index */
+ herr_t (*debug)(H5F_t*, hid_t, const void*, FILE*, int, int);
+};
+
+struct H5O_mesg_t {
+ const H5O_msg_class_t *type; /*type of message */
+ hbool_t dirty; /*raw out of date wrt native */
+ hbool_t locked; /*message is locked into chunk */
+ uint8_t flags; /*message flags */
+ H5O_msg_crt_idx_t crt_idx; /*message creation index */
+ unsigned chunkno; /*chunk number for this mesg */
+ void *native; /*native format message */
+ uint8_t *raw; /*ptr to raw data */
+ size_t raw_size; /*size with alignment */
+};
+
+typedef struct H5O_chunk_t {
+ haddr_t addr; /*chunk file address */
+ size_t size; /*chunk size */
+ size_t gap; /*space at end of chunk too small for null message */
+ uint8_t *image; /*image of file */
+} H5O_chunk_t;
+
+struct H5O_t {
+ H5AC_info_t cache_info; /* Information for metadata cache functions, _must_ be */
+ /* first field in structure */
+
+ /* File-specific information (not stored) */
+ size_t sizeof_size; /* Size of file sizes */
+ size_t sizeof_addr; /* Size of file addresses */
+
+ /* Debugging information (not stored) */
+#ifdef H5O_ENABLE_BAD_MESG_COUNT
+ hbool_t store_bad_mesg_count; /* Flag to indicate that a bad message count should be stored */
+ /* (This is to simulate a bug in earlier
+ * versions of the library)
+ */
+#endif /* H5O_ENABLE_BAD_MESG_COUNT */
+#ifndef NDEBUG
+ size_t ndecode_dirtied; /* Number of messages dirtied by decoding */
+#endif /* NDEBUG */
+
+ /* Chunk management information (not stored) */
+ size_t rc; /* Reference count of [continuation] chunks using this structure */
+ size_t chunk0_size; /* Size of serialized first chunk */
+ hbool_t mesgs_modified; /* Whether any messages were modified when the object header was deserialized */
+ hbool_t prefix_modified; /* Whether prefix was modified when the object header was deserialized */
+
+ /* Object information (stored) */
+ hbool_t has_refcount_msg; /* Whether the object has a ref. count message */
+ unsigned nlink; /*link count */
+ uint8_t version; /*version number */
+ uint8_t flags; /*flags */
+
+ /* Time information (stored, for versions > 1 & H5O_HDR_STORE_TIMES flag set) */
+ time_t atime; /*access time */
+ time_t mtime; /*modification time */
+ time_t ctime; /*change time */
+ time_t btime; /*birth time */
+
+ /* Attribute information (stored, for versions > 1) */
+ unsigned max_compact; /* Maximum # of compact attributes */
+ unsigned min_dense; /* Minimum # of "dense" attributes */
+
+ /* Message management (stored, encoded in chunks) */
+ size_t nmesgs; /*number of messages */
+ size_t alloc_nmesgs; /*number of message slots */
+ H5O_mesg_t *mesg; /*array of messages */
+ size_t link_msgs_seen; /* # of link messages seen when loading header */
+ size_t attr_msgs_seen; /* # of attribute messages seen when loading header */
+
+ /* Chunk management (not stored) */
+ size_t nchunks; /*number of chunks */
+ size_t alloc_nchunks; /*chunks allocated */
+ H5O_chunk_t *chunk; /*array of chunks */
+};
+
+/* Class for types of objects in file */
+typedef struct H5O_obj_class_t {
+ H5O_type_t type; /*object type on disk */
+ const char *name; /*for debugging */
+ void *(*get_copy_file_udata)(void); /*retrieve user data for 'copy file' operation */
+ void (*free_copy_file_udata)(void *); /*free user data for 'copy file' operation */
+ htri_t (*isa)(H5O_t *); /*if a header matches an object class */
+ hid_t (*open)(const H5G_loc_t *, hid_t, hid_t, hbool_t ); /*open an object of this class */
+ void *(*create)(H5F_t *, void *, H5G_loc_t *, hid_t ); /*create an object of this class */
+ H5O_loc_t *(*get_oloc)(hid_t ); /*get the object header location for an object */
+ herr_t (*bh_info)(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5_ih_info_t *bh_info); /*get the index & heap info for an object */
+ herr_t (*flush)(H5G_loc_t *loc, hid_t dxpl_id); /*flush an opened object of this class */
+} H5O_obj_class_t;
+
+/* Node in skip list to map addresses from one file to another during object header copy */
+typedef struct H5O_addr_map_t {
+ H5_obj_t src_obj_pos; /* Location of source object */
+ haddr_t dst_addr; /* Address of object in destination file */
+ hbool_t is_locked; /* Indicate that the destination object is locked currently */
+ hsize_t inc_ref_count; /* Number of deferred increments to reference count */
+ const H5O_obj_class_t *obj_class; /* Object class */
+ void *udata; /* Object class copy file udata */
+} H5O_addr_map_t;
+
+/* Stack of continuation messages to interpret */
+typedef struct H5O_cont_msgs_t {
+ size_t nmsgs; /* Number of continuation messages found so far */
+ size_t alloc_nmsgs; /* Continuation messages allocated */
+ H5O_cont_t *msgs; /* Array of continuation messages */
+} H5O_cont_msgs_t;
+
+/* Common callback information for loading object header prefix from disk */
+typedef struct H5O_common_cache_ud_t {
+ H5F_t *f; /* Pointer to file for object header/chunk */
+ hid_t dxpl_id; /* DXPL for operation */
+ unsigned file_intent; /* Read/write intent for file */
+ unsigned merged_null_msgs; /* Number of null messages merged together */
+ hbool_t mesgs_modified; /* Whether any messages were modified when the object header was deserialized */
+ H5O_cont_msgs_t *cont_msg_info; /* Pointer to continuation messages to work on */
+ haddr_t addr; /* Address of the prefix or chunk */
+} H5O_common_cache_ud_t;
+
+/* Callback information for loading object header prefix from disk */
+typedef struct H5O_cache_ud_t {
+ hbool_t made_attempt; /* Whether the deserialize routine was already attempted */
+ unsigned v1_pfx_nmesgs; /* Number of messages from v1 prefix header */
+ H5O_common_cache_ud_t common; /* Common object header cache callback info */
+} H5O_cache_ud_t;
+
+/* Structure representing each chunk in the cache */
+typedef struct H5O_chunk_proxy_t {
+ H5AC_info_t cache_info; /* Information for metadata cache functions, _must_ be */
+ /* first field in structure */
+
+ H5O_t *oh; /* Object header for this chunk */
+ unsigned chunkno; /* Chunk number for this chunk */
+} H5O_chunk_proxy_t;
+
+/* Callback information for loading object header chunk from disk */
+typedef struct H5O_chk_cache_ud_t {
+ hbool_t decoding; /* Whether the object header is being decoded */
+ H5O_t *oh; /* Object header for this chunk */
+ unsigned chunkno; /* Index of chunk being brought in (for re-loads) */
+ size_t size; /* Size of chunk in the file */
+ H5O_common_cache_ud_t common; /* Common object header cache callback info */
+} H5O_chk_cache_ud_t;
+
+
+/* H5O object header inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_OHDR[1];
+
+/* H5O object header chunk inherits cache-like properties from H5AC */
+H5_DLLVAR const H5AC_class_t H5AC_OHDR_CHK[1];
+
+/* Header message ID to class mapping */
+H5_DLLVAR const H5O_msg_class_t *const H5O_msg_class_g[H5O_MSG_TYPES];
+
+/* Declare external the free list for H5O_t's */
+H5FL_EXTERN(H5O_t);
+
+/* Declare external the free list for H5O_mesg_t sequences */
+H5FL_SEQ_EXTERN(H5O_mesg_t);
+
+/* Declare external the free list for H5O_chunk_t sequences */
+H5FL_SEQ_EXTERN(H5O_chunk_t);
+
+/* Declare external the free list for chunk_image blocks */
+H5FL_BLK_EXTERN(chunk_image);
+
+/*
+ * Object header messages
+ */
+
+/* Null Message. (0x0000) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_NULL[1];
+
+/* Simple Dataspace Message. (0x0001) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_SDSPACE[1];
+
+/* Link Information Message. (0x0002) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_LINFO[1];
+
+/* Datatype Message. (0x0003) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_DTYPE[1];
+
+/* Old Fill Value Message. (0x0004) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_FILL[1];
+
+/* New Fill Value Message. (0x0005) */
+/*
+ * The new fill value message is fill value plus
+ * space allocation time and fill value writing time and whether fill
+ * value is defined.
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_FILL_NEW[1];
+
+/* Link Message. (0x0006) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_LINK[1];
+
+/* External File List Message. (0x0007) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_EFL[1];
+
+/* Data Layout Message. (0x0008) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_LAYOUT[1];
+
+#ifdef H5O_ENABLE_BOGUS
+/* "Bogus" Message. (0x0009) */
+/*
+ * Used for debugging - should never be found in valid HDF5 file.
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_BOGUS[1];
+#endif /* H5O_ENABLE_BOGUS */
+
+/* Group Information Message. (0x000a) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_GINFO[1];
+
+/* Filter pipeline message. (0x000b) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_PLINE[1];
+
+/* Attribute Message. (0x000c) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_ATTR[1];
+
+/* Object name message. (0x000d) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_NAME[1];
+
+/* Modification Time Message. (0x000e) */
+/*
+ * The message is just a `time_t'.
+ * (See also the "new" modification time message)
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_MTIME[1];
+
+/* Shared Message information message (0x000f)
+ * A message for the superblock extension, holding information about
+ * the file-wide shared message "SOHM" table
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_SHMESG[1];
+
+/* Object Header Continuation Message. (0x0010) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_CONT[1];
+
+/* Symbol Table Message. (0x0011) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_STAB[1];
+
+/* New Modification Time Message. (0x0012) */
+/*
+ * The message is just a `time_t'.
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_MTIME_NEW[1];
+
+/* v1 B-tree 'K' value message (0x0013)
+ * A message for the superblock extension, holding information about
+ * the file-wide v1 B-tree 'K' values.
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_BTREEK[1];
+
+/* Driver info message (0x0014)
+ * A message for the superblock extension, holding information about
+ * the file driver settings
+ */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_DRVINFO[1];
+
+/* Attribute Information Message. (0x0015) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_AINFO[1];
+
+/* Reference Count Message. (0x0016) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_REFCOUNT[1];
+
+/* Placeholder for unknown message. (0x0017) */
+H5_DLLVAR const H5O_msg_class_t H5O_MSG_UNKNOWN[1];
+
+
+/*
+ * Object header "object" types
+ */
+
+/* Group Object. (H5O_TYPE_GROUP - 0) */
+H5_DLLVAR const H5O_obj_class_t H5O_OBJ_GROUP[1];
+
+/* Dataset Object. (H5O_TYPE_DATASET - 1) */
+H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATASET[1];
+
+/* Datatype Object. (H5O_TYPE_NAMED_DATATYPE - 2) */
+H5_DLLVAR const H5O_obj_class_t H5O_OBJ_DATATYPE[1];
+
+
+/* Package-local function prototypes */
+H5_DLL herr_t H5O_msg_flush(H5F_t *f, H5O_t *oh, H5O_mesg_t *mesg);
+H5_DLL herr_t H5O_flush_msgs(H5F_t *f, H5O_t *oh);
+H5_DLL hid_t H5O_open_by_loc(const H5G_loc_t *obj_loc, hid_t lapl_id, hid_t dxpl_id, hbool_t app_ref);
+H5_DLL herr_t H5O_delete_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, H5O_mesg_t *mesg);
+H5_DLL const H5O_obj_class_t * H5O_obj_class(const H5O_loc_t *loc, hid_t dxpl_id);
+H5_DLL int H5O_link_oh(H5F_t *f, int adjust, hid_t dxpl_id, H5O_t *oh, hbool_t *deleted);
+H5_DLL herr_t H5O_inc_rc(H5O_t *oh);
+H5_DLL herr_t H5O_dec_rc(H5O_t *oh);
+H5_DLL herr_t H5O_free(H5O_t *oh);
+
+/* Object header message routines */
+H5_DLL herr_t H5O_msg_alloc(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ const H5O_msg_class_t *type, unsigned *mesg_flags, void *mesg,
+ size_t *mesg_idx);
+H5_DLL herr_t H5O_msg_append_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ const H5O_msg_class_t *type, unsigned mesg_flags, unsigned update_flags,
+ void *mesg);
+H5_DLL herr_t H5O_msg_write_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ const H5O_msg_class_t *type, unsigned mesg_flags, unsigned update_flags,
+ void *mesg);
+H5_DLL void *H5O_msg_free_real(const H5O_msg_class_t *type, void *mesg);
+H5_DLL herr_t H5O_msg_free_mesg(H5O_mesg_t *mesg);
+H5_DLL unsigned H5O_msg_count_real(const H5O_t *oh, const H5O_msg_class_t *type);
+H5_DLL herr_t H5O_msg_remove_real(H5F_t *f, H5O_t *oh, const H5O_msg_class_t *type,
+ int sequence, H5O_operator_t op, void *op_data, hbool_t adj_link, hid_t dxpl_id);
+H5_DLL void *H5O_msg_copy_file(const H5O_msg_class_t *type, H5F_t *file_src,
+ void *mesg_src, H5F_t *file_dst, hbool_t *recompute_size,
+ unsigned *mesg_flags, H5O_copy_t *cpy_info, void *udata, hid_t dxpl_id);
+H5_DLL herr_t H5O_msg_iterate_real(H5F_t *f, H5O_t *oh, const H5O_msg_class_t *type,
+ const H5O_mesg_operator_t *op, void *op_data, hid_t dxpl_id);
+
+/* Object header chunk routines */
+H5_DLL herr_t H5O_chunk_add(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned idx);
+H5_DLL H5O_chunk_proxy_t *H5O_chunk_protect(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ unsigned idx);
+H5_DLL herr_t H5O_chunk_unprotect(H5F_t *f, hid_t dxpl_id,
+ H5O_chunk_proxy_t *chk_proxy, hbool_t chk_dirtied);
+H5_DLL herr_t H5O_chunk_update_idx(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned idx);
+H5_DLL herr_t H5O_chunk_resize(H5O_t *oh, H5O_chunk_proxy_t *chk_proxy);
+H5_DLL herr_t H5O_chunk_delete(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned idx);
+
+/* Collect storage info for btree and heap */
+H5_DLL herr_t H5O_attr_bh_info(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5_ih_info_t *bh_info);
+
+/* Object header allocation routines */
+H5_DLL herr_t H5O_alloc_msgs(H5O_t *oh, size_t min_alloc);
+H5_DLL herr_t H5O_alloc(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ const H5O_msg_class_t *type, const void *mesg, size_t *mesg_idx);
+H5_DLL herr_t H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
+H5_DLL herr_t H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ H5O_mesg_t *mesg, hbool_t adj_link);
+
+/* Shared object operators */
+H5_DLL void * H5O_shared_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
+ unsigned *ioflags, const uint8_t *buf, const H5O_msg_class_t *type);
+H5_DLL herr_t H5O_shared_encode(const H5F_t *f, uint8_t *buf/*out*/, const H5O_shared_t *sh_mesg);
+H5_DLL size_t H5O_shared_size(const H5F_t *f, const H5O_shared_t *sh_mesg);
+H5_DLL herr_t H5O_shared_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
+ const H5O_msg_class_t *mesg_type, H5O_shared_t *sh_mesg);
+H5_DLL herr_t H5O_shared_link(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
+ const H5O_msg_class_t *mesg_type, H5O_shared_t *sh_mesg);
+H5_DLL herr_t H5O_shared_copy_file(H5F_t *file_src, H5F_t *file_dst,
+ const H5O_msg_class_t *mesg_type, const void *_native_src, void *_native_dst,
+ hbool_t *recompute_size, unsigned *mesg_flags, H5O_copy_t *cpy_info,
+ void *udata, hid_t dxpl_id);
+H5_DLL herr_t H5O_shared_post_copy_file (H5F_t *f,
+ const H5O_msg_class_t *mesg_type, const H5O_shared_t *shared_src,
+ H5O_shared_t *shared_dst, unsigned *mesg_flags, hid_t dxpl_id,
+ H5O_copy_t *cpy_info);
+H5_DLL herr_t H5O_shared_debug(const H5O_shared_t *mesg, FILE *stream,
+ int indent, int fwidth);
+
+/* Attribute message operators */
+H5_DLL herr_t H5O_attr_reset(void *_mesg);
+H5_DLL herr_t H5O_attr_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg);
+H5_DLL herr_t H5O_attr_link(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg);
+H5_DLL herr_t H5O_attr_count_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
+ hsize_t *nattrs);
+
+
+/* These functions operate on object locations */
+H5_DLL H5O_loc_t *H5O_get_loc(hid_t id);
+
+/* Testing functions */
+#ifdef H5O_TESTING
+H5_DLL htri_t H5O_is_attr_empty_test(hid_t oid);
+H5_DLL htri_t H5O_is_attr_dense_test(hid_t oid);
+H5_DLL herr_t H5O_num_attrs_test(hid_t oid, hsize_t *nattrs);
+H5_DLL herr_t H5O_attr_dense_info_test(hid_t oid, hsize_t *name_count, hsize_t *corder_count);
+H5_DLL herr_t H5O_check_msg_marked_test(hid_t oid, hbool_t flag_val);
+H5_DLL herr_t H5O_expunge_chunks_test(const H5O_loc_t *oloc, hid_t dxpl_id);
+H5_DLL herr_t H5O_get_rc(const H5O_loc_t *oloc, hid_t dxpl_id, unsigned *rc);
+#endif /* H5O_TESTING */
+
+/* Object header debugging routines */
+#ifdef H5O_DEBUG
+H5_DLL herr_t H5O_assert(const H5O_t *oh);
+#endif /* H5O_DEBUG */
+H5_DLL herr_t H5O_debug_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, haddr_t addr, FILE *stream, int indent, int fwidth);
+
+#endif /* _H5Opkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Opublic.h b/Resources/windows-libs/HDF5/include/H5Opublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..32945e845ae81d3b7dae8fee424c250b1980ce7c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Opublic.h
@@ -0,0 +1,212 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Opublic.h
+ * Aug 5 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5O (object header)
+ * package.
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Opublic_H
+#define _H5Opublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Lpublic.h" /* Links */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Flags for object copy (H5Ocopy) */
+#define H5O_COPY_SHALLOW_HIERARCHY_FLAG (0x0001u) /* Copy only immediate members */
+#define H5O_COPY_EXPAND_SOFT_LINK_FLAG (0x0002u) /* Expand soft links into new objects */
+#define H5O_COPY_EXPAND_EXT_LINK_FLAG (0x0004u) /* Expand external links into new objects */
+#define H5O_COPY_EXPAND_REFERENCE_FLAG (0x0008u) /* Copy objects that are pointed by references */
+#define H5O_COPY_WITHOUT_ATTR_FLAG (0x0010u) /* Copy object without copying attributes */
+#define H5O_COPY_PRESERVE_NULL_FLAG (0x0020u) /* Copy NULL messages (empty space) */
+#define H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG (0x0040u) /* Merge committed datatypes in dest file */
+#define H5O_COPY_ALL (0x007Fu) /* All object copying flags (for internal checking) */
+
+/* Flags for shared message indexes.
+ * Pass these flags in using the mesg_type_flags parameter in
+ * H5P_set_shared_mesg_index.
+ * (Developers: These flags correspond to object header message type IDs,
+ * but we need to assign each kind of message to a different bit so that
+ * one index can hold multiple types.)
+ */
+#define H5O_SHMESG_NONE_FLAG 0x0000 /* No shared messages */
+#define H5O_SHMESG_SDSPACE_FLAG ((unsigned)1 << 0x0001) /* Simple Dataspace Message. */
+#define H5O_SHMESG_DTYPE_FLAG ((unsigned)1 << 0x0003) /* Datatype Message. */
+#define H5O_SHMESG_FILL_FLAG ((unsigned)1 << 0x0005) /* Fill Value Message. */
+#define H5O_SHMESG_PLINE_FLAG ((unsigned)1 << 0x000b) /* Filter pipeline message. */
+#define H5O_SHMESG_ATTR_FLAG ((unsigned)1 << 0x000c) /* Attribute Message. */
+#define H5O_SHMESG_ALL_FLAG (H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_FILL_FLAG | H5O_SHMESG_PLINE_FLAG | H5O_SHMESG_ATTR_FLAG)
+
+/* Object header status flag definitions */
+#define H5O_HDR_CHUNK0_SIZE 0x03 /* 2-bit field indicating # of bytes to store the size of chunk 0's data */
+#define H5O_HDR_ATTR_CRT_ORDER_TRACKED 0x04 /* Attribute creation order is tracked */
+#define H5O_HDR_ATTR_CRT_ORDER_INDEXED 0x08 /* Attribute creation order has index */
+#define H5O_HDR_ATTR_STORE_PHASE_CHANGE 0x10 /* Non-default attribute storage phase change values stored */
+#define H5O_HDR_STORE_TIMES 0x20 /* Store access, modification, change & birth times for object */
+#define H5O_HDR_ALL_FLAGS (H5O_HDR_CHUNK0_SIZE | H5O_HDR_ATTR_CRT_ORDER_TRACKED | H5O_HDR_ATTR_CRT_ORDER_INDEXED | H5O_HDR_ATTR_STORE_PHASE_CHANGE | H5O_HDR_STORE_TIMES)
+
+/* Maximum shared message values. Number of indexes is 8 to allow room to add
+ * new types of messages.
+ */
+#define H5O_SHMESG_MAX_NINDEXES 8
+#define H5O_SHMESG_MAX_LIST_SIZE 5000
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Types of objects in file */
+typedef enum H5O_type_t {
+ H5O_TYPE_UNKNOWN = -1, /* Unknown object type */
+ H5O_TYPE_GROUP, /* Object is a group */
+ H5O_TYPE_DATASET, /* Object is a dataset */
+ H5O_TYPE_NAMED_DATATYPE, /* Object is a named data type */
+ H5O_TYPE_NTYPES /* Number of different object types (must be last!) */
+} H5O_type_t;
+
+/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */
+typedef struct H5O_hdr_info_t {
+ unsigned version; /* Version number of header format in file */
+ unsigned nmesgs; /* Number of object header messages */
+ unsigned nchunks; /* Number of object header chunks */
+ unsigned flags; /* Object header status flags */
+ struct {
+ hsize_t total; /* Total space for storing object header in file */
+ hsize_t meta; /* Space within header for object header metadata information */
+ hsize_t mesg; /* Space within header for actual message information */
+ hsize_t free; /* Free space within object header */
+ } space;
+ struct {
+ uint64_t present; /* Flags to indicate presence of message type in header */
+ uint64_t shared; /* Flags to indicate message type is shared in header */
+ } mesg;
+} H5O_hdr_info_t;
+
+/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */
+typedef struct H5O_info_t {
+ unsigned long fileno; /* File number that object is located in */
+ haddr_t addr; /* Object address in file */
+ H5O_type_t type; /* Basic object type (group, dataset, etc.) */
+ unsigned rc; /* Reference count of object */
+ time_t atime; /* Access time */
+ time_t mtime; /* Modification time */
+ time_t ctime; /* Change time */
+ time_t btime; /* Birth time */
+ hsize_t num_attrs; /* # of attributes attached to object */
+ H5O_hdr_info_t hdr; /* Object header information */
+ /* Extra metadata storage for obj & attributes */
+ struct {
+ H5_ih_info_t obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */
+ H5_ih_info_t attr; /* v2 B-tree & heap for attributes */
+ } meta_size;
+} H5O_info_t;
+
+/* Typedef for message creation indexes */
+typedef uint32_t H5O_msg_crt_idx_t;
+
+/* Prototype for H5Ovisit/H5Ovisit_by_name() operator */
+typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info,
+ void *op_data);
+
+typedef enum H5O_mcdt_search_ret_t {
+ H5O_MCDT_SEARCH_ERROR = -1, /* Abort H5Ocopy */
+ H5O_MCDT_SEARCH_CONT, /* Continue the global search of all committed datatypes in the destination file */
+ H5O_MCDT_SEARCH_STOP /* Stop the search, but continue copying. The committed datatype will be copied but not merged. */
+} H5O_mcdt_search_ret_t;
+
+/* Callback to invoke when completing the search for a matching committed datatype from the committed dtype list */
+typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data);
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr);
+H5_DLL hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo);
+H5_DLL herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name,
+ hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Oincr_refcount(hid_t object_id);
+H5_DLL herr_t H5Odecr_refcount(hid_t object_id);
+H5_DLL herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
+ const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id);
+H5_DLL herr_t H5Oset_comment(hid_t obj_id, const char *comment);
+H5_DLL herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name,
+ const char *comment, hid_t lapl_id);
+H5_DLL ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize);
+H5_DLL ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name,
+ char *comment, size_t bufsize, hid_t lapl_id);
+H5_DLL herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order,
+ H5O_iterate_t op, void *op_data);
+H5_DLL herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op,
+ void *op_data, hid_t lapl_id);
+H5_DLL herr_t H5Oclose(hid_t object_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* Typedefs */
+
+/* A struct that's part of the H5G_stat_t routine (deprecated) */
+typedef struct H5O_stat_t {
+ hsize_t size; /* Total size of object header in file */
+ hsize_t free; /* Free space within object header */
+ unsigned nmesgs; /* Number of object header messages */
+ unsigned nchunks; /* Number of object header chunks */
+} H5O_stat_t;
+
+/* Function prototypes */
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Opublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Oshared.h b/Resources/windows-libs/HDF5/include/H5Oshared.h
new file mode 100644
index 0000000000000000000000000000000000000000..3ec570902013b28f167f2b6d4f5ef0b699e20416
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Oshared.h
@@ -0,0 +1,491 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Friday, January 19, 2007
+ *
+ * Purpose: This file contains inline definitions for "generic" routines
+ * supporting a "shared message interface" (ala Java) for object
+ * header messages that can be shared. This interface is
+ * dependent on a bunch of macros being defined which define
+ * the name of the interface and "real" methods which need to
+ * be implemented for each message class that supports the
+ * shared message interface.
+ */
+
+#ifndef H5Oshared_H
+#define H5Oshared_H
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_DECODE
+ *
+ * Purpose: Decode an object header message that may be shared.
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Pointer to the new message in native form
+ * Failure: NULL
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline void *
+H5O_SHARED_DECODE(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, unsigned mesg_flags,
+ unsigned *ioflags, const uint8_t *p)
+{
+ void *ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_DECODE
+#error "Need to define H5O_SHARED_DECODE macro!"
+#endif /* H5O_SHARED_DECODE */
+#ifndef H5O_SHARED_DECODE_REAL
+#error "Need to define H5O_SHARED_DECODE_REAL macro!"
+#endif /* H5O_SHARED_DECODE_REAL */
+
+ /* Check for shared message */
+ if(mesg_flags & H5O_MSG_FLAG_SHARED) {
+ /* Retrieve native message info indirectly through shared message */
+ if(NULL == (ret_value = H5O_shared_decode(f, dxpl_id, open_oh, ioflags, p, H5O_SHARED_TYPE)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode shared message")
+
+ /* We currently do not support automatically fixing shared messages */
+#ifdef H5_STRICT_FORMAT_CHECKS
+ if(*ioflags & H5O_DECODEIO_DIRTY)
+ HGOTO_ERROR(H5E_OHDR, H5E_UNSUPPORTED, NULL, "unable to mark shared message dirty")
+#else /* H5_STRICT_FORMAT_CHECKS */
+ *ioflags &= ~H5O_DECODEIO_DIRTY;
+#endif /* H5_STRICT_FORMAT_CHECKS */
+ } /* end if */
+ else {
+ /* Decode native message directly */
+ if(NULL == (ret_value = H5O_SHARED_DECODE_REAL(f, dxpl_id, open_oh, mesg_flags, ioflags, p)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode native message")
+ } /* end else */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_DECODE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_ENCODE
+ *
+ * Purpose: Encode an object header message that may be shared.
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline herr_t
+H5O_SHARED_ENCODE(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg)
+{
+ const H5O_shared_t *sh_mesg = (const H5O_shared_t *)_mesg; /* Pointer to shared message portion of actual message */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_ENCODE
+#error "Need to define H5O_SHARED_ENCODE macro!"
+#endif /* H5O_SHARED_ENCODE */
+#ifndef H5O_SHARED_ENCODE_REAL
+#error "Need to define H5O_SHARED_ENCODE_REAL macro!"
+#endif /* H5O_SHARED_ENCODE_REAL */
+
+ /* Sanity check */
+ HDassert(sh_mesg->type == H5O_SHARE_TYPE_UNSHARED || sh_mesg->msg_type_id == H5O_SHARED_TYPE->id);
+
+ /* Check for message stored elsewhere */
+ if(H5O_IS_STORED_SHARED(sh_mesg->type) && !disable_shared) {
+ /* Encode shared message into buffer */
+ if(H5O_shared_encode(f, p, sh_mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to encode shared message")
+ } /* end if */
+ else {
+ /* Encode native message directly */
+ if(H5O_SHARED_ENCODE_REAL(f, p, _mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to encode native message")
+ } /* end else */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_ENCODE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_SIZE
+ *
+ * Purpose: Returns the length of an encoded message.
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Length
+ * Failure: 0
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline size_t
+H5O_SHARED_SIZE(const H5F_t *f, hbool_t disable_shared, const void *_mesg)
+{
+ const H5O_shared_t *sh_mesg = (const H5O_shared_t *)_mesg; /* Pointer to shared message portion of actual message */
+ size_t ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_SIZE
+#error "Need to define H5O_SHARED_SIZE macro!"
+#endif /* H5O_SHARED_SIZE */
+#ifndef H5O_SHARED_SIZE_REAL
+#error "Need to define H5O_SHARED_SIZE_REAL macro!"
+#endif /* H5O_SHARED_SIZE_REAL */
+
+ /* Check for message stored elsewhere */
+ if(H5O_IS_STORED_SHARED(sh_mesg->type) && !disable_shared) {
+ /* Retrieve encoded size of shared message */
+ if(0 == (ret_value = H5O_shared_size(f, sh_mesg)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, 0, "unable to retrieve encoded size of shared message")
+ } /* end if */
+ else {
+ /* Retrieve size of native message directly */
+ if(0 == (ret_value = H5O_SHARED_SIZE_REAL(f, _mesg)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, 0, "unable to retrieve encoded size of native message")
+ } /* end else */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_SIZE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_DELETE
+ *
+ * Purpose: Decrement reference count on any objects referenced by
+ * message
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline herr_t
+H5O_SHARED_DELETE(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg)
+{
+ H5O_shared_t *sh_mesg = (H5O_shared_t *)_mesg; /* Pointer to shared message portion of actual message */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_DELETE
+#error "Need to define H5O_SHARED_DELETE macro!"
+#endif /* H5O_SHARED_DELETE */
+
+ /* Check for message tracked elsewhere */
+ if(H5O_IS_TRACKED_SHARED(sh_mesg->type)) {
+ /* Decrement the reference count on the shared message/object */
+ if(H5O_shared_delete(f, dxpl_id, open_oh, H5O_SHARED_TYPE, sh_mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for shared message")
+ } /* end if */
+#ifdef H5O_SHARED_DELETE_REAL
+ else {
+ /* Decrement the reference count on the native message directly */
+ if(H5O_SHARED_DELETE_REAL(f, dxpl_id, open_oh, _mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTDEC, FAIL, "unable to decrement ref count for native message")
+ } /* end else */
+#endif /* H5O_SHARED_DELETE_REAL */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_DELETE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_LINK
+ *
+ * Purpose: Increment reference count on any objects referenced by
+ * message
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline herr_t
+H5O_SHARED_LINK(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg)
+{
+ H5O_shared_t *sh_mesg = (H5O_shared_t *)_mesg; /* Pointer to shared message portion of actual message */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_LINK
+#error "Need to define H5O_SHARED_LINK macro!"
+#endif /* H5O_SHARED_LINK */
+
+ /* Check for message tracked elsewhere */
+ if(H5O_IS_TRACKED_SHARED(sh_mesg->type)) {
+ /* Increment the reference count on the shared message/object */
+ if(H5O_shared_link(f, dxpl_id, open_oh, H5O_SHARED_TYPE, sh_mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINC, FAIL, "unable to increment ref count for shared message")
+ } /* end if */
+#ifdef H5O_SHARED_LINK_REAL
+ else {
+ /* Increment the reference count on the native message directly */
+ if(H5O_SHARED_LINK_REAL(f, dxpl_id, open_oh, _mesg) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTINC, FAIL, "unable to increment ref count for native message")
+ } /* end else */
+#endif /* H5O_SHARED_LINK_REAL */
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_LINK() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_COPY_FILE
+ *
+ * Purpose: Copies a message from _SRC to _DEST in file
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Friday, January 19, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline void *
+H5O_SHARED_COPY_FILE(H5F_t *file_src, void *_native_src, H5F_t *file_dst,
+ hbool_t *recompute_size, unsigned *mesg_flags, H5O_copy_t *cpy_info,
+ void *udata, hid_t dxpl_id)
+{
+ void *dst_mesg = NULL; /* Destination message */
+ void *ret_value; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_COPY_FILE
+#error "Need to define H5O_SHARED_COPY_FILE macro!"
+#endif /* H5O_SHARED_COPY_FILE */
+
+#ifdef H5O_SHARED_COPY_FILE_REAL
+ /* Call native message's copy file callback to copy the message */
+ if(NULL == (dst_mesg = H5O_SHARED_COPY_FILE_REAL(file_src, H5O_SHARED_TYPE, _native_src, file_dst, recompute_size, cpy_info, udata, dxpl_id)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy native message to another file")
+#else /* H5O_SHARED_COPY_FILE_REAL */
+ /* No copy file callback defined, just copy the message itself */
+ if(NULL == (dst_mesg = (H5O_SHARED_TYPE->copy)(_native_src, NULL)))
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy native message")
+#endif /* H5O_SHARED_COPY_FILE_REAL */
+
+ /* Reset shared message info for new message */
+ HDmemset(dst_mesg, 0, sizeof(H5O_shared_t));
+
+ /* Handle sharing destination message */
+ if(H5O_shared_copy_file(file_src, file_dst, H5O_SHARED_TYPE, _native_src,
+ dst_mesg, recompute_size, mesg_flags, cpy_info, udata, dxpl_id) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, NULL, "unable to determine if message should be shared")
+
+ /* Set return value */
+ ret_value = dst_mesg;
+
+done:
+ if(!ret_value)
+ if(dst_mesg)
+ H5O_msg_free(H5O_SHARED_TYPE->id, dst_mesg);
+
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_COPY_FILE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_POST_COPY_FILE
+ *
+ * Purpose: Copies a message from _SRC to _DEST in file
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Peter Cao
+ * May 25, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline herr_t
+H5O_SHARED_POST_COPY_FILE(const H5O_loc_t *oloc_src, const void *mesg_src,
+ H5O_loc_t *oloc_dst, void *mesg_dst, unsigned *mesg_flags, hid_t dxpl_id,
+ H5O_copy_t *cpy_info)
+{
+ const H5O_shared_t *shared_src = (const H5O_shared_t *)mesg_src; /* Alias to shared info in native source */
+ H5O_shared_t *shared_dst = (H5O_shared_t *)mesg_dst; /* Alias to shared info in native destination */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+ HDassert(oloc_src->file);
+ HDassert(oloc_dst->file);
+ HDassert(mesg_src);
+ HDassert(mesg_dst);
+ HDassert(cpy_info);
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_POST_COPY_FILE
+#error "Need to define H5O_SHARED_POST_COPY_FILE macro!"
+#endif /* H5O_SHARED_POST_COPY_FILE */
+
+#ifdef H5O_SHARED_POST_COPY_FILE_REAL
+ /* Call native message's post copy file callback to copy the message */
+ if(H5O_SHARED_POST_COPY_FILE_REAL(oloc_src, mesg_src, oloc_dst, mesg_dst, dxpl_id, cpy_info) <0 )
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy native message to another file")
+#endif /* H5O_SHARED_POST_COPY_FILE_REAL */
+
+ /* Update shared message after the post copy - will short circuit in
+ * production if the DEFER pass determined it will not be shared; debug mode
+ * verifies that it is indeed the case */
+ if(H5O_shared_post_copy_file(oloc_dst->file, H5O_SHARED_TYPE,
+ shared_src, shared_dst, mesg_flags, dxpl_id, cpy_info) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to fix shared message in post copy")
+
+#ifdef H5O_SHARED_POST_COPY_FILE_UPD
+ /* Call native message's post copy file update callback to update the
+ * message */
+ if(H5O_SHARED_POST_COPY_FILE_UPD(oloc_src, mesg_src, oloc_dst, mesg_dst, dxpl_id, cpy_info) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to update native message")
+#endif /* H5O_SHARED_POST_COPY_FILE_UPD */
+
+ /* Make sure that if the the source or destination is committed, both are
+ * committed */
+ HDassert((shared_src->type == H5O_SHARE_TYPE_COMMITTED)
+ == (shared_dst->type == H5O_SHARE_TYPE_COMMITTED));
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_POST_COPY_FILE() */
+
+
+/*-------------------------------------------------------------------------
+ * Function: H5O_SHARED_DEBUG
+ *
+ * Purpose: Prints debugging info for a potentially shared message.
+ *
+ * Note: The actual name of this routine can be different in each source
+ * file that this header file is included in, and must be defined
+ * prior to including this header file.
+ *
+ * Return: Success: Non-negative
+ * Failure: Negative
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, February 3, 2007
+ *
+ *-------------------------------------------------------------------------
+ */
+static H5_inline herr_t
+H5O_SHARED_DEBUG(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE *stream,
+ int indent, int fwidth)
+{
+ const H5O_shared_t *sh_mesg = (const H5O_shared_t *)_mesg; /* Pointer to shared message portion of actual message */
+ herr_t ret_value = SUCCEED; /* Return value */
+
+ FUNC_ENTER_NOAPI_NOINIT
+
+#ifndef H5O_SHARED_TYPE
+#error "Need to define H5O_SHARED_TYPE macro!"
+#endif /* H5O_SHARED_TYPE */
+#ifndef H5O_SHARED_DEBUG
+#error "Need to define H5O_SHARED_DEBUG macro!"
+#endif /* H5O_SHARED_DEBUG */
+#ifndef H5O_SHARED_DEBUG_REAL
+#error "Need to define H5O_SHARED_DEBUG_REAL macro!"
+#endif /* H5O_SHARED_DEBUG_REAL */
+
+ /* Check for message stored elsewhere */
+ if(H5O_IS_STORED_SHARED(sh_mesg->type)) {
+ /* Print shared message information */
+ if(H5O_shared_debug(sh_mesg, stream, indent, fwidth) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to display shared message info")
+ } /* end if */
+
+ /* Call native message's debug callback */
+ if(H5O_SHARED_DEBUG_REAL(f, dxpl_id, _mesg, stream, indent, fwidth) < 0)
+ HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to display native message info")
+
+done:
+ FUNC_LEAVE_NOAPI(ret_value)
+} /* end H5O_SHARED_DEBUG() */
+
+#endif /* H5Oshared_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5PLextern.h b/Resources/windows-libs/HDF5/include/H5PLextern.h
new file mode 100644
index 0000000000000000000000000000000000000000..f94101d818a1cda5e73635651f6c5c98f5ccaff8
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5PLextern.h
@@ -0,0 +1,87 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic document set and is *
+ * linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access *
+ * to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Raymond Lu <songyulu@hdfgroup.org>
+ * 13 February 2013
+ */
+#ifndef _H5PLextern_H
+#define _H5PLextern_H
+
+/* Include HDF5 header */
+#include "hdf5.h"
+
+#ifndef H5_VMS
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Plugin type */
+typedef enum H5PL_type_t {
+ H5PL_TYPE_ERROR = -1, /*error */
+ H5PL_TYPE_FILTER = 0, /*filter */
+ H5PL_TYPE_NONE = 1 /*this must be last! */
+} H5PL_type_t;
+
+
+#ifdef H5_BUILT_AS_DYNAMIC_LIB
+
+ #if defined (hdf5_EXPORTS)
+ /* hdf5 library imports from plugin */
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5PLUGIN_DLL __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5PLUGIN_DLL __attribute__ ((visibility("default")))
+ #endif
+ #else
+ /* plugins always export */
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5PLUGIN_DLL __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5PLUGIN_DLL __attribute__ ((visibility("default")))
+ #endif
+ #endif
+
+#elif defined(H5_BUILT_AS_STATIC_LIB)
+ #define H5PLUGIN_DLL
+#else
+
+ #if defined(H5_HAVE_WIN32_API)
+ #if defined(_HDF5DLL_)
+ #pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+ #define H5PLUGIN_DLL __declspec(dllimport)
+ #elif defined(_HDF5USEDLL_)
+ #define H5PLUGIN_DLL __declspec(dllexport)
+ #endif /* _HDF5DLL_ */
+ #else /*H5_HAVE_WIN32_API*/
+ #define H5PLUGIN_DLL
+ #endif /*H5_HAVE_WIN32_API*/
+
+#endif /* H5_BUILT_AS_xxx_LIB */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5PLUGIN_DLL H5PL_type_t H5PLget_plugin_type(void);
+H5PLUGIN_DLL const void *H5PLget_plugin_info(void);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /*H5_VMS*/
+
+#endif /* _H5PLextern_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5PTpublic.h b/Resources/windows-libs/HDF5/include/H5PTpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..f919010591917cb356bf08c99381368bc848d444
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5PTpublic.h
@@ -0,0 +1,127 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5PTpublic_H
+#define _H5PTpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Create/Open/Close functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5PTcreate_fl ( hid_t loc_id,
+ const char *dset_name,
+ hid_t dtype_id,
+ hsize_t chunk_size,
+ int compression );
+
+#ifdef VLPT_REMOVED
+H5_HLDLL hid_t H5PTcreate_vl ( hid_t loc_id,
+ const char *dset_name,
+ hsize_t chunk_size );
+#endif /* VLPT_REMOVED */
+
+H5_HLDLL hid_t H5PTopen( hid_t loc_id,
+ const char *dset_name );
+
+H5_HLDLL herr_t H5PTclose( hid_t table_id );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Write functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5PTappend( hid_t table_id,
+ size_t nrecords,
+ const void * data );
+
+/*-------------------------------------------------------------------------
+ *
+ * Read functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5PTget_next( hid_t table_id,
+ size_t nrecords,
+ void * data );
+
+H5_HLDLL herr_t H5PTread_packets( hid_t table_id,
+ hsize_t start,
+ size_t nrecords,
+ void *data );
+
+/*-------------------------------------------------------------------------
+ *
+ * Inquiry functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5PTget_num_packets( hid_t table_id,
+ hsize_t *nrecords );
+
+H5_HLDLL herr_t H5PTis_valid( hid_t table_id );
+
+#ifdef VLPT_REMOVED
+H5_HLDLL herr_t H5PTis_varlen( hid_t table_id );
+#endif /* VLPT_REMOVED */
+
+/*-------------------------------------------------------------------------
+ *
+ * Packet Table "current index" functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5PTcreate_index( hid_t table_id );
+
+H5_HLDLL herr_t H5PTset_index( hid_t table_id,
+ hsize_t pt_index );
+
+H5_HLDLL herr_t H5PTget_index( hid_t table_id,
+ hsize_t *pt_index );
+
+/*-------------------------------------------------------------------------
+ *
+ * Memory Management functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#ifdef VLPT_REMOVED
+H5_HLDLL herr_t H5PTfree_vlen_readbuff( hid_t table_id,
+ size_t bufflen,
+ void * buff );
+#endif /* VLPT_REMOVED */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5PacketTable.h b/Resources/windows-libs/HDF5/include/H5PacketTable.h
new file mode 100644
index 0000000000000000000000000000000000000000..5f9a21339f4bdf6b1211c139d37b45dcc215ab75
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5PacketTable.h
@@ -0,0 +1,244 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Packet Table wrapper classes
+ *
+ * Wraps the H5PT Packet Table C functions in C++ objects
+ *
+ * Nat Furrer and James Laird
+ * February 2004
+ */
+
+#ifndef H5PTWRAP_H
+#define H5PTWRAP_H
+
+/* Public HDF5 header */
+#include "hdf5.h"
+
+#include "H5PTpublic.h"
+#include "H5api_adpt.h"
+
+class H5_HLCPPDLL PacketTable
+{
+public:
+ /* Null constructor
+ * Sets table_id to "invalid"
+ */
+ PacketTable() {table_id = H5I_BADID;}
+
+ /* "Open" Constructor
+ * Opens an existing packet table, which can contain either fixed-length or
+ * variable-length packets.
+ */
+ PacketTable(hid_t fileID, char* name);
+
+ /* Destructor
+ * Cleans up the packet table
+ */
+ ~PacketTable();
+
+ /* IsValid
+ * Returns true if this packet table is valid, false otherwise.
+ * Use this after the constructor to ensure HDF did not have
+ * any trouble making or opening the packet table.
+ */
+ bool IsValid();
+
+#ifdef VLPT_REMOVED
+ /* IsVariableLength
+ * Return 1 if this packet table is a Variable Length packet table,
+ * return 0 if it is Fixed Length. Returns -1 if the table is
+ * invalid (not open).
+ */
+ int IsVariableLength();
+#endif /* VLPT_REMOVED */
+
+ /* ResetIndex
+ * Sets the "current packet" index to point to the first packet in the
+ * packet table
+ */
+ void ResetIndex();
+
+ /* SetIndex
+ * Sets the current packet to point to the packet specified by index.
+ * Returns 0 on success, negative on failure (if index is out of bounds)
+ */
+ int SetIndex(hsize_t index);
+
+ /* GetIndex
+ * Returns the position of the current packet.
+ * On failure, returns 0 and error is set to negative.
+ */
+ hsize_t GetIndex(int& error);
+
+ /* GetPacketCount
+ * Returns the number of packets in the packet table. Error
+ * is set to 0 on success. On failure, returns 0 and
+ * error is set to negative.
+ */
+ hsize_t GetPacketCount(int& error);
+
+ hsize_t GetPacketCount()
+ {
+ int ignoreError;
+ return GetPacketCount(ignoreError);
+ }
+
+protected:
+ hid_t table_id;
+};
+
+class H5_HLCPPDLL FL_PacketTable : virtual public PacketTable
+{
+public:
+ /* Constructor
+ * Creates a packet table in which to store fixed length packets.
+ * Takes the ID of the file the packet table will be created in, the name of
+ * the packet table, the ID of the datatype of the set, the size
+ * of a memory chunk used in chunking, and the desired compression level
+ * (0-9, or -1 for no compression).
+ */
+ FL_PacketTable(hid_t fileID, char* name, hid_t dtypeID, hsize_t chunkSize, int compression = -1);
+
+ /* "Open" Constructor
+ * Opens an existing fixed-length packet table.
+ * Fails if the packet table specified is variable-length.
+ */
+ FL_PacketTable(hid_t fileID, char* name);
+
+ /* AppendPacket
+ * Adds a single packet to the packet table. Takes a pointer
+ * to the location of the data in memory.
+ * Returns 0 on success, negative on failure
+ */
+ int AppendPacket(void * data);
+
+ /* AppendPackets (multiple packets)
+ * Adds multiple packets to the packet table. Takes the number of packets
+ * to be added and a pointer to their location in memory.
+ * Returns 0 on success, -1 on failure.
+ */
+ int AppendPackets(size_t numPackets, void * data);
+
+ /* GetPacket (indexed)
+ * Gets a single packet from the packet table. Takes the index
+ * of the packet (with 0 being the first packet) and a pointer
+ * to memory where the data should be stored.
+ * Returns 0 on success, negative on failure
+ */
+ int GetPacket(hsize_t index, void * data);
+
+ /* GetPackets (multiple packets)
+ * Gets multiple packets at once, all packets between
+ * startIndex and endIndex inclusive. Also takes a pointer to
+ * the memory where these packets should be stored.
+ * Returns 0 on success, negative on failure.
+ */
+ int GetPackets(hsize_t startIndex, hsize_t endIndex, void * data);
+
+ /* GetNextPacket (single packet)
+ * Gets the next packet in the packet table. Takes a pointer to
+ * memory where the packet should be stored.
+ * Returns 0 on success, negative on failure. Index
+ * is not advanced to the next packet on failure.
+ */
+ int GetNextPacket(void * data);
+
+ /* GetNextPackets (multiple packets)
+ * Gets the next numPackets packets in the packet table. Takes a
+ * pointer to memory where these packets should be stored.
+ * Returns 0 on success, negative on failure. Index
+ * is not advanced on failure.
+ */
+ int GetNextPackets(size_t numPackets, void * data);
+};
+
+#ifdef VLPT_REMOVED
+class H5_HLCPPDLL VL_PacketTable : virtual public PacketTable
+{
+public:
+ /* Constructor
+ * Creates a packet table in which to store variable length packets.
+ * Takes the ID of the file the packet table will be created in, the name of
+ * the packet table, and the size of a memory chunk used in chunking.
+ */
+ VL_PacketTable(hid_t fileID, char* name, hsize_t chunkSize);
+
+ /* "Open" Constructor
+ * Opens an existing variable-length packet table.
+ * Fails if the packet table specified is fixed-length.
+ */
+ VL_PacketTable(hid_t fileID, char* name);
+
+ /* AppendPacket
+ * Adds a single packet of any length to the packet table.
+ * Takes a pointer to the location of the data in memory and the length of the data
+ * in bytes.
+ * Returns 0 on success, negative on failure.
+ */
+ int AppendPacket(void * data, size_t length);
+
+ /* AppendPackets (multiple packets)
+ * Adds multiple variable-length packets to the packet table. Takes the
+ * number of packets to be added and a pointer to an array of
+ * hvl_t structs in memory.
+ * Returns 0 on success, negative on failure.
+ */
+ int AppendPackets(size_t numPackets, hvl_t * data);
+
+ /* GetPacket (indexed)
+ * Gets a single variable-length packet from the packet table. Takes
+ * the index of the packet (with 0 being the first packet) and a pointer
+ * to a hvl_t struct in which to store the packet's size and location.
+ * Returns 0 on success, negative on failure.
+ */
+ int GetPacket(hsize_t index, hvl_t * data);
+
+ /* GetPackets (multiple packets)
+ * Gets multiple variable-length packets at once, all packets between
+ * startIndex and endIndex inclusive. Takes a pointer to an array
+ * of hvl_t structs in memory in which to store pointers to the packets.
+ * Returns 0 on success, negative on failure.
+ */
+ int GetPackets(hsize_t startIndex, hsize_t endIndex, hvl_t * data);
+
+ /* GetNextPacket (single packet)
+ * Gets the next packet in the packet table. Takes a pointer to
+ * an hvl_t struct where the packet should be stored.
+ * Returns 0 on success, negative on failure. Index
+ * is not advanced to the next packet on failure.
+ */
+ int GetNextPacket(hvl_t * data);
+
+ /* GetNextPackets (multiple packets)
+ * Gets the next numPackets packets in the packet table. Takes a
+ * pointer to an array of hvl_t structs where pointers to the packets
+ * should be stored.
+ * Returns 0 on success, negative on failure. Index
+ * is not advanced on failure.
+ */
+ int GetNextPackets(size_t numPackets, hvl_t * data);
+
+ /* FreeReadbuff
+ * Frees the buffers created when variable-length packets are read.
+ * Takes the number of hvl_t structs to be freed and a pointer to their
+ * location in memory.
+ * Returns 0 on success, negative on error.
+ */
+ int FreeReadbuff(size_t numStructs, hvl_t * buffer);
+};
+#endif /* VLPT_REMOVED */
+
+#endif /* H5PTWRAP_H */
diff --git a/Resources/windows-libs/HDF5/include/H5Ppkg.h b/Resources/windows-libs/HDF5/include/H5Ppkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..293420ecb5bcf616446b205b78f200f3173a73d0
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Ppkg.h
@@ -0,0 +1,209 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Friday, November 16, 2001
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5P package. Source files outside the H5P package should
+ * include H5Pprivate.h instead.
+ */
+#ifndef H5P_PACKAGE
+#error "Do not include this file outside the H5P package!"
+#endif
+
+#ifndef _H5Ppkg_H
+#define _H5Ppkg_H
+
+/* Get package's private header */
+#include "H5Pprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5SLprivate.h" /* Skip lists */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+/* Define enum for type of object that property is within */
+typedef enum {
+ H5P_PROP_WITHIN_UNKNOWN=0, /* Property container is unknown */
+ H5P_PROP_WITHIN_LIST, /* Property is within a list */
+ H5P_PROP_WITHIN_CLASS /* Property is within a class */
+} H5P_prop_within_t;
+
+/* Define enum for modifications to class */
+typedef enum {
+ H5P_MOD_ERR=(-1), /* Indicate an error */
+ H5P_MOD_INC_CLS, /* Increment the dependant class count*/
+ H5P_MOD_DEC_CLS, /* Decrement the dependant class count*/
+ H5P_MOD_INC_LST, /* Increment the dependant list count*/
+ H5P_MOD_DEC_LST, /* Decrement the dependant list count*/
+ H5P_MOD_INC_REF, /* Increment the ID reference count*/
+ H5P_MOD_DEC_REF, /* Decrement the ID reference count*/
+ H5P_MOD_MAX /* Upper limit on class modifications */
+} H5P_class_mod_t;
+
+/* Define structure to hold property information */
+typedef struct H5P_genprop_t {
+ /* Values for this property */
+ char *name; /* Name of property */
+ size_t size; /* Size of property value */
+ void *value; /* Pointer to property value */
+ H5P_prop_within_t type; /* Type of object the property is within */
+ hbool_t shared_name; /* Whether the name is shared or not */
+
+ /* Callback function pointers & info */
+ H5P_prp_create_func_t create; /* Function to call when a property is created */
+ H5P_prp_set_func_t set; /* Function to call when a property value is set */
+ H5P_prp_get_func_t get; /* Function to call when a property value is retrieved */
+ H5P_prp_delete_func_t del; /* Function to call when a property is deleted */
+ H5P_prp_copy_func_t copy; /* Function to call when a property is copied */
+ H5P_prp_compare_func_t cmp; /* Function to call when a property is compared */
+ H5P_prp_close_func_t close; /* Function to call when a property is closed */
+} H5P_genprop_t;
+
+/* Define structure to hold class information */
+struct H5P_genclass_t {
+ struct H5P_genclass_t *parent; /* Pointer to parent class */
+ char *name; /* Name of property list class */
+ H5P_plist_type_t type; /* Type of property */
+ size_t nprops; /* Number of properties in class */
+ unsigned plists; /* Number of property lists that have been created since the last modification to the class */
+ unsigned classes; /* Number of classes that have been derived since the last modification to the class */
+ unsigned ref_count; /* Number of oustanding ID's open on this class object */
+ hbool_t deleted; /* Whether this class has been deleted and is waiting for dependent classes & proplists to close */
+ unsigned revision; /* Revision number of a particular class (global) */
+ H5SL_t *props; /* Skip list containing properties */
+
+ /* Callback function pointers & info */
+ H5P_cls_create_func_t create_func; /* Function to call when a property list is created */
+ void *create_data; /* Pointer to user data to pass along to create callback */
+ H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */
+ void *copy_data; /* Pointer to user data to pass along to copy callback */
+ H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */
+ void *close_data; /* Pointer to user data to pass along to close callback */
+};
+
+/* Define structure to hold property list information */
+struct H5P_genplist_t {
+ H5P_genclass_t *pclass; /* Pointer to class info */
+ hid_t plist_id; /* Copy of the property list ID (for use in close callback) */
+ size_t nprops; /* Number of properties in class */
+ hbool_t class_init; /* Whether the class initialization callback finished successfully */
+ H5SL_t *del; /* Skip list containing names of deleted properties */
+ H5SL_t *props; /* Skip list containing properties */
+};
+
+/* Function pointer for library classes with properties to register */
+typedef herr_t (*H5P_init_class_op_t)(H5P_genclass_t *pclass);
+typedef herr_t (*H5P_reg_prop_func_t)(H5P_genclass_t *pclass);
+
+/*
+ * Each library property list class has a variable of this type that contains
+ * class variables and methods used to initialize the class.
+ */
+typedef struct H5P_libclass_t {
+ const char *name; /* Class name */
+ H5P_plist_type_t type; /* Class type */
+
+ hid_t const * const par_class_id; /* Pointer to global parent class property list class ID */
+ hid_t * const class_id; /* Pointer to global property list class ID */
+ hid_t * const def_plist_id; /* Pointer to global default property list ID */
+ H5P_reg_prop_func_t reg_prop_func; /* Register class's properties */
+
+ /* Class callback function pointers & info */
+ H5P_cls_create_func_t create_func; /* Function to call when a property list is created */
+ void *create_data; /* Pointer to user data to pass along to create callback */
+ H5P_cls_copy_func_t copy_func; /* Function to call when a property list is copied */
+ void *copy_data; /* Pointer to user data to pass along to copy callback */
+ H5P_cls_close_func_t close_func; /* Function to call when a property list is closed */
+ void *close_data; /* Pointer to user data to pass along to close callback */
+} H5P_libclass_t;
+
+/* Property list/class iterator callback function pointer */
+typedef int (*H5P_iterate_int_t)(H5P_genprop_t *prop, void *udata);
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* Private functions, not part of the publicly documented API */
+H5_DLL herr_t H5P__term_pub_interface(void);
+H5_DLL herr_t H5P__term_deprec_interface(void);
+H5_DLL H5P_genclass_t *H5P_create_class(H5P_genclass_t *par_class,
+ const char *name, H5P_plist_type_t type,
+ H5P_cls_create_func_t cls_create, void *create_data,
+ H5P_cls_copy_func_t cls_copy, void *copy_data,
+ H5P_cls_close_func_t cls_close, void *close_data);
+H5_DLL H5P_genclass_t *H5P_copy_pclass(H5P_genclass_t *pclass);
+H5_DLL herr_t H5P_register_real(H5P_genclass_t *pclass, const char *name, size_t size,
+ const void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set,
+ H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete,
+ H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp,
+ H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5P_register(H5P_genclass_t **pclass, const char *name, size_t size,
+ const void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set,
+ H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete,
+ H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp,
+ H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5P_add_prop(H5SL_t *props, H5P_genprop_t *prop);
+H5_DLL herr_t H5P_access_class(H5P_genclass_t *pclass, H5P_class_mod_t mod);
+H5_DLL htri_t H5P_exist_pclass(H5P_genclass_t *pclass, const char *name);
+H5_DLL herr_t H5P_get_size_plist(const H5P_genplist_t *plist, const char *name,
+ size_t *size);
+H5_DLL herr_t H5P_get_size_pclass(H5P_genclass_t *pclass, const char *name,
+ size_t *size);
+H5_DLL H5P_genclass_t *H5P_get_class(const H5P_genplist_t *plist);
+H5_DLL herr_t H5P_get_nprops_plist(const H5P_genplist_t *plist, size_t *nprops);
+H5_DLL int H5P_cmp_class(const H5P_genclass_t *pclass1, const H5P_genclass_t *pclass2);
+H5_DLL herr_t H5P_cmp_plist(const H5P_genplist_t *plist1, const H5P_genplist_t *plist2,
+ int *cmp_ret);
+H5_DLL int H5P_iterate_plist(const H5P_genplist_t *plist, hbool_t iter_all_prop,
+ int *idx, H5P_iterate_int_t iter_func, void *iter_data);
+H5_DLL int H5P_iterate_pclass(const H5P_genclass_t *pclass, int *idx,
+ H5P_iterate_int_t iter_func, void *iter_data);
+H5_DLL herr_t H5P_copy_prop_plist(hid_t dst_id, hid_t src_id, const char *name);
+H5_DLL herr_t H5P_copy_prop_pclass(hid_t dst_id, hid_t src_id, const char *name);
+H5_DLL herr_t H5P_unregister(H5P_genclass_t *pclass, const char *name);
+H5_DLL char *H5P_get_class_path(H5P_genclass_t *pclass);
+H5_DLL H5P_genclass_t *H5P_open_class_path(const char *path);
+H5_DLL H5P_genclass_t *H5P_get_class_parent(const H5P_genclass_t *pclass);
+H5_DLL herr_t H5P_close_class(void *_pclass);
+H5_DLL herr_t H5P_get_filter(const H5Z_filter_info_t *filter,
+ unsigned int *flags, size_t *cd_nelmts, unsigned cd_values[],
+ size_t namelen, char name[], unsigned *filter_config);
+H5_DLL H5P_genprop_t *H5P__find_prop_plist(const H5P_genplist_t *plist, const char *name);
+
+/* Testing functions */
+#ifdef H5P_TESTING
+H5_DLL char *H5P_get_class_path_test(hid_t pclass_id);
+H5_DLL hid_t H5P_open_class_path_test(const char *path);
+H5_DLL herr_t H5P_reset_external_file_test(hid_t dcpl_id);
+#endif /* H5P_TESTING */
+
+#endif /* _H5Ppkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Ppublic.h b/Resources/windows-libs/HDF5/include/H5Ppublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..1d8ced44c023d4c8b5ee6ddc1aa5af9e91b03667
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Ppublic.h
@@ -0,0 +1,495 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains function prototypes for each exported function in the
+ * H5P module.
+ */
+#ifndef _H5Ppublic_H
+#define _H5Ppublic_H
+
+/* System headers needed by this file */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5ACpublic.h"
+#include "H5Dpublic.h"
+#include "H5Fpublic.h"
+#include "H5FDpublic.h"
+#include "H5Ipublic.h"
+#include "H5Lpublic.h"
+#include "H5Opublic.h"
+#include "H5MMpublic.h"
+#include "H5Tpublic.h"
+#include "H5Zpublic.h"
+
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* When this header is included from a private HDF5 header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/*
+ * The library's property list classes
+ */
+
+#define H5P_ROOT (H5OPEN H5P_CLS_ROOT_g)
+#define H5P_OBJECT_CREATE (H5OPEN H5P_CLS_OBJECT_CREATE_g)
+#define H5P_FILE_CREATE (H5OPEN H5P_CLS_FILE_CREATE_g)
+#define H5P_FILE_ACCESS (H5OPEN H5P_CLS_FILE_ACCESS_g)
+#define H5P_DATASET_CREATE (H5OPEN H5P_CLS_DATASET_CREATE_g)
+#define H5P_DATASET_ACCESS (H5OPEN H5P_CLS_DATASET_ACCESS_g)
+#define H5P_DATASET_XFER (H5OPEN H5P_CLS_DATASET_XFER_g)
+#define H5P_FILE_MOUNT (H5OPEN H5P_CLS_FILE_MOUNT_g)
+#define H5P_GROUP_CREATE (H5OPEN H5P_CLS_GROUP_CREATE_g)
+#define H5P_GROUP_ACCESS (H5OPEN H5P_CLS_GROUP_ACCESS_g)
+#define H5P_DATATYPE_CREATE (H5OPEN H5P_CLS_DATATYPE_CREATE_g)
+#define H5P_DATATYPE_ACCESS (H5OPEN H5P_CLS_DATATYPE_ACCESS_g)
+#define H5P_STRING_CREATE (H5OPEN H5P_CLS_STRING_CREATE_g)
+#define H5P_ATTRIBUTE_CREATE (H5OPEN H5P_CLS_ATTRIBUTE_CREATE_g)
+#define H5P_OBJECT_COPY (H5OPEN H5P_CLS_OBJECT_COPY_g)
+#define H5P_LINK_CREATE (H5OPEN H5P_CLS_LINK_CREATE_g)
+#define H5P_LINK_ACCESS (H5OPEN H5P_CLS_LINK_ACCESS_g)
+
+/*
+ * The library's default property lists
+ */
+#define H5P_FILE_CREATE_DEFAULT (H5OPEN H5P_LST_FILE_CREATE_g)
+#define H5P_FILE_ACCESS_DEFAULT (H5OPEN H5P_LST_FILE_ACCESS_g)
+#define H5P_DATASET_CREATE_DEFAULT (H5OPEN H5P_LST_DATASET_CREATE_g)
+#define H5P_DATASET_ACCESS_DEFAULT (H5OPEN H5P_LST_DATASET_ACCESS_g)
+#define H5P_DATASET_XFER_DEFAULT (H5OPEN H5P_LST_DATASET_XFER_g)
+#define H5P_FILE_MOUNT_DEFAULT (H5OPEN H5P_LST_FILE_MOUNT_g)
+#define H5P_GROUP_CREATE_DEFAULT (H5OPEN H5P_LST_GROUP_CREATE_g)
+#define H5P_GROUP_ACCESS_DEFAULT (H5OPEN H5P_LST_GROUP_ACCESS_g)
+#define H5P_DATATYPE_CREATE_DEFAULT (H5OPEN H5P_LST_DATATYPE_CREATE_g)
+#define H5P_DATATYPE_ACCESS_DEFAULT (H5OPEN H5P_LST_DATATYPE_ACCESS_g)
+#define H5P_ATTRIBUTE_CREATE_DEFAULT (H5OPEN H5P_LST_ATTRIBUTE_CREATE_g)
+#define H5P_OBJECT_COPY_DEFAULT (H5OPEN H5P_LST_OBJECT_COPY_g)
+#define H5P_LINK_CREATE_DEFAULT (H5OPEN H5P_LST_LINK_CREATE_g)
+#define H5P_LINK_ACCESS_DEFAULT (H5OPEN H5P_LST_LINK_ACCESS_g)
+
+/* Common creation order flags (for links in groups and attributes on objects) */
+#define H5P_CRT_ORDER_TRACKED 0x0001
+#define H5P_CRT_ORDER_INDEXED 0x0002
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+
+/* Define property list class callback function pointer types */
+typedef herr_t (*H5P_cls_create_func_t)(hid_t prop_id, void *create_data);
+typedef herr_t (*H5P_cls_copy_func_t)(hid_t new_prop_id, hid_t old_prop_id,
+ void *copy_data);
+typedef herr_t (*H5P_cls_close_func_t)(hid_t prop_id, void *close_data);
+
+/* Define property list callback function pointer types */
+typedef herr_t (*H5P_prp_cb1_t)(const char *name, size_t size, void *value);
+typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, void *value);
+typedef H5P_prp_cb1_t H5P_prp_create_func_t;
+typedef H5P_prp_cb2_t H5P_prp_set_func_t;
+typedef H5P_prp_cb2_t H5P_prp_get_func_t;
+typedef H5P_prp_cb2_t H5P_prp_delete_func_t;
+typedef H5P_prp_cb1_t H5P_prp_copy_func_t;
+typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size);
+typedef H5P_prp_cb1_t H5P_prp_close_func_t;
+
+/* Define property list iteration function type */
+typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data);
+
+/* Actual IO mode property */
+typedef enum H5D_mpio_actual_chunk_opt_mode_t {
+ /* The default value, H5D_MPIO_NO_CHUNK_OPTIMIZATION, is used for all I/O
+ * operations that do not use chunk optimizations, including non-collective
+ * I/O and contiguous collective I/O.
+ */
+ H5D_MPIO_NO_CHUNK_OPTIMIZATION = 0,
+ H5D_MPIO_LINK_CHUNK,
+ H5D_MPIO_MULTI_CHUNK
+} H5D_mpio_actual_chunk_opt_mode_t;
+
+typedef enum H5D_mpio_actual_io_mode_t {
+ /* The following four values are conveniently defined as a bit field so that
+ * we can switch from the default to indpendent or collective and then to
+ * mixed without having to check the original value.
+ *
+ * NO_COLLECTIVE means that either collective I/O wasn't requested or that
+ * no I/O took place.
+ *
+ * CHUNK_INDEPENDENT means that collective I/O was requested, but the
+ * chunk optimization scheme chose independent I/O for each chunk.
+ */
+ H5D_MPIO_NO_COLLECTIVE = 0x0,
+ H5D_MPIO_CHUNK_INDEPENDENT = 0x1,
+ H5D_MPIO_CHUNK_COLLECTIVE = 0x2,
+ H5D_MPIO_CHUNK_MIXED = 0x1 | 0x2,
+
+ /* The contiguous case is separate from the bit field. */
+ H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4
+} H5D_mpio_actual_io_mode_t;
+
+/* Broken collective IO property */
+typedef enum H5D_mpio_no_collective_cause_t {
+ H5D_MPIO_COLLECTIVE = 0x00,
+ H5D_MPIO_SET_INDEPENDENT = 0x01,
+ H5D_MPIO_DATATYPE_CONVERSION = 0x02,
+ H5D_MPIO_DATA_TRANSFORMS = 0x04,
+ H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED = 0x08,
+ H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10,
+ H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x20,
+ H5D_MPIO_FILTERS = 0x40
+} H5D_mpio_no_collective_cause_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+/* Property list class IDs */
+/* (Internal to library, do not use! Use macros above) */
+H5_DLLVAR hid_t H5P_CLS_ROOT_g;
+H5_DLLVAR hid_t H5P_CLS_OBJECT_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_XFER_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_MOUNT_g;
+H5_DLLVAR hid_t H5P_CLS_GROUP_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_GROUP_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATATYPE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_DATATYPE_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_STRING_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_ATTRIBUTE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_OBJECT_COPY_g;
+H5_DLLVAR hid_t H5P_CLS_LINK_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_LINK_ACCESS_g;
+
+/* Default roperty list IDs */
+/* (Internal to library, do not use! Use macros above) */
+H5_DLLVAR hid_t H5P_LST_FILE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_FILE_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_XFER_g;
+H5_DLLVAR hid_t H5P_LST_FILE_MOUNT_g;
+H5_DLLVAR hid_t H5P_LST_GROUP_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_GROUP_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATATYPE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_DATATYPE_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_ATTRIBUTE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_OBJECT_COPY_g;
+H5_DLLVAR hid_t H5P_LST_LINK_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_LINK_ACCESS_g;
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+
+/* Generic property list routines */
+H5_DLL hid_t H5Pcreate_class(hid_t parent, const char *name,
+ H5P_cls_create_func_t cls_create, void *create_data,
+ H5P_cls_copy_func_t cls_copy, void *copy_data,
+ H5P_cls_close_func_t cls_close, void *close_data);
+H5_DLL char *H5Pget_class_name(hid_t pclass_id);
+H5_DLL hid_t H5Pcreate(hid_t cls_id);
+H5_DLL herr_t H5Pregister2(hid_t cls_id, const char *name, size_t size,
+ void *def_value, H5P_prp_create_func_t prp_create,
+ H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pinsert2(hid_t plist_id, const char *name, size_t size,
+ void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pset(hid_t plist_id, const char *name, void *value);
+H5_DLL htri_t H5Pexist(hid_t plist_id, const char *name);
+H5_DLL herr_t H5Pget_size(hid_t id, const char *name, size_t *size);
+H5_DLL herr_t H5Pget_nprops(hid_t id, size_t *nprops);
+H5_DLL hid_t H5Pget_class(hid_t plist_id);
+H5_DLL hid_t H5Pget_class_parent(hid_t pclass_id);
+H5_DLL herr_t H5Pget(hid_t plist_id, const char *name, void * value);
+H5_DLL htri_t H5Pequal(hid_t id1, hid_t id2);
+H5_DLL htri_t H5Pisa_class(hid_t plist_id, hid_t pclass_id);
+H5_DLL int H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func,
+ void *iter_data);
+H5_DLL herr_t H5Pcopy_prop(hid_t dst_id, hid_t src_id, const char *name);
+H5_DLL herr_t H5Premove(hid_t plist_id, const char *name);
+H5_DLL herr_t H5Punregister(hid_t pclass_id, const char *name);
+H5_DLL herr_t H5Pclose_class(hid_t plist_id);
+H5_DLL herr_t H5Pclose(hid_t plist_id);
+H5_DLL hid_t H5Pcopy(hid_t plist_id);
+
+/* Object creation property list (OCPL) routines */
+H5_DLL herr_t H5Pset_attr_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense);
+H5_DLL herr_t H5Pget_attr_phase_change(hid_t plist_id, unsigned *max_compact, unsigned *min_dense);
+H5_DLL herr_t H5Pset_attr_creation_order(hid_t plist_id, unsigned crt_order_flags);
+H5_DLL herr_t H5Pget_attr_creation_order(hid_t plist_id, unsigned *crt_order_flags);
+H5_DLL herr_t H5Pset_obj_track_times(hid_t plist_id, hbool_t track_times);
+H5_DLL herr_t H5Pget_obj_track_times(hid_t plist_id, hbool_t *track_times);
+H5_DLL herr_t H5Pmodify_filter(hid_t plist_id, H5Z_filter_t filter,
+ unsigned int flags, size_t cd_nelmts,
+ const unsigned int cd_values[/*cd_nelmts*/]);
+H5_DLL herr_t H5Pset_filter(hid_t plist_id, H5Z_filter_t filter,
+ unsigned int flags, size_t cd_nelmts,
+ const unsigned int c_values[]);
+H5_DLL int H5Pget_nfilters(hid_t plist_id);
+H5_DLL H5Z_filter_t H5Pget_filter2(hid_t plist_id, unsigned filter,
+ unsigned int *flags/*out*/,
+ size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/,
+ size_t namelen, char name[],
+ unsigned *filter_config /*out*/);
+H5_DLL herr_t H5Pget_filter_by_id2(hid_t plist_id, H5Z_filter_t id,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]/*out*/,
+ unsigned *filter_config/*out*/);
+H5_DLL htri_t H5Pall_filters_avail(hid_t plist_id);
+H5_DLL herr_t H5Premove_filter(hid_t plist_id, H5Z_filter_t filter);
+H5_DLL herr_t H5Pset_deflate(hid_t plist_id, unsigned aggression);
+H5_DLL herr_t H5Pset_fletcher32(hid_t plist_id);
+
+/* File creation property list (FCPL) routines */
+H5_DLL herr_t H5Pget_version(hid_t plist_id, unsigned *boot/*out*/,
+ unsigned *freelist/*out*/, unsigned *stab/*out*/,
+ unsigned *shhdr/*out*/);
+H5_DLL herr_t H5Pset_userblock(hid_t plist_id, hsize_t size);
+H5_DLL herr_t H5Pget_userblock(hid_t plist_id, hsize_t *size);
+H5_DLL herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr,
+ size_t sizeof_size);
+H5_DLL herr_t H5Pget_sizes(hid_t plist_id, size_t *sizeof_addr/*out*/,
+ size_t *sizeof_size/*out*/);
+H5_DLL herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk);
+H5_DLL herr_t H5Pget_sym_k(hid_t plist_id, unsigned *ik/*out*/, unsigned *lk/*out*/);
+H5_DLL herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik);
+H5_DLL herr_t H5Pget_istore_k(hid_t plist_id, unsigned *ik/*out*/);
+H5_DLL herr_t H5Pset_shared_mesg_nindexes(hid_t plist_id, unsigned nindexes);
+H5_DLL herr_t H5Pget_shared_mesg_nindexes(hid_t plist_id, unsigned *nindexes);
+H5_DLL herr_t H5Pset_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned mesg_type_flags, unsigned min_mesg_size);
+H5_DLL herr_t H5Pget_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned *mesg_type_flags, unsigned *min_mesg_size);
+H5_DLL herr_t H5Pset_shared_mesg_phase_change(hid_t plist_id, unsigned max_list, unsigned min_btree);
+H5_DLL herr_t H5Pget_shared_mesg_phase_change(hid_t plist_id, unsigned *max_list, unsigned *min_btree);
+
+/* File access property list (FAPL) routines */
+H5_DLL herr_t H5Pset_alignment(hid_t fapl_id, hsize_t threshold,
+ hsize_t alignment);
+H5_DLL herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold/*out*/,
+ hsize_t *alignment/*out*/);
+H5_DLL herr_t H5Pset_driver(hid_t plist_id, hid_t driver_id,
+ const void *driver_info);
+H5_DLL hid_t H5Pget_driver(hid_t plist_id);
+H5_DLL void *H5Pget_driver_info(hid_t plist_id);
+H5_DLL herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset);
+H5_DLL herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset);
+H5_DLL herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type);
+H5_DLL herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type);
+H5_DLL herr_t H5Pset_cache(hid_t plist_id, int mdc_nelmts,
+ size_t rdcc_nslots, size_t rdcc_nbytes,
+ double rdcc_w0);
+H5_DLL herr_t H5Pget_cache(hid_t plist_id,
+ int *mdc_nelmts, /* out */
+ size_t *rdcc_nslots/*out*/,
+ size_t *rdcc_nbytes/*out*/, double *rdcc_w0);
+H5_DLL herr_t H5Pset_mdc_config(hid_t plist_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Pget_mdc_config(hid_t plist_id,
+ H5AC_cache_config_t * config_ptr); /* out */
+H5_DLL herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref);
+H5_DLL herr_t H5Pget_gc_references(hid_t fapl_id, unsigned *gc_ref/*out*/);
+H5_DLL herr_t H5Pset_fclose_degree(hid_t fapl_id, H5F_close_degree_t degree);
+H5_DLL herr_t H5Pget_fclose_degree(hid_t fapl_id, H5F_close_degree_t *degree);
+H5_DLL herr_t H5Pset_meta_block_size(hid_t fapl_id, hsize_t size);
+H5_DLL herr_t H5Pget_meta_block_size(hid_t fapl_id, hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_sieve_buf_size(hid_t fapl_id, size_t size);
+H5_DLL herr_t H5Pget_sieve_buf_size(hid_t fapl_id, size_t *size/*out*/);
+H5_DLL herr_t H5Pset_small_data_block_size(hid_t fapl_id, hsize_t size);
+H5_DLL herr_t H5Pget_small_data_block_size(hid_t fapl_id, hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low,
+ H5F_libver_t high);
+H5_DLL herr_t H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low,
+ H5F_libver_t *high);
+H5_DLL herr_t H5Pset_elink_file_cache_size(hid_t plist_id, unsigned efc_size);
+H5_DLL herr_t H5Pget_elink_file_cache_size(hid_t plist_id, unsigned *efc_size);
+H5_DLL herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len);
+H5_DLL herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr);
+H5_DLL herr_t H5Pset_file_image_callbacks(hid_t fapl_id,
+ H5FD_file_image_callbacks_t *callbacks_ptr);
+H5_DLL herr_t H5Pget_file_image_callbacks(hid_t fapl_id,
+ H5FD_file_image_callbacks_t *callbacks_ptr);
+
+H5_DLL herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size);
+H5_DLL herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size);
+
+/* Dataset creation property list (DCPL) routines */
+H5_DLL herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout);
+H5_DLL H5D_layout_t H5Pget_layout(hid_t plist_id);
+H5_DLL herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[/*ndims*/]);
+H5_DLL int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[]/*out*/);
+H5_DLL herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset,
+ hsize_t size);
+H5_DLL int H5Pget_external_count(hid_t plist_id);
+H5_DLL herr_t H5Pget_external(hid_t plist_id, unsigned idx, size_t name_size,
+ char *name/*out*/, off_t *offset/*out*/,
+ hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_szip(hid_t plist_id, unsigned options_mask, unsigned pixels_per_block);
+H5_DLL herr_t H5Pset_shuffle(hid_t plist_id);
+H5_DLL herr_t H5Pset_nbit(hid_t plist_id);
+H5_DLL herr_t H5Pset_scaleoffset(hid_t plist_id, H5Z_SO_scale_type_t scale_type, int scale_factor);
+H5_DLL herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id,
+ const void *value);
+H5_DLL herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id,
+ void *value/*out*/);
+H5_DLL herr_t H5Pfill_value_defined(hid_t plist, H5D_fill_value_t *status);
+H5_DLL herr_t H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t
+ alloc_time);
+H5_DLL herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t
+ *alloc_time/*out*/);
+H5_DLL herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time);
+H5_DLL herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t
+ *fill_time/*out*/);
+
+/* Dataset access property list (DAPL) routines */
+H5_DLL herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots,
+ size_t rdcc_nbytes, double rdcc_w0);
+H5_DLL herr_t H5Pget_chunk_cache(hid_t dapl_id,
+ size_t *rdcc_nslots/*out*/,
+ size_t *rdcc_nbytes/*out*/,
+ double *rdcc_w0/*out*/);
+
+/* Dataset xfer property list (DXPL) routines */
+H5_DLL herr_t H5Pset_data_transform(hid_t plist_id, const char* expression);
+H5_DLL ssize_t H5Pget_data_transform(hid_t plist_id, char* expression /*out*/, size_t size);
+H5_DLL herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv,
+ void *bkg);
+H5_DLL size_t H5Pget_buffer(hid_t plist_id, void **tconv/*out*/,
+ void **bkg/*out*/);
+H5_DLL herr_t H5Pset_preserve(hid_t plist_id, hbool_t status);
+H5_DLL int H5Pget_preserve(hid_t plist_id);
+H5_DLL herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check);
+H5_DLL H5Z_EDC_t H5Pget_edc_check(hid_t plist_id);
+H5_DLL herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func,
+ void* op_data);
+H5_DLL herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle,
+ double right);
+H5_DLL herr_t H5Pget_btree_ratios(hid_t plist_id, double *left/*out*/,
+ double *middle/*out*/,
+ double *right/*out*/);
+H5_DLL herr_t H5Pset_vlen_mem_manager(hid_t plist_id,
+ H5MM_allocate_t alloc_func,
+ void *alloc_info, H5MM_free_t free_func,
+ void *free_info);
+H5_DLL herr_t H5Pget_vlen_mem_manager(hid_t plist_id,
+ H5MM_allocate_t *alloc_func,
+ void **alloc_info,
+ H5MM_free_t *free_func,
+ void **free_info);
+H5_DLL herr_t H5Pset_hyper_vector_size(hid_t fapl_id, size_t size);
+H5_DLL herr_t H5Pget_hyper_vector_size(hid_t fapl_id, size_t *size/*out*/);
+H5_DLL herr_t H5Pset_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t op, void* operate_data);
+H5_DLL herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, void** operate_data);
+#ifdef H5_HAVE_PARALLEL
+H5_DLL herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode);
+H5_DLL herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode);
+H5_DLL herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause);
+#endif /* H5_HAVE_PARALLEL */
+
+/* Link creation property list (LCPL) routines */
+H5_DLL herr_t H5Pset_create_intermediate_group(hid_t plist_id, unsigned crt_intmd);
+H5_DLL herr_t H5Pget_create_intermediate_group(hid_t plist_id, unsigned *crt_intmd /*out*/);
+
+/* Group creation property list (GCPL) routines */
+H5_DLL herr_t H5Pset_local_heap_size_hint(hid_t plist_id, size_t size_hint);
+H5_DLL herr_t H5Pget_local_heap_size_hint(hid_t plist_id, size_t *size_hint /*out*/);
+H5_DLL herr_t H5Pset_link_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense);
+H5_DLL herr_t H5Pget_link_phase_change(hid_t plist_id, unsigned *max_compact /*out*/, unsigned *min_dense /*out*/);
+H5_DLL herr_t H5Pset_est_link_info(hid_t plist_id, unsigned est_num_entries, unsigned est_name_len);
+H5_DLL herr_t H5Pget_est_link_info(hid_t plist_id, unsigned *est_num_entries /* out */, unsigned *est_name_len /* out */);
+H5_DLL herr_t H5Pset_link_creation_order(hid_t plist_id, unsigned crt_order_flags);
+H5_DLL herr_t H5Pget_link_creation_order(hid_t plist_id, unsigned *crt_order_flags /* out */);
+
+/* String creation property list (STRCPL) routines */
+H5_DLL herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding);
+H5_DLL herr_t H5Pget_char_encoding(hid_t plist_id, H5T_cset_t *encoding /*out*/);
+
+/* Link access property list (LAPL) routines */
+H5_DLL herr_t H5Pset_nlinks(hid_t plist_id, size_t nlinks);
+H5_DLL herr_t H5Pget_nlinks(hid_t plist_id, size_t *nlinks);
+H5_DLL herr_t H5Pset_elink_prefix(hid_t plist_id, const char *prefix);
+H5_DLL ssize_t H5Pget_elink_prefix(hid_t plist_id, char *prefix, size_t size);
+H5_DLL hid_t H5Pget_elink_fapl(hid_t lapl_id);
+H5_DLL herr_t H5Pset_elink_fapl(hid_t lapl_id, hid_t fapl_id);
+H5_DLL herr_t H5Pset_elink_acc_flags(hid_t lapl_id, unsigned flags);
+H5_DLL herr_t H5Pget_elink_acc_flags(hid_t lapl_id, unsigned *flags);
+H5_DLL herr_t H5Pset_elink_cb(hid_t lapl_id, H5L_elink_traverse_t func, void *op_data);
+H5_DLL herr_t H5Pget_elink_cb(hid_t lapl_id, H5L_elink_traverse_t *func, void **op_data);
+
+/* Object copy property list (OCPYPL) routines */
+H5_DLL herr_t H5Pset_copy_object(hid_t plist_id, unsigned crt_intmd);
+H5_DLL herr_t H5Pget_copy_object(hid_t plist_id, unsigned *crt_intmd /*out*/);
+H5_DLL herr_t H5Padd_merge_committed_dtype_path(hid_t plist_id, const char *path);
+H5_DLL herr_t H5Pfree_merge_committed_dtype_paths(hid_t plist_id);
+H5_DLL herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data);
+H5_DLL herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* We renamed the "root" of the property list class hierarchy */
+#define H5P_NO_CLASS H5P_ROOT
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL herr_t H5Pregister1(hid_t cls_id, const char *name, size_t size,
+ void *def_value, H5P_prp_create_func_t prp_create,
+ H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pinsert1(hid_t plist_id, const char *name, size_t size,
+ void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_close_func_t prp_close);
+H5_DLL H5Z_filter_t H5Pget_filter1(hid_t plist_id, unsigned filter,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]);
+H5_DLL herr_t H5Pget_filter_by_id1(hid_t plist_id, H5Z_filter_t id,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]/*out*/);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Ppublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5PredType.h b/Resources/windows-libs/HDF5/include/H5PredType.h
new file mode 100644
index 0000000000000000000000000000000000000000..c929a7043b5e772242e2aedad62e190376377309
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5PredType.h
@@ -0,0 +1,266 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5PredType_H
+#define __H5PredType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+/* This constant is defined for a workaround to eliminate memory leaks due to
+ the library being re-initiated when PredType destructors are invoked. A
+ PredType instant with H5CPP_EXITED as the value of its "id" is constructed
+ before the other PredType objects are created. At exit, when this special
+ PredType object is to be destructed, no HDF5 library function will be called
+ and the library will be terminated. -BMR, Mar 30, 2012 */
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+#define H5CPP_EXITED -3 // -3 is less likely to be used elsewhere
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+/*! \class PredType
+ \brief Class PredType holds the definition of all the HDF5 predefined
+ datatypes.
+
+ These types can only be made copy of, not created by H5Tcreate or
+ closed by H5Tclose. They are treated as constants.
+*/
+class H5_DLLCPP PredType : public AtomType {
+ public:
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("PredType"); }
+
+ // Makes a copy of the predefined type and stores the new
+ // id in the left hand side object.
+ PredType& operator=( const PredType& rhs );
+
+ // Copy constructor - makes copy of the original object
+ PredType( const PredType& original );
+
+ // Noop destructor
+ virtual ~PredType();
+
+ // Declaration of predefined types; their definition is in H5PredType.cpp
+ static const PredType STD_I8BE;
+ static const PredType STD_I8LE;
+ static const PredType STD_I16BE;
+ static const PredType STD_I16LE;
+ static const PredType STD_I32BE;
+ static const PredType STD_I32LE;
+ static const PredType STD_I64BE;
+ static const PredType STD_I64LE;
+ static const PredType STD_U8BE;
+ static const PredType STD_U8LE;
+ static const PredType STD_U16BE;
+ static const PredType STD_U16LE;
+ static const PredType STD_U32BE;
+ static const PredType STD_U32LE;
+ static const PredType STD_U64BE;
+ static const PredType STD_U64LE;
+ static const PredType STD_B8BE;
+ static const PredType STD_B8LE;
+ static const PredType STD_B16BE;
+ static const PredType STD_B16LE;
+ static const PredType STD_B32BE;
+ static const PredType STD_B32LE;
+ static const PredType STD_B64BE;
+ static const PredType STD_B64LE;
+ static const PredType STD_REF_OBJ;
+ static const PredType STD_REF_DSETREG;
+
+ static const PredType C_S1;
+ static const PredType FORTRAN_S1;
+
+ static const PredType IEEE_F32BE;
+ static const PredType IEEE_F32LE;
+ static const PredType IEEE_F64BE;
+ static const PredType IEEE_F64LE;
+
+ static const PredType UNIX_D32BE;
+ static const PredType UNIX_D32LE;
+ static const PredType UNIX_D64BE;
+ static const PredType UNIX_D64LE;
+
+ static const PredType INTEL_I8;
+ static const PredType INTEL_I16;
+ static const PredType INTEL_I32;
+ static const PredType INTEL_I64;
+ static const PredType INTEL_U8;
+ static const PredType INTEL_U16;
+ static const PredType INTEL_U32;
+ static const PredType INTEL_U64;
+ static const PredType INTEL_B8;
+ static const PredType INTEL_B16;
+ static const PredType INTEL_B32;
+ static const PredType INTEL_B64;
+ static const PredType INTEL_F32;
+ static const PredType INTEL_F64;
+
+ static const PredType ALPHA_I8;
+ static const PredType ALPHA_I16;
+ static const PredType ALPHA_I32;
+ static const PredType ALPHA_I64;
+ static const PredType ALPHA_U8;
+ static const PredType ALPHA_U16;
+ static const PredType ALPHA_U32;
+ static const PredType ALPHA_U64;
+ static const PredType ALPHA_B8;
+ static const PredType ALPHA_B16;
+ static const PredType ALPHA_B32;
+ static const PredType ALPHA_B64;
+ static const PredType ALPHA_F32;
+ static const PredType ALPHA_F64;
+
+ static const PredType MIPS_I8;
+ static const PredType MIPS_I16;
+ static const PredType MIPS_I32;
+ static const PredType MIPS_I64;
+ static const PredType MIPS_U8;
+ static const PredType MIPS_U16;
+ static const PredType MIPS_U32;
+ static const PredType MIPS_U64;
+ static const PredType MIPS_B8;
+ static const PredType MIPS_B16;
+ static const PredType MIPS_B32;
+ static const PredType MIPS_B64;
+ static const PredType MIPS_F32;
+ static const PredType MIPS_F64;
+
+ static const PredType NATIVE_CHAR;
+ static const PredType NATIVE_SCHAR;
+ static const PredType NATIVE_UCHAR;
+ static const PredType NATIVE_SHORT;
+ static const PredType NATIVE_USHORT;
+ static const PredType NATIVE_INT;
+ static const PredType NATIVE_UINT;
+ static const PredType NATIVE_LONG;
+ static const PredType NATIVE_ULONG;
+ static const PredType NATIVE_LLONG;
+ static const PredType NATIVE_ULLONG;
+ static const PredType NATIVE_FLOAT;
+ static const PredType NATIVE_DOUBLE;
+ static const PredType NATIVE_LDOUBLE;
+ static const PredType NATIVE_B8;
+ static const PredType NATIVE_B16;
+ static const PredType NATIVE_B32;
+ static const PredType NATIVE_B64;
+ static const PredType NATIVE_OPAQUE;
+ static const PredType NATIVE_HSIZE;
+ static const PredType NATIVE_HSSIZE;
+ static const PredType NATIVE_HERR;
+ static const PredType NATIVE_HBOOL;
+
+ static const PredType NATIVE_INT8;
+ static const PredType NATIVE_UINT8;
+ static const PredType NATIVE_INT16;
+ static const PredType NATIVE_UINT16;
+ static const PredType NATIVE_INT32;
+ static const PredType NATIVE_UINT32;
+ static const PredType NATIVE_INT64;
+ static const PredType NATIVE_UINT64;
+
+// LEAST types
+#if H5_SIZEOF_INT_LEAST8_T != 0
+ static const PredType NATIVE_INT_LEAST8;
+#endif /* H5_SIZEOF_INT_LEAST8_T */
+#if H5_SIZEOF_UINT_LEAST8_T != 0
+ static const PredType NATIVE_UINT_LEAST8;
+#endif /* H5_SIZEOF_UINT_LEAST8_T */
+
+#if H5_SIZEOF_INT_LEAST16_T != 0
+ static const PredType NATIVE_INT_LEAST16;
+#endif /* H5_SIZEOF_INT_LEAST16_T */
+#if H5_SIZEOF_UINT_LEAST16_T != 0
+ static const PredType NATIVE_UINT_LEAST16;
+#endif /* H5_SIZEOF_UINT_LEAST16_T */
+
+#if H5_SIZEOF_INT_LEAST32_T != 0
+ static const PredType NATIVE_INT_LEAST32;
+#endif /* H5_SIZEOF_INT_LEAST32_T */
+#if H5_SIZEOF_UINT_LEAST32_T != 0
+ static const PredType NATIVE_UINT_LEAST32;
+#endif /* H5_SIZEOF_UINT_LEAST32_T */
+
+#if H5_SIZEOF_INT_LEAST64_T != 0
+ static const PredType NATIVE_INT_LEAST64;
+#endif /* H5_SIZEOF_INT_LEAST64_T */
+#if H5_SIZEOF_UINT_LEAST64_T != 0
+ static const PredType NATIVE_UINT_LEAST64;
+#endif /* H5_SIZEOF_UINT_LEAST64_T */
+
+// FAST types
+#if H5_SIZEOF_INT_FAST8_T != 0
+ static const PredType NATIVE_INT_FAST8;
+#endif /* H5_SIZEOF_INT_FAST8_T */
+#if H5_SIZEOF_UINT_FAST8_T != 0
+ static const PredType NATIVE_UINT_FAST8;
+#endif /* H5_SIZEOF_UINT_FAST8_T */
+
+#if H5_SIZEOF_INT_FAST16_T != 0
+ static const PredType NATIVE_INT_FAST16;
+#endif /* H5_SIZEOF_INT_FAST16_T */
+#if H5_SIZEOF_UINT_FAST16_T != 0
+ static const PredType NATIVE_UINT_FAST16;
+#endif /* H5_SIZEOF_UINT_FAST16_T */
+
+#if H5_SIZEOF_INT_FAST32_T != 0
+ static const PredType NATIVE_INT_FAST32;
+#endif /* H5_SIZEOF_INT_FAST32_T */
+#if H5_SIZEOF_UINT_FAST32_T != 0
+ static const PredType NATIVE_UINT_FAST32;
+#endif /* H5_SIZEOF_UINT_FAST32_T */
+
+#if H5_SIZEOF_INT_FAST64_T != 0
+ static const PredType NATIVE_INT_FAST64;
+#endif /* H5_SIZEOF_INT_FAST64_T */
+#if H5_SIZEOF_UINT_FAST64_T != 0
+ static const PredType NATIVE_UINT_FAST64;
+#endif /* H5_SIZEOF_UINT_FAST64_T */
+
+ /*! \brief This dummy function do not inherit from DataType - it will
+ throw a DataTypeIException if invoked.
+ */
+ void commit(H5Location& loc, const H5std_string& name );
+ /*! \brief This dummy function do not inherit from DataType - it will
+ throw a DataTypeIException if invoked.
+ */
+ void commit(H5Location& loc, const char* name );
+ /*! \brief This dummy function do not inherit from DataType - it will
+ throw a DataTypeIException if invoked.
+ */
+ bool committed();
+
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ private:
+ // Added this to work around the atexit/global destructor problem.
+ // It'll help to terminate the library after other PredType instances
+ // are closed. -BMR, Mar 30, 2012
+ static const PredType AtExit;
+
+ protected:
+ // Default constructor
+ PredType();
+
+ // Creates a pre-defined type using an HDF5 pre-defined constant
+ PredType( const hid_t predtype_id ); // used by the library only
+
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5PredType_H
diff --git a/Resources/windows-libs/HDF5/include/H5PropList.h b/Resources/windows-libs/HDF5/include/H5PropList.h
new file mode 100644
index 0000000000000000000000000000000000000000..f26201dc4b67ecaa8202c7e2472b03fd33091c62
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5PropList.h
@@ -0,0 +1,125 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5PropList_H
+#define __H5PropList_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class PropList provides operations for generic property lists.
+class H5_DLLCPP PropList : public IdComponent {
+ public:
+ // Default property list
+ static const PropList DEFAULT;
+
+ // Creates a property list of a given type or creates a copy of an
+ // existing property list giving the property list id.
+ PropList(const hid_t plist_id);
+
+ // Make a copy of the given property list using assignment statement
+ PropList& operator=( const PropList& rhs );
+
+ // Compares this property list or class against the given list or class.
+ bool operator==(const PropList& rhs) const;
+
+ // Close this property list.
+ virtual void close();
+
+ // Close a property list class.
+ void closeClass() const;
+
+ // Makes a copy of the given property list.
+ void copy( const PropList& like_plist );
+
+ // Copies a property from this property list or class to another
+ void copyProp( PropList& dest, const char* name) const;
+ void copyProp( PropList& dest, const H5std_string& name) const;
+
+ // Copies a property from one property list or property class to another
+ void copyProp( PropList& dest, PropList& src, const char* name) const;
+ void copyProp( PropList& dest, PropList& src, const H5std_string& name) const;
+
+ // Gets the class of this property list, i.e. H5P_FILE_CREATE,
+ // H5P_FILE_ACCESS, ...
+ hid_t getClass() const;
+
+ // Return the name of a generic property list class.
+ H5std_string getClassName() const;
+
+ // Returns the parent class of a generic property class.
+ PropList getClassParent() const;
+
+ // Returns the number of properties in this property list or class.
+ size_t getNumProps() const;
+
+ // Query the value of a property in a property list.
+ void getProperty(const char* name, void* value) const;
+ void getProperty(const H5std_string& name, void* value) const;
+ H5std_string getProperty(const char* name) const;
+ H5std_string getProperty(const H5std_string& name) const;
+
+ // Set a property's value in a property list.
+ void setProperty(const char* name, void* value) const;
+ void setProperty(const char* name, const char* charptr) const;
+ void setProperty(const char* name, H5std_string& strg) const;
+ void setProperty(const H5std_string& name, void* value) const;
+ void setProperty(const H5std_string& name, H5std_string& strg) const;
+
+ // Query the size of a property in a property list or class.
+ size_t getPropSize(const char *name) const;
+ size_t getPropSize(const H5std_string& name) const;
+
+ // Determines whether a property list is a certain class.
+ bool isAClass(const PropList& prop_class) const;
+
+ /// Query the existance of a property in a property object.
+ bool propExist(const char* name) const;
+ bool propExist(const H5std_string& name) const;
+
+ // Removes a property from a property list.
+ void removeProp(const char *name) const;
+ void removeProp(const H5std_string& name) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("PropList"); }
+
+ // Default constructor: creates a stub PropList object.
+ PropList();
+
+ // Copy constructor: creates a copy of a PropList object.
+ PropList(const PropList& original);
+
+ // Gets the property list id.
+ virtual hid_t getId() const;
+
+ // Destructor: properly terminates access to this property list.
+ virtual ~PropList();
+
+ protected:
+#ifndef DOXYGEN_SHOULD_SKIP_THIS
+ hid_t id; // HDF5 property list id
+
+ // Sets the property list id.
+ virtual void p_setId(const hid_t new_id);
+#endif // DOXYGEN_SHOULD_SKIP_THIS
+};
+
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5PropList_H
diff --git a/Resources/windows-libs/HDF5/include/H5Rpkg.h b/Resources/windows-libs/HDF5/include/H5Rpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..2ff1c2c1a9883fd8d0eb4b85922ec8ef0c2b423b
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Rpkg.h
@@ -0,0 +1,64 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@hdfgroup.org>
+ * Thursday, September 13, 2007
+ *
+ * Purpose: This file contains declarations which are visible
+ * only within the H5R package. Source files outside the
+ * H5R package should include H5Rprivate.h instead.
+ */
+#ifndef H5R_PACKAGE
+#error "Do not include this file outside the H5R package!"
+#endif
+
+#ifndef _H5Rpkg_H
+#define _H5Rpkg_H
+
+/* Get package's private header */
+#include "H5Rprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5Fprivate.h" /* File access */
+
+/**************************/
+/* Package Private Macros */
+/**************************/
+
+
+/****************************/
+/* Package Private Typedefs */
+/****************************/
+
+
+/*****************************/
+/* Package Private Variables */
+/*****************************/
+
+
+/******************************/
+/* Package Private Prototypes */
+/******************************/
+
+/* General functions */
+H5_DLL herr_t H5R_init(void);
+H5_DLL herr_t H5R__term_deprec_interface(void);
+H5_DLL herr_t H5R_get_obj_type(H5F_t *file, hid_t dxpl_id, H5R_type_t ref_type,
+ const void *_ref, H5O_type_t *obj_type);
+
+
+#endif /* _H5Rpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Rpublic.h b/Resources/windows-libs/HDF5/include/H5Rpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..04d319bebbbe7a5d5cc644d081c95d867063a886
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Rpublic.h
@@ -0,0 +1,92 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5S module.
+ */
+#ifndef _H5Rpublic_H
+#define _H5Rpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Gpublic.h"
+#include "H5Ipublic.h"
+
+/*
+ * Reference types allowed.
+ */
+typedef enum {
+ H5R_BADTYPE = (-1), /*invalid Reference Type */
+ H5R_OBJECT, /*Object reference */
+ H5R_DATASET_REGION, /*Dataset Region Reference */
+ H5R_MAXTYPE /*highest type (Invalid as true type) */
+} H5R_type_t;
+
+/* Note! Be careful with the sizes of the references because they should really
+ * depend on the run-time values in the file. Unfortunately, the arrays need
+ * to be defined at compile-time, so we have to go with the worst case sizes for
+ * them. -QAK
+ */
+#define H5R_OBJ_REF_BUF_SIZE sizeof(haddr_t)
+/* Object reference structure for user's code */
+typedef haddr_t hobj_ref_t; /* Needs to be large enough to store largest haddr_t in a worst case machine (ie. 8 bytes currently) */
+
+#define H5R_DSET_REG_REF_BUF_SIZE (sizeof(haddr_t)+4)
+/* 4 is used instead of sizeof(int) to permit portability between
+ the Crays and other machines (the heap ID is always encoded as an int32 anyway)
+*/
+/* Dataset Region reference structure for user's code */
+typedef unsigned char hdset_reg_ref_t[H5R_DSET_REG_REF_BUF_SIZE];/* Buffer to store heap ID and index */
+/* Needs to be large enough to store largest haddr_t in a worst case machine (ie. 8 bytes currently) plus an int */
+
+/* Publicly visible data structures */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5R.c */
+H5_DLL herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name,
+ H5R_type_t ref_type, hid_t space_id);
+H5_DLL hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, const void *ref);
+H5_DLL hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref);
+H5_DLL herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *_ref,
+ H5O_type_t *obj_type);
+H5_DLL ssize_t H5Rget_name(hid_t loc_id, H5R_type_t ref_type, const void *ref,
+ char *name/*out*/, size_t size);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *_ref);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5Rpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5SMpkg.h b/Resources/windows-libs/HDF5/include/H5SMpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..68dc484bf18ec44d024aa22ccb41c89d4f877c6f
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5SMpkg.h
@@ -0,0 +1,292 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: James Laird <jlaird@ncsa.uiuc.edu>
+ * Thursday, March 30, 2006
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5SM shared object header messages package. Source files
+ * outside the H5SM package should include H5SMprivate.h instead.
+ */
+#ifndef H5SM_PACKAGE
+#error "Do not include this file outside the H5SM package!"
+#endif
+
+#ifndef _H5SMpkg_H
+#define _H5SMpkg_H
+
+/* Get package's private header */
+#include "H5SMprivate.h" /* Shared Object Header Messages */
+
+/* Other private headers needed by this file */
+#include "H5ACprivate.h" /* Metadata Cache */
+#include "H5B2private.h" /* B-trees */
+#include "H5HFprivate.h" /* Fractal heaps */
+
+
+/****************************/
+/* Package Macros */
+/****************************/
+
+/* Size of checksum information (on disk) */
+#define H5SM_SIZEOF_CHECKSUM 4
+
+#define H5SM_HEAP_LOC_SIZE ( \
+ (unsigned)4 /* Reference count */ \
+ + sizeof(H5O_fheap_id_t) /* size of heap ID on disk */ \
+ )
+
+#define H5SM_OH_LOC_SIZE(f) ( \
+ (unsigned)1 /* reserved (possible flags?) */ \
+ + (unsigned)1 /* message type ID */ \
+ + (unsigned)2 /* creation index of message in OH */ \
+ + H5F_SIZEOF_ADDR(f) /* address of OH */ \
+ )
+
+#define H5SM_SOHM_ENTRY_SIZE(f) ( \
+ (unsigned)1 /* Message location */ \
+ + (unsigned)4 /* Hash value */ \
+ + MAX(H5SM_HEAP_LOC_SIZE, H5SM_OH_LOC_SIZE(f)) /* Entry */ \
+ )
+
+#define H5SM_INDEX_HEADER_SIZE(f) ( \
+ (unsigned)1 /* Whether index is a list or B-tree */ \
+ + (unsigned)1 /* Version of index format */ \
+ + (unsigned)2 /* Type of messages stored in the index */ \
+ + (unsigned)4 /* Minimum size of messages to share */ \
+ + (unsigned)(3 * 2) /* B-tree cutoff, list cutoff, # of shared messages */ \
+ + H5F_SIZEOF_ADDR(f) /* Location of list or B-tree */ \
+ + H5F_SIZEOF_ADDR(f) /* Address of heap */ \
+ )
+
+/* Format overhead for all SOHM tree metadata in the file */
+#define H5SM_METADATA_PREFIX_SIZE ( \
+ H5_SIZEOF_MAGIC /* Signature */ \
+ + H5SM_SIZEOF_CHECKSUM /* Checksum */ \
+ )
+
+#define H5SM_TABLE_SIZE(f) ( \
+ /* General metadata fields */ \
+ H5SM_METADATA_PREFIX_SIZE \
+ \
+ /* Indices */ \
+ + (H5F_SOHM_NINDEXES(f) * H5SM_INDEX_HEADER_SIZE(f)) \
+ )
+
+#define H5SM_LIST_SIZE(f, num_mesg) ( \
+ /* General metadata fields */ \
+ H5SM_METADATA_PREFIX_SIZE \
+ \
+ /* Message entries */ \
+ + (H5SM_SOHM_ENTRY_SIZE(f) * num_mesg) \
+ )
+
+#define H5SM_B2_NODE_SIZE 512
+#define H5SM_B2_SPLIT_PERCENT 100
+#define H5SM_B2_MERGE_PERCENT 40
+
+#define H5SM_LIST_VERSION 0 /* Verion of Shared Object Header Message List Indexes */
+
+/****************************/
+/* Package Typedefs */
+/****************************/
+
+/* There are a number of Shared Object Header Message-specific structs here.
+ *
+ * The H5SM_master_table_t is pointed to by the file superblock. Since a file
+ * can have more than one SOHM index, this table collects all the indexes into
+ * one place. It holds an array of H5SM_index_header_t structs.
+ *
+ * An H5SM_index_header_t is actually the for a given index. It holds
+ * the number of messages in the index, the types of messages in the index,
+ * etc. It also records whether the index is a list or a b-tree, and has
+ * the address of the list or b-tree.
+ *
+ * If the index is a list, the address in the index header should be given
+ * to the cache, which can load it into a H5SM_list_t struct. This is mostly
+ * just a header for the cache information; it contains a pointer back to
+ * the index header and an unsorted array of messages.
+ *
+ * These messages are H5SM_sohm_t structs. They hold the actual SOHM's
+ * address, hash value, and refcount.
+ *
+ * If the index is a b-tree, the H5SM_index_header_t struct holds the address
+ * of the b-tree instead of the address of a H5SM_list_t. The B-tree's nodes
+ * are still 'H5SM_sohm_t's.
+ *
+ * H5SM_mesg_key_t structs are used to search lists and B-trees for a certain
+ * message. They correspond to a message that hasn't yet been written to
+ * disk.
+ */
+
+/* Where a message is stored */
+typedef enum {
+ H5SM_NO_LOC = -1,
+ H5SM_IN_HEAP = 0, /* Message is stored in the heap */
+ H5SM_IN_OH /* Message is stored in an object header */
+} H5SM_storage_loc_t;
+
+/* Typedef for a record's location if it's stored in the heap */
+typedef struct {
+ hsize_t ref_count; /* Number of times this message is used in the file */
+ H5O_fheap_id_t fheap_id; /* ID of the OHM in the fractal heap */
+} H5SM_heap_loc_t;
+
+/* Typedef for a SOHM index node */
+typedef struct {
+ H5SM_storage_loc_t location; /* Type of message location */
+ uint32_t hash; /* Hash value for encoded OHM */
+ unsigned msg_type_id; /* Message's type ID */
+ union {
+ H5O_mesg_loc_t mesg_loc; /* Location of message in object header */
+ H5SM_heap_loc_t heap_loc; /* Heap ID for message in SOHM heap */
+ } u;
+} H5SM_sohm_t;
+
+/* Types of message indices */
+typedef enum {
+ H5SM_BADTYPE = -1,
+ H5SM_LIST, /* Index is an unsorted list */
+ H5SM_BTREE /* Index is a sorted B-tree */
+} H5SM_index_type_t;
+
+/* Typedef for a SOHM index header */
+typedef struct {
+/* Stored */
+ unsigned mesg_types; /* Bit flag vector of message types */
+ size_t min_mesg_size; /* number of messages being tracked */
+ size_t list_max; /* >= this many messages, index with a B-tree */
+ size_t btree_min; /* <= this many messages, index with a list again */
+ size_t num_messages; /* number of messages being tracked */
+ H5SM_index_type_t index_type; /* Is the index a list or a B-tree? */
+ haddr_t index_addr; /* Address of the actual index (list or B-tree) */
+ haddr_t heap_addr; /* Address of the fheap used to store shared messages */
+
+/* Not stored */
+ size_t list_size; /* Size of list index on disk */
+} H5SM_index_header_t;
+
+/* Typedef for a SOHM list */
+typedef struct {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ H5SM_index_header_t *header; /* Pointer to the corresponding index header */
+ H5SM_sohm_t *messages; /* Actual list, stored as an array */
+} H5SM_list_t;
+
+/* Typedef for shared object header message master table */
+struct H5SM_master_table_t {
+ /* Information for H5AC cache functions, _must_ be first field in structure */
+ H5AC_info_t cache_info;
+
+ size_t table_size; /* Size of table on disk */
+ unsigned num_indexes; /* Number of indexes */
+ H5SM_index_header_t *indexes; /* Array of num_indexes indexes */
+};
+
+/* Typedef for searching an index (list or B-tree) */
+typedef struct {
+ H5F_t *file; /* File in which sharing is happening */
+ hid_t dxpl_id; /* DXPL for sharing messages in heap */
+ H5HF_t *fheap; /* The heap for this message type, open. */
+ void *encoding; /* The message encoded, or NULL */
+ size_t encoding_size; /* Size of the encoding, or 0 */
+ H5SM_sohm_t message; /* The message to find/insert.
+ * If the message doesn't yet have a
+ * heap ID, the heap ID will be 0. */
+} H5SM_mesg_key_t;
+
+/*
+ * Data exchange structure to pass through the fractal heap layer for the
+ * H5HF_op function when computing a hash value for a message.
+ */
+typedef struct {
+ /* downward (internal) */
+ unsigned type_id; /* Message type */
+
+ /* upward */
+ uint32_t hash; /* Hash value */
+} H5SM_fh_ud_gh_t;
+
+/* Typedef to increment a reference count in the B-tree */
+typedef struct {
+ H5SM_mesg_key_t *key; /* IN: key for message being incremented */
+ H5O_fheap_id_t fheap_id; /* OUT: fheap ID of record */
+ hid_t dxpl_id;
+} H5SM_incr_ref_opdata;
+
+/* v2 B-tree client callback context */
+typedef struct H5SM_bt2_ctx_t {
+ uint8_t sizeof_addr; /* Size of file addresses */
+} H5SM_bt2_ctx_t;
+
+/* Callback info for loading a shared message table index into the cache */
+typedef struct H5SM_table_cache_ud_t {
+ H5F_t *f; /* File that shared message index stored as a table is in */
+} H5SM_table_cache_ud_t;
+
+/* Callback info for loading a shared message list index into the cache */
+typedef struct H5SM_list_cache_ud_t {
+ H5F_t *f; /* File that shared message index stored as a table is in */
+ H5SM_index_header_t *header; /* Index header for this list */
+} H5SM_list_cache_ud_t;
+
+
+/****************************/
+/* Package Variables */
+/****************************/
+
+/* Declare free lists to manage H5SM structs */
+H5FL_EXTERN(H5SM_master_table_t);
+H5FL_ARR_EXTERN(H5SM_index_header_t);
+H5FL_EXTERN(H5SM_list_t);
+H5FL_ARR_EXTERN(H5SM_sohm_t);
+
+H5_DLLVAR const H5AC_class_t H5AC_SOHM_TABLE[1];
+H5_DLLVAR const H5AC_class_t H5AC_SOHM_LIST[1];
+H5_DLLVAR const H5B2_class_t H5SM_INDEX[1];
+
+/****************************/
+/* Package Prototypes */
+/****************************/
+
+/* General routines */
+H5_DLL ssize_t H5SM_get_index(const H5SM_master_table_t *table, unsigned type_id);
+
+/* Encode and decode routines, used for B-tree and cache encoding/decoding */
+H5_DLL herr_t H5SM_message_compare(const void *rec1, const void *rec2);
+H5_DLL herr_t H5SM_message_encode(uint8_t *raw, const void *native, void *ctx);
+H5_DLL herr_t H5SM_message_decode(const uint8_t *raw, void *native, void *ctx);
+
+/* H5B2_remove_t callback to add messages to a list index */
+H5_DLL herr_t H5SM_bt2_convert_to_list_op(const void * record, void *op_data);
+
+/* Fractal heap 'op' callback to compute hash value for message "in place" */
+H5_DLL herr_t H5SM_get_hash_fh_cb(const void *obj, size_t obj_len, void *_udata);
+
+/* Routines to release data structures */
+herr_t H5SM_table_free(H5SM_master_table_t *table);
+herr_t H5SM_list_free(H5SM_list_t *list);
+
+/* Testing functions */
+#ifdef H5SM_TESTING
+H5_DLL herr_t H5SM_get_mesg_count_test(H5F_t *f, hid_t dxpl_id, unsigned type_id,
+ size_t *mesg_count);
+#endif /* H5SM_TESTING */
+
+#endif /* _H5SMpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Spkg.h b/Resources/windows-libs/HDF5/include/H5Spkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..0a9df6971fc217fbe85b7697d96a6b249ada61b1
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Spkg.h
@@ -0,0 +1,260 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Thursday, September 28, 2000
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5S package. Source files outside the H5S package should
+ * include H5Sprivate.h instead.
+ */
+#ifndef H5S_PACKAGE
+#error "Do not include this file outside the H5S package!"
+#endif
+
+#ifndef _H5Spkg_H
+#define _H5Spkg_H
+
+#include "H5Sprivate.h"
+
+/* Flags to indicate special dataspace features are active */
+#define H5S_VALID_MAX 0x01
+#define H5S_VALID_PERM 0x02
+
+
+/* Initial version of the dataspace information */
+#define H5O_SDSPACE_VERSION_1 1
+
+/* This version adds support for "null" dataspaces, encodes the type of the
+ * dataspace in the message and eliminated the rest of the "reserved"
+ * bytes.
+ */
+#define H5O_SDSPACE_VERSION_2 2
+
+/* The latest version of the format. Look through the 'encode'
+ * and 'size' callbacks for places to change when updating this. */
+#define H5O_SDSPACE_VERSION_LATEST H5O_SDSPACE_VERSION_2
+
+
+/*
+ * Dataspace extent information
+ */
+/* Extent container */
+struct H5S_extent_t {
+ H5O_shared_t sh_loc; /* Shared message info (must be first) */
+
+ H5S_class_t type; /* Type of extent */
+ unsigned version; /* Version of object header message to encode this object with */
+ hsize_t nelem; /* Number of elements in extent */
+
+ unsigned rank; /* Number of dimensions */
+ hsize_t *size; /* Current size of the dimensions */
+ hsize_t *max; /* Maximum size of the dimensions */
+};
+
+/*
+ * Dataspace selection information
+ */
+/* Node in point selection list (typedef'd in H5Sprivate.h) */
+struct H5S_pnt_node_t {
+ hsize_t *pnt; /* Pointer to a selected point */
+ struct H5S_pnt_node_t *next; /* pointer to next point in list */
+};
+
+/* Information about point selection list */
+typedef struct {
+ H5S_pnt_node_t *head; /* Pointer to head of point list */
+} H5S_pnt_list_t;
+
+/* Information about new-style hyperslab spans */
+
+/* Information a particular hyperslab span */
+struct H5S_hyper_span_t {
+ hsize_t low, high; /* Low & high bounds of span */
+ hsize_t nelem; /* Number of elements in span (only needed during I/O) */
+ hsize_t pstride; /* Pseudo-stride from start of previous span (only used during I/O) */
+ struct H5S_hyper_span_info_t *down; /* Pointer to list of spans in next dimension down */
+ struct H5S_hyper_span_t *next; /* Pointer to next span in list */
+};
+
+/* Information about a list of hyperslab spans */
+struct H5S_hyper_span_info_t {
+ unsigned count; /* Ref. count of number of spans which share this span */
+ struct H5S_hyper_span_info_t *scratch; /* Scratch pointer
+ * (used during copies, as mark
+ * during precomputes for I/O &
+ * to point to the last span in a
+ * list during single element adds)
+ */
+ struct H5S_hyper_span_t *head; /* Pointer to list of spans in next dimension down */
+};
+
+/* Information about new-style hyperslab selection */
+typedef struct {
+ hbool_t diminfo_valid; /* Whether the dataset has valid diminfo */
+ H5S_hyper_dim_t opt_diminfo[H5S_MAX_RANK]; /* per-dim selection info */
+ H5S_hyper_dim_t app_diminfo[H5S_MAX_RANK]; /* per-dim selection info */
+ /* 'opt_diminfo' points to a [potentially] optimized version of the user's
+ * hyperslab information. 'app_diminfo' points to the actual parameters
+ * that the application used for setting the hyperslab selection. These
+ * are only used for re-gurgitating the original values used to set the
+ * hyperslab to the application when it queries the hyperslab selection
+ * information. */
+ H5S_hyper_span_info_t *span_lst; /* List of hyperslab span information */
+} H5S_hyper_sel_t;
+
+/* Selection information methods */
+/* Method to copy a selection */
+typedef herr_t (*H5S_sel_copy_func_t)(H5S_t *dst, const H5S_t *src, hbool_t share_selection);
+/* Method to retrieve a list of offset/length sequences for selection */
+typedef herr_t (*H5S_sel_get_seq_list_func_t)(const H5S_t *space, unsigned flags,
+ H5S_sel_iter_t *iter, size_t maxseq, size_t maxbytes,
+ size_t *nseq, size_t *nbytes, hsize_t *off, size_t *len);
+/* Method to release current selection */
+typedef herr_t (*H5S_sel_release_func_t)(H5S_t *space);
+/* Method to determine if current selection is valid for dataspace */
+typedef htri_t (*H5S_sel_is_valid_func_t)(const H5S_t *space);
+/* Method to determine number of bytes required to store current selection */
+typedef hssize_t (*H5S_sel_serial_size_func_t)(const H5S_t *space);
+/* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */
+typedef herr_t (*H5S_sel_serialize_func_t)(const H5S_t *space, uint8_t *buf);
+/* Method to store create selection from "serialized" form (a byte sequence suitable for storing on disk) */
+typedef herr_t (*H5S_sel_deserialize_func_t)(H5S_t *space, const uint8_t *buf);
+/* Method to determine smallest n-D bounding box containing the current selection */
+typedef herr_t (*H5S_sel_bounds_func_t)(const H5S_t *space, hsize_t *start, hsize_t *end);
+/* Method to determine linear offset of initial element in selection within dataspace */
+typedef herr_t (*H5S_sel_offset_func_t)(const H5S_t *space, hsize_t *offset);
+/* Method to determine if current selection is contiguous */
+typedef htri_t (*H5S_sel_is_contiguous_func_t)(const H5S_t *space);
+/* Method to determine if current selection is a single block */
+typedef htri_t (*H5S_sel_is_single_func_t)(const H5S_t *space);
+/* Method to determine if current selection is "regular" */
+typedef htri_t (*H5S_sel_is_regular_func_t)(const H5S_t *space);
+/* Method to adjust a selection by an offset */
+typedef herr_t (*H5S_sel_adjust_u_func_t)(H5S_t *space, const hsize_t *offset);
+/* Method to construct single element projection onto scalar dataspace */
+typedef herr_t (*H5S_sel_project_scalar)(const H5S_t *space, hsize_t *offset);
+/* Method to construct selection projection onto/into simple dataspace */
+typedef herr_t (*H5S_sel_project_simple)(const H5S_t *space, H5S_t *new_space, hsize_t *offset);
+/* Method to initialize iterator for current selection */
+typedef herr_t (*H5S_sel_iter_init_func_t)(H5S_sel_iter_t *sel_iter, const H5S_t *space);
+
+/* Selection class information */
+typedef struct {
+ H5S_sel_type type; /* Type of selection (all, none, points or hyperslab) */
+
+ /* Methods */
+ H5S_sel_copy_func_t copy; /* Method to make a copy of a selection */
+ H5S_sel_get_seq_list_func_t get_seq_list; /* Method to retrieve a list of offset/length sequences for selection */
+ H5S_sel_release_func_t release; /* Method to release current selection */
+ H5S_sel_is_valid_func_t is_valid; /* Method to determine if current selection is valid for dataspace */
+ H5S_sel_serial_size_func_t serial_size; /* Method to determine number of bytes required to store current selection */
+ H5S_sel_serialize_func_t serialize; /* Method to store current selection in "serialized" form (a byte sequence suitable for storing on disk) */
+ H5S_sel_deserialize_func_t deserialize; /* Method to store create selection from "serialized" form (a byte sequence suitable for storing on disk) */
+ H5S_sel_bounds_func_t bounds; /* Method to determine to smallest n-D bounding box containing the current selection */
+ H5S_sel_offset_func_t offset; /* Method to determine linear offset of initial element in selection within dataspace */
+ H5S_sel_is_contiguous_func_t is_contiguous; /* Method to determine if current selection is contiguous */
+ H5S_sel_is_single_func_t is_single; /* Method to determine if current selection is a single block */
+ H5S_sel_is_regular_func_t is_regular; /* Method to determine if current selection is "regular" */
+ H5S_sel_adjust_u_func_t adjust_u; /* Method to adjust a selection by an offset */
+ H5S_sel_project_scalar project_scalar; /* Method to construct scalar dataspace projection */
+ H5S_sel_project_simple project_simple; /* Method to construct simple dataspace projection */
+ H5S_sel_iter_init_func_t iter_init; /* Method to initialize iterator for current selection */
+} H5S_select_class_t;
+
+/* Selection information object */
+typedef struct {
+ const H5S_select_class_t *type; /* Pointer to selection's class info */
+ hbool_t offset_changed; /* Indicate that the offset for the selection has been changed */
+ hssize_t offset[H5S_MAX_RANK]; /* Offset within the extent */
+ hsize_t num_elem; /* Number of elements in selection */
+ union {
+ H5S_pnt_list_t *pnt_lst; /* List of selected points (order is important) */
+ H5S_hyper_sel_t *hslab; /* Info about hyperslab selections */
+ } sel_info;
+} H5S_select_t;
+
+/* Main dataspace structure (typedef'd in H5Sprivate.h) */
+struct H5S_t {
+ H5S_extent_t extent; /* Dataspace extent (must stay first) */
+ H5S_select_t select; /* Dataspace selection */
+};
+
+/* Selection iteration methods */
+/* Method to retrieve the current coordinates of iterator for current selection */
+typedef herr_t (*H5S_sel_iter_coords_func_t)(const H5S_sel_iter_t *iter, hsize_t *coords);
+/* Method to retrieve the current block of iterator for current selection */
+typedef herr_t (*H5S_sel_iter_block_func_t)(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end);
+/* Method to determine number of elements left in iterator for current selection */
+typedef hsize_t (*H5S_sel_iter_nelmts_func_t)(const H5S_sel_iter_t *iter);
+/* Method to determine if there are more blocks left in the current selection */
+typedef htri_t (*H5S_sel_iter_has_next_block_func_t)(const H5S_sel_iter_t *iter);
+/* Method to move selection iterator to the next element in the selection */
+typedef herr_t (*H5S_sel_iter_next_func_t)(H5S_sel_iter_t *iter, size_t nelem);
+/* Method to move selection iterator to the next block in the selection */
+typedef herr_t (*H5S_sel_iter_next_block_func_t)(H5S_sel_iter_t *iter);
+/* Method to release iterator for current selection */
+typedef herr_t (*H5S_sel_iter_release_func_t)(H5S_sel_iter_t *iter);
+
+/* Selection iteration class */
+typedef struct H5S_sel_iter_class_t {
+ H5S_sel_type type; /* Type of selection (all, none, points or hyperslab) */
+
+ /* Methods on selections */
+ H5S_sel_iter_coords_func_t iter_coords; /* Method to retrieve the current coordinates of iterator for current selection */
+ H5S_sel_iter_block_func_t iter_block; /* Method to retrieve the current block of iterator for current selection */
+ H5S_sel_iter_nelmts_func_t iter_nelmts; /* Method to determine number of elements left in iterator for current selection */
+ H5S_sel_iter_has_next_block_func_t iter_has_next_block; /* Method to query if there is another block left in the selection */
+ H5S_sel_iter_next_func_t iter_next; /* Method to move selection iterator to the next element in the selection */
+ H5S_sel_iter_next_block_func_t iter_next_block; /* Method to move selection iterator to the next block in the selection */
+ H5S_sel_iter_release_func_t iter_release; /* Method to release iterator for current selection */
+} H5S_sel_iter_class_t;
+
+/*
+ * All selection class methods.
+ */
+H5_DLLVAR const H5S_select_class_t H5S_sel_all[1];
+
+/*
+ * Hyperslab selection class methods.
+ */
+H5_DLLVAR const H5S_select_class_t H5S_sel_hyper[1];
+
+/*
+ * None selection class methods.
+ */
+H5_DLLVAR const H5S_select_class_t H5S_sel_none[1];
+
+/*
+ * Pointer selection class methods.
+ */
+H5_DLLVAR const H5S_select_class_t H5S_sel_point[1];
+
+/* Extent functions */
+H5_DLL herr_t H5S_extent_release(H5S_extent_t *extent);
+H5_DLL herr_t H5S_extent_copy(H5S_extent_t *dst, const H5S_extent_t *src,
+ hbool_t copy_max);
+
+/* Operations on selections */
+
+/* Testing functions */
+#ifdef H5S_TESTING
+H5_DLL htri_t H5S_select_shape_same_test(hid_t sid1, hid_t sid2);
+H5_DLL htri_t H5S_get_rebuild_status_test(hid_t space_id);
+#endif /* H5S_TESTING */
+
+#endif /*_H5Spkg_H*/
+
diff --git a/Resources/windows-libs/HDF5/include/H5Spublic.h b/Resources/windows-libs/HDF5/include/H5Spublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..c62a7b7648332f90700ffd56ab81a0187a441817
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Spublic.h
@@ -0,0 +1,152 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5S module.
+ */
+#ifndef _H5Spublic_H
+#define _H5Spublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/* Define atomic datatypes */
+#define H5S_ALL 0
+#define H5S_UNLIMITED ((hsize_t)(hssize_t)(-1))
+
+/* Define user-level maximum number of dimensions */
+#define H5S_MAX_RANK 32
+
+/* Different types of dataspaces */
+typedef enum H5S_class_t {
+ H5S_NO_CLASS = -1, /*error */
+ H5S_SCALAR = 0, /*scalar variable */
+ H5S_SIMPLE = 1, /*simple data space */
+ H5S_NULL = 2 /*null data space */
+} H5S_class_t;
+
+/* Different ways of combining selections */
+typedef enum H5S_seloper_t {
+ H5S_SELECT_NOOP = -1, /* error */
+ H5S_SELECT_SET = 0, /* Select "set" operation */
+ H5S_SELECT_OR, /* Binary "or" operation for hyperslabs
+ * (add new selection to existing selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A or B: CCCCCCCCCCCCCCCC
+ */
+ H5S_SELECT_AND, /* Binary "and" operation for hyperslabs
+ * (only leave overlapped regions in selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A and B: CCCC
+ */
+ H5S_SELECT_XOR, /* Binary "xor" operation for hyperslabs
+ * (only leave non-overlapped regions in selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A xor B: CCCCCC CCCCCC
+ */
+ H5S_SELECT_NOTB, /* Binary "not" operation for hyperslabs
+ * (only leave non-overlapped regions in original selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A not B: CCCCCC
+ */
+ H5S_SELECT_NOTA, /* Binary "not" operation for hyperslabs
+ * (only leave non-overlapped regions in new selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * B not A: CCCCCC
+ */
+ H5S_SELECT_APPEND, /* Append elements to end of point selection */
+ H5S_SELECT_PREPEND, /* Prepend elements to beginning of point selection */
+ H5S_SELECT_INVALID /* Invalid upper bound on selection operations */
+} H5S_seloper_t;
+
+/* Enumerated type for the type of selection */
+typedef enum {
+ H5S_SEL_ERROR = -1, /* Error */
+ H5S_SEL_NONE = 0, /* Nothing selected */
+ H5S_SEL_POINTS = 1, /* Sequence of points selected */
+ H5S_SEL_HYPERSLABS = 2, /* "New-style" hyperslab selection defined */
+ H5S_SEL_ALL = 3, /* Entire extent selected */
+ H5S_SEL_N /*THIS MUST BE LAST */
+}H5S_sel_type;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5S.c */
+H5_DLL hid_t H5Screate(H5S_class_t type);
+H5_DLL hid_t H5Screate_simple(int rank, const hsize_t dims[],
+ const hsize_t maxdims[]);
+H5_DLL herr_t H5Sset_extent_simple(hid_t space_id, int rank,
+ const hsize_t dims[],
+ const hsize_t max[]);
+H5_DLL hid_t H5Scopy(hid_t space_id);
+H5_DLL herr_t H5Sclose(hid_t space_id);
+H5_DLL herr_t H5Sencode(hid_t obj_id, void *buf, size_t *nalloc);
+H5_DLL hid_t H5Sdecode(const void *buf);
+H5_DLL hssize_t H5Sget_simple_extent_npoints(hid_t space_id);
+H5_DLL int H5Sget_simple_extent_ndims(hid_t space_id);
+H5_DLL int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[],
+ hsize_t maxdims[]);
+H5_DLL htri_t H5Sis_simple(hid_t space_id);
+H5_DLL hssize_t H5Sget_select_npoints(hid_t spaceid);
+H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op,
+ const hsize_t start[],
+ const hsize_t _stride[],
+ const hsize_t count[],
+ const hsize_t _block[]);
+/* #define NEW_HYPERSLAB_API */
+#ifdef NEW_HYPERSLAB_API
+H5_DLL hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op,
+ const hsize_t start[],
+ const hsize_t _stride[],
+ const hsize_t count[],
+ const hsize_t _block[]);
+H5_DLL herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op,
+ hid_t space2_id);
+H5_DLL hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op,
+ hid_t space2_id);
+#endif /* NEW_HYPERSLAB_API */
+H5_DLL herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op,
+ size_t num_elem, const hsize_t *coord);
+H5_DLL H5S_class_t H5Sget_simple_extent_type(hid_t space_id);
+H5_DLL herr_t H5Sset_extent_none(hid_t space_id);
+H5_DLL herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id);
+H5_DLL htri_t H5Sextent_equal(hid_t sid1, hid_t sid2);
+H5_DLL herr_t H5Sselect_all(hid_t spaceid);
+H5_DLL herr_t H5Sselect_none(hid_t spaceid);
+H5_DLL herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset);
+H5_DLL htri_t H5Sselect_valid(hid_t spaceid);
+H5_DLL hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid);
+H5_DLL hssize_t H5Sget_select_elem_npoints(hid_t spaceid);
+H5_DLL herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock,
+ hsize_t numblocks, hsize_t buf[/*numblocks*/]);
+H5_DLL herr_t H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint,
+ hsize_t numpoints, hsize_t buf[/*numpoints*/]);
+H5_DLL herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[],
+ hsize_t end[]);
+H5_DLL H5S_sel_type H5Sget_select_type(hid_t spaceid);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Spublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5StrType.h b/Resources/windows-libs/HDF5/include/H5StrType.h
new file mode 100644
index 0000000000000000000000000000000000000000..8b3a773d5a578fc6900a4e84977abc4c0b9276d6
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5StrType.h
@@ -0,0 +1,69 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef __H5StrType_H
+#define __H5StrType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! Class StrType operates on HDF5 string datatypes.
+class H5_DLLCPP StrType : public AtomType {
+ public:
+ // Creates a string type using a predefined type
+ StrType(const PredType& pred_type);
+
+ // Creates a string type with specified length - may be obsolete
+ StrType(const PredType& pred_type, const size_t& size);
+
+ // Creates a string type with specified length
+ StrType(const int dummy, const size_t& size);
+
+ // Gets the string datatype of the specified dataset
+ StrType(const DataSet& dataset);
+
+ // Retrieves the character set type of this string datatype.
+ H5T_cset_t getCset() const;
+
+ // Sets character set to be used.
+ void setCset(H5T_cset_t cset) const;
+
+ // Retrieves the string padding method for this string datatype.
+ H5T_str_t getStrpad() const;
+
+ // Defines the storage mechanism for character strings.
+ void setStrpad(H5T_str_t strpad) const;
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("StrType"); }
+
+ // default constructor
+ StrType();
+
+ // Creates a string datatype using an existing id
+ StrType(const hid_t existing_id);
+
+ // Copy constructor - makes a copy of the original object
+ StrType(const StrType& original);
+
+ // Noop destructor.
+ virtual ~StrType();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5StrType_H
diff --git a/Resources/windows-libs/HDF5/include/H5TBpublic.h b/Resources/windows-libs/HDF5/include/H5TBpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..874ef2077c9521b8a4f4493a0c6157cec4c9f300
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5TBpublic.h
@@ -0,0 +1,233 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5TBpublic_H
+#define _H5TBpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Create functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBmake_table( const char *table_title,
+ hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ hsize_t nrecords,
+ size_t type_size,
+ const char *field_names[],
+ const size_t *field_offset,
+ const hid_t *field_types,
+ hsize_t chunk_size,
+ void *fill_data,
+ int compress,
+ const void *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Write functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBappend_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBwrite_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+
+H5_HLDLL herr_t H5TBwrite_fields_name( hid_t loc_id,
+ const char *dset_name,
+ const char *field_names,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBwrite_fields_index( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ const int *field_index,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Read functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+
+H5_HLDLL herr_t H5TBread_table( hid_t loc_id,
+ const char *dset_name,
+ size_t dst_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *dst_buf );
+
+
+H5_HLDLL herr_t H5TBread_fields_name( hid_t loc_id,
+ const char *dset_name,
+ const char *field_names,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+H5_HLDLL herr_t H5TBread_fields_index( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ const int *field_index,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+
+H5_HLDLL herr_t H5TBread_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+/*-------------------------------------------------------------------------
+ *
+ * Inquiry functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5TBget_table_info ( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *nfields,
+ hsize_t *nrecords );
+
+H5_HLDLL herr_t H5TBget_field_info( hid_t loc_id,
+ const char *dset_name,
+ char *field_names[],
+ size_t *field_sizes,
+ size_t *field_offsets,
+ size_t *type_size );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Manipulation functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5TBdelete_record( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords );
+
+
+H5_HLDLL herr_t H5TBinsert_record( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t dst_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+H5_HLDLL herr_t H5TBadd_records_from( hid_t loc_id,
+ const char *dset_name1,
+ hsize_t start1,
+ hsize_t nrecords,
+ const char *dset_name2,
+ hsize_t start2 );
+
+H5_HLDLL herr_t H5TBcombine_tables( hid_t loc_id1,
+ const char *dset_name1,
+ hid_t loc_id2,
+ const char *dset_name2,
+ const char *dset_name3 );
+
+H5_HLDLL herr_t H5TBinsert_field( hid_t loc_id,
+ const char *dset_name,
+ const char *field_name,
+ hid_t field_type,
+ hsize_t position,
+ const void *fill_data,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBdelete_field( hid_t loc_id,
+ const char *dset_name,
+ const char *field_name );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Table attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBAget_title( hid_t loc_id,
+ char *table_title );
+
+H5_HLDLL htri_t H5TBAget_fill(hid_t loc_id,
+ const char *dset_name,
+ hid_t dset_id,
+ unsigned char *dst_buf);
+
+#ifdef __cplusplus
+}
+#endif
+
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5Tpkg.h b/Resources/windows-libs/HDF5/include/H5Tpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..bd37829680c8dfd1f854bedf0eefd08aa502931a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Tpkg.h
@@ -0,0 +1,1409 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, December 8, 1997
+ *
+ * Purpose: This file contains declarations which are visible only within
+ * the H5T package. Source files outside the H5T package should
+ * include H5Tprivate.h instead.
+ */
+#ifndef H5T_PACKAGE
+#error "Do not include this file outside the H5T package!"
+#endif
+
+#ifndef _H5Tpkg_H
+#define _H5Tpkg_H
+
+/*
+ * Define this to enable debugging.
+ */
+#ifdef NDEBUG
+# undef H5T_DEBUG
+#endif
+
+/* Get package's private header */
+#include "H5Tprivate.h"
+
+/* Other private headers needed by this file */
+#include "H5Fprivate.h" /* Files */
+#include "H5FLprivate.h" /* Free Lists */
+#include "H5Oprivate.h" /* Object headers */
+
+/* Other public headers needed by this file */
+#include "H5Spublic.h" /* Dataspace functions */
+
+/* Length of debugging name buffer */
+#define H5T_NAMELEN 32
+
+/* Macro to ease detecting "complex" datatypes (i.e. those with base types or fields) */
+#define H5T_IS_COMPLEX(t) ((t) == H5T_COMPOUND || (t) == H5T_ENUM || (t) == H5T_VLEN || (t) == H5T_ARRAY)
+
+/* Macro to ease detecting fixed "string" datatypes */
+#define H5T_IS_FIXED_STRING(dt) (H5T_STRING == (dt)->type)
+
+/* Macro to ease detecting variable-length "string" datatypes */
+#define H5T_IS_VL_STRING(dt) (H5T_VLEN == (dt)->type && H5T_VLEN_STRING == (dt)->u.vlen.type)
+
+/* Macro to ease detecting fixed or variable-length "string" datatypes */
+#define H5T_IS_STRING(dt) (H5T_IS_FIXED_STRING(dt) || H5T_IS_VL_STRING(dt))
+
+/* Macro to ease detecting atomic datatypes */
+#define H5T_IS_ATOMIC(dt) (!(H5T_IS_COMPLEX((dt)->type) || (dt)->type == H5T_OPAQUE))
+
+/* Macro to ease retrieving class of shared datatype */
+/* (Externally, a VL string is a string; internally, a VL string is a VL. Lie
+ * to the user if they have a VL string and tell them it's in the string
+ * class)
+ */
+#define H5T_GET_CLASS(shared, internal) ((internal) ? (shared)->type : (H5T_IS_VL_STRING(shared) ? H5T_STRING : (shared)->type))
+
+
+/*
+ * Datatype encoding versions
+ */
+
+/* This is the version to create all datatypes which don't contain
+ * array datatypes (atomic types, compound datatypes without array fields,
+ * vlen sequences of objects which aren't arrays, etc.) or VAX byte-ordered
+ * objects.
+ */
+#define H5O_DTYPE_VERSION_1 1
+
+/* This is the version to create all datatypes which contain H5T_ARRAY
+ * class objects (array definitely, potentially compound & vlen sequences also),
+ * but not VAX byte-ordered objects.
+ */
+#define H5O_DTYPE_VERSION_2 2
+
+/* This is the version to create all datatypes which contain VAX byte-ordered
+ * objects (floating-point types, currently).
+ */
+/* This version also packs compound & enum field names without padding */
+/* This version also encodes the member offset of compound fields more efficiently */
+/* This version also encodes array types more efficiently */
+#define H5O_DTYPE_VERSION_3 3
+
+/* The latest version of the format. Look through the 'encode helper' routine
+ * and 'size' callback for places to change when updating this. */
+#define H5O_DTYPE_VERSION_LATEST H5O_DTYPE_VERSION_3
+
+
+/* Flags for visiting datatype */
+#define H5T_VISIT_COMPLEX_FIRST 0x01 /* Visit complex datatype before visiting member/parent datatypes */
+#define H5T_VISIT_COMPLEX_LAST 0x02 /* Visit complex datatype after visiting member/parent datatypes */
+ /* (setting both flags will mean visiting complex type twice) */
+#define H5T_VISIT_SIMPLE 0x04 /* Visit simple datatypes (at all) */
+ /* (setting H5T_VISIT_SIMPLE and _not_ setting either H5T_VISIT_COMPLEX_FIRST or H5T_VISIT_COMPLEX_LAST will mean visiting _only_ "simple" "leafs" in the "tree" */
+ /* (_not_ setting H5T_VISIT_SIMPLE and setting either H5T_VISIT_COMPLEX_FIRST or H5T_VISIT_COMPLEX_LAST will mean visiting all nodes _except_ "simple" "leafs" in the "tree" */
+
+
+/* Define an internal macro for converting between floating number(float and double) and floating number.
+ * All Cray compilers don't support denormalized floating values generating exception(?). */
+#if H5_CONVERT_DENORMAL_FLOAT
+#define H5T_CONV_INTERNAL_FP_FP 1
+#endif /*H5_CONVERT_DENORMAL_FLOAT*/
+
+/* Define an internal macro for converting between floating number(float and double) and long double.
+ * All Cray compilers don't support denormalized floating values generating exception(?). NEC doesn't
+ * support long double. */
+#if H5_SIZEOF_LONG_DOUBLE && H5_CONVERT_DENORMAL_FLOAT
+#define H5T_CONV_INTERNAL_FP_LDOUBLE 1
+#endif /*H5_SIZEOF_LONG_DOUBLE && H5_CONVERT_DENORMAL_FLOAT*/
+
+/* Define an internal macro for converting all integers to long double. SGI compilers give some
+ * incorrect conversions. */
+#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE) || (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_INTEGER_LDOUBLE 1
+#endif
+
+/* Define an internal macro for converting unsigned long to float.
+ * Pathscale compiler on Sandia's Linux machine has some problem.
+ * 64-bit Solaris does different rounding. */
+#if (H5_WANT_DATA_ACCURACY && H5_ULONG_TO_FLOAT_ACCURATE && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \
+ (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_ULONG_FLT 1
+#endif
+
+/* Define an internal macro for converting unsigned (long) long to double.
+ * 64-bit Solaris does different rounding. */
+#if (H5_WANT_DATA_ACCURACY && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_ULONG_DBL 1
+#endif
+
+/* Define an internal macro for converting unsigned long to long double. SGI compilers give some
+ * incorrect conversions. 64-bit Solaris does different rounding. */
+#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \
+ (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_ULONG_LDOUBLE 1
+#endif
+
+/* Define an internal macro for converting long long to long double. Mac OS 10.4 gives some
+ * incorrect conversions. */
+#if (H5_WANT_DATA_ACCURACY && H5_INTEGER_TO_LDOUBLE_ACCURATE && defined(H5_LLONG_TO_LDOUBLE_CORRECT)) || \
+ (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_LLONG_LDOUBLE 1
+#endif
+
+/* Define an internal macro for converting unsigned long long to floating numbers. SGI compilers give
+ * some incorect conversion. 64-bit Solaris does different rounding. Windows Visual Studio 6 does
+ * not support unsigned long long. */
+#if (H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE) || \
+ (!H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS)
+#define H5T_CONV_INTERNAL_ULLONG_FP 1
+#endif
+
+/* Define an internal macro for converting unsigned long long to long double. SGI compilers give
+ * some incorect conversion. 64-bit Solaris does different rounding. Windows Visual Studio 6 does
+ * not support unsigned long long. For FreeBSD(sleipnir), the last 2 bytes of mantissa are lost when
+ * compiler tries to do the conversion. For Cygwin, compiler doesn't do rounding correctly.
+ * Mac OS 10.4 gives some incorrect result. */
+#if (H5_WANT_DATA_ACCURACY && H5_ULLONG_TO_FP_CAST_WORKS && H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE && \
+ defined(H5_ULLONG_TO_LDOUBLE_PRECISION) && defined(H5_LLONG_TO_LDOUBLE_CORRECT)) || (!H5_WANT_DATA_ACCURACY && \
+ H5_ULLONG_TO_FP_CAST_WORKS)
+#define H5T_CONV_INTERNAL_ULLONG_LDOUBLE 1
+#endif
+
+/* Define an internal macro for converting long double to all integers. SGI compilers give some incorrect
+ * conversions. HP-UX 11.00 compiler generates floating exception. */
+#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_INTEGER_WORKS) || \
+ (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS)
+#define H5T_CONV_INTERNAL_LDOUBLE_INTEGER 1
+#endif
+
+/* Define an internal macro for converting long double to unsigned int. SGI compilers give some incorrect
+ * conversions. HP-UX 11.00 compiler generates floating exception. Some Intel compilers on some Linux
+ * give incorrect values. */
+#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_UINT_ACCURATE && \
+ H5_LDOUBLE_TO_INTEGER_WORKS) || (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS)
+#define H5T_CONV_INTERNAL_LDOUBLE_UINT 1
+#endif
+
+/* Define an internal macro for converting floating numbers to long long. The hard conversion on Windows
+ * .NET 2003 has a bug and gives wrong exception value. */
+#if (H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS)) || (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_FP_LLONG 1
+#endif
+
+/* Define an internal macro for converting long double to long long. SGI compilers give some incorrect
+ * conversions. Mac OS 10.4 gives incorrect conversions. HP-UX 11.00 compiler generates floating exception.
+ * The hard conversion on Windows .NET 2003 has a bug and gives wrong exception value. */
+#if (H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS) && H5_LDOUBLE_TO_INTEGER_ACCURATE && \
+ H5_LDOUBLE_TO_INTEGER_WORKS && defined(H5_LDOUBLE_TO_LLONG_ACCURATE)) || \
+ (!H5_WANT_DATA_ACCURACY && !defined(H5_HW_FP_TO_LLONG_NOT_WORKS) && H5_LDOUBLE_TO_INTEGER_WORKS)
+#define H5T_CONV_INTERNAL_LDOUBLE_LLONG 1
+#endif
+
+/* Define an internal macro for converting floating numbers to unsigned long long. PGI compiler does
+ * roundup when the source fraction part is greater than 0.5. HP-UX compilers set the maximal number
+ * for unsigned long long as 0x7fffffffffffffff during conversion. */
+#if (H5_WANT_DATA_ACCURACY && H5_FP_TO_ULLONG_ACCURATE && defined(H5_FP_TO_ULLONG_RIGHT_MAXIMUM)) || \
+ (!H5_WANT_DATA_ACCURACY)
+#define H5T_CONV_INTERNAL_FP_ULLONG 1
+#else
+#define H5T_CONV_INTERNAL_FP_ULLONG 0
+#endif
+
+/* Define an internal macro for converting long double to unsigned long long. SGI compilers give some
+ * incorrect conversions. Mac OS 10.4 gives incorrect conversions. HP-UX 11.00 compiler generates
+ * floating exception. */
+#if (H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_ACCURATE && H5_LDOUBLE_TO_INTEGER_WORKS && \
+ H5_FP_TO_ULLONG_ACCURATE && defined(H5_FP_TO_ULLONG_RIGHT_MAXIMUM) && defined(H5_LDOUBLE_TO_LLONG_ACCURATE)) || \
+ (!H5_WANT_DATA_ACCURACY && H5_LDOUBLE_TO_INTEGER_WORKS)
+#define H5T_CONV_INTERNAL_LDOUBLE_ULLONG 1
+#else
+#define H5T_CONV_INTERNAL_LDOUBLE_ULLONG 0
+#endif
+
+/* Statistics about a conversion function */
+struct H5T_stats_t {
+ unsigned ncalls; /*num calls to conversion function */
+ hsize_t nelmts; /*total data points converted */
+ H5_timer_t timer; /*total time for conversion */
+};
+
+/* The datatype conversion database */
+struct H5T_path_t {
+ char name[H5T_NAMELEN]; /*name for debugging only */
+ H5T_t *src; /*source datatype */
+ H5T_t *dst; /*destination datatype */
+ H5T_conv_t func; /*data conversion function */
+ hbool_t is_hard; /*is it a hard function? */
+ hbool_t is_noop; /*is it the noop conversion? */
+ hbool_t are_compounds; /*are source and dest both compounds?*/
+ H5T_stats_t stats; /*statistics for the conversion */
+ H5T_cdata_t cdata; /*data for this function */
+};
+
+typedef struct H5T_atomic_t {
+ H5T_order_t order; /*byte order */
+ size_t prec; /*precision in bits */
+ size_t offset; /*bit position of lsb of value */
+ H5T_pad_t lsb_pad;/*type of lsb padding */
+ H5T_pad_t msb_pad;/*type of msb padding */
+ union {
+ struct {
+ H5T_sign_t sign; /*type of integer sign */
+ } i; /*integer; integer types */
+
+ struct {
+ size_t sign; /*bit position of sign bit */
+ size_t epos; /*position of lsb of exponent */
+ size_t esize; /*size of exponent in bits */
+ uint64_t ebias; /*exponent bias */
+ size_t mpos; /*position of lsb of mantissa */
+ size_t msize; /*size of mantissa */
+ H5T_norm_t norm; /*normalization */
+ H5T_pad_t pad; /*type of padding for internal bits */
+ } f; /*floating-point types */
+
+ struct {
+ H5T_cset_t cset; /*character set */
+ H5T_str_t pad; /*space or null padding of extra bytes */
+ } s; /*string types */
+
+ struct {
+ H5R_type_t rtype; /*type of reference stored */
+ H5T_loc_t loc; /* Location of data in buffer */
+ } r; /*reference types */
+ } u;
+} H5T_atomic_t;
+
+/* How members are sorted for compound or enum datatypes */
+typedef enum H5T_sort_t {
+ H5T_SORT_NONE = 0, /*not sorted */
+ H5T_SORT_NAME = 1, /*sorted by member name */
+ H5T_SORT_VALUE = 2 /*sorted by memb offset or enum value*/
+} H5T_sort_t;
+
+/* A compound datatype member */
+typedef struct H5T_cmemb_t {
+ char *name; /*name of this member */
+ size_t offset; /*offset from beginning of struct */
+ size_t size; /*size of this member */
+ struct H5T_t *type; /*type of this member */
+} H5T_cmemb_t;
+
+/* A compound datatype */
+typedef struct H5T_compnd_t {
+ unsigned nalloc; /*num entries allocated in MEMB array*/
+ unsigned nmembs; /*number of members defined in struct*/
+ H5T_sort_t sorted; /*how are members sorted? */
+ hbool_t packed; /*are members packed together? */
+ H5T_cmemb_t *memb; /*array of struct members */
+ size_t memb_size; /*total of all member sizes */
+} H5T_compnd_t;
+
+/* An enumeration datatype */
+typedef struct H5T_enum_t {
+ unsigned nalloc; /*num entries allocated */
+ unsigned nmembs; /*number of members defined in enum */
+ H5T_sort_t sorted; /*how are members sorted? */
+ uint8_t *value; /*array of values */
+ char **name; /*array of symbol names */
+} H5T_enum_t;
+
+/* VL function pointers */
+typedef ssize_t (*H5T_vlen_getlenfunc_t)(const void *vl_addr);
+typedef void * (*H5T_vlen_getptrfunc_t)(void *vl_addr);
+typedef htri_t (*H5T_vlen_isnullfunc_t)(const H5F_t *f, void *vl_addr);
+typedef herr_t (*H5T_vlen_readfunc_t)(H5F_t *f, hid_t dxpl_id, void *_vl, void *buf, size_t len);
+typedef herr_t (*H5T_vlen_writefunc_t)(H5F_t *f, hid_t dxpl_id, const H5T_vlen_alloc_info_t *vl_alloc_info, void *_vl, void *buf, void *_bg, size_t seq_len, size_t base_size);
+typedef herr_t (*H5T_vlen_setnullfunc_t)(H5F_t *f, hid_t dxpl_id, void *_vl, void *_bg);
+
+/* VL types */
+typedef enum {
+ H5T_VLEN_BADTYPE = -1, /* invalid VL Type */
+ H5T_VLEN_SEQUENCE = 0, /* VL sequence */
+ H5T_VLEN_STRING, /* VL string */
+ H5T_VLEN_MAXTYPE /* highest type (Invalid as true type) */
+} H5T_vlen_type_t;
+
+/* A VL datatype */
+typedef struct H5T_vlen_t {
+ H5T_vlen_type_t type; /* Type of VL data in buffer */
+ H5T_loc_t loc; /* Location of VL data in buffer */
+ H5T_cset_t cset; /* For VL string. character set */
+ H5T_str_t pad; /* For VL string. space or null padding of
+ * extra bytes */
+ H5F_t *f; /* File ID (if VL data is on disk) */
+ H5T_vlen_getptrfunc_t getptr; /* Function to get VL sequence pointer */
+ H5T_vlen_getlenfunc_t getlen; /* Function to get VL sequence size (in element units, not bytes) */
+ H5T_vlen_isnullfunc_t isnull; /* Function to check if VL value is NIL */
+ H5T_vlen_readfunc_t read; /* Function to read VL sequence into buffer */
+ H5T_vlen_writefunc_t write; /* Function to write VL sequence from buffer */
+ H5T_vlen_setnullfunc_t setnull; /* Function to set a VL value to NIL */
+} H5T_vlen_t;
+
+/* An opaque datatype */
+typedef struct H5T_opaque_t {
+ char *tag; /*short type description string */
+} H5T_opaque_t;
+
+/* An array datatype */
+typedef struct H5T_array_t {
+ size_t nelem; /* total number of elements in array */
+ unsigned ndims; /* member dimensionality */
+ size_t dim[H5S_MAX_RANK]; /* size in each dimension */
+} H5T_array_t;
+
+typedef enum H5T_state_t {
+ H5T_STATE_TRANSIENT, /*type is a modifiable, closable transient */
+ H5T_STATE_RDONLY, /*transient, not modifiable, closable */
+ H5T_STATE_IMMUTABLE, /*transient, not modifiable, not closable */
+ H5T_STATE_NAMED, /*named constant, not open */
+ H5T_STATE_OPEN /*named constant, open object header */
+} H5T_state_t;
+
+ /* This struct is shared between all occurances of an open named type */
+typedef struct H5T_shared_t {
+ hsize_t fo_count; /* number of references to this file object */
+ H5T_state_t state; /*current state of the type */
+ H5T_class_t type; /*which class of type is this? */
+ size_t size; /*total size of an instance of this type */
+ unsigned version; /* Version of object header message to encode this object with */
+ hbool_t force_conv;/* Set if this type always needs to be converted and H5T__conv_noop cannot be called */
+ struct H5T_t *parent;/*parent type for derived datatypes */
+ union {
+ H5T_atomic_t atomic; /* an atomic datatype */
+ H5T_compnd_t compnd; /* a compound datatype (struct) */
+ H5T_enum_t enumer; /* an enumeration type (enum) */
+ H5T_vlen_t vlen; /* a variable-length datatype */
+ H5T_opaque_t opaque; /* an opaque datatype */
+ H5T_array_t array; /* an array datatype */
+ } u;
+} H5T_shared_t;
+
+struct H5T_t {
+ H5O_shared_t sh_loc; /* Shared message info (must be first) */
+
+ H5T_shared_t *shared; /* all other information */
+ H5O_loc_t oloc; /* Object location, if the type is a named type */
+ H5G_name_t path; /* group hier. path if the type is a named type */
+};
+
+/* The master list of soft conversion functions */
+typedef struct H5T_soft_t {
+ char name[H5T_NAMELEN]; /*name for debugging only */
+ H5T_class_t src; /*source datatype class */
+ H5T_class_t dst; /*destination datatype class */
+ H5T_conv_t func; /*the conversion function */
+} H5T_soft_t;
+
+/* Bit search direction */
+typedef enum H5T_sdir_t {
+ H5T_BIT_LSB, /*search lsb toward msb */
+ H5T_BIT_MSB /*search msb toward lsb */
+} H5T_sdir_t;
+
+/* Typedef for named datatype creation operation */
+typedef struct {
+ H5T_t *dt; /* Datatype to commit */
+ hid_t tcpl_id; /* Named datatype creation property list */
+} H5T_obj_create_t;
+
+/* Typedef for datatype iteration operations */
+typedef herr_t (*H5T_operator_t)(H5T_t *dt, void *op_data/*in,out*/);
+
+/*
+ * Alignment information for native types. A value of N indicates that the
+ * data must be aligned on an address ADDR such that 0 == ADDR mod N. When
+ * N=1 no alignment is required; N=0 implies that alignment constraints were
+ * not calculated. These alignment info is only for H5Tget_native_type.
+ * These values are used for structure alignment.
+ */
+H5_DLLVAR size_t H5T_NATIVE_SCHAR_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_SHORT_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_LONG_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_LLONG_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_FLOAT_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_DOUBLE_COMP_ALIGN_g;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+H5_DLLVAR size_t H5T_NATIVE_LDOUBLE_COMP_ALIGN_g;
+#endif
+
+H5_DLLVAR size_t H5T_POINTER_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_HVL_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_HOBJREF_COMP_ALIGN_g;
+H5_DLLVAR size_t H5T_HDSETREGREF_COMP_ALIGN_g;
+
+/*
+ * Alignment information for native types. A value of N indicates that the
+ * data must be aligned on an address ADDR such that 0 == ADDR mod N. When
+ * N=1 no alignment is required; N=0 implies that alignment constraints were
+ * not calculated.
+ */
+H5_DLLVAR size_t H5T_NATIVE_SCHAR_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UCHAR_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_SHORT_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_USHORT_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_LONG_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_ULONG_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_LLONG_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_ULLONG_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_FLOAT_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_DOUBLE_ALIGN_g;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+H5_DLLVAR size_t H5T_NATIVE_LDOUBLE_ALIGN_g;
+#endif
+
+/* C9x alignment constraints */
+H5_DLLVAR size_t H5T_NATIVE_INT8_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT8_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_LEAST8_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_LEAST8_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_FAST8_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_FAST8_ALIGN_g;
+
+H5_DLLVAR size_t H5T_NATIVE_INT16_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT16_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_LEAST16_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_LEAST16_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_FAST16_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_FAST16_ALIGN_g;
+
+H5_DLLVAR size_t H5T_NATIVE_INT32_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT32_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_LEAST32_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_LEAST32_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_FAST32_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_FAST32_ALIGN_g;
+
+H5_DLLVAR size_t H5T_NATIVE_INT64_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT64_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_LEAST64_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_LEAST64_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_INT_FAST64_ALIGN_g;
+H5_DLLVAR size_t H5T_NATIVE_UINT_FAST64_ALIGN_g;
+
+/* Useful floating-point values for conversion routines */
+/* (+/- Inf for all floating-point types) */
+H5_DLLVAR float H5T_NATIVE_FLOAT_POS_INF_g;
+H5_DLLVAR float H5T_NATIVE_FLOAT_NEG_INF_g;
+H5_DLLVAR double H5T_NATIVE_DOUBLE_POS_INF_g;
+H5_DLLVAR double H5T_NATIVE_DOUBLE_NEG_INF_g;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+H5_DLLVAR double H5T_NATIVE_LDOUBLE_POS_INF_g;
+H5_DLLVAR double H5T_NATIVE_LDOUBLE_NEG_INF_g;
+#endif
+
+/* Declare extern the free lists for H5T_t's and H5T_shared_t's */
+H5FL_EXTERN(H5T_t);
+H5FL_EXTERN(H5T_shared_t);
+
+/* Common functions */
+H5_DLL herr_t H5T__term_deprec_interface(void);
+H5_DLL H5T_t *H5T__create(H5T_class_t type, size_t size);
+H5_DLL herr_t H5T__commit(H5F_t *file, H5T_t *type, hid_t tcpl_id, hid_t dxpl_id);
+H5_DLL herr_t H5T__commit_named(const H5G_loc_t *loc, const char *name,
+ H5T_t *dt, hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id, hid_t dxpl_id);
+H5_DLL H5T_t *H5T__alloc(void);
+H5_DLL herr_t H5T__free(H5T_t *dt);
+H5_DLL herr_t H5T__visit(H5T_t *dt, unsigned visit_flags, H5T_operator_t op,
+ void *op_value);
+H5_DLL herr_t H5T__upgrade_version(H5T_t *dt, unsigned new_version);
+
+/* Conversion functions */
+H5_DLL herr_t H5T__conv_noop(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_order(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_order_opt(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_struct(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_struct_opt(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_enum(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_enum_numeric(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_vlen(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_array(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_i_i(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_f_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_f_i(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_i_f(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_s_s(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_b_b(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *_buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_schar_uchar(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_schar(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_short(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_ushort(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_short(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_ushort(hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride,
+ size_t bkg_stride, void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_short_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_int_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_long_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+H5_DLL herr_t H5T__conv_llong_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_schar_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uchar_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_short_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ushort_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_int_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_uint_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_long_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ulong_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_llong_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_float(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_double(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ullong_ldouble(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_float_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_double_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_schar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_uchar(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_short(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_ushort(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_int(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_uint(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_long(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_ulong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_llong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+H5_DLL herr_t H5T__conv_ldouble_ullong(hid_t src_id, hid_t dst_id,
+ H5T_cdata_t *cdata, size_t nelmts,
+ size_t buf_stride, size_t bkg_stride,
+ void *buf, void *bkg,
+ hid_t dset_xfer_plist);
+
+/* Bit twiddling functions */
+H5_DLL void H5T__bit_copy(uint8_t *dst, size_t dst_offset, const uint8_t *src,
+ size_t src_offset, size_t size);
+H5_DLL herr_t H5T__bit_shift(uint8_t *buf, ssize_t shift_dist, size_t offset, size_t size);
+H5_DLL void H5T__bit_set(uint8_t *buf, size_t offset, size_t size,
+ hbool_t value);
+H5_DLL uint64_t H5T__bit_get_d(uint8_t *buf, size_t offset, size_t size);
+H5_DLL void H5T__bit_set_d(uint8_t *buf, size_t offset, size_t size,
+ uint64_t val);
+H5_DLL ssize_t H5T__bit_find(uint8_t *buf, size_t offset, size_t size,
+ H5T_sdir_t direction, hbool_t value);
+H5_DLL htri_t H5T__bit_inc(uint8_t *buf, size_t start, size_t size);
+H5_DLL htri_t H5T__bit_dec(uint8_t *buf, size_t start, size_t size);
+H5_DLL void H5T__bit_neg(uint8_t *buf, size_t start, size_t size);
+
+/* VL functions */
+H5_DLL H5T_t * H5T__vlen_create(const H5T_t *base);
+H5_DLL htri_t H5T__vlen_set_loc(const H5T_t *dt, H5F_t *f, H5T_loc_t loc);
+
+/* Array functions */
+H5_DLL H5T_t *H5T__array_create(H5T_t *base, unsigned ndims, const hsize_t dim[/* ndims */]);
+H5_DLL int H5T__get_array_ndims(const H5T_t *dt);
+H5_DLL int H5T__get_array_dims(const H5T_t *dt, hsize_t dims[]);
+
+/* Compound functions */
+H5_DLL herr_t H5T__insert(H5T_t *parent, const char *name, size_t offset,
+ const H5T_t *member);
+H5_DLL size_t H5T__get_member_size(const H5T_t *dt, unsigned membno);
+H5_DLL void H5T__update_packed(const H5T_t *dt);
+H5_DLL H5T_subset_info_t *H5T__conv_struct_subset(const H5T_cdata_t *cdata);
+
+/* Enumerated type functions */
+H5_DLL H5T_t *H5T__enum_create(const H5T_t *parent);
+H5_DLL herr_t H5T__enum_insert(const H5T_t *dt, const char *name, const void *value);
+H5_DLL herr_t H5T__get_member_value(const H5T_t *dt, unsigned membno, void *value);
+
+/* Field functions (for both compound & enumerated types) */
+H5_DLL char *H5T__get_member_name(H5T_t const *dt, unsigned membno);
+H5_DLL herr_t H5T__sort_value(const H5T_t *dt, int *map);
+H5_DLL herr_t H5T__sort_name(const H5T_t *dt, int *map);
+
+/* Debugging functions */
+H5_DLL herr_t H5T__print_stats(H5T_path_t *path, int *nprint/*in,out*/);
+
+#endif /* _H5Tpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Tpublic.h b/Resources/windows-libs/HDF5/include/H5Tpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..d646ef1e887e048fdf6a5de709e2bd6db4f45519
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Tpublic.h
@@ -0,0 +1,621 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5T module.
+ */
+#ifndef _H5Tpublic_H
+#define _H5Tpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+#define HOFFSET(S,M) (offsetof(S,M))
+
+/* These are the various classes of datatypes */
+/* If this goes over 16 types (0-15), the file format will need to change) */
+typedef enum H5T_class_t {
+ H5T_NO_CLASS = -1, /*error */
+ H5T_INTEGER = 0, /*integer types */
+ H5T_FLOAT = 1, /*floating-point types */
+ H5T_TIME = 2, /*date and time types */
+ H5T_STRING = 3, /*character string types */
+ H5T_BITFIELD = 4, /*bit field types */
+ H5T_OPAQUE = 5, /*opaque types */
+ H5T_COMPOUND = 6, /*compound types */
+ H5T_REFERENCE = 7, /*reference types */
+ H5T_ENUM = 8, /*enumeration types */
+ H5T_VLEN = 9, /*Variable-Length types */
+ H5T_ARRAY = 10, /*Array types */
+
+ H5T_NCLASSES /*this must be last */
+} H5T_class_t;
+
+/* Byte orders */
+typedef enum H5T_order_t {
+ H5T_ORDER_ERROR = -1, /*error */
+ H5T_ORDER_LE = 0, /*little endian */
+ H5T_ORDER_BE = 1, /*bit endian */
+ H5T_ORDER_VAX = 2, /*VAX mixed endian */
+ H5T_ORDER_MIXED = 3, /*Compound type with mixed member orders */
+ H5T_ORDER_NONE = 4 /*no particular order (strings, bits,..) */
+ /*H5T_ORDER_NONE must be last */
+} H5T_order_t;
+
+/* Types of integer sign schemes */
+typedef enum H5T_sign_t {
+ H5T_SGN_ERROR = -1, /*error */
+ H5T_SGN_NONE = 0, /*this is an unsigned type */
+ H5T_SGN_2 = 1, /*two's complement */
+
+ H5T_NSGN = 2 /*this must be last! */
+} H5T_sign_t;
+
+/* Floating-point normalization schemes */
+typedef enum H5T_norm_t {
+ H5T_NORM_ERROR = -1, /*error */
+ H5T_NORM_IMPLIED = 0, /*msb of mantissa isn't stored, always 1 */
+ H5T_NORM_MSBSET = 1, /*msb of mantissa is always 1 */
+ H5T_NORM_NONE = 2 /*not normalized */
+ /*H5T_NORM_NONE must be last */
+} H5T_norm_t;
+
+/*
+ * Character set to use for text strings. Do not change these values since
+ * they appear in HDF5 files!
+ */
+typedef enum H5T_cset_t {
+ H5T_CSET_ERROR = -1, /*error */
+ H5T_CSET_ASCII = 0, /*US ASCII */
+ H5T_CSET_UTF8 = 1, /*UTF-8 Unicode encoding */
+ H5T_CSET_RESERVED_2 = 2, /*reserved for later use */
+ H5T_CSET_RESERVED_3 = 3, /*reserved for later use */
+ H5T_CSET_RESERVED_4 = 4, /*reserved for later use */
+ H5T_CSET_RESERVED_5 = 5, /*reserved for later use */
+ H5T_CSET_RESERVED_6 = 6, /*reserved for later use */
+ H5T_CSET_RESERVED_7 = 7, /*reserved for later use */
+ H5T_CSET_RESERVED_8 = 8, /*reserved for later use */
+ H5T_CSET_RESERVED_9 = 9, /*reserved for later use */
+ H5T_CSET_RESERVED_10 = 10, /*reserved for later use */
+ H5T_CSET_RESERVED_11 = 11, /*reserved for later use */
+ H5T_CSET_RESERVED_12 = 12, /*reserved for later use */
+ H5T_CSET_RESERVED_13 = 13, /*reserved for later use */
+ H5T_CSET_RESERVED_14 = 14, /*reserved for later use */
+ H5T_CSET_RESERVED_15 = 15 /*reserved for later use */
+} H5T_cset_t;
+#define H5T_NCSET H5T_CSET_RESERVED_2 /*Number of character sets actually defined */
+
+/*
+ * Type of padding to use in character strings. Do not change these values
+ * since they appear in HDF5 files!
+ */
+typedef enum H5T_str_t {
+ H5T_STR_ERROR = -1, /*error */
+ H5T_STR_NULLTERM = 0, /*null terminate like in C */
+ H5T_STR_NULLPAD = 1, /*pad with nulls */
+ H5T_STR_SPACEPAD = 2, /*pad with spaces like in Fortran */
+ H5T_STR_RESERVED_3 = 3, /*reserved for later use */
+ H5T_STR_RESERVED_4 = 4, /*reserved for later use */
+ H5T_STR_RESERVED_5 = 5, /*reserved for later use */
+ H5T_STR_RESERVED_6 = 6, /*reserved for later use */
+ H5T_STR_RESERVED_7 = 7, /*reserved for later use */
+ H5T_STR_RESERVED_8 = 8, /*reserved for later use */
+ H5T_STR_RESERVED_9 = 9, /*reserved for later use */
+ H5T_STR_RESERVED_10 = 10, /*reserved for later use */
+ H5T_STR_RESERVED_11 = 11, /*reserved for later use */
+ H5T_STR_RESERVED_12 = 12, /*reserved for later use */
+ H5T_STR_RESERVED_13 = 13, /*reserved for later use */
+ H5T_STR_RESERVED_14 = 14, /*reserved for later use */
+ H5T_STR_RESERVED_15 = 15 /*reserved for later use */
+} H5T_str_t;
+#define H5T_NSTR H5T_STR_RESERVED_3 /*num H5T_str_t types actually defined */
+
+/* Type of padding to use in other atomic types */
+typedef enum H5T_pad_t {
+ H5T_PAD_ERROR = -1, /*error */
+ H5T_PAD_ZERO = 0, /*always set to zero */
+ H5T_PAD_ONE = 1, /*always set to one */
+ H5T_PAD_BACKGROUND = 2, /*set to background value */
+
+ H5T_NPAD = 3 /*THIS MUST BE LAST */
+} H5T_pad_t;
+
+/* Commands sent to conversion functions */
+typedef enum H5T_cmd_t {
+ H5T_CONV_INIT = 0, /*query and/or initialize private data */
+ H5T_CONV_CONV = 1, /*convert data from source to dest datatype */
+ H5T_CONV_FREE = 2 /*function is being removed from path */
+} H5T_cmd_t;
+
+/* How is the `bkg' buffer used by the conversion function? */
+typedef enum H5T_bkg_t {
+ H5T_BKG_NO = 0, /*background buffer is not needed, send NULL */
+ H5T_BKG_TEMP = 1, /*bkg buffer used as temp storage only */
+ H5T_BKG_YES = 2 /*init bkg buf with data before conversion */
+} H5T_bkg_t;
+
+/* Type conversion client data */
+typedef struct H5T_cdata_t {
+ H5T_cmd_t command;/*what should the conversion function do? */
+ H5T_bkg_t need_bkg;/*is the background buffer needed? */
+ hbool_t recalc; /*recalculate private data */
+ void *priv; /*private data */
+} H5T_cdata_t;
+
+/* Conversion function persistence */
+typedef enum H5T_pers_t {
+ H5T_PERS_DONTCARE = -1, /*wild card */
+ H5T_PERS_HARD = 0, /*hard conversion function */
+ H5T_PERS_SOFT = 1 /*soft conversion function */
+} H5T_pers_t;
+
+/* The order to retrieve atomic native datatype */
+typedef enum H5T_direction_t {
+ H5T_DIR_DEFAULT = 0, /*default direction is inscendent */
+ H5T_DIR_ASCEND = 1, /*in inscendent order */
+ H5T_DIR_DESCEND = 2 /*in descendent order */
+} H5T_direction_t;
+
+/* The exception type passed into the conversion callback function */
+typedef enum H5T_conv_except_t {
+ H5T_CONV_EXCEPT_RANGE_HI = 0, /*source value is greater than destination's range */
+ H5T_CONV_EXCEPT_RANGE_LOW = 1, /*source value is less than destination's range */
+ H5T_CONV_EXCEPT_PRECISION = 2, /*source value loses precision in destination */
+ H5T_CONV_EXCEPT_TRUNCATE = 3, /*source value is truncated in destination */
+ H5T_CONV_EXCEPT_PINF = 4, /*source value is positive infinity(floating number) */
+ H5T_CONV_EXCEPT_NINF = 5, /*source value is negative infinity(floating number) */
+ H5T_CONV_EXCEPT_NAN = 6 /*source value is NaN(floating number) */
+} H5T_conv_except_t;
+
+/* The return value from conversion callback function H5T_conv_except_func_t */
+typedef enum H5T_conv_ret_t {
+ H5T_CONV_ABORT = -1, /*abort conversion */
+ H5T_CONV_UNHANDLED = 0, /*callback function failed to handle the exception */
+ H5T_CONV_HANDLED = 1 /*callback function handled the exception successfully */
+} H5T_conv_ret_t;
+
+/* Variable Length Datatype struct in memory */
+/* (This is only used for VL sequences, not VL strings, which are stored in char *'s) */
+typedef struct {
+ size_t len; /* Length of VL data (in base type units) */
+ void *p; /* Pointer to VL data */
+} hvl_t;
+
+/* Variable Length String information */
+#define H5T_VARIABLE ((size_t)(-1)) /* Indicate that a string is variable length (null-terminated in C, instead of fixed length) */
+
+/* Opaque information */
+#define H5T_OPAQUE_TAG_MAX 256 /* Maximum length of an opaque tag */
+ /* This could be raised without too much difficulty */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* All datatype conversion functions are... */
+typedef herr_t (*H5T_conv_t) (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf,
+ void *bkg, hid_t dset_xfer_plist);
+
+/* Exception handler. If an exception like overflow happenes during conversion,
+ * this function is called if it's registered through H5Pset_type_conv_cb.
+ */
+typedef H5T_conv_ret_t (*H5T_conv_except_func_t)(H5T_conv_except_t except_type,
+ hid_t src_id, hid_t dst_id, void *src_buf, void *dst_buf, void *user_data);
+
+/* When this header is included from a private header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/*
+ * The IEEE floating point types in various byte orders.
+ */
+#define H5T_IEEE_F32BE (H5OPEN H5T_IEEE_F32BE_g)
+#define H5T_IEEE_F32LE (H5OPEN H5T_IEEE_F32LE_g)
+#define H5T_IEEE_F64BE (H5OPEN H5T_IEEE_F64BE_g)
+#define H5T_IEEE_F64LE (H5OPEN H5T_IEEE_F64LE_g)
+H5_DLLVAR hid_t H5T_IEEE_F32BE_g;
+H5_DLLVAR hid_t H5T_IEEE_F32LE_g;
+H5_DLLVAR hid_t H5T_IEEE_F64BE_g;
+H5_DLLVAR hid_t H5T_IEEE_F64LE_g;
+
+/*
+ * These are "standard" types. For instance, signed (2's complement) and
+ * unsigned integers of various sizes and byte orders.
+ */
+#define H5T_STD_I8BE (H5OPEN H5T_STD_I8BE_g)
+#define H5T_STD_I8LE (H5OPEN H5T_STD_I8LE_g)
+#define H5T_STD_I16BE (H5OPEN H5T_STD_I16BE_g)
+#define H5T_STD_I16LE (H5OPEN H5T_STD_I16LE_g)
+#define H5T_STD_I32BE (H5OPEN H5T_STD_I32BE_g)
+#define H5T_STD_I32LE (H5OPEN H5T_STD_I32LE_g)
+#define H5T_STD_I64BE (H5OPEN H5T_STD_I64BE_g)
+#define H5T_STD_I64LE (H5OPEN H5T_STD_I64LE_g)
+#define H5T_STD_U8BE (H5OPEN H5T_STD_U8BE_g)
+#define H5T_STD_U8LE (H5OPEN H5T_STD_U8LE_g)
+#define H5T_STD_U16BE (H5OPEN H5T_STD_U16BE_g)
+#define H5T_STD_U16LE (H5OPEN H5T_STD_U16LE_g)
+#define H5T_STD_U32BE (H5OPEN H5T_STD_U32BE_g)
+#define H5T_STD_U32LE (H5OPEN H5T_STD_U32LE_g)
+#define H5T_STD_U64BE (H5OPEN H5T_STD_U64BE_g)
+#define H5T_STD_U64LE (H5OPEN H5T_STD_U64LE_g)
+#define H5T_STD_B8BE (H5OPEN H5T_STD_B8BE_g)
+#define H5T_STD_B8LE (H5OPEN H5T_STD_B8LE_g)
+#define H5T_STD_B16BE (H5OPEN H5T_STD_B16BE_g)
+#define H5T_STD_B16LE (H5OPEN H5T_STD_B16LE_g)
+#define H5T_STD_B32BE (H5OPEN H5T_STD_B32BE_g)
+#define H5T_STD_B32LE (H5OPEN H5T_STD_B32LE_g)
+#define H5T_STD_B64BE (H5OPEN H5T_STD_B64BE_g)
+#define H5T_STD_B64LE (H5OPEN H5T_STD_B64LE_g)
+#define H5T_STD_REF_OBJ (H5OPEN H5T_STD_REF_OBJ_g)
+#define H5T_STD_REF_DSETREG (H5OPEN H5T_STD_REF_DSETREG_g)
+H5_DLLVAR hid_t H5T_STD_I8BE_g;
+H5_DLLVAR hid_t H5T_STD_I8LE_g;
+H5_DLLVAR hid_t H5T_STD_I16BE_g;
+H5_DLLVAR hid_t H5T_STD_I16LE_g;
+H5_DLLVAR hid_t H5T_STD_I32BE_g;
+H5_DLLVAR hid_t H5T_STD_I32LE_g;
+H5_DLLVAR hid_t H5T_STD_I64BE_g;
+H5_DLLVAR hid_t H5T_STD_I64LE_g;
+H5_DLLVAR hid_t H5T_STD_U8BE_g;
+H5_DLLVAR hid_t H5T_STD_U8LE_g;
+H5_DLLVAR hid_t H5T_STD_U16BE_g;
+H5_DLLVAR hid_t H5T_STD_U16LE_g;
+H5_DLLVAR hid_t H5T_STD_U32BE_g;
+H5_DLLVAR hid_t H5T_STD_U32LE_g;
+H5_DLLVAR hid_t H5T_STD_U64BE_g;
+H5_DLLVAR hid_t H5T_STD_U64LE_g;
+H5_DLLVAR hid_t H5T_STD_B8BE_g;
+H5_DLLVAR hid_t H5T_STD_B8LE_g;
+H5_DLLVAR hid_t H5T_STD_B16BE_g;
+H5_DLLVAR hid_t H5T_STD_B16LE_g;
+H5_DLLVAR hid_t H5T_STD_B32BE_g;
+H5_DLLVAR hid_t H5T_STD_B32LE_g;
+H5_DLLVAR hid_t H5T_STD_B64BE_g;
+H5_DLLVAR hid_t H5T_STD_B64LE_g;
+H5_DLLVAR hid_t H5T_STD_REF_OBJ_g;
+H5_DLLVAR hid_t H5T_STD_REF_DSETREG_g;
+
+/*
+ * Types which are particular to Unix.
+ */
+#define H5T_UNIX_D32BE (H5OPEN H5T_UNIX_D32BE_g)
+#define H5T_UNIX_D32LE (H5OPEN H5T_UNIX_D32LE_g)
+#define H5T_UNIX_D64BE (H5OPEN H5T_UNIX_D64BE_g)
+#define H5T_UNIX_D64LE (H5OPEN H5T_UNIX_D64LE_g)
+H5_DLLVAR hid_t H5T_UNIX_D32BE_g;
+H5_DLLVAR hid_t H5T_UNIX_D32LE_g;
+H5_DLLVAR hid_t H5T_UNIX_D64BE_g;
+H5_DLLVAR hid_t H5T_UNIX_D64LE_g;
+
+/*
+ * Types particular to the C language. String types use `bytes' instead
+ * of `bits' as their size.
+ */
+#define H5T_C_S1 (H5OPEN H5T_C_S1_g)
+H5_DLLVAR hid_t H5T_C_S1_g;
+
+/*
+ * Types particular to Fortran.
+ */
+#define H5T_FORTRAN_S1 (H5OPEN H5T_FORTRAN_S1_g)
+H5_DLLVAR hid_t H5T_FORTRAN_S1_g;
+
+/*
+ * These types are for Intel CPU's. They are little endian with IEEE
+ * floating point.
+ */
+#define H5T_INTEL_I8 H5T_STD_I8LE
+#define H5T_INTEL_I16 H5T_STD_I16LE
+#define H5T_INTEL_I32 H5T_STD_I32LE
+#define H5T_INTEL_I64 H5T_STD_I64LE
+#define H5T_INTEL_U8 H5T_STD_U8LE
+#define H5T_INTEL_U16 H5T_STD_U16LE
+#define H5T_INTEL_U32 H5T_STD_U32LE
+#define H5T_INTEL_U64 H5T_STD_U64LE
+#define H5T_INTEL_B8 H5T_STD_B8LE
+#define H5T_INTEL_B16 H5T_STD_B16LE
+#define H5T_INTEL_B32 H5T_STD_B32LE
+#define H5T_INTEL_B64 H5T_STD_B64LE
+#define H5T_INTEL_F32 H5T_IEEE_F32LE
+#define H5T_INTEL_F64 H5T_IEEE_F64LE
+
+/*
+ * These types are for DEC Alpha CPU's. They are little endian with IEEE
+ * floating point.
+ */
+#define H5T_ALPHA_I8 H5T_STD_I8LE
+#define H5T_ALPHA_I16 H5T_STD_I16LE
+#define H5T_ALPHA_I32 H5T_STD_I32LE
+#define H5T_ALPHA_I64 H5T_STD_I64LE
+#define H5T_ALPHA_U8 H5T_STD_U8LE
+#define H5T_ALPHA_U16 H5T_STD_U16LE
+#define H5T_ALPHA_U32 H5T_STD_U32LE
+#define H5T_ALPHA_U64 H5T_STD_U64LE
+#define H5T_ALPHA_B8 H5T_STD_B8LE
+#define H5T_ALPHA_B16 H5T_STD_B16LE
+#define H5T_ALPHA_B32 H5T_STD_B32LE
+#define H5T_ALPHA_B64 H5T_STD_B64LE
+#define H5T_ALPHA_F32 H5T_IEEE_F32LE
+#define H5T_ALPHA_F64 H5T_IEEE_F64LE
+
+/*
+ * These types are for MIPS cpu's commonly used in SGI systems. They are big
+ * endian with IEEE floating point.
+ */
+#define H5T_MIPS_I8 H5T_STD_I8BE
+#define H5T_MIPS_I16 H5T_STD_I16BE
+#define H5T_MIPS_I32 H5T_STD_I32BE
+#define H5T_MIPS_I64 H5T_STD_I64BE
+#define H5T_MIPS_U8 H5T_STD_U8BE
+#define H5T_MIPS_U16 H5T_STD_U16BE
+#define H5T_MIPS_U32 H5T_STD_U32BE
+#define H5T_MIPS_U64 H5T_STD_U64BE
+#define H5T_MIPS_B8 H5T_STD_B8BE
+#define H5T_MIPS_B16 H5T_STD_B16BE
+#define H5T_MIPS_B32 H5T_STD_B32BE
+#define H5T_MIPS_B64 H5T_STD_B64BE
+#define H5T_MIPS_F32 H5T_IEEE_F32BE
+#define H5T_MIPS_F64 H5T_IEEE_F64BE
+
+/*
+ * The VAX floating point types (i.e. in VAX byte order)
+ */
+#define H5T_VAX_F32 (H5OPEN H5T_VAX_F32_g)
+#define H5T_VAX_F64 (H5OPEN H5T_VAX_F64_g)
+H5_DLLVAR hid_t H5T_VAX_F32_g;
+H5_DLLVAR hid_t H5T_VAX_F64_g;
+
+/*
+ * The predefined native types. These are the types detected by H5detect and
+ * they violate the naming scheme a little. Instead of a class name,
+ * precision and byte order as the last component, they have a C-like type
+ * name. If the type begins with `U' then it is the unsigned version of the
+ * integer type; other integer types are signed. The type LLONG corresponds
+ * to C's `long long' and LDOUBLE is `long double' (these types might be the
+ * same as `LONG' and `DOUBLE' respectively).
+ */
+#define H5T_NATIVE_CHAR (CHAR_MIN?H5T_NATIVE_SCHAR:H5T_NATIVE_UCHAR)
+#define H5T_NATIVE_SCHAR (H5OPEN H5T_NATIVE_SCHAR_g)
+#define H5T_NATIVE_UCHAR (H5OPEN H5T_NATIVE_UCHAR_g)
+#define H5T_NATIVE_SHORT (H5OPEN H5T_NATIVE_SHORT_g)
+#define H5T_NATIVE_USHORT (H5OPEN H5T_NATIVE_USHORT_g)
+#define H5T_NATIVE_INT (H5OPEN H5T_NATIVE_INT_g)
+#define H5T_NATIVE_UINT (H5OPEN H5T_NATIVE_UINT_g)
+#define H5T_NATIVE_LONG (H5OPEN H5T_NATIVE_LONG_g)
+#define H5T_NATIVE_ULONG (H5OPEN H5T_NATIVE_ULONG_g)
+#define H5T_NATIVE_LLONG (H5OPEN H5T_NATIVE_LLONG_g)
+#define H5T_NATIVE_ULLONG (H5OPEN H5T_NATIVE_ULLONG_g)
+#define H5T_NATIVE_FLOAT (H5OPEN H5T_NATIVE_FLOAT_g)
+#define H5T_NATIVE_DOUBLE (H5OPEN H5T_NATIVE_DOUBLE_g)
+#if H5_SIZEOF_LONG_DOUBLE !=0
+#define H5T_NATIVE_LDOUBLE (H5OPEN H5T_NATIVE_LDOUBLE_g)
+#endif
+#define H5T_NATIVE_B8 (H5OPEN H5T_NATIVE_B8_g)
+#define H5T_NATIVE_B16 (H5OPEN H5T_NATIVE_B16_g)
+#define H5T_NATIVE_B32 (H5OPEN H5T_NATIVE_B32_g)
+#define H5T_NATIVE_B64 (H5OPEN H5T_NATIVE_B64_g)
+#define H5T_NATIVE_OPAQUE (H5OPEN H5T_NATIVE_OPAQUE_g)
+#define H5T_NATIVE_HADDR (H5OPEN H5T_NATIVE_HADDR_g)
+#define H5T_NATIVE_HSIZE (H5OPEN H5T_NATIVE_HSIZE_g)
+#define H5T_NATIVE_HSSIZE (H5OPEN H5T_NATIVE_HSSIZE_g)
+#define H5T_NATIVE_HERR (H5OPEN H5T_NATIVE_HERR_g)
+#define H5T_NATIVE_HBOOL (H5OPEN H5T_NATIVE_HBOOL_g)
+H5_DLLVAR hid_t H5T_NATIVE_SCHAR_g;
+H5_DLLVAR hid_t H5T_NATIVE_UCHAR_g;
+H5_DLLVAR hid_t H5T_NATIVE_SHORT_g;
+H5_DLLVAR hid_t H5T_NATIVE_USHORT_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_g;
+H5_DLLVAR hid_t H5T_NATIVE_LONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_ULONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_LLONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_ULLONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_FLOAT_g;
+H5_DLLVAR hid_t H5T_NATIVE_DOUBLE_g;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+H5_DLLVAR hid_t H5T_NATIVE_LDOUBLE_g;
+#endif
+H5_DLLVAR hid_t H5T_NATIVE_B8_g;
+H5_DLLVAR hid_t H5T_NATIVE_B16_g;
+H5_DLLVAR hid_t H5T_NATIVE_B32_g;
+H5_DLLVAR hid_t H5T_NATIVE_B64_g;
+H5_DLLVAR hid_t H5T_NATIVE_OPAQUE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HADDR_g;
+H5_DLLVAR hid_t H5T_NATIVE_HSIZE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HSSIZE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HERR_g;
+H5_DLLVAR hid_t H5T_NATIVE_HBOOL_g;
+
+/* C9x integer types */
+#define H5T_NATIVE_INT8 (H5OPEN H5T_NATIVE_INT8_g)
+#define H5T_NATIVE_UINT8 (H5OPEN H5T_NATIVE_UINT8_g)
+#define H5T_NATIVE_INT_LEAST8 (H5OPEN H5T_NATIVE_INT_LEAST8_g)
+#define H5T_NATIVE_UINT_LEAST8 (H5OPEN H5T_NATIVE_UINT_LEAST8_g)
+#define H5T_NATIVE_INT_FAST8 (H5OPEN H5T_NATIVE_INT_FAST8_g)
+#define H5T_NATIVE_UINT_FAST8 (H5OPEN H5T_NATIVE_UINT_FAST8_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT8_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST8_g;
+
+#define H5T_NATIVE_INT16 (H5OPEN H5T_NATIVE_INT16_g)
+#define H5T_NATIVE_UINT16 (H5OPEN H5T_NATIVE_UINT16_g)
+#define H5T_NATIVE_INT_LEAST16 (H5OPEN H5T_NATIVE_INT_LEAST16_g)
+#define H5T_NATIVE_UINT_LEAST16 (H5OPEN H5T_NATIVE_UINT_LEAST16_g)
+#define H5T_NATIVE_INT_FAST16 (H5OPEN H5T_NATIVE_INT_FAST16_g)
+#define H5T_NATIVE_UINT_FAST16 (H5OPEN H5T_NATIVE_UINT_FAST16_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT16_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST16_g;
+
+#define H5T_NATIVE_INT32 (H5OPEN H5T_NATIVE_INT32_g)
+#define H5T_NATIVE_UINT32 (H5OPEN H5T_NATIVE_UINT32_g)
+#define H5T_NATIVE_INT_LEAST32 (H5OPEN H5T_NATIVE_INT_LEAST32_g)
+#define H5T_NATIVE_UINT_LEAST32 (H5OPEN H5T_NATIVE_UINT_LEAST32_g)
+#define H5T_NATIVE_INT_FAST32 (H5OPEN H5T_NATIVE_INT_FAST32_g)
+#define H5T_NATIVE_UINT_FAST32 (H5OPEN H5T_NATIVE_UINT_FAST32_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT32_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST32_g;
+
+#define H5T_NATIVE_INT64 (H5OPEN H5T_NATIVE_INT64_g)
+#define H5T_NATIVE_UINT64 (H5OPEN H5T_NATIVE_UINT64_g)
+#define H5T_NATIVE_INT_LEAST64 (H5OPEN H5T_NATIVE_INT_LEAST64_g)
+#define H5T_NATIVE_UINT_LEAST64 (H5OPEN H5T_NATIVE_UINT_LEAST64_g)
+#define H5T_NATIVE_INT_FAST64 (H5OPEN H5T_NATIVE_INT_FAST64_g)
+#define H5T_NATIVE_UINT_FAST64 (H5OPEN H5T_NATIVE_UINT_FAST64_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT64_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST64_g;
+
+/* Operations defined on all datatypes */
+H5_DLL hid_t H5Tcreate(H5T_class_t type, size_t size);
+H5_DLL hid_t H5Tcopy(hid_t type_id);
+H5_DLL herr_t H5Tclose(hid_t type_id);
+H5_DLL htri_t H5Tequal(hid_t type1_id, hid_t type2_id);
+H5_DLL herr_t H5Tlock(hid_t type_id);
+H5_DLL herr_t H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id);
+H5_DLL hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id);
+H5_DLL herr_t H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id);
+H5_DLL hid_t H5Tget_create_plist(hid_t type_id);
+H5_DLL htri_t H5Tcommitted(hid_t type_id);
+H5_DLL herr_t H5Tencode(hid_t obj_id, void *buf, size_t *nalloc);
+H5_DLL hid_t H5Tdecode(const void *buf);
+
+/* Operations defined on compound datatypes */
+H5_DLL herr_t H5Tinsert(hid_t parent_id, const char *name, size_t offset,
+ hid_t member_id);
+H5_DLL herr_t H5Tpack(hid_t type_id);
+
+/* Operations defined on enumeration datatypes */
+H5_DLL hid_t H5Tenum_create(hid_t base_id);
+H5_DLL herr_t H5Tenum_insert(hid_t type, const char *name, const void *value);
+H5_DLL herr_t H5Tenum_nameof(hid_t type, const void *value, char *name/*out*/,
+ size_t size);
+H5_DLL herr_t H5Tenum_valueof(hid_t type, const char *name,
+ void *value/*out*/);
+
+/* Operations defined on variable-length datatypes */
+H5_DLL hid_t H5Tvlen_create(hid_t base_id);
+
+/* Operations defined on array datatypes */
+H5_DLL hid_t H5Tarray_create2(hid_t base_id, unsigned ndims,
+ const hsize_t dim[/* ndims */]);
+H5_DLL int H5Tget_array_ndims(hid_t type_id);
+H5_DLL int H5Tget_array_dims2(hid_t type_id, hsize_t dims[]);
+
+/* Operations defined on opaque datatypes */
+H5_DLL herr_t H5Tset_tag(hid_t type, const char *tag);
+H5_DLL char *H5Tget_tag(hid_t type);
+
+/* Querying property values */
+H5_DLL hid_t H5Tget_super(hid_t type);
+H5_DLL H5T_class_t H5Tget_class(hid_t type_id);
+H5_DLL htri_t H5Tdetect_class(hid_t type_id, H5T_class_t cls);
+H5_DLL size_t H5Tget_size(hid_t type_id);
+H5_DLL H5T_order_t H5Tget_order(hid_t type_id);
+H5_DLL size_t H5Tget_precision(hid_t type_id);
+H5_DLL int H5Tget_offset(hid_t type_id);
+H5_DLL herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb/*out*/,
+ H5T_pad_t *msb/*out*/);
+H5_DLL H5T_sign_t H5Tget_sign(hid_t type_id);
+H5_DLL herr_t H5Tget_fields(hid_t type_id, size_t *spos/*out*/,
+ size_t *epos/*out*/, size_t *esize/*out*/,
+ size_t *mpos/*out*/, size_t *msize/*out*/);
+H5_DLL size_t H5Tget_ebias(hid_t type_id);
+H5_DLL H5T_norm_t H5Tget_norm(hid_t type_id);
+H5_DLL H5T_pad_t H5Tget_inpad(hid_t type_id);
+H5_DLL H5T_str_t H5Tget_strpad(hid_t type_id);
+H5_DLL int H5Tget_nmembers(hid_t type_id);
+H5_DLL char *H5Tget_member_name(hid_t type_id, unsigned membno);
+H5_DLL int H5Tget_member_index(hid_t type_id, const char *name);
+H5_DLL size_t H5Tget_member_offset(hid_t type_id, unsigned membno);
+H5_DLL H5T_class_t H5Tget_member_class(hid_t type_id, unsigned membno);
+H5_DLL hid_t H5Tget_member_type(hid_t type_id, unsigned membno);
+H5_DLL herr_t H5Tget_member_value(hid_t type_id, unsigned membno, void *value/*out*/);
+H5_DLL H5T_cset_t H5Tget_cset(hid_t type_id);
+H5_DLL htri_t H5Tis_variable_str(hid_t type_id);
+H5_DLL hid_t H5Tget_native_type(hid_t type_id, H5T_direction_t direction);
+
+/* Setting property values */
+H5_DLL herr_t H5Tset_size(hid_t type_id, size_t size);
+H5_DLL herr_t H5Tset_order(hid_t type_id, H5T_order_t order);
+H5_DLL herr_t H5Tset_precision(hid_t type_id, size_t prec);
+H5_DLL herr_t H5Tset_offset(hid_t type_id, size_t offset);
+H5_DLL herr_t H5Tset_pad(hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb);
+H5_DLL herr_t H5Tset_sign(hid_t type_id, H5T_sign_t sign);
+H5_DLL herr_t H5Tset_fields(hid_t type_id, size_t spos, size_t epos,
+ size_t esize, size_t mpos, size_t msize);
+H5_DLL herr_t H5Tset_ebias(hid_t type_id, size_t ebias);
+H5_DLL herr_t H5Tset_norm(hid_t type_id, H5T_norm_t norm);
+H5_DLL herr_t H5Tset_inpad(hid_t type_id, H5T_pad_t pad);
+H5_DLL herr_t H5Tset_cset(hid_t type_id, H5T_cset_t cset);
+H5_DLL herr_t H5Tset_strpad(hid_t type_id, H5T_str_t strpad);
+
+/* Type conversion database */
+H5_DLL herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id,
+ hid_t dst_id, H5T_conv_t func);
+H5_DLL herr_t H5Tunregister(H5T_pers_t pers, const char *name, hid_t src_id,
+ hid_t dst_id, H5T_conv_t func);
+H5_DLL H5T_conv_t H5Tfind(hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata);
+H5_DLL htri_t H5Tcompiler_conv(hid_t src_id, hid_t dst_id);
+H5_DLL herr_t H5Tconvert(hid_t src_id, hid_t dst_id, size_t nelmts,
+ void *buf, void *background, hid_t plist_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL herr_t H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id);
+H5_DLL hid_t H5Topen1(hid_t loc_id, const char *name);
+H5_DLL hid_t H5Tarray_create1(hid_t base_id, int ndims,
+ const hsize_t dim[/* ndims */],
+ const int perm[/* ndims */]);
+H5_DLL int H5Tget_array_dims1(hid_t type_id, hsize_t dims[], int perm[]);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Tpublic_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5VarLenType.h b/Resources/windows-libs/HDF5/include/H5VarLenType.h
new file mode 100644
index 0000000000000000000000000000000000000000..9ad2b40c64c86930f4466bc229f67c53bd7d425b
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5VarLenType.h
@@ -0,0 +1,53 @@
+// C++ informative line for the emacs editor: -*- C++ -*-
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+// Class VarLenType inherits from DataType and provides wrappers for
+// the HDF5 C's Variable-length Datatypes.
+
+#ifndef __H5VarLenType_H
+#define __H5VarLenType_H
+
+#ifndef H5_NO_NAMESPACE
+namespace H5 {
+#endif
+
+//! VarLenType operates on the HDF5 C's Variable-length Datatypes.
+class H5_DLLCPP VarLenType : public DataType {
+ public:
+ // Constructor that creates a variable-length datatype based
+ // on the specified base type.
+ VarLenType(const DataType* base_type);
+
+ ///\brief Returns this class name.
+ virtual H5std_string fromClass () const { return("VarLenType"); }
+
+ // Copy constructor: makes copy of the original object.
+ VarLenType( const VarLenType& original );
+
+ // Constructor that takes an existing id
+ VarLenType( const hid_t existing_id );
+
+ // Noop destructor
+ virtual ~VarLenType();
+
+ protected:
+ // Default constructor
+ VarLenType();
+};
+#ifndef H5_NO_NAMESPACE
+}
+#endif
+#endif // __H5VarLenType_H
diff --git a/Resources/windows-libs/HDF5/include/H5Zpkg.h b/Resources/windows-libs/HDF5/include/H5Zpkg.h
new file mode 100644
index 0000000000000000000000000000000000000000..b0df8561d7d9bd1f7da350ee8e347aa20d55b5e4
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Zpkg.h
@@ -0,0 +1,70 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5Z_PACKAGE
+#error "Do not include this file outside the H5Z package!"
+#endif
+
+#ifndef _H5Zpkg_H
+#define _H5Zpkg_H
+
+/* Include private header file */
+#include "H5Zprivate.h" /* Filter functions */
+
+
+#ifdef H5_HAVE_FILTER_DEFLATE
+/*
+ * Deflate filter
+ */
+H5_DLLVAR const H5Z_class2_t H5Z_DEFLATE[1];
+#endif /* H5_HAVE_FILTER_DEFLATE */
+
+#ifdef H5_HAVE_FILTER_SHUFFLE
+/*
+ * Shuffle filter
+ */
+H5_DLLVAR const H5Z_class2_t H5Z_SHUFFLE[1];
+#endif /* H5_HAVE_FILTER_SHUFFLE */
+
+#ifdef H5_HAVE_FILTER_FLETCHER32
+/*
+ * Fletcher32 filter
+ */
+H5_DLLVAR const H5Z_class2_t H5Z_FLETCHER32[1];
+#endif /* H5_HAVE_FILTER_FLETCHER32 */
+
+#ifdef H5_HAVE_FILTER_SZIP
+/*
+ * szip filter
+ */
+H5_DLLVAR H5Z_class2_t H5Z_SZIP[1];
+#endif /* H5_HAVE_FILTER_SZIP */
+
+#ifdef H5_HAVE_FILTER_NBIT
+/*
+ * nbit filter
+ */
+H5_DLLVAR H5Z_class2_t H5Z_NBIT[1];
+#endif /* H5_HAVE_FILTER_NBIT */
+
+#ifdef H5_HAVE_FILTER_SCALEOFFSET
+/*
+ * scaleoffset filter
+ */
+H5_DLLVAR H5Z_class2_t H5Z_SCALEOFFSET[1];
+#endif /* H5_HAVE_FILTER_SCALEOFFSET */
+
+#endif /* _H5Zpkg_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5Zpublic.h b/Resources/windows-libs/HDF5/include/H5Zpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..8daa5f490d32fb8af75f11fbb07d9e08008f16ea
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5Zpublic.h
@@ -0,0 +1,250 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Programmer: Robb Matzke <matzke@llnl.gov>
+ * Thursday, April 16, 1998
+ */
+
+#ifndef _H5Zpublic_H
+#define _H5Zpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*
+ * Filter identifiers. Values 0 through 255 are for filters defined by the
+ * HDF5 library. Values 256 through 511 are available for testing new
+ * filters. Subsequent values should be obtained from the HDF5 development
+ * team at hdf5dev@ncsa.uiuc.edu. These values will never change because they
+ * appear in the HDF5 files.
+ */
+typedef int H5Z_filter_t;
+
+/* Filter IDs */
+#define H5Z_FILTER_ERROR (-1) /*no filter */
+#define H5Z_FILTER_NONE 0 /*reserved indefinitely */
+#define H5Z_FILTER_DEFLATE 1 /*deflation like gzip */
+#define H5Z_FILTER_SHUFFLE 2 /*shuffle the data */
+#define H5Z_FILTER_FLETCHER32 3 /*fletcher32 checksum of EDC */
+#define H5Z_FILTER_SZIP 4 /*szip compression */
+#define H5Z_FILTER_NBIT 5 /*nbit compression */
+#define H5Z_FILTER_SCALEOFFSET 6 /*scale+offset compression */
+#define H5Z_FILTER_RESERVED 256 /*filter ids below this value are reserved for library use */
+
+#define H5Z_FILTER_MAX 65535 /*maximum filter id */
+
+/* General macros */
+#define H5Z_FILTER_ALL 0 /* Symbol to remove all filters in H5Premove_filter */
+#define H5Z_MAX_NFILTERS 32 /* Maximum number of filters allowed in a pipeline */
+ /* (should probably be allowed to be an
+ * unlimited amount, but currently each
+ * filter uses a bit in a 32-bit field,
+ * so the format would have to be
+ * changed to accomodate that)
+ */
+
+/* Flags for filter definition (stored) */
+#define H5Z_FLAG_DEFMASK 0x00ff /*definition flag mask */
+#define H5Z_FLAG_MANDATORY 0x0000 /*filter is mandatory */
+#define H5Z_FLAG_OPTIONAL 0x0001 /*filter is optional */
+
+/* Additional flags for filter invocation (not stored) */
+#define H5Z_FLAG_INVMASK 0xff00 /*invocation flag mask */
+#define H5Z_FLAG_REVERSE 0x0100 /*reverse direction; read */
+#define H5Z_FLAG_SKIP_EDC 0x0200 /*skip EDC filters for read */
+
+/* Special parameters for szip compression */
+/* [These are aliases for the similar definitions in szlib.h, which we can't
+ * include directly due to the duplication of various symbols with the zlib.h
+ * header file] */
+#define H5_SZIP_ALLOW_K13_OPTION_MASK 1
+#define H5_SZIP_CHIP_OPTION_MASK 2
+#define H5_SZIP_EC_OPTION_MASK 4
+#define H5_SZIP_NN_OPTION_MASK 32
+#define H5_SZIP_MAX_PIXELS_PER_BLOCK 32
+
+/* Macros for the shuffle filter */
+#define H5Z_SHUFFLE_USER_NPARMS 0 /* Number of parameters that users can set */
+#define H5Z_SHUFFLE_TOTAL_NPARMS 1 /* Total number of parameters for filter */
+
+/* Macros for the szip filter */
+#define H5Z_SZIP_USER_NPARMS 2 /* Number of parameters that users can set */
+#define H5Z_SZIP_TOTAL_NPARMS 4 /* Total number of parameters for filter */
+#define H5Z_SZIP_PARM_MASK 0 /* "User" parameter for option mask */
+#define H5Z_SZIP_PARM_PPB 1 /* "User" parameter for pixels-per-block */
+#define H5Z_SZIP_PARM_BPP 2 /* "Local" parameter for bits-per-pixel */
+#define H5Z_SZIP_PARM_PPS 3 /* "Local" parameter for pixels-per-scanline */
+
+/* Macros for the nbit filter */
+#define H5Z_NBIT_USER_NPARMS 0 /* Number of parameters that users can set */
+
+/* Macros for the scale offset filter */
+#define H5Z_SCALEOFFSET_USER_NPARMS 2 /* Number of parameters that users can set */
+
+
+/* Special parameters for ScaleOffset filter*/
+#define H5Z_SO_INT_MINBITS_DEFAULT 0
+typedef enum H5Z_SO_scale_type_t {
+ H5Z_SO_FLOAT_DSCALE = 0,
+ H5Z_SO_FLOAT_ESCALE = 1,
+ H5Z_SO_INT = 2
+} H5Z_SO_scale_type_t;
+
+/* Current version of the H5Z_class_t struct */
+#define H5Z_CLASS_T_VERS (1)
+
+/* Values to decide if EDC is enabled for reading data */
+typedef enum H5Z_EDC_t {
+ H5Z_ERROR_EDC = -1, /* error value */
+ H5Z_DISABLE_EDC = 0,
+ H5Z_ENABLE_EDC = 1,
+ H5Z_NO_EDC = 2 /* must be the last */
+} H5Z_EDC_t;
+
+/* Bit flags for H5Zget_filter_info */
+#define H5Z_FILTER_CONFIG_ENCODE_ENABLED (0x0001)
+#define H5Z_FILTER_CONFIG_DECODE_ENABLED (0x0002)
+
+/* Return values for filter callback function */
+typedef enum H5Z_cb_return_t {
+ H5Z_CB_ERROR = -1,
+ H5Z_CB_FAIL = 0, /* I/O should fail if filter fails. */
+ H5Z_CB_CONT = 1, /* I/O continues if filter fails. */
+ H5Z_CB_NO = 2
+} H5Z_cb_return_t;
+
+/* Filter callback function definition */
+typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf,
+ size_t buf_size, void* op_data);
+
+/* Structure for filter callback property */
+typedef struct H5Z_cb_t {
+ H5Z_filter_func_t func;
+ void* op_data;
+} H5Z_cb_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*
+ * Before a dataset gets created, the "can_apply" callbacks for any filters used
+ * in the dataset creation property list are called
+ * with the dataset's dataset creation property list, the dataset's datatype and
+ * a dataspace describing a chunk (for chunked dataset storage).
+ *
+ * The "can_apply" callback must determine if the combination of the dataset
+ * creation property list setting, the datatype and the dataspace represent a
+ * valid combination to apply this filter to. For example, some cases of
+ * invalid combinations may involve the filter not operating correctly on
+ * certain datatypes (or certain datatype sizes), or certain sizes of the chunk
+ * dataspace.
+ *
+ * The "can_apply" callback can be the NULL pointer, in which case, the library
+ * will assume that it can apply to any combination of dataset creation
+ * property list values, datatypes and dataspaces.
+ *
+ * The "can_apply" callback returns positive a valid combination, zero for an
+ * invalid combination and negative for an error.
+ */
+typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
+
+/*
+ * After the "can_apply" callbacks are checked for new datasets, the "set_local"
+ * callbacks for any filters used in the dataset creation property list are
+ * called. These callbacks receive the dataset's private copy of the dataset
+ * creation property list passed in to H5Dcreate (i.e. not the actual property
+ * list passed in to H5Dcreate) and the datatype ID passed in to H5Dcreate
+ * (which is not copied and should not be modified) and a dataspace describing
+ * the chunk (for chunked dataset storage) (which should also not be modified).
+ *
+ * The "set_local" callback must set any parameters that are specific to this
+ * dataset, based on the combination of the dataset creation property list
+ * values, the datatype and the dataspace. For example, some filters perform
+ * different actions based on different datatypes (or datatype sizes) or
+ * different number of dimensions or dataspace sizes.
+ *
+ * The "set_local" callback can be the NULL pointer, in which case, the library
+ * will assume that there are no dataset-specific settings for this filter.
+ *
+ * The "set_local" callback must return non-negative on success and negative
+ * for an error.
+ */
+typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
+
+/*
+ * A filter gets definition flags and invocation flags (defined above), the
+ * client data array and size defined when the filter was added to the
+ * pipeline, the size in bytes of the data on which to operate, and pointers
+ * to a buffer and its allocated size.
+ *
+ * The filter should store the result in the supplied buffer if possible,
+ * otherwise it can allocate a new buffer, freeing the original. The
+ * allocated size of the new buffer should be returned through the BUF_SIZE
+ * pointer and the new buffer through the BUF pointer.
+ *
+ * The return value from the filter is the number of bytes in the output
+ * buffer. If an error occurs then the function should return zero and leave
+ * all pointer arguments unchanged.
+ */
+typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts,
+ const unsigned int cd_values[], size_t nbytes,
+ size_t *buf_size, void **buf);
+
+/*
+ * The filter table maps filter identification numbers to structs that
+ * contain a pointers to the filter function and timing statistics.
+ */
+typedef struct H5Z_class2_t {
+ int version; /* Version number of the H5Z_class_t struct */
+ H5Z_filter_t id; /* Filter ID number */
+ unsigned encoder_present; /* Does this filter have an encoder? */
+ unsigned decoder_present; /* Does this filter have a decoder? */
+ const char *name; /* Comment for debugging */
+ H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
+ H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
+ H5Z_func_t filter; /* The actual filter function */
+} H5Z_class2_t;
+
+H5_DLL herr_t H5Zregister(const void *cls);
+H5_DLL herr_t H5Zunregister(H5Z_filter_t id);
+H5_DLL htri_t H5Zfilter_avail(H5Z_filter_t id);
+H5_DLL herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/*
+ * The filter table maps filter identification numbers to structs that
+ * contain a pointers to the filter function and timing statistics.
+ */
+typedef struct H5Z_class1_t {
+ H5Z_filter_t id; /* Filter ID number */
+ const char *name; /* Comment for debugging */
+ H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
+ H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
+ H5Z_func_t filter; /* The actual filter function */
+} H5Z_class1_t;
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5api_adpt.h b/Resources/windows-libs/HDF5/include/H5api_adpt.h
new file mode 100644
index 0000000000000000000000000000000000000000..845a9a0c9753f1451afb45018bc18d21e66dfebc
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5api_adpt.h
@@ -0,0 +1,424 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * H5api_adpt.h
+ * Used for the HDF5 dll project
+ * Created by Patrick Lu on 1/12/99
+ */
+#ifndef H5API_ADPT_H
+#define H5API_ADPT_H
+
+/* This will only be defined if HDF5 was built with CMake */
+#ifdef H5_BUILT_AS_DYNAMIC_LIB
+
+#if defined (hdf5_EXPORTS)
+ #define _HDF5DLL_
+#else
+ #define _HDF5USEDLL_
+#endif
+
+#if defined (hdf5_test_EXPORTS)
+ #define _HDF5TESTDLL_
+#else
+ #define _HDF5TESTUSEDLL_
+#endif
+
+#if defined (hdf5_tools_EXPORTS)
+ #define _HDF5TOOLSDLL_
+#else
+ #define _HDF5TOOLSUSEDLL_
+#endif
+
+#if defined (hdf5_cpp_EXPORTS)
+ #define HDF5_CPPDLL_EXPORTS
+#else
+ #define HDF5CPP_USEDLL
+#endif
+
+#if defined (hdf5_hl_EXPORTS)
+ #define _HDF5_HLDLL_EXPORTS_
+#else
+ #define _HDF5USEHLDLL_
+#endif
+
+#if defined (hdf5_hl_cpp_EXPORTS)
+ #define HDF5_HL_CPPDLL_EXPORTS
+#else
+ #define HDF5USE_HLCPPDLL
+#endif
+
+#if defined (hdf5_f90cstub_EXPORTS)
+ #define HDF5FORT_CSTUB_DLL_EXPORTS
+#else
+ #define HDF5FORT_CSTUB_USEDLL
+#endif
+
+#if defined (hdf5_test_f90cstub_EXPORTS)
+ #define HDF5FORTTEST_CSTUB_DLL_EXPORTS
+#endif
+
+#if defined (hdf5_hl_f90cstub_EXPORTS)
+ #define HDF5_HL_F90CSTUBDLL_EXPORTS
+#endif
+
+#if defined(hdf5_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLL __declspec(dllexport)
+ #define H5_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLL __attribute__ ((visibility("default")))
+ #define H5_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLL __declspec(dllimport)
+ #define H5_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLL __attribute__ ((visibility("default")))
+ #define H5_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_DLL
+ #define H5_DLL
+ #define H5_DLLVAR extern
+#endif /* _HDF5DLL_ */
+
+#if defined(hdf5_test_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TEST_DLL __declspec(dllexport)
+ #define H5TEST_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TEST_DLL __attribute__ ((visibility("default")))
+ #define H5TEST_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TEST_DLL __declspec(dllimport)
+ #define H5TEST_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TEST_DLL __attribute__ ((visibility("default")))
+ #define H5TEST_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5TEST_DLL
+ #define H5TEST_DLL
+ #define H5TEST_DLLVAR extern
+#endif /* H5TEST_DLL */
+
+#if defined(hdf5_tools_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TOOLS_DLL __declspec(dllexport)
+ #define H5TOOLS_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TOOLS_DLL __attribute__ ((visibility("default")))
+ #define H5TOOLS_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TOOLS_DLL __declspec(dllimport)
+ #define H5TOOLS_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TOOLS_DLL __attribute__ ((visibility("default")))
+ #define H5TOOLS_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5TOOLS_DLL
+ #define H5TOOLS_DLL
+ #define H5TOOLS_DLLVAR extern
+#endif /* H5TOOLS_DLL */
+
+#if defined(hdf5_cpp_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLLCPP __declspec(dllexport)
+ #define H5_DLLCPPVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLLCPP __attribute__ ((visibility("default")))
+ #define H5_DLLCPPVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLLCPP __declspec(dllimport)
+ #define H5_DLLCPPVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLLCPP __attribute__ ((visibility("default")))
+ #define H5_DLLCPPVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_DLLCPP
+ #define H5_DLLCPP
+ #define H5_DLLCPPVAR extern
+#endif /* H5_DLLCPP */
+
+#if defined(hdf5_hl_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLDLL __declspec(dllexport)
+ #define H5_HLDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLDLL __attribute__ ((visibility("default")))
+ #define H5_HLDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLDLL __declspec(dllimport)
+ #define H5_HLDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLDLL __attribute__ ((visibility("default")))
+ #define H5_HLDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_HLDLL
+ #define H5_HLDLL
+ #define H5_HLDLLVAR extern
+#endif /* H5_HLDLL */
+
+#if defined(hdf5_hl_cpp_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLCPPDLL __declspec(dllexport)
+ #define H5_HLCPPDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLCPPDLL __attribute__ ((visibility("default")))
+ #define H5_HLCPPDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLCPPDLL __declspec(dllimport)
+ #define H5_HLCPPDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLCPPDLL __attribute__ ((visibility("default")))
+ #define H5_HLCPPDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_HLCPPDLL
+ #define H5_HLCPPDLL
+ #define H5_HLCPPDLLVAR extern
+#endif /* H5_HLCPPDLL */
+
+#if defined(hdf5_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCDLL __declspec(dllexport)
+ #define H5_FCDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCDLL __attribute__ ((visibility("default")))
+ #define H5_FCDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCDLL __declspec(dllimport)
+ #define H5_FCDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCDLL __attribute__ ((visibility("default")))
+ #define H5_FCDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_FCDLL
+ #define H5_FCDLL
+ #define H5_FCDLLVAR extern
+#endif /* H5_FCDLL */
+
+#if defined(hdf5_test_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCTESTDLL __declspec(dllexport)
+ #define H5_FCTESTDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCTESTDLL __attribute__ ((visibility("default")))
+ #define H5_FCTESTDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCTESTDLL __declspec(dllimport)
+ #define H5_FCTESTDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCTESTDLL __attribute__ ((visibility("default")))
+ #define H5_FCTESTDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_FCTESTDLL
+ #define H5_FCTESTDLL
+ #define H5_FCTESTDLLVAR extern
+#endif /* H5_FCTESTDLL */
+
+#if defined(hdf5_hl_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define HDF5_HL_F90CSTUBDLL __declspec(dllexport)
+ #define HDF5_HL_F90CSTUBDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define HDF5_HL_F90CSTUBDLL __attribute__ ((visibility("default")))
+ #define HDF5_HL_F90CSTUBDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define HDF5_HL_F90CSTUBDLL __declspec(dllimport)
+ #define HDF5_HL_F90CSTUBDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define HDF5_HL_F90CSTUBDLL __attribute__ ((visibility("default")))
+ #define HDF5_HL_F90CSTUBDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef HDF5_HL_F90CSTUBDLL
+ #define HDF5_HL_F90CSTUBDLL
+ #define HDF5_HL_F90CSTUBDLLVAR extern
+#endif /* HDF5_HL_F90CSTUBDLL */
+
+#elif defined(H5_BUILT_AS_STATIC_LIB)
+ #define H5_DLL
+ #define H5_HLDLL
+ #define H5_HLCPPDLL
+ #define HDF5_HL_F90CSTUBDLL
+ #define H5_DLLVAR extern
+ #define H5_DLLCPP
+ #define H5TEST_DLL
+ #define H5TEST_DLLVAR extern
+ #define H5TOOLS_DLL
+ #define H5TOOLS_DLLVAR extern
+ #define H5_FCDLL
+ #define H5_FCDLLVAR extern
+ #define H5_FCTESTDLL
+ #define H5_FCTESTDLLVAR extern
+
+#else
+/* This is the original HDFGroup defined preprocessor code which should still work
+ * with the VS projects that are maintained by "The HDF Group"
+ * The Visual Studio project files will not be supported in the next major release of 1.10.
+ */
+
+#if defined(H5_HAVE_WIN32_API)
+
+#if defined(_HDF5DLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_DLL __declspec(dllexport)
+#define H5_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5USEDLL_)
+#define H5_DLL __declspec(dllimport)
+#define H5_DLLVAR __declspec(dllimport)
+#else
+#define H5_DLL
+#define H5_DLLVAR extern
+#endif /* _HDF5DLL_ */
+
+#if defined(_HDF5TESTDLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5TEST_DLL __declspec(dllexport)
+#define H5TEST_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5TESTUSEDLL_)
+#define H5TEST_DLL __declspec(dllimport)
+#define H5TEST_DLLVAR __declspec(dllimport)
+#else
+#define H5TEST_DLL
+#define H5TEST_DLLVAR extern
+#endif /* _HDF5TESTDLL_ */
+
+#if defined(_HDF5TOOLSDLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5TOOLS_DLL __declspec(dllexport)
+#define H5TOOLS_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5TOOLSUSEDLL_)
+#define H5TOOLS_DLL __declspec(dllimport)
+#define H5TOOLS_DLLVAR __declspec(dllimport)
+#else
+#define H5TOOLS_DLL
+#define H5TOOLS_DLLVAR extern
+#endif /* _HDF5TOOLSDLL_ */
+
+#if defined(_HDF5_HLDLL_EXPORTS_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_HLDLL __declspec(dllexport)
+#elif defined(_HDF5USEHLDLL_)
+#define H5_HLDLL __declspec(dllimport)
+#else
+#define H5_HLDLL
+#endif /* _HDF5_HLDLL_EXPORTS */
+
+#if defined(HDF5_HL_CPPDLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_HLCPPDLL __declspec(dllexport)
+#elif defined(HDF5USE_HLCPPDLL)
+#define H5_HLCPPDLL __declspec(dllimport)
+#else
+#define H5_HLCPPDLL
+#endif /*HDF5_HL_CPPDLL_EXPORTS*/
+
+#if defined(HDF5_HL_F90CSTUBDLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define HDF5_HL_F90CSTUBDLL __declspec(dllexport)
+#elif defined(HDF5USE_HLF90CSTUBDLL)
+#define HDF5_HL_F90CSTUBDLL __declspec(dllimport)
+#else
+#define HDF5_HL_F90CSTUBDLL
+#endif /*HDF5_HL_F90CSTUBDLL_EXPORTS*/
+
+
+#if defined(HDF5FORT_CSTUB_DLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_FCDLL __declspec(dllexport)
+#define H5_FCDLLVAR extern __declspec(dllexport)
+#elif defined(HDF5FORT_CSTUB_USEDLL)
+#define H5_FCDLL __declspec(dllimport)
+#define H5_FCDLLVAR __declspec(dllimport)
+#else
+#define H5_FCDLL
+#define H5_FCDLLVAR extern
+#endif /* _HDF5_FORTRANDLL_EXPORTS_ */
+
+#if defined(HDF5FORTTEST_CSTUB_DLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_FCTESTDLL __declspec(dllexport)
+#define H5_FCTESTDLLVAR extern __declspec(dllexport)
+#elif defined(HDF5FORTTEST_CSTUB_USEDLL)
+#define H5_FCTESTDLL __declspec(dllimport)
+#define H5_FCTESTDLLVAR __declspec(dllimport)
+#else
+#define H5_FCTESTDLL
+#define H5_FCTESTDLLVAR extern
+#endif /* _HDF5_FORTRANDLL_EXPORTS_ */
+
+/* Added to export or to import C++ APIs - BMR (02-15-2002) */
+#if defined(HDF5_CPPDLL_EXPORTS) /* this name is generated at creation */
+#define H5_DLLCPP __declspec(dllexport)
+#elif defined(HDF5CPP_USEDLL)
+#define H5_DLLCPP __declspec(dllimport)
+#else
+#define H5_DLLCPP
+#endif /* HDF5_CPPDLL_EXPORTS */
+
+#else /*H5_HAVE_WIN32_API*/
+#define H5_DLL
+#define H5_HLDLL
+#define H5_HLCPPDLL
+#define HDF5_HL_F90CSTUBDLL
+#define H5_DLLVAR extern
+#define H5_DLLCPP
+#define H5TEST_DLL
+#define H5TEST_DLLVAR extern
+#define H5TOOLS_DLL
+#define H5TOOLS_DLLVAR extern
+#define H5_FCDLL
+#define H5_FCDLLVAR extern
+#define H5_FCTESTDLL
+#define H5_FCTESTDLLVAR extern
+#endif /*H5_HAVE_WIN32_API*/
+
+#endif /* H5API_ADPT_H */
+
+#endif /* */
diff --git a/Resources/windows-libs/HDF5/include/H5f90.h b/Resources/windows-libs/HDF5/include/H5f90.h
new file mode 100644
index 0000000000000000000000000000000000000000..c45cfcbf043f4e5289b11b3c11108fb8e3c4c04b
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5f90.h
@@ -0,0 +1,31 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#ifndef _H5f90_H
+#define _H5f90_H
+
+#include "hdf5.h"
+#include "H5private.h"
+#include "H5f90i.h"
+#include "H5f90proto.h"
+
+/* Constants used in H5Rff.f90 and H5Rf.c files */
+#define REF_REG_BUF_LEN_F 3
+
+/* Constants used in H5Gf.c files */
+#define OBJECT_NAMELEN_DEFAULT_F -1
+#define H5_MAX(a,b) (((a)>(b)) ? (a) : (b))
+#endif /* _H5f90_H */
diff --git a/Resources/windows-libs/HDF5/include/H5f90i.h b/Resources/windows-libs/HDF5/include/H5f90i.h
new file mode 100644
index 0000000000000000000000000000000000000000..f3c0160d384ac37e1fe3b13833247988b60fd0a1
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5f90i.h
@@ -0,0 +1,43 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#ifndef _H5f90i_H
+#define _H5f90i_H
+
+/*
+ * Include generated header. This header defines integer types,
+ * so this file only needs to define _fcd.
+ */
+#include "H5f90i_gen.h"
+
+/* Define _fcd. These are the same on every system
+ * but UNICOS.
+ */
+#define _fcdtocp(desc) (desc)
+
+#if (defined (UNICOS) || defined (_UNICOS)) && !defined(__crayx1)
+
+#include <fortran.h>
+
+/*typedef char* _fcd;*/
+
+#else
+
+typedef char *_fcd;
+
+#endif
+
+#endif /* _H5f90i_H */
diff --git a/Resources/windows-libs/HDF5/include/H5f90i_gen.h b/Resources/windows-libs/HDF5/include/H5f90i_gen.h
new file mode 100644
index 0000000000000000000000000000000000000000..07b46f97b57e06472ebf68129dc458faad932628
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5f90i_gen.h
@@ -0,0 +1,48 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#ifndef _H5f90i_gen_H
+#define _H5f90i_gen_H
+
+/* This file is automatically generated by H5match_types.c at build time. */
+
+#include "H5public.h"
+
+#define c_int_1 char
+#define c_int_2 short
+#define c_int_4 long
+#define c_int_8 long long
+#define c_float_4 float
+#define c_float_8 long double
+
+typedef c_int_8 haddr_t_f;
+typedef c_int_8 hsize_t_f;
+typedef c_int_8 hssize_t_f;
+typedef c_int_4 off_t_f;
+typedef c_int_8 size_t_f;
+typedef c_int_4 int_f;
+typedef c_int_1 int_1_f;
+typedef c_int_2 int_2_f;
+typedef c_int_4 int_4_f;
+typedef c_int_8 int_8_f;
+typedef c_float_4 real_4_f;
+typedef c_float_8 real_8_f;
+typedef c_float_8 real_16_f;
+typedef c_int_4 hid_t_f;
+typedef c_float_4 real_f;
+typedef c_float_8 double_f;
+
+#endif /* _H5f90i_gen_H */
diff --git a/Resources/windows-libs/HDF5/include/H5f90proto.h b/Resources/windows-libs/HDF5/include/H5f90proto.h
new file mode 100644
index 0000000000000000000000000000000000000000..a0a4f64ccf59cd7a30150575ed38b47f70dbd760
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5f90proto.h
@@ -0,0 +1,1346 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#ifndef _H5f90proto_H
+#define _H5f90proto_H
+
+#include "H5public.h"
+
+H5_FCDLL char * HD5f2cstring (_fcd fdesc, size_t len);
+H5_FCDLL void HD5packFstring(char *src, char *dest, size_t len);
+
+#ifdef H5_VMS
+#define H5_FC_FUNC_(name, NAME) NAME
+#endif /*H5_VMS*/
+
+/*
+ * Storage info struct used by H5O_info_t and H5F_info_t
+ * interoperable with Fortran.
+ */
+typedef struct H5_ih_info_t_f {
+ hsize_t index_size; /* btree and/or list */
+ hsize_t heap_size;
+} H5_ih_info_t_f;
+
+/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ * interoperable with Fortran.
+ */
+typedef struct H5O_hdr_info_t_f {
+ int_f version; /* Version number of header format in file */
+ int_f nmesgs; /* Number of object header messages */
+ int_f nchunks; /* Number of object header chunks */
+ int_f flags; /* Object header status flags */
+ struct {
+ hsize_t total; /* Total space for storing object header in file */
+ hsize_t meta; /* Space within header for object header metadata information */
+ hsize_t mesg; /* Space within header for actual message information */
+ hsize_t free; /* Free space within object header */
+ } space;
+ struct {
+ uint64_t present; /* Flags to indicate presence of message type in header */
+ uint64_t shared; /* Flags to indicate message type is shared in header */
+ } mesg;
+} H5O_hdr_info_t_f;
+
+/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ * interoperable with Fortran.
+ */
+typedef struct H5O_info_t_f {
+ unsigned long fileno; /* File number that object is located in */
+ haddr_t_f addr; /* Object address in file */
+ int type; /* Basic object type (group, dataset, etc.) */
+ int_f rc; /* Reference count of object */
+ int_f atime[8]; /* Access time */
+ int_f mtime[8]; /* Modification time */
+ int_f ctime[8]; /* Change time */
+ int_f btime[8]; /* Birth time */
+ hsize_t num_attrs; /* # of attributes attached to object */
+ H5O_hdr_info_t_f hdr; /* Object header information */
+ /* Extra metadata storage for obj & attributes */
+ struct {
+ H5_ih_info_t_f obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */
+ H5_ih_info_t_f attr; /* v2 B-tree & heap for attributes */
+ } meta_size;
+} H5O_info_t_f;
+
+
+/*
+ * Functions from H5Ff.c
+ */
+#define nh5fcreate_c H5_FC_FUNC_(h5fcreate_c, H5FCREATE_C)
+#define nh5fflush_c H5_FC_FUNC_(h5fflush_c, H5FFLUSH_C)
+#define nh5fclose_c H5_FC_FUNC_(h5fclose_c, H5FCLOSE_C)
+#define nh5fopen_c H5_FC_FUNC_(h5fopen_c, H5FOPEN_C)
+#define nh5fis_hdf5_c H5_FC_FUNC_(h5fis_hdf5_c, H5FIS_HDF5_C)
+#define nh5fmount_c H5_FC_FUNC_(h5fmount_c, H5FMOUNT_C)
+#define nh5funmount_c H5_FC_FUNC_(h5funmount_c, H5FUNMOUNT_C)
+#define nh5freopen_c H5_FC_FUNC_(h5freopen_c, H5FREOPEN_C)
+#define nh5fget_create_plist_c H5_FC_FUNC_(h5fget_create_plist_c, H5FGET_CREATE_PLIST_C)
+#define nh5fget_access_plist_c H5_FC_FUNC_(h5fget_access_plist_c, H5FGET_ACCESS_PLIST_C)
+#define nh5fget_obj_count_c H5_FC_FUNC_(h5fget_obj_count_c, H5FGET_OBJ_COUNT_C)
+#define nh5fget_obj_ids_c H5_FC_FUNC_(h5fget_obj_ids_c, H5FGET_OBJ_IDS_C)
+#define nh5fget_freespace_c H5_FC_FUNC_(h5fget_freespace_c, H5FGET_FREESPACE_C)
+#define nh5fget_file_image_c H5_FC_FUNC_(h5fget_file_image_c, H5FGET_FILE_IMAGE_C)
+#define nh5fget_name_c H5_FC_FUNC_(h5fget_name_c, H5FGET_NAME_C)
+#define nh5fget_filesize_c H5_FC_FUNC_(h5fget_filesize_c, H5FGET_FILESIZE_C)
+
+H5_FCDLL int_f nh5fcreate_c (_fcd name, int_f *namelen, int_f *access_flags, hid_t_f *crt_prp, hid_t_f *acc_prp, hid_t_f *file_id);
+H5_FCDLL int_f nh5fopen_c (_fcd name, int_f *namelen, int_f *access_flags, hid_t_f *acc_prp, hid_t_f *file_id);
+H5_FCDLL int_f nh5fis_hdf5_c (_fcd name, int_f *namelen, int_f *flag);
+H5_FCDLL int_f nh5fclose_c (hid_t_f *file_id);
+H5_FCDLL int_f nh5fmount_c (hid_t_f *loc_id, _fcd dsetname, int_f *namelen, hid_t_f *file_id, hid_t_f *acc_prp);
+H5_FCDLL int_f nh5funmount_c (hid_t_f *loc_id, _fcd dsetname, int_f *namelen);
+H5_FCDLL int_f nh5freopen_c (hid_t_f *file_id1, hid_t_f *file_id2);
+H5_FCDLL int_f nh5fget_create_plist_c (hid_t_f *file_id, hid_t_f *prop_id);
+H5_FCDLL int_f nh5fget_access_plist_c (hid_t_f *file_id, hid_t_f *access_id);
+H5_FCDLL int_f nh5fget_obj_count_c (hid_t_f *file_id, int_f *obj_type, size_t_f *obj_count);
+H5_FCDLL int_f nh5fget_obj_ids_c (hid_t_f *file_id, int_f *obj_type, size_t_f *max_objs, hid_t_f *obj_ids, size_t_f *num_objs);
+H5_FCDLL int_f nh5fget_freespace_c (hid_t_f *file_id, hssize_t_f *free_space);
+H5_FCDLL int_f nh5fget_file_image_c(hid_t_f *file_id, void *buf_ptr, size_t_f *buf_len, size_t_f *buf_req);
+H5_FCDLL int_f nh5fflush_c (hid_t_f *obj_id, int_f *scope);
+H5_FCDLL int_f nh5fget_name_c(hid_t_f *obj_id, size_t_f *size, _fcd buf, size_t_f *buflen);
+H5_FCDLL int_f nh5fget_filesize_c(hid_t_f *file_id, hsize_t_f *size);
+
+/*
+ * Functions from H5Sf.c
+ */
+#define nh5screate_simple_c H5_FC_FUNC_(h5screate_simple_c, H5SCREATE_SIMPLE_C)
+#define nh5sclose_c H5_FC_FUNC_(h5sclose_c, H5SCLOSE_C)
+#define nh5screate_c H5_FC_FUNC_(h5screate_c, H5SCREATE_C)
+#define nh5scopy_c H5_FC_FUNC_(h5scopy_c, H5SCOPY_C)
+#define nh5sget_select_hyper_nblocks_c H5_FC_FUNC_(h5sget_select_hyper_nblocks_c, H5SGET_SELECT_HYPER_NBLOCKS_C)
+#define nh5sget_select_hyper_blocklist_c H5_FC_FUNC_(h5sget_select_hyper_blocklist_c, H5SGET_SELECT_HYPER_BLOCKLIST_C)
+#define nh5sget_select_elem_npoints_c H5_FC_FUNC_(h5sget_select_elem_npoints_c, H5SGET_SELECT_ELEM_NPOINTS_C)
+#define nh5sget_select_elem_pointlist_c H5_FC_FUNC_(h5sget_select_elem_pointlist_c, H5SGET_SELECT_ELEM_POINTLIST_C)
+#define nh5sget_select_bounds_c H5_FC_FUNC_(h5sget_select_bounds_c, H5SGET_SELECT_BOUNDS_C)
+#define nh5sselect_all_c H5_FC_FUNC_(h5sselect_all_c, H5SSELECT_ALL_C)
+#define nh5sselect_none_c H5_FC_FUNC_(h5sselect_none_c, H5SSELECT_NONE_C)
+#define nh5sselect_valid_c H5_FC_FUNC_(h5sselect_valid_c, H5SSELECT_VALID_C)
+#define nh5sget_simple_extent_npoints_c H5_FC_FUNC_(h5sget_simple_extent_npoints_c, H5SGET_SIMPLE_EXTENT_NPOINTS_C)
+#define nh5sget_select_npoints_c H5_FC_FUNC_(h5sget_select_npoints_c, H5SGET_SELECT_NPOINTS_C)
+#define nh5sget_simple_extent_ndims_c H5_FC_FUNC_(h5sget_simple_extent_ndims_c, H5SGET_SIMPLE_EXTENT_NDIMS_C)
+#define nh5sget_simple_extent_type_c H5_FC_FUNC_(h5sget_simple_extent_type_c, H5SGET_SIMPLE_EXTENT_TYPE_C)
+#define nh5soffset_simple_c H5_FC_FUNC_(h5soffset_simple_c, H5SOFFSET_SIMPLE_C)
+#define nh5sset_extent_simple_c H5_FC_FUNC_(h5sset_extent_simple_c, H5SSET_EXTENT_SIMPLE_C)
+#define nh5sis_simple_c H5_FC_FUNC_(h5sis_simple_c, H5SIS_SIMPLE_C)
+#define nh5sextent_class_c H5_FC_FUNC_(h5sextent_class_c, H5SEXTENT_CLASS_C)
+#define nh5sget_simple_extent_dims_c H5_FC_FUNC_(h5sget_simple_extent_dims_c, H5SGET_SIMPLE_EXTENT_DIMS_C)
+#define nh5sextent_copy_c H5_FC_FUNC_(h5sextent_copy_c, H5SEXTENT_COPY_C)
+#define nh5sset_extent_none_c H5_FC_FUNC_(h5sset_extent_none_c, H5SSET_EXTENT_NONE_C)
+#define nh5sselect_hyperslab_c H5_FC_FUNC_(h5sselect_hyperslab_c, H5SSELECT_HYPERSLAB_C)
+#define nh5scombine_hyperslab_c H5_FC_FUNC_(h5scombine_hyperslab_c, H5SCOMBINE_HYPERSLAB_C)
+#define nh5scombine_select_c H5_FC_FUNC_(h5scombine_select_c, H5SCOMBINE_SELECT_C)
+#define nh5sselect_select_c H5_FC_FUNC_(h5sselect_select_c, H5SSELECT_SELECT_C)
+#define nh5sget_select_type_c H5_FC_FUNC_(h5sget_select_type_c, H5SGET_SELECT_TYPE_C)
+#define nh5sselect_elements_c H5_FC_FUNC_(h5sselect_elements_c, H5SSELECT_ELEMENTS_C)
+#define nh5sdecode_c H5_FC_FUNC_(h5sdecode_c, H5SDECODE_C)
+#define nh5sencode_c H5_FC_FUNC_(h5sencode_c, H5SENCODE_C)
+#define nh5sextent_equal_c H5_FC_FUNC_(h5sextent_equal_c, H5SEXTENT_EQUAL_C)
+
+H5_FCDLL int_f nh5screate_simple_c ( int_f *rank, hsize_t_f *dims, hsize_t_f *maxdims, hid_t_f *space_id );
+H5_FCDLL int_f nh5sclose_c ( hid_t_f *space_id );
+H5_FCDLL int_f nh5screate_c ( int_f *classtype, hid_t_f *space_id );
+H5_FCDLL int_f nh5scopy_c ( hid_t_f *space_id , hid_t_f *new_space_id);
+H5_FCDLL int_f nh5sget_select_hyper_nblocks_c( hid_t_f *space_id , hssize_t_f * num_blocks);
+H5_FCDLL int_f nh5sget_select_hyper_blocklist_c( hid_t_f *space_id ,hsize_t_f * startblock, hsize_t_f * num_blocks, hsize_t_f * buf);
+H5_FCDLL int_f nh5sget_select_bounds_c( hid_t_f *space_id , hsize_t_f * start, hsize_t_f * end);
+H5_FCDLL int_f nh5sget_select_elem_npoints_c( hid_t_f *space_id , hssize_t_f * num_points);
+H5_FCDLL int_f nh5sget_select_elem_pointlist_c( hid_t_f *space_id ,hsize_t_f * startpoint, hsize_t_f * numpoints, hsize_t_f * buf);
+H5_FCDLL int_f nh5sselect_all_c ( hid_t_f *space_id );
+H5_FCDLL int_f nh5sselect_none_c ( hid_t_f *space_id );
+H5_FCDLL int_f nh5sselect_valid_c ( hid_t_f *space_id , int_f *flag );
+H5_FCDLL int_f nh5sget_simple_extent_npoints_c ( hid_t_f *space_id , hsize_t_f *npoints );
+H5_FCDLL int_f nh5sget_select_npoints_c ( hid_t_f *space_id , hssize_t_f *npoints );
+H5_FCDLL int_f nh5sget_simple_extent_ndims_c ( hid_t_f *space_id , int_f *ndims );
+H5_FCDLL int_f nh5sget_simple_extent_type_c ( hid_t_f *space_id , int_f *classtype);
+H5_FCDLL int_f nh5soffset_simple_c ( hid_t_f *space_id , hssize_t_f *offset);
+H5_FCDLL int_f nh5sset_extent_simple_c ( hid_t_f *space_id , int_f *rank, hsize_t_f * current_size, hsize_t_f *maximum_size);
+H5_FCDLL int_f nh5sis_simple_c ( hid_t_f *space_id , int_f *flag );
+H5_FCDLL int_f nh5sextent_class_c ( hid_t_f *space_id , int_f *classtype);
+H5_FCDLL int_f nh5sget_simple_extent_dims_c ( hid_t_f *space_id , hsize_t_f *dims, hsize_t_f *maxdims);
+H5_FCDLL int_f nh5sextent_copy_c ( hid_t_f *dest_space_id , hid_t_f *source_space_id);
+H5_FCDLL int_f nh5sset_extent_none_c ( hid_t_f *space_id );
+H5_FCDLL int_f nh5sselect_hyperslab_c ( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block);
+H5_FCDLL int_f nh5sget_select_type_c ( hid_t_f *space_id , int_f *op);
+H5_FCDLL int_f nh5sselect_elements_c ( hid_t_f *space_id , int_f *op, size_t_f *nelements, hsize_t_f *coord);
+H5_FCDLL int_f nh5scombine_hyperslab_c ( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id);
+H5_FCDLL int_f nh5scombine_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id);
+H5_FCDLL int_f nh5sselect_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id);
+H5_FCDLL int_f nh5sdecode_c ( _fcd buf, hid_t_f *obj_id );
+H5_FCDLL int_f nh5sencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc );
+H5_FCDLL int_f nh5sextent_equal_c ( hid_t_f * space1_id, hid_t_f *space2_id, hid_t_f *c_equal);
+
+/*
+ * Functions from H5Df.c
+ */
+#define nh5dcreate_c H5_FC_FUNC_(h5dcreate_c, H5DCREATE_C)
+#define nh5dclose_c H5_FC_FUNC_(h5dclose_c, H5DCLOSE_C)
+#define nh5dopen_c H5_FC_FUNC_(h5dopen_c, H5DOPEN_C)
+#define nh5dwrite_c H5_FC_FUNC_(h5dwrite_c, H5DWRITE_C)
+#define nh5dwrite_integer_s_c H5_FC_FUNC_(h5dwrite_integer_s_c, H5DWRITE_INTEGER_S_C)
+#define nh5dwrite_integer_1_c H5_FC_FUNC_(h5dwrite_integer_1_c, H5DWRITE_INTEGER_1_C)
+#define nh5dwrite_integer_2_c H5_FC_FUNC_(h5dwrite_integer_2_c, H5DWRITE_INTEGER_2_C)
+#define nh5dwrite_integer_3_c H5_FC_FUNC_(h5dwrite_integer_3_c, H5DWRITE_INTEGER_3_C)
+#define nh5dwrite_integer_4_c H5_FC_FUNC_(h5dwrite_integer_4_c, H5DWRITE_INTEGER_4_C)
+#define nh5dwrite_integer_5_c H5_FC_FUNC_(h5dwrite_integer_5_c, H5DWRITE_INTEGER_5_C)
+#define nh5dwrite_integer_6_c H5_FC_FUNC_(h5dwrite_integer_6_c, H5DWRITE_INTEGER_6_C)
+#define nh5dwrite_integer_7_c H5_FC_FUNC_(h5dwrite_integer_7_c, H5DWRITE_INTEGER_7_C)
+#define nh5dwrite_real_s_c H5_FC_FUNC_(h5dwrite_real_s_c, H5DWRITE_REAL_S_C)
+#define nh5dwrite_real_1_c H5_FC_FUNC_(h5dwrite_real_1_c, H5DWRITE_REAL_1_C)
+#define nh5dwrite_real_2_c H5_FC_FUNC_(h5dwrite_real_2_c, H5DWRITE_REAL_2_C)
+#define nh5dwrite_real_3_c H5_FC_FUNC_(h5dwrite_real_3_c, H5DWRITE_REAL_3_C)
+#define nh5dwrite_real_4_c H5_FC_FUNC_(h5dwrite_real_4_c, H5DWRITE_REAL_4_C)
+#define nh5dwrite_real_5_c H5_FC_FUNC_(h5dwrite_real_5_c, H5DWRITE_REAL_5_C)
+#define nh5dwrite_real_6_c H5_FC_FUNC_(h5dwrite_real_6_c, H5DWRITE_REAL_6_C)
+#define nh5dwrite_real_7_c H5_FC_FUNC_(h5dwrite_real_7_c, H5DWRITE_REAL_7_C)
+#define nh5dwrite_double_s_c H5_FC_FUNC_(h5dwrite_double_s_c, H5DWRITE_DOUBLE_S_C)
+#define nh5dwrite_double_1_c H5_FC_FUNC_(h5dwrite_double_1_c, H5DWRITE_DOUBLE_1_C)
+#define nh5dwrite_double_2_c H5_FC_FUNC_(h5dwrite_double_2_c, H5DWRITE_DOUBLE_2_C)
+#define nh5dwrite_double_3_c H5_FC_FUNC_(h5dwrite_double_3_c, H5DWRITE_DOUBLE_3_C)
+#define nh5dwrite_double_4_c H5_FC_FUNC_(h5dwrite_double_4_c, H5DWRITE_DOUBLE_4_C)
+#define nh5dwrite_double_5_c H5_FC_FUNC_(h5dwrite_double_5_c, H5DWRITE_DOUBLE_5_C)
+#define nh5dwrite_double_6_c H5_FC_FUNC_(h5dwrite_double_6_c, H5DWRITE_DOUBLE_6_C)
+#define nh5dwrite_double_7_c H5_FC_FUNC_(h5dwrite_double_7_c, H5DWRITE_DOUBLE_7_C)
+#define nh5dwrite_ref_obj_c H5_FC_FUNC_(h5dwrite_ref_obj_c, H5DWRITE_REF_OBJ_C)
+#define nh5dwrite_ref_reg_c H5_FC_FUNC_(h5dwrite_ref_reg_c, H5DWRITE_REF_REG_C)
+#define nh5dwritec_c H5_FC_FUNC_(h5dwritec_c, H5DWRITEC_C)
+#define nh5dwritec_s_c H5_FC_FUNC_(h5dwritec_s_c, H5DWRITEC_S_C)
+#define nh5dwritec_1_c H5_FC_FUNC_(h5dwritec_1_c, H5DWRITEC_1_C)
+#define nh5dwritec_2_c H5_FC_FUNC_(h5dwritec_2_c, H5DWRITEC_2_C)
+#define nh5dwritec_3_c H5_FC_FUNC_(h5dwritec_3_c, H5DWRITEC_3_C)
+#define nh5dwritec_4_c H5_FC_FUNC_(h5dwritec_4_c, H5DWRITEC_4_C)
+#define nh5dwritec_5_c H5_FC_FUNC_(h5dwritec_5_c, H5DWRITEC_5_C)
+#define nh5dwritec_6_c H5_FC_FUNC_(h5dwritec_6_c, H5DWRITEC_6_C)
+#define nh5dwritec_7_c H5_FC_FUNC_(h5dwritec_7_c, H5DWRITEC_7_C)
+#define nh5dread_c H5_FC_FUNC_(h5dread_c, H5DREAD_C)
+#define nh5dread_integer_s_c H5_FC_FUNC_(h5dread_integer_s_c, H5DREAD_INTEGER_S_C)
+#define nh5dread_integer_1_c H5_FC_FUNC_(h5dread_integer_1_c, H5DREAD_INTEGER_1_C)
+#define nh5dread_integer_2_c H5_FC_FUNC_(h5dread_integer_2_c, H5DREAD_INTEGER_2_C)
+#define nh5dread_integer_3_c H5_FC_FUNC_(h5dread_integer_3_c, H5DREAD_INTEGER_3_C)
+#define nh5dread_integer_4_c H5_FC_FUNC_(h5dread_integer_4_c, H5DREAD_INTEGER_4_C)
+#define nh5dread_integer_5_c H5_FC_FUNC_(h5dread_integer_5_c, H5DREAD_INTEGER_5_C)
+#define nh5dread_integer_6_c H5_FC_FUNC_(h5dread_integer_6_c, H5DREAD_INTEGER_6_C)
+#define nh5dread_integer_7_c H5_FC_FUNC_(h5dread_integer_7_c, H5DREAD_INTEGER_7_C)
+#define nh5dread_real_s_c H5_FC_FUNC_(h5dread_real_s_c, H5DREAD_REAL_S_C)
+#define nh5dread_real_1_c H5_FC_FUNC_(h5dread_real_1_c, H5DREAD_REAL_1_C)
+#define nh5dread_real_2_c H5_FC_FUNC_(h5dread_real_2_c, H5DREAD_REAL_2_C)
+#define nh5dread_real_3_c H5_FC_FUNC_(h5dread_real_3_c, H5DREAD_REAL_3_C)
+#define nh5dread_real_4_c H5_FC_FUNC_(h5dread_real_4_c, H5DREAD_REAL_4_C)
+#define nh5dread_real_5_c H5_FC_FUNC_(h5dread_real_5_c, H5DREAD_REAL_5_C)
+#define nh5dread_real_6_c H5_FC_FUNC_(h5dread_real_6_c, H5DREAD_REAL_6_C)
+#define nh5dread_real_7_c H5_FC_FUNC_(h5dread_real_7_c, H5DREAD_REAL_7_C)
+#define nh5dread_double_s_c H5_FC_FUNC_(h5dread_double_s_c, H5DREAD_DOUBLE_S_C)
+#define nh5dread_double_1_c H5_FC_FUNC_(h5dread_double_1_c, H5DREAD_DOUBLE_1_C)
+#define nh5dread_double_2_c H5_FC_FUNC_(h5dread_double_2_c, H5DREAD_DOUBLE_2_C)
+#define nh5dread_double_3_c H5_FC_FUNC_(h5dread_double_3_c, H5DREAD_DOUBLE_3_C)
+#define nh5dread_double_4_c H5_FC_FUNC_(h5dread_double_4_c, H5DREAD_DOUBLE_4_C)
+#define nh5dread_double_5_c H5_FC_FUNC_(h5dread_double_5_c, H5DREAD_DOUBLE_5_C)
+#define nh5dread_double_6_c H5_FC_FUNC_(h5dread_double_6_c, H5DREAD_DOUBLE_6_C)
+#define nh5dread_double_7_c H5_FC_FUNC_(h5dread_double_7_c, H5DREAD_DOUBLE_7_C)
+#define nh5dread_c_b H5_FC_FUNC_(h5dread_c_b, H5DREAD_C_B)
+#define nh5dread_ref_reg_c H5_FC_FUNC_(h5dread_ref_reg_c, H5DREAD_REF_REG_C)
+#define nh5dread_ref_obj_c H5_FC_FUNC_(h5dread_ref_obj_c, H5DREAD_REF_OBJ_C)
+#define nh5dreadc_c H5_FC_FUNC_(h5dreadc_c, H5DREADC_C)
+#define nh5dreadc_s_c H5_FC_FUNC_(h5dreadc_s_c, H5DREADC_S_C)
+#define nh5dreadc_1_c H5_FC_FUNC_(h5dreadc_1_c, H5DREADC_1_C)
+#define nh5dreadc_2_c H5_FC_FUNC_(h5dreadc_2_c, H5DREADC_2_C)
+#define nh5dreadc_3_c H5_FC_FUNC_(h5dreadc_3_c, H5DREADC_3_C)
+#define nh5dreadc_4_c H5_FC_FUNC_(h5dreadc_4_c, H5DREADC_4_C)
+#define nh5dreadc_5_c H5_FC_FUNC_(h5dreadc_5_c, H5DREADC_5_C)
+#define nh5dreadc_6_c H5_FC_FUNC_(h5dreadc_6_c, H5DREADC_6_C)
+#define nh5dreadc_7_c H5_FC_FUNC_(h5dreadc_7_c, H5DREADC_7_C)
+#define nh5dreadc_c_b H5_FC_FUNC_(h5dreadc_c_b, H5DREADC_C_B)
+#define nh5dget_space_c H5_FC_FUNC_(h5dget_space_c, H5DGET_SPACE_C)
+#define nh5dget_type_c H5_FC_FUNC_(h5dget_type_c, H5DGET_TYPE_C)
+#define nh5dget_create_plist_c H5_FC_FUNC_(h5dget_create_plist_c, H5DGET_CREATE_PLIST_C)
+#define nh5dset_extent_c H5_FC_FUNC_(h5dset_extent_c, H5DSET_EXTENT_C)
+#define nh5dget_storage_size_c H5_FC_FUNC_(h5dget_storage_size_c, H5DGET_STORAGE_SIZE_C)
+#define nh5dvlen_get_max_len_c H5_FC_FUNC_(h5dvlen_get_max_len_c, H5DVLEN_GET_MAX_LEN_C)
+#define nh5dwrite_vl_integer_c H5_FC_FUNC_(h5dwrite_vl_integer_c, H5DWRITE_VL_INTEGER_C)
+#define nh5dread_vl_integer_c H5_FC_FUNC_(h5dread_vl_integer_c, H5DREAD_VL_INTEGER_C)
+#define nh5dwrite_vl_real_c H5_FC_FUNC_(h5dwrite_vl_real_c, H5DWRITE_VL_REAL_C)
+#define nh5dread_vl_real_c H5_FC_FUNC_(h5dread_vl_real_c, H5DREAD_VL_REAL_C)
+#define nh5dwrite_vl_string_c H5_FC_FUNC_(h5dwrite_vl_string_c, H5DWRITE_VL_STRING_C)
+#define nh5dread_vl_string_c H5_FC_FUNC_(h5dread_vl_string_c, H5DREAD_VL_STRING_C)
+#define nh5dfillc_c H5_FC_FUNC_(h5dfillc_c, H5DFILLC_C)
+#define nh5dfill_c H5_FC_FUNC_(h5dfill_c, H5DFILL_C)
+#define nh5dfill_integer_c H5_FC_FUNC_(h5dfill_integer_c, H5DFILL_INTEGER_C)
+#define nh5dfill_real_c H5_FC_FUNC_(h5dfill_real_c, H5DFILL_REAL_C)
+#define nh5dfill_double_c H5_FC_FUNC_(h5dfill_double_c, H5DFILL_DOUBLE_C)
+#define nh5dget_space_status_c H5_FC_FUNC_(h5dget_space_status_c, H5DGET_SPACE_STATUS_C)
+#define nh5dcreate_anon_c H5_FC_FUNC_(h5dcreate_anon_c, H5DCREATE_ANON_C)
+#define nh5dwrite_f_c H5_FC_FUNC_(h5dwrite_f_c, H5DWRITE_F_C)
+#define nh5dread_f_c H5_FC_FUNC_(h5dread_f_c, H5DREAD_F_C)
+#define nh5dget_access_plist_c H5_FC_FUNC_(h5dget_access_plist_c, H5DGET_ACCESS_PLIST_C)
+#define nh5dvlen_reclaim_c H5_FC_FUNC_(h5dvlen_reclaim_c, H5DVLEN_RECLAIM_C)
+
+
+H5_FCDLL int_f nh5dcreate_c (hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *type_id, hid_t_f *space_id,
+ hid_t_f *lcpl_id, hid_t_f *dcpl_id, hid_t_f *dapl_id, hid_t_f *dset_id);
+H5_FCDLL int_f nh5dopen_c (hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *dapl_id, hid_t_f *dset_id);
+H5_FCDLL int_f nh5dclose_c ( hid_t_f *dset_id );
+H5_FCDLL int_f nh5dwrite_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_integer_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dwrite_real_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_real_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dwrite_double_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_double_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dwrite_vl_integer_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, int_f *buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dwrite_vl_real_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, real_f *buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dwrite_vl_string_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dwrite_ref_obj_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, haddr_t_f *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwrite_ref_reg_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, int_f *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dwritec_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dwritec_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dwritec_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dread_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dread_integer_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_integer_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dread_real_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_real_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dread_double_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_double_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dread_vl_integer_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, int_f *buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dread_vl_real_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, real_f *buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dread_vl_string_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims, size_t_f *len);
+H5_FCDLL int_f nh5dread_ref_obj_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, haddr_t_f * buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dread_ref_reg_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, int_f * buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dreadc_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+
+H5_FCDLL int_f nh5dreadc_s_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_1_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_2_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_3_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_4_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_5_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_6_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dreadc_7_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id, hid_t_f *file_space_id, hid_t_f *xfer_prp, _fcd buf, hsize_t_f *dims);
+H5_FCDLL int_f nh5dget_access_plist_c (hid_t_f *dset_id, hid_t_f *plist_id);
+
+
+H5_FCDLL int_f nh5dget_space_c ( hid_t_f *dset_id , hid_t_f *space_id);
+H5_FCDLL int_f nh5dget_type_c ( hid_t_f *dset_id , hid_t_f *type_id);
+H5_FCDLL int_f nh5dget_create_plist_c ( hid_t_f *dset_id , hid_t_f *plist_id);
+H5_FCDLL int_f nh5dset_extent_c ( hid_t_f *dset_id , hsize_t_f *dims);
+H5_FCDLL int_f nh5dvlen_get_max_len_c(hid_t_f *dataset_id, hid_t_f *type_id, hid_t_f *space_id, size_t_f *len);
+H5_FCDLL int_f nh5dget_storage_size_c(hid_t_f *dataset_id, hsize_t_f *size);
+H5_FCDLL int_f nh5dfillc_c(_fcd fill_value, hid_t_f *fill_type_id, hid_t_f *space_id, _fcd buf, hid_t_f *mem_type_id);
+H5_FCDLL int_f nh5dfill_c(void * fill_value, hid_t_f *fill_type_id, hid_t_f *space_id, void * buf, hid_t_f *mem_type_id);
+H5_FCDLL int_f nh5dfill_integer_c(void * fill_value, hid_t_f *fill_type_id, hid_t_f *space_id, void * buf, hid_t_f *mem_type_id);
+H5_FCDLL int_f nh5dfill_real_c(void * fill_value, hid_t_f *fill_type_id, hid_t_f *space_id, void * buf, hid_t_f *mem_type_id);
+H5_FCDLL int_f nh5dfill_double_c(void * fill_value, hid_t_f *fill_type_id, hid_t_f *space_id, void * buf, hid_t_f *mem_type_id);
+H5_FCDLL int_f nh5dget_space_status_c ( hid_t_f *dset_id, int_f *flag);
+H5_FCDLL int_f nh5dcreate_anon_c (hid_t_f *loc_id, hid_t_f *type_id, hid_t_f *space_id,
+ hid_t_f *dcpl_id, hid_t_f *dapl_id, hid_t_f *dset_id);
+H5_FCDLL int_f nh5dwrite_f_c (hid_t_f *dset_id, hid_t_f *mem_type_id, hid_t_f *mem_space_id,
+ hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf);
+H5_FCDLL int_f nh5dread_f_c ( hid_t_f *dset_id , hid_t_f *mem_type_id, hid_t_f *mem_space_id,
+ hid_t_f *file_space_id, hid_t_f *xfer_prp, void *buf);
+H5_FCDLL int_f nh5dvlen_reclaim_c (hid_t_f *type_id , hid_t_f *space_id, hid_t_f *plist_id, void *buf);
+/*
+ * Functions from H5Gf.c
+ */
+#define nh5gcreate_c H5_FC_FUNC_(h5gcreate_c, H5GCREATE_C)
+#define nh5gclose_c H5_FC_FUNC_(h5gclose_c, H5GCLOSE_C)
+#define nh5gopen_c H5_FC_FUNC_(h5gopen_c, H5GOPEN_C)
+#define nh5gget_obj_info_idx_c H5_FC_FUNC_(h5gget_obj_info_idx_c, H5GGET_OBJ_INFO_IDX_C)
+#define nh5gn_members_c H5_FC_FUNC_(h5gn_members_c, H5GN_MEMBERS_C)
+#define nh5glink_c H5_FC_FUNC_(h5glink_c, H5GLINK_C)
+#define nh5glink2_c H5_FC_FUNC_(h5glink2_c, H5GLINK2_C)
+#define nh5gunlink_c H5_FC_FUNC_(h5gunlink_c, H5GUNLINK_C)
+#define nh5gmove_c H5_FC_FUNC_(h5gmove_c, H5GMOVE_C)
+#define nh5gmove2_c H5_FC_FUNC_(h5gmove2_c, H5GMOVE2_C)
+#define nh5gget_linkval_c H5_FC_FUNC_(h5gget_linkval_c, H5GGET_LINKVAL_C)
+#define nh5gset_comment_c H5_FC_FUNC_(h5gset_comment_c, H5GSET_COMMENT_C)
+#define nh5gget_comment_c H5_FC_FUNC_(h5gget_comment_c, H5GGET_COMMENT_C)
+#define nh5gcreate_anon_c H5_FC_FUNC_(h5gcreate_anon_c, H5GCREATE_ANON_C)
+#define nh5gget_create_plist_c H5_FC_FUNC_(h5gget_create_plist_c, H5GGET_CREATE_PLIST_C)
+#define nh5gget_info_c H5_FC_FUNC_(h5gget_info_c, H5GGET_INFO_C)
+#define nh5gget_info_by_idx_c H5_FC_FUNC_(h5gget_info_by_idx_c, H5GGET_INFO_BY_IDX_C)
+#define nh5gget_info_by_name_c H5_FC_FUNC_(h5gget_info_by_name_c, H5GGET_INFO_BY_NAME_C)
+
+
+H5_FCDLL int_f nh5gcreate_c (hid_t_f *loc_id, _fcd name, int_f *namelen, size_t_f *size_hint, hid_t_f *grp_id,
+ hid_t_f *lcpl_id, hid_t_f *gcpl_id, hid_t_f *gapl_id);
+H5_FCDLL int_f nh5gopen_c (hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *gapl_id, hid_t_f *grp_id);
+H5_FCDLL int_f nh5gclose_c ( hid_t_f *grp_id );
+H5_FCDLL int_f nh5gget_obj_info_idx_c (hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, _fcd obj_name, int_f *obj_namelen, int_f *obj_type);
+H5_FCDLL int_f nh5gn_members_c (hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *nmembers);
+H5_FCDLL int_f nh5glink_c (hid_t_f *loc_id, int_f *link_type, _fcd current_name, int_f *current_namelen, _fcd new_name, int_f *new_namelen);
+H5_FCDLL int_f nh5glink2_c (hid_t_f *cur_loc_id, _fcd cur_name, int_f *cur_namelen, int_f *link_type, hid_t_f *new_loc_id, _fcd new_name, int_f *new_namelen);
+H5_FCDLL int_f nh5gunlink_c (hid_t_f *loc_id, _fcd name, int_f *namelen);
+H5_FCDLL int_f nh5gmove_c (hid_t_f *loc_id, _fcd src_name, int_f *src_namelen, _fcd dst_name, int_f *dst_namelen);
+H5_FCDLL int_f nh5gmove2_c (hid_t_f *src_loc_id, _fcd src_name, int_f *src_namelen, hid_t_f *dst_loc_id,_fcd dst_name, int_f *dst_namelen);
+H5_FCDLL int_f nh5gget_linkval_c (hid_t_f *loc_id, _fcd name, int_f *namelen, size_t_f *size, _fcd value );
+H5_FCDLL int_f nh5gset_comment_c (hid_t_f *loc_id, _fcd name, int_f *namelen, _fcd comment, int_f *commentlen);
+H5_FCDLL int_f nh5gget_comment_c (hid_t_f *loc_id, _fcd name, int_f *namelen, size_t_f *bufsize, _fcd comment);
+H5_FCDLL int_f nh5gcreate_anon_c (hid_t_f *loc_id, hid_t_f *gcpl_id, hid_t_f *gapl_id, hid_t_f *grp_id);
+H5_FCDLL int_f nh5gget_create_plist_c(hid_t_f *grp_id, hid_t_f *gcpl_id );
+H5_FCDLL int_f nh5gget_info_c (hid_t_f *group_id, int_f *storage_type, int_f *nlinks, int_f *max_corder, int_f *mounted);
+H5_FCDLL int_f nh5gget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *lapl_id,
+ int_f *storage_type, int_f *nlinks, int_f *max_corder, int_f *mounted);
+H5_FCDLL int_f nh5gget_info_by_name_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, hid_t_f *lapl_id,
+ int_f *storage_type, int_f *nlinks, int_f *max_corder, int_f *mounted);
+
+/*
+ * Functions from H5Af.c
+ */
+#define nh5acreate_c H5_FC_FUNC_(h5acreate_c, H5ACREATE_C)
+#define nh5aclose_c H5_FC_FUNC_(h5aclose_c, H5ACLOSE_C)
+#define nh5aopen_name_c H5_FC_FUNC_(h5aopen_name_c, H5AOPEN_NAME_C)
+#define nh5awrite_c H5_FC_FUNC_(h5awrite_c, H5AWRITE_C)
+#define nh5awrite_integer_s_c H5_FC_FUNC_(h5awrite_integer_s_c, H5AWRITE_INTEGER_S_C)
+#define nh5awrite_integer_1_c H5_FC_FUNC_(h5awrite_integer_1_c, H5AWRITE_INTEGER_1_C)
+#define nh5awrite_integer_2_c H5_FC_FUNC_(h5awrite_integer_2_c, H5AWRITE_INTEGER_2_C)
+#define nh5awrite_integer_3_c H5_FC_FUNC_(h5awrite_integer_3_c, H5AWRITE_INTEGER_3_C)
+#define nh5awrite_integer_4_c H5_FC_FUNC_(h5awrite_integer_4_c, H5AWRITE_INTEGER_4_C)
+#define nh5awrite_integer_5_c H5_FC_FUNC_(h5awrite_integer_5_c, H5AWRITE_INTEGER_5_C)
+#define nh5awrite_integer_6_c H5_FC_FUNC_(h5awrite_integer_6_c, H5AWRITE_INTEGER_6_C)
+#define nh5awrite_integer_7_c H5_FC_FUNC_(h5awrite_integer_7_c, H5AWRITE_INTEGER_7_C)
+#define nh5awrite_real_s_c H5_FC_FUNC_(h5awrite_real_s_c, H5AWRITE_REAL_S_C)
+#define nh5awrite_real_1_c H5_FC_FUNC_(h5awrite_real_1_c, H5AWRITE_REAL_1_C)
+#define nh5awrite_real_2_c H5_FC_FUNC_(h5awrite_real_2_c, H5AWRITE_REAL_2_C)
+#define nh5awrite_real_3_c H5_FC_FUNC_(h5awrite_real_3_c, H5AWRITE_REAL_3_C)
+#define nh5awrite_real_4_c H5_FC_FUNC_(h5awrite_real_4_c, H5AWRITE_REAL_4_C)
+#define nh5awrite_real_5_c H5_FC_FUNC_(h5awrite_real_5_c, H5AWRITE_REAL_5_C)
+#define nh5awrite_real_6_c H5_FC_FUNC_(h5awrite_real_6_c, H5AWRITE_REAL_6_C)
+#define nh5awrite_real_7_c H5_FC_FUNC_(h5awrite_real_7_c, H5AWRITE_REAL_7_C)
+#define nh5awrite_double_s_c H5_FC_FUNC_(h5awrite_double_s_c, H5AWRITE_DOUBLE_S_C)
+#define nh5awrite_double_1_c H5_FC_FUNC_(h5awrite_double_1_c, H5AWRITE_DOUBLE_1_C)
+#define nh5awrite_double_2_c H5_FC_FUNC_(h5awrite_double_2_c, H5AWRITE_DOUBLE_2_C)
+#define nh5awrite_double_3_c H5_FC_FUNC_(h5awrite_double_3_c, H5AWRITE_DOUBLE_3_C)
+#define nh5awrite_double_4_c H5_FC_FUNC_(h5awrite_double_4_c, H5AWRITE_DOUBLE_4_C)
+#define nh5awrite_double_5_c H5_FC_FUNC_(h5awrite_double_5_c, H5AWRITE_DOUBLE_5_C)
+#define nh5awrite_double_6_c H5_FC_FUNC_(h5awrite_double_6_c, H5AWRITE_DOUBLE_6_C)
+#define nh5awrite_double_7_c H5_FC_FUNC_(h5awrite_double_7_c, H5AWRITE_DOUBLE_7_C)
+#define nh5awritec_c H5_FC_FUNC_(h5awritec_c, H5AWRITEC_C)
+#define nh5awritec_s_c H5_FC_FUNC_(h5awritec_s_c, H5AWRITEC_S_C)
+#define nh5awritec_1_c H5_FC_FUNC_(h5awritec_1_c, H5AWRITEC_1_C)
+#define nh5awritec_2_c H5_FC_FUNC_(h5awritec_2_c, H5AWRITEC_2_C)
+#define nh5awritec_3_c H5_FC_FUNC_(h5awritec_3_c, H5AWRITEC_3_C)
+#define nh5awritec_4_c H5_FC_FUNC_(h5awritec_4_c, H5AWRITEC_4_C)
+#define nh5awritec_5_c H5_FC_FUNC_(h5awritec_5_c, H5AWRITEC_5_C)
+#define nh5awritec_6_c H5_FC_FUNC_(h5awritec_6_c, H5AWRITEC_6_C)
+#define nh5awritec_7_c H5_FC_FUNC_(h5awritec_7_c, H5AWRITEC_7_C)
+#define nh5awrite_f_c H5_FC_FUNC_(h5awrite_f_c, H5AWRITE_F_C)
+#define nh5aread_c H5_FC_FUNC_(h5aread_c, H5AREAD_C)
+#define nh5aread_integer_s_c H5_FC_FUNC_(h5aread_integer_s_c, H5AREAD_INTEGER_S_C)
+#define nh5aread_integer_1_c H5_FC_FUNC_(h5aread_integer_1_c, H5AREAD_INTEGER_1_C)
+#define nh5aread_integer_2_c H5_FC_FUNC_(h5aread_integer_2_c, H5AREAD_INTEGER_2_C)
+#define nh5aread_integer_3_c H5_FC_FUNC_(h5aread_integer_3_c, H5AREAD_INTEGER_3_C)
+#define nh5aread_integer_4_c H5_FC_FUNC_(h5aread_integer_4_c, H5AREAD_INTEGER_4_C)
+#define nh5aread_integer_5_c H5_FC_FUNC_(h5aread_integer_5_c, H5AREAD_INTEGER_5_C)
+#define nh5aread_integer_6_c H5_FC_FUNC_(h5aread_integer_6_c, H5AREAD_INTEGER_6_C)
+#define nh5aread_integer_7_c H5_FC_FUNC_(h5aread_integer_7_c, H5AREAD_INTEGER_7_C)
+#define nh5aread_real_s_c H5_FC_FUNC_(h5aread_real_s_c, H5AREAD_REAL_S_C)
+#define nh5aread_real_1_c H5_FC_FUNC_(h5aread_real_1_c, H5AREAD_REAL_1_C)
+#define nh5aread_real_2_c H5_FC_FUNC_(h5aread_real_2_c, H5AREAD_REAL_2_C)
+#define nh5aread_real_3_c H5_FC_FUNC_(h5aread_real_3_c, H5AREAD_REAL_3_C)
+#define nh5aread_real_4_c H5_FC_FUNC_(h5aread_real_4_c, H5AREAD_REAL_4_C)
+#define nh5aread_real_5_c H5_FC_FUNC_(h5aread_real_5_c, H5AREAD_REAL_5_C)
+#define nh5aread_real_6_c H5_FC_FUNC_(h5aread_real_6_c, H5AREAD_REAL_6_C)
+#define nh5aread_real_7_c H5_FC_FUNC_(h5aread_real_7_c, H5AREAD_REAL_7_C)
+#define nh5aread_double_s_c H5_FC_FUNC_(h5aread_double_s_c, H5AREAD_DOUBLE_S_C)
+#define nh5aread_double_1_c H5_FC_FUNC_(h5aread_double_1_c, H5AREAD_DOUBLE_1_C)
+#define nh5aread_double_2_c H5_FC_FUNC_(h5aread_double_2_c, H5AREAD_DOUBLE_2_C)
+#define nh5aread_double_3_c H5_FC_FUNC_(h5aread_double_3_c, H5AREAD_DOUBLE_3_C)
+#define nh5aread_double_4_c H5_FC_FUNC_(h5aread_double_4_c, H5AREAD_DOUBLE_4_C)
+#define nh5aread_double_5_c H5_FC_FUNC_(h5aread_double_5_c, H5AREAD_DOUBLE_5_C)
+#define nh5aread_double_6_c H5_FC_FUNC_(h5aread_double_6_c, H5AREAD_DOUBLE_6_C)
+#define nh5aread_double_7_c H5_FC_FUNC_(h5aread_double_7_c, H5AREAD_DOUBLE_7_C)
+#define nh5areadc_c H5_FC_FUNC_(h5areadc_c, H5AREADC_C)
+#define nh5areadc_s_c H5_FC_FUNC_(h5areadc_s_c, H5AREADC_S_C)
+#define nh5areadc_1_c H5_FC_FUNC_(h5areadc_1_c, H5AREADC_1_C)
+#define nh5areadc_2_c H5_FC_FUNC_(h5areadc_2_c, H5AREADC_2_C)
+#define nh5areadc_3_c H5_FC_FUNC_(h5areadc_3_c, H5AREADC_3_C)
+#define nh5areadc_4_c H5_FC_FUNC_(h5areadc_4_c, H5AREADC_4_C)
+#define nh5areadc_5_c H5_FC_FUNC_(h5areadc_5_c, H5AREADC_5_C)
+#define nh5areadc_6_c H5_FC_FUNC_(h5areadc_6_c, H5AREADC_6_C)
+#define nh5areadc_7_c H5_FC_FUNC_(h5areadc_7_c, H5AREADC_7_C)
+#define nh5aread_f_c H5_FC_FUNC_(h5aread_f_c, H5AREAD_F_C)
+#define nh5aget_name_c H5_FC_FUNC_(h5aget_name_c, H5AGET_NAME_C)
+#define nh5aopen_idx_c H5_FC_FUNC_(h5aopen_idx_c, H5AOPEN_IDX_C)
+#define nh5aget_space_c H5_FC_FUNC_(h5aget_space_c, H5AGET_SPACE_C)
+#define nh5aget_type_c H5_FC_FUNC_(h5aget_type_c, H5AGET_TYPE_C)
+#define nh5aget_num_attrs_c H5_FC_FUNC_(h5aget_num_attrs_c, H5AGET_NUM_ATTRS_C)
+#define nh5adelete_c H5_FC_FUNC_(h5adelete_c, H5ADELETE_C)
+#define nh5aget_storage_size_c H5_FC_FUNC_(h5aget_storage_size_c, H5AGET_STORAGE_SIZE_C)
+#define nh5arename_by_name_c H5_FC_FUNC_(h5arename_by_name_c, H5ARENAME_BY_NAME_C)
+#define nh5aopen_c H5_FC_FUNC_(h5aopen_c, H5AOPEN_C)
+#define nh5adelete_by_name_c H5_FC_FUNC_(h5adelete_by_name_c,H5ADELETE_BY_NAME_C)
+#define nh5adelete_by_idx_c H5_FC_FUNC_(h5adelete_by_idx_c,H5ADELETE_BY_IDX_C)
+#define nh5aget_name_by_idx_c H5_FC_FUNC_(h5aget_name_by_idx_c,H5AGET_NAME_BY_IDX_C)
+#define nh5aget_create_plist_c H5_FC_FUNC_(h5aget_create_plist_c,H5AGET_CREATE_PLIST_C)
+#define nh5aopen_by_idx_c H5_FC_FUNC_(h5aopen_by_idx_c,H5AOPEN_BY_IDX_C)
+#define nh5aget_info_c H5_FC_FUNC_(h5aget_info_c,H5AGET_INFO_C)
+#define nh5aget_info_by_idx_c H5_FC_FUNC_(h5aget_info_by_idx_c,H5AGET_INFO_BY_IDX_C)
+#define nh5aget_info_by_name_c H5_FC_FUNC_(h5aget_info_by_name_c,H5AGET_INFO_BY_NAME_C)
+#define nh5aget_info_by_name_c H5_FC_FUNC_(h5aget_info_by_name_c,H5AGET_INFO_BY_NAME_C)
+#define nh5acreate_by_name_c H5_FC_FUNC_(h5acreate_by_name_c,H5ACREATE_BY_NAME_C)
+#define nh5aexists_c H5_FC_FUNC_(h5aexists_c,H5AEXISTS_C)
+#define nh5aexists_by_name_c H5_FC_FUNC_(h5aexists_by_name_c,H5AEXISTS_BY_NAME_C)
+#define nh5aopen_by_name_c H5_FC_FUNC_(h5aopen_by_name_c,H5AOPEN_BY_NAME_C)
+#define nh5arename_c H5_FC_FUNC_(h5arename_c,H5ARENAME_C)
+
+H5_FCDLL int_f nh5acreate_c (hid_t_f *obj_id, _fcd name, size_t_f *namelen, hid_t_f *type_id, hid_t_f *space_id, hid_t_f *crt_prp, hid_t_f *aapl, hid_t_f *attr_id);
+H5_FCDLL int_f nh5aopen_name_c (hid_t_f *obj_id, _fcd name, size_t_f *namelen, hid_t_f *attr_id);
+H5_FCDLL int_f nh5awritec_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awritec_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5awrite_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_integer_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_real_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_double_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5awrite_f_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf);
+H5_FCDLL int_f nh5areadc_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5areadc_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, _fcd buf, void *dims);
+H5_FCDLL int_f nh5aread_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_integer_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_real_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_s_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_1_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_2_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_3_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_4_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_5_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_6_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_double_7_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf, void *dims);
+H5_FCDLL int_f nh5aread_f_c (hid_t_f *attr_id, hid_t_f *mem_type_id, void *buf);
+H5_FCDLL int_f nh5aclose_c ( hid_t_f *attr_id );
+H5_FCDLL int_f nh5adelete_c (hid_t_f *obj_id, _fcd name, size_t_f *namelen);
+H5_FCDLL int_f nh5aopen_idx_c (hid_t_f *obj_id, int_f *idx, hid_t_f *attr_id);
+H5_FCDLL int_f nh5aget_space_c (hid_t_f *attr_id, hid_t_f *space_id);
+H5_FCDLL int_f nh5aget_type_c (hid_t_f *attr_id, hid_t_f *type_id);
+H5_FCDLL int_f nh5aget_num_attrs_c (hid_t_f *obj_id, int_f *attr_num);
+H5_FCDLL int_f nh5aget_name_c(hid_t_f *attr_id, size_t_f *size, _fcd buf);
+H5_FCDLL int_f nh5aget_storage_size_c ( hid_t_f *attr_id, hsize_t_f *size );
+H5_FCDLL int_f nh5arename_by_name_c ( hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ _fcd old_attr_name, size_t_f *old_attr_namelen,
+ _fcd new_attr_name, size_t_f *new_attr_namelen,
+ hid_t_f *lapl_id );
+H5_FCDLL int_f nh5aopen_c ( hid_t_f *obj_id, _fcd attr_name, size_t_f *attr_namelen,
+ hid_t_f *aapl_id, hid_t_f *attr_id);
+H5_FCDLL int_f nh5adelete_by_name_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ _fcd attr_name, size_t_f *attr_namelen, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5adelete_by_idx_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ int_f *idx_type, int_f *order, hsize_t_f *n, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5aget_name_by_idx_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ int_f *idx_type, int_f *order, hsize_t_f *n, _fcd name,
+ size_t_f *size, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5aget_create_plist_c ( hid_t_f *attr_id, hid_t_f *creation_prop_id );
+H5_FCDLL int_f nh5aopen_by_idx_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ int_f *idx_type, int_f *order, hsize_t_f *n, hid_t_f *aapl_id, hid_t_f *lapl_id, hid_t_f *attr_id);
+H5_FCDLL int_f nh5aget_info_c (hid_t_f *loc_id, int_f *corder_valid, int_f *corder,
+ int_f *cset, hsize_t_f *data_size );
+H5_FCDLL int_f nh5aget_info_by_idx_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ int_f *idx_type, int_f *order, hsize_t_f *n, hid_t_f *lapl_id,
+ int_f *corder_valid, int_f *corder,
+ int_f *cset, hsize_t_f *data_size );
+H5_FCDLL int_f nh5aget_info_by_name_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ _fcd attr_name, size_t_f *attr_namelen, hid_t_f *lapl_id,
+ int_f *corder_valid, int_f *corder,
+ int_f *cset, hsize_t_f *data_size );
+H5_FCDLL int_f nh5acreate_by_name_c(hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ _fcd attr_name, size_t_f *attr_namelen, hid_t_f *type_id,
+ hid_t_f *space_id, hid_t_f *acpl_id, hid_t_f *aapl_id,
+ hid_t_f *lapl_id, hid_t_f *attr_id );
+H5_FCDLL int_f nh5aexists_c (hid_t_f *obj_id, _fcd name, size_t_f *namelen, hid_t_f *attr_exists);
+H5_FCDLL int_f nh5aexists_by_name_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen, _fcd attr_name, size_t_f *attr_namelen,
+ hid_t_f *lapl_id, int_f *attr_exists);
+H5_FCDLL int_f nh5aopen_by_name_c (hid_t_f *loc_id, _fcd obj_name, size_t_f *obj_namelen, _fcd attr_name, size_t_f *attr_namelen,
+ hid_t_f *aapl_id, hid_t_f *lapl_id, hid_t_f *attr_id);
+H5_FCDLL int_f nh5arename_c( hid_t_f *loc_id,
+ _fcd old_attr_name, size_t_f *old_attr_namelen,
+ _fcd new_attr_name, size_t_f *new_attr_namelen);
+
+/*
+ * Functions form H5Tf.c file
+ */
+#define nh5topen_c H5_FC_FUNC_(h5topen_c, H5TOPEN_C)
+#define nh5tcommit_c H5_FC_FUNC_(h5tcommit_c, H5TCOMMIT_C)
+#define nh5tcommitted_c H5_FC_FUNC_(h5tcommitted_c, H5TCOMMITTED_C)
+#define nh5tconvert_c H5_FC_FUNC_(h5tconvert_c, H5TCONVERT_C)
+#define nh5tclose_c H5_FC_FUNC_(h5tclose_c, H5TCLOSE_C)
+#define nh5tcopy_c H5_FC_FUNC_(h5tcopy_c, H5TCOPY_C)
+#define nh5tequal_c H5_FC_FUNC_(h5tequal_c, H5TEQUAL_C)
+#define nh5tget_class_c H5_FC_FUNC_(h5tget_class_c, H5TGET_CLASS_C)
+#define nh5tget_order_c H5_FC_FUNC_(h5tget_order_c, H5TGET_ORDER_C)
+#define nh5tset_order_c H5_FC_FUNC_(h5tset_order_c, H5TSET_ORDER_C)
+#define nh5tget_size_c H5_FC_FUNC_(h5tget_size_c, H5TGET_SIZE_C)
+#define nh5tset_size_c H5_FC_FUNC_(h5tset_size_c, H5TSET_SIZE_C)
+#define nh5tget_precision_c H5_FC_FUNC_(h5tget_precision_c, H5TGET_PRECISION_C)
+#define nh5tset_precision_c H5_FC_FUNC_(h5tset_precision_c, H5TSET_PRECISION_C)
+#define nh5tget_offset_c H5_FC_FUNC_(h5tget_offset_c, H5TGET_OFFSET_C)
+#define nh5tset_offset_c H5_FC_FUNC_(h5tset_offset_c, H5TSET_OFFSET_C)
+#define nh5tget_pad_c H5_FC_FUNC_(h5tget_pad_c, H5TGET_PAD_C)
+#define nh5tset_pad_c H5_FC_FUNC_(h5tset_pad_c, H5TSET_PAD_C)
+#define nh5tget_sign_c H5_FC_FUNC_(h5tget_sign_c, H5TGET_SIGN_C)
+#define nh5tset_sign_c H5_FC_FUNC_(h5tset_sign_c, H5TSET_SIGN_C)
+#define nh5tget_fields_c H5_FC_FUNC_(h5tget_fields_c, H5TGET_FIELDS_C)
+#define nh5tset_fields_c H5_FC_FUNC_(h5tset_fields_c, H5TSET_FIELDS_C)
+#define nh5tget_ebias_c H5_FC_FUNC_(h5tget_ebias_c, H5TGET_EBIAS_C)
+#define nh5tset_ebias_c H5_FC_FUNC_(h5tset_ebias_c, H5TSET_EBIAS_C)
+#define nh5tget_norm_c H5_FC_FUNC_(h5tget_norm_c, H5TGET_NORM_C)
+#define nh5tset_norm_c H5_FC_FUNC_(h5tset_norm_c, H5TSET_NORM_C)
+#define nh5tget_inpad_c H5_FC_FUNC_(h5tget_inpad_c, H5TGET_INPAD_C)
+#define nh5tset_inpad_c H5_FC_FUNC_(h5tset_inpad_c, H5TSET_INPAD_C)
+#define nh5tget_cset_c H5_FC_FUNC_(h5tget_cset_c, H5TGET_CSET_C)
+#define nh5tset_cset_c H5_FC_FUNC_(h5tset_cset_c, H5TSET_CSET_C)
+#define nh5tget_strpad_c H5_FC_FUNC_(h5tget_strpad_c, H5TGET_STRPAD_C)
+#define nh5tset_strpad_c H5_FC_FUNC_(h5tset_strpad_c, H5TSET_STRPAD_C)
+#define nh5tget_nmembers_c H5_FC_FUNC_(h5tget_nmembers_c, H5TGET_NMEMBERS_C)
+#define nh5tget_member_name_c H5_FC_FUNC_(h5tget_member_name_c, H5TGET_MEMBER_NAME_C)
+#define nh5tget_member_offset_c H5_FC_FUNC_(h5tget_member_offset_c, H5TGET_MEMBER_OFFSET_C)
+#define nh5tget_member_dims_c H5_FC_FUNC_(h5tget_member_dims_c, H5TGET_MEMBER_DIMS_C)
+#define nh5tget_member_type_c H5_FC_FUNC_(h5tget_member_type_c, H5TGET_MEMBER_TYPE_C)
+#define nh5tget_member_index_c H5_FC_FUNC_(h5tget_member_index_c, H5TGET_MEMBER_INDEX_C)
+#define nh5tinsert_c H5_FC_FUNC_(h5tinsert_c, H5TINSERT_C)
+#define nh5tcreate_c H5_FC_FUNC_(h5tcreate_c, H5TCREATE_C)
+#define nh5tpack_c H5_FC_FUNC_(h5tpack_c, H5TPACK_C)
+#define nh5tinsert_array_c H5_FC_FUNC_(h5tinsert_array_c, H5TINSERT_ARRAY_C)
+#define nh5tinsert_array_c2 H5_FC_FUNC_(h5tinsert_array_c2, H5TINSERT_ARRAY_C2)
+#define nh5tenum_create_c H5_FC_FUNC_(h5tenum_create_c, H5TENUM_CREATE_C)
+#define nh5tenum_insert_c H5_FC_FUNC_(h5tenum_insert_c, H5TENUM_INSERT_C)
+#define nh5tenum_nameof_c H5_FC_FUNC_(h5tenum_nameof_c, H5TENUM_NAMEOF_C)
+#define nh5tenum_valueof_c H5_FC_FUNC_(h5tenum_valueof_c, H5TENUM_VALUEOF_C)
+#define nh5tget_member_value_c H5_FC_FUNC_(h5tget_member_value_c, H5TGET_MEMBER_VALUE_C)
+#define nh5tset_tag_c H5_FC_FUNC_(h5tset_tag_c, H5TSET_TAG_C)
+#define nh5tget_tag_c H5_FC_FUNC_(h5tget_tag_c, H5TGET_TAG_C)
+#define nh5tarray_create_c H5_FC_FUNC_(h5tarray_create_c, H5TARRAY_CREATE_C)
+#define nh5tget_array_ndims_c H5_FC_FUNC_(h5tget_array_ndims_c, H5TGET_ARRAY_NDIMS_C)
+#define nh5tget_array_dims_c H5_FC_FUNC_(h5tget_array_dims_c, H5TGET_ARRAY_DIMS_C)
+#define nh5tget_super_c H5_FC_FUNC_(h5tget_super_c, H5TGET_SUPER_C)
+#define nh5tvlen_create_c H5_FC_FUNC_(h5tvlen_create_c, H5TVLEN_CREATE_C)
+#define nh5tis_variable_str_c H5_FC_FUNC_(h5tis_variable_str_c, H5TIS_VARIABLE_STR_C)
+#define nh5tget_member_class_c H5_FC_FUNC_(h5tget_member_class_c, H5TGET_MEMBER_CLASS_C)
+#define nh5tcommit_anon_c H5_FC_FUNC_(h5tcommit_anon_c, H5TCOMMIT_ANON_C)
+#define nh5tdecode_c H5_FC_FUNC_(h5tdecode_c, H5TDECODE_C)
+#define nh5tencode_c H5_FC_FUNC_(h5tencode_c, H5TENCODE_C)
+#define nh5tget_create_plist_c H5_FC_FUNC_(h5tget_create_plist_c, H5TGET_CREATE_PLIST_C)
+#define nh5tcompiler_conv_c H5_FC_FUNC_(h5tcompiler_conv_c, H5TCOMPILER_CONV_C)
+#define nh5tget_native_type_c H5_FC_FUNC_(h5tget_native_type_c, H5TGET_NATIVE_TYPE_C )
+
+H5_FCDLL int_f nh5tcreate_c(int_f *cls, size_t_f *size, hid_t_f *type_id);
+H5_FCDLL int_f nh5topen_c (hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *type_id, hid_t_f *tapl_id );
+H5_FCDLL int_f nh5tcommit_c (hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *type_id, hid_t_f *lcpl_id, hid_t_f *tcpl_id, hid_t_f *tapl_id);
+H5_FCDLL int_f nh5tclose_c ( hid_t_f *type_id );
+H5_FCDLL int_f nh5tequal_c ( hid_t_f *type1_id , hid_t_f *type2_id, int_f *c_flag);
+H5_FCDLL int_f nh5tcopy_c ( hid_t_f *type_id , hid_t_f *new_type_id);
+H5_FCDLL int_f nh5tget_class_c ( hid_t_f *type_id , int_f *classtype);
+H5_FCDLL int_f nh5tget_order_c ( hid_t_f *type_id , int_f *order);
+H5_FCDLL int_f nh5tset_order_c ( hid_t_f *type_id , int_f *order);
+H5_FCDLL int_f nh5tget_size_c ( hid_t_f *type_id , size_t_f *size);
+H5_FCDLL int_f nh5tset_size_c ( hid_t_f *type_id , size_t_f *size);
+H5_FCDLL int_f nh5tcommitted_c (hid_t_f *dtype_id);
+H5_FCDLL int_f nh5tget_precision_c ( hid_t_f *type_id , size_t_f *precision);
+H5_FCDLL int_f nh5tset_precision_c ( hid_t_f *type_id , size_t_f *precision);
+H5_FCDLL int_f nh5tget_offset_c ( hid_t_f *type_id , size_t_f *offset);
+H5_FCDLL int_f nh5tset_offset_c ( hid_t_f *type_id , size_t_f *offset);
+H5_FCDLL int_f nh5tget_pad_c ( hid_t_f *type_id , int_f * lsbpad, int_f * msbpad);
+H5_FCDLL int_f nh5tset_pad_c ( hid_t_f *type_id, int_f * lsbpad, int_f * msbpad );
+H5_FCDLL int_f nh5tget_sign_c ( hid_t_f *type_id , int_f* sign);
+H5_FCDLL int_f nh5tset_sign_c ( hid_t_f *type_id , int_f *sign);
+H5_FCDLL int_f nh5tget_fields_c ( hid_t_f *type_id, size_t_f *spos, size_t_f *epos, size_t_f* esize, size_t_f* mpos, size_t_f* msize);
+H5_FCDLL int_f nh5tset_fields_c ( hid_t_f *type_id, size_t_f *spos, size_t_f *epos, size_t_f* esize, size_t_f* mpos, size_t_f* msize);
+H5_FCDLL int_f nh5tget_ebias_c ( hid_t_f *type_id , size_t_f *ebias);
+H5_FCDLL int_f nh5tset_ebias_c ( hid_t_f *type_id , size_t_f *ebias);
+H5_FCDLL int_f nh5tget_norm_c ( hid_t_f *type_id , int_f *norm);
+H5_FCDLL int_f nh5tset_norm_c ( hid_t_f *type_id , int_f *norm);
+H5_FCDLL int_f nh5tget_inpad_c ( hid_t_f *type_id, int_f * padtype);
+H5_FCDLL int_f nh5tset_inpad_c ( hid_t_f *type_id, int_f * padtype);
+H5_FCDLL int_f nh5tget_cset_c ( hid_t_f *type_id, int_f * cset);
+H5_FCDLL int_f nh5tset_cset_c ( hid_t_f *type_id, int_f * cset);
+H5_FCDLL int_f nh5tget_strpad_c ( hid_t_f *type_id, int_f * strpad);
+H5_FCDLL int_f nh5tset_strpad_c ( hid_t_f *type_id, int_f * strpad);
+H5_FCDLL int_f nh5tget_nmembers_c ( hid_t_f *type_id , int_f * num_members);
+H5_FCDLL int_f nh5tget_member_name_c ( hid_t_f *type_id ,int_f* idx, _fcd member_name, int_f *namelen);
+H5_FCDLL int_f nh5tget_member_dims_c ( hid_t_f *type_id ,int_f* field_idx, int_f * dims, size_t_f * field_dims, int_f * perm );
+H5_FCDLL int_f nh5tget_member_offset_c ( hid_t_f *type_id ,int_f* member_no, size_t_f* offset);
+H5_FCDLL int_f nh5tget_member_type_c ( hid_t_f *type_id ,int_f* field_idx, hid_t_f * datatype);
+H5_FCDLL int_f nh5tget_member_index_c ( hid_t_f *type_id ,_fcd name, int_f* namelen, int_f *idx);
+H5_FCDLL int_f nh5tinsert_c(hid_t_f *type_id, _fcd name, int_f* namelen, size_t_f *offset, hid_t_f * field_id);
+H5_FCDLL int_f nh5tpack_c(hid_t_f * type_id);
+H5_FCDLL int_f nh5tinsert_array_c(hid_t_f * parent_id, _fcd name, int_f* namelen, size_t_f* offset, int_f* ndims, size_t_f* dims, hid_t_f* member_id, int_f* perm );
+H5_FCDLL int_f nh5tinsert_array_c2(hid_t_f * parent_id, _fcd name, int_f* namelen, size_t_f* offset, int_f* ndims, size_t_f* dims, hid_t_f* member_id);
+H5_FCDLL int_f nh5tenum_create_c ( hid_t_f *parent_id , hid_t_f *new_type_id);
+H5_FCDLL int_f nh5tenum_insert_c(hid_t_f *type_id, _fcd name, int_f* namelen, int_f* value);
+H5_FCDLL int_f nh5tenum_nameof_c(hid_t_f *type_id, int_f* value, _fcd name, size_t_f* namelen);
+H5_FCDLL int_f nh5tenum_valueof_c(hid_t_f *type_id, _fcd name, int_f* namelen, int_f* value);
+H5_FCDLL int_f nh5tget_member_value_c(hid_t_f *type_id, int_f* member_no, int_f* value);
+H5_FCDLL int_f nh5tset_tag_c(hid_t_f* type_id, _fcd tag, int_f* namelen);
+H5_FCDLL int_f nh5tget_tag_c(hid_t_f* type_id, _fcd tag, size_t_f* tag_size, int_f* namelen);
+H5_FCDLL int_f nh5tarray_create_c(hid_t_f * base_id, int_f *rank, hsize_t_f* dims, hid_t_f* type_id);
+H5_FCDLL int_f nh5tget_array_dims_c ( hid_t_f *type_id , hsize_t_f * dims);
+H5_FCDLL int_f nh5tget_array_ndims_c ( hid_t_f *type_id , int_f * ndims);
+H5_FCDLL int_f nh5tget_super_c ( hid_t_f *type_id , hid_t_f *base_type_id);
+H5_FCDLL int_f nh5tvlen_create_c ( hid_t_f *type_id , hid_t_f *vltype_id);
+H5_FCDLL int_f nh5tis_variable_str_c ( hid_t_f *type_id , int_f *flag );
+H5_FCDLL int_f nh5tget_member_class_c ( hid_t_f *type_id , int_f *member_no, int_f *cls );
+H5_FCDLL int_f nh5tcommit_anon_c(hid_t_f *loc_id, hid_t_f *dtype_id, hid_t_f *tcpl_id, hid_t_f *tapl_id);
+H5_FCDLL int_f nh5tdecode_c ( _fcd buf, hid_t_f *obj_id );
+H5_FCDLL int_f nh5tencode_c (_fcd buf, hid_t_f *obj_id, size_t_f *nalloc );
+H5_FCDLL int_f nh5tget_create_plist_c ( hid_t_f *dtype_id, hid_t_f *dtpl_id);
+H5_FCDLL int_f nh5tcompiler_conv_c ( hid_t_f *src_id, hid_t_f *dst_id, int_f *c_flag);
+H5_FCDLL int_f nh5tget_native_type_c(hid_t_f *dtype_id, int_f *direction, hid_t_f *native_dtype_id);
+H5_FCDLL int_f nh5tconvert_c(hid_t_f *src_id, hid_t_f *dst_id, size_t_f *nelmts, void *buf, void *background, hid_t_f *plist_id);
+
+
+/*
+ * Functions from H5Of.c
+ */
+
+#define nh5olink_c H5_FC_FUNC_(h5olink_c, H5OLINK_C)
+#define nh5oopen_c H5_FC_FUNC_(h5oopen_c, H5OOPEN_C)
+#define nh5oclose_c H5_FC_FUNC_(h5oclose_c, H5OCLOSE_C)
+#define nh5ovisit_c H5_FC_FUNC_(h5ovisit_c, H5OVISIT_C)
+#define nh5ovisit_by_name_c H5_FC_FUNC_(h5ovisit_by_name_c, H5OVISIT_BY_NAME_C)
+#define nh5oget_info_c H5_FC_FUNC_(h5oget_info_c, H5OGET_INFO_C)
+#define nh5oget_info_by_idx_c H5_FC_FUNC_(h5oget_info_by_idx_c ,H5OGET_INFO_BY_IDX_C)
+#define nh5oget_info_by_name_c H5_FC_FUNC_(h5oget_info_by_name_c ,H5OGET_INFO_BY_NAME_C)
+#define nh5oopen_by_addr_c H5_FC_FUNC_(h5oopen_by_addr_c, H5OOPEN_BY_ADDR_C)
+#define nh5ocopy_c H5_FC_FUNC_(h5ocopy_c, H5OCOPY_C)
+#define nh5odecr_refcount_c H5_FC_FUNC_(h5odecr_refcount_c, H5ODECR_REFCOUNT_C)
+#define nh5oincr_refcount_c H5_FC_FUNC_(h5oincr_refcount_c, H5OINCR_REFCOUNT_C)
+#define nh5oexists_by_name_c H5_FC_FUNC_(h5oexists_by_name_c, H5OEXISTS_BY_NAME_C)
+#define nh5oset_comment_c H5_FC_FUNC_(h5oset_comment_c, H5OSET_COMMENT_C)
+#define nh5oset_comment_by_name_c H5_FC_FUNC_(h5oset_comment_by_name_c, H5OSET_COMMENT_BY_NAME_C)
+#define nh5oopen_by_idx_c H5_FC_FUNC_(h5oopen_by_idx_c, H5OOPEN_BY_IDX_C)
+#define nh5oget_comment_c H5_FC_FUNC_(h5oget_comment_c, H5OGET_COMMENT_C)
+#define nh5oget_comment_by_name_c H5_FC_FUNC_(h5oget_comment_by_name_c, H5OGET_COMMENT_BY_NAME_C)
+
+H5_FCDLL int_f nh5oopen_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, hid_t_f *obj_id);
+H5_FCDLL int_f nh5oclose_c (hid_t_f *object_id );
+H5_FCDLL int_f nh5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id);
+H5_FCDLL int_f nh5olink_c (hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen,
+ hid_t_f *lcpl_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5ovisit_c (hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data);
+H5_FCDLL int_f nh5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order,
+ H5O_iterate_t op, void *op_data, hid_t_f *lapl_id );
+H5_FCDLL int_f nh5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info);
+H5_FCDLL int_f nh5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info);
+H5_FCDLL int_f nh5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id,
+ H5O_info_t_f *object_info);
+H5_FCDLL int_f nh5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len,
+ hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len,
+ hid_t_f *ocpypl_id, hid_t_f *lcpl_id );
+H5_FCDLL int_f nh5odecr_refcount_c (hid_t_f *object_id);
+H5_FCDLL int_f nh5oincr_refcount_c (hid_t_f *object_id);
+H5_FCDLL int_f nh5oexists_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oset_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentlen);
+H5_FCDLL int_f nh5oset_comment_by_name_c (hid_t_f *object_id, _fcd name, size_t_f *namelen, _fcd comment, size_t_f *commentlen, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oopen_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5oget_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssize_t_f *bufsize);
+H5_FCDLL int_f nh5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size,
+ _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id);
+/*
+ * Functions from H5Pf.c
+ */
+#define nh5pcreate_c H5_FC_FUNC_(h5pcreate_c, H5PCREATE_C)
+#define nh5pclose_c H5_FC_FUNC_(h5pclose_c, H5PCLOSE_C)
+#define nh5pcopy_c H5_FC_FUNC_(h5pcopy_c, H5PCOPY_C)
+#define nh5pequal_c H5_FC_FUNC_(h5pequal_c, H5PEQUAL_C)
+#define nh5pget_class_c H5_FC_FUNC_(h5pget_class_c, H5PGET_CLASS_C)
+#define nh5pset_deflate_c H5_FC_FUNC_(h5pset_deflate_c, H5PSET_DEFLATE_C)
+#define nh5pset_preserve_c H5_FC_FUNC_(h5pset_preserve_c, H5PSET_PRESERVE_C)
+#define nh5pget_preserve_c H5_FC_FUNC_(h5pget_preserve_c, H5PGET_PRESERVE_C)
+#define nh5pset_chunk_c H5_FC_FUNC_(h5pset_chunk_c, H5PSET_CHUNK_C)
+#define nh5pget_chunk_c H5_FC_FUNC_(h5pget_chunk_c, H5PGET_CHUNK_C)
+#define nh5pset_file_image_c H5_FC_FUNC_(h5pset_file_image_c,H5PSET_FILE_IMAGE_C)
+#define nh5pset_fill_valuec_c H5_FC_FUNC_(h5pset_fill_valuec_c, H5PSET_FILL_VALUEC_C)
+#define nh5pset_fill_value_c H5_FC_FUNC_(h5pset_fill_value_c, H5PSET_FILL_VALUE_C)
+#define nh5pset_fill_value_integer_c H5_FC_FUNC_(h5pset_fill_value_integer_c, H5PSET_FILL_VALUE_INTEGER_C)
+#define nh5pset_fill_value_real_c H5_FC_FUNC_(h5pset_fill_value_real_c, H5PSET_FILL_VALUE_REAL_C)
+#define nh5pset_fill_value_double_c H5_FC_FUNC_(h5pset_fill_value_double_c, H5PSET_FILL_VALUE_DOUBLE_C)
+#define nh5pget_file_image_c H5_FC_FUNC_(h5pget_file_image_c,H5PGET_FILE_IMAGE_C)
+#define nh5pget_fill_valuec_c H5_FC_FUNC_(h5pget_fill_valuec_c, H5PGET_FILL_VALUEC_C)
+#define nh5pget_fill_value_c H5_FC_FUNC_(h5pget_fill_value_c, H5PGET_FILL_VALUE_C)
+#define nh5pget_fill_value_integer_c H5_FC_FUNC_(h5pget_fill_value_integer_c, H5PGET_FILL_VALUE_INTEGER_C)
+#define nh5pget_fill_value_real_c H5_FC_FUNC_(h5pget_fill_value_real_c, H5PGET_FILL_VALUE_REAL_C)
+#define nh5pget_fill_value_double_c H5_FC_FUNC_(h5pget_fill_value_double_c, H5PGET_FILL_VALUE_DOUBLE_C)
+#define nh5pget_version_c H5_FC_FUNC_(h5pget_version_c, H5PGET_VERSION_C)
+#define nh5pget_userblock_c H5_FC_FUNC_(h5pget_userblock_c, H5PGET_USERBLOCK_C)
+#define nh5pset_userblock_c H5_FC_FUNC_(h5pset_userblock_c, H5PSET_USERBLOCK_C)
+#define nh5pset_sizes_c H5_FC_FUNC_(h5pset_sizes_c, H5PSET_SIZES_C)
+#define nh5pget_sizes_c H5_FC_FUNC_(h5pget_sizes_c, H5PGET_SIZES_C)
+#define nh5pget_sym_k_c H5_FC_FUNC_(h5pget_sym_k_c, H5PGET_SYM_K_C)
+#define nh5pset_sym_k_c H5_FC_FUNC_(h5pset_sym_k_c, H5PSET_SYM_K_C)
+#define nh5pget_istore_k_c H5_FC_FUNC_(h5pget_istore_k_c, H5PGET_ISTORE_K_C)
+#define nh5pset_istore_k_c H5_FC_FUNC_(h5pset_istore_k_c, H5PSET_ISTORE_K_C)
+#define nh5pget_driver_c H5_FC_FUNC_(h5pget_driver_c, H5PGET_DRIVER_C)
+#define nh5pset_fapl_stdio_c H5_FC_FUNC_(h5pset_fapl_stdio_c, H5PSET_FAPL_STDIO_C)
+#define nh5pget_fapl_stdio_c H5_FC_FUNC_(h5pget_fapl_stdio_c, H5PGET_FAPL_STDIO_C)
+#define nh5pset_fapl_sec2_c H5_FC_FUNC_(h5pset_fapl_sec2_c, H5PSET_FAPL_SEC2_C)
+#define nh5pget_fapl_sec2_c H5_FC_FUNC_(h5pget_fapl_sec2_c, H5PGET_FAPL_SEC2_C)
+#define nh5pset_alignment_c H5_FC_FUNC_(h5pset_alignment_c, H5PSET_ALIGNMENT_C)
+#define nh5pget_alignment_c H5_FC_FUNC_(h5pget_alignment_c, H5PGET_ALIGNMENT_C)
+#define nh5pset_fapl_core_c H5_FC_FUNC_(h5pset_fapl_core_c, H5PSET_FAPL_CORE_C)
+#define nh5pget_fapl_core_c H5_FC_FUNC_(h5pget_fapl_core_c, H5PGET_FAPL_CORE_C)
+#define nh5pset_fapl_family_c H5_FC_FUNC_(h5pset_fapl_family_c, H5PSET_FAPL_FAMILY_C)
+#define nh5pget_fapl_family_c H5_FC_FUNC_(h5pget_fapl_family_c, H5PGET_FAPL_FAMILY_C)
+#define nh5pset_cache_c H5_FC_FUNC_(h5pset_cache_c, H5PSET_CACHE_C)
+#define nh5pget_cache_c H5_FC_FUNC_(h5pget_cache_c, H5PGET_CACHE_C)
+#define nh5pset_fapl_split_c H5_FC_FUNC_(h5pset_fapl_split_c, H5PSET_FAPL_SPLIT_C)
+#define nh5pget_fapl_split_c H5_FC_FUNC_(h5pget_fapl_split_c, H5PGET_FAPL_SPLIT_C)
+#define nh5pset_gc_references_c H5_FC_FUNC_(h5pset_gc_references_c, H5PSET_GC_REFERENCES_C)
+#define nh5pget_gc_references_c H5_FC_FUNC_(h5pget_gc_references_c, H5PGET_GC_REFERENCES_C)
+#define nh5pset_layout_c H5_FC_FUNC_(h5pset_layout_c, H5PSET_LAYOUT_C)
+#define nh5pget_layout_c H5_FC_FUNC_(h5pget_layout_c, H5PGET_LAYOUT_C)
+#define nh5pset_filter_c H5_FC_FUNC_(h5pset_filter_c, H5PSET_FILTER_C)
+#define nh5premove_filter_c H5_FC_FUNC_(h5premove_filter_c, H5PREMOVE_FILTER_C)
+#define nh5pmodify_filter_c H5_FC_FUNC_(h5pmodify_filter_c, H5PMODIFY_FILTER_C)
+#define nh5pget_nfilters_c H5_FC_FUNC_(h5pget_nfilters_c, H5PGET_NFILTERS_C)
+#define nh5pget_filter_c H5_FC_FUNC_(h5pget_filter_c, H5PGET_FILTER_C)
+#define nh5pget_filter_by_id_c H5_FC_FUNC_(h5pget_filter_by_id_c, H5PGET_FILTER_BY_ID_C)
+#define nh5pset_external_c H5_FC_FUNC_(h5pset_external_c, H5PSET_EXTERNAL_C)
+#define nh5pget_external_count_c H5_FC_FUNC_(h5pget_external_count_c, H5PGET_EXTERNAL_COUNT_C)
+#define nh5pget_external_c H5_FC_FUNC_(h5pget_external_c, H5PGET_EXTERNAL_C)
+#define nh5pget_btree_ratios_c H5_FC_FUNC_(h5pget_btree_ratios_c, H5PGET_BTREE_RATIOS_C)
+#define nh5pset_btree_ratios_c H5_FC_FUNC_(h5pset_btree_ratios_c, H5PSET_BTREE_RATIOS_C)
+#define nh5pset_fapl_mpio_c H5_FC_FUNC_(h5pset_fapl_mpio_c, H5PSET_FAPL_MPIO_C)
+#define nh5pget_fapl_mpio_c H5_FC_FUNC_(h5pget_fapl_mpio_c, H5PGET_FAPL_MPIO_C)
+#define nh5pset_dxpl_mpio_c H5_FC_FUNC_(h5pset_dxpl_mpio_c, H5PSET_DXPL_MPIO_C)
+#define nh5pget_dxpl_mpio_c H5_FC_FUNC_(h5pget_dxpl_mpio_c, H5PGET_DXPL_MPIO_C)
+#define nh5pget_fclose_degree_c H5_FC_FUNC_(h5pget_fclose_degree_c, H5PGET_FCLOSE_DEGREE_C)
+#define nh5pset_fclose_degree_c H5_FC_FUNC_(h5pset_fclose_degree_c, H5PSET_FCLOSE_DEGREE_C)
+#define nh5pset_buffer_c H5_FC_FUNC_(h5pset_buffer_c, H5PSET_BUFFER_C)
+#define nh5pget_buffer_c H5_FC_FUNC_(h5pget_buffer_c, H5PGET_BUFFER_C)
+#define nh5pfill_value_defined_c H5_FC_FUNC_(h5pfill_value_defined_c, H5PFILL_VALUE_DEFINED_C)
+#define nh5pset_alloc_time_c H5_FC_FUNC_(h5pset_alloc_time_c, H5PSET_ALLOC_TIME_C)
+#define nh5pget_alloc_time_c H5_FC_FUNC_(h5pget_alloc_time_c, H5PGET_ALLOC_TIME_C)
+#define nh5pset_fill_time_c H5_FC_FUNC_(h5pset_fill_time_c, H5PSET_FILL_TIME_C)
+#define nh5pget_fill_time_c H5_FC_FUNC_(h5pget_fill_time_c, H5PGET_FILL_TIME_C)
+#define nh5pset_meta_block_size_c H5_FC_FUNC_(h5pset_meta_block_size_c, H5PSET_META_BLOCK_SIZE_C)
+#define nh5pget_meta_block_size_c H5_FC_FUNC_(h5pget_meta_block_size_c, H5PGET_META_BLOCK_SIZE_C)
+#define nh5pset_sieve_buf_size_c H5_FC_FUNC_(h5pset_sieve_buf_size_c, H5PSET_SIEVE_BUF_SIZE_C)
+#define nh5pget_sieve_buf_size_c H5_FC_FUNC_(h5pget_sieve_buf_size_c, H5PGET_SIEVE_BUF_SIZE_C)
+#define nh5pset_hyper_vector_size_c H5_FC_FUNC_(h5pset_hyper_vector_size_c, H5PSET_HYPER_VECTOR_SIZE_C)
+#define nh5pget_hyper_vector_size_c H5_FC_FUNC_(h5pget_hyper_vector_size_c, H5PGET_HYPER_VECTOR_SIZE_C)
+#define nh5pset_small_data_block_size_c H5_FC_FUNC_(h5pset_small_data_block_size_c, H5PSET_SMALL_DATA_BLOCK_SIZE_C)
+#define nh5pget_small_data_block_size_c H5_FC_FUNC_(h5pget_small_data_block_size_c, H5PGET_SMALL_DATA_BLOCK_SIZE_C)
+#define nh5pcreate_class_c H5_FC_FUNC_(h5pcreate_class_c, H5PCREATE_CLASS_C)
+#define nh5pregister_c H5_FC_FUNC_(h5pregister_c, H5PREGISTER_C)
+#define nh5pregister_integer_c H5_FC_FUNC_(h5pregister_integer_c, H5PREGISTER_INTEGER_C)
+#define nh5pregister_real_c H5_FC_FUNC_(h5pregister_real_c, H5PREGISTER_REAL_C)
+#define nh5pregister_double_c H5_FC_FUNC_(h5pregister_double_c, H5PREGISTER_DOUBLE_C)
+#define nh5pregisterc_c H5_FC_FUNC_(h5pregisterc_c, H5PREGISTERC_C)
+#define nh5pinsert_c H5_FC_FUNC_(h5pinsert_c, H5PINSERT_C)
+#define nh5pinsert_integer_c H5_FC_FUNC_(h5pinsert_integer_c, H5PINSERT_INTEGER_C)
+#define nh5pinsert_real_c H5_FC_FUNC_(h5pinsert_real_c, H5PINSERT_REAL_C)
+#define nh5pinsert_double_c H5_FC_FUNC_(h5pinsert_double_c, H5PINSERT_DOUBLE_C)
+#define nh5pinsertc_c H5_FC_FUNC_(h5pinsertc_c, H5PINSERTC_C)
+#define nh5pset_c H5_FC_FUNC_(h5pset_c, H5PSET_C)
+#define nh5pset_integer_c H5_FC_FUNC_(h5pset_integer_c, H5PSET_INTEGER_C)
+#define nh5pset_real_c H5_FC_FUNC_(h5pset_real_c, H5PSET_REAL_C)
+#define nh5pset_double_c H5_FC_FUNC_(h5pset_double_c, H5PSET_DOUBLE_C)
+#define nh5psetc_c H5_FC_FUNC_(h5psetc_c, H5PSETC_C)
+#define nh5pget_c H5_FC_FUNC_(h5pget_c, H5PGET_C)
+#define nh5pget_integer_c H5_FC_FUNC_(h5pget_integer_c, H5PGET_INTEGER_C)
+#define nh5pget_real_c H5_FC_FUNC_(h5pget_real_c, H5PGET_REAL_C)
+#define nh5pget_double_c H5_FC_FUNC_(h5pget_double_c, H5PGET_DOUBLE_C)
+#define nh5pgetc_c H5_FC_FUNC_(h5pgetc_c, H5PGETC_C)
+#define nh5pexist_c H5_FC_FUNC_(h5pexist_c, H5PEXIST_C)
+#define nh5pget_size_c H5_FC_FUNC_(h5pget_size_c, H5PGET_SIZE_C)
+#define nh5pget_nprops_c H5_FC_FUNC_(h5pget_nprops_c, H5PGET_NPROPS_C)
+#define nh5pget_class_parent_c H5_FC_FUNC_(h5pget_class_parent_c, H5PGET_CLASS_PARENT_C)
+#define nh5pisa_class_c H5_FC_FUNC_(h5pisa_class_c, H5PISA_CLASS_C)
+#define nh5pcopy_prop_c H5_FC_FUNC_(h5pcopy_prop_c, H5PCOPY_PROP_C)
+#define nh5premove_c H5_FC_FUNC_(h5premove_c, H5PREMOVE_C)
+#define nh5punregister_c H5_FC_FUNC_(h5punregister_c, H5PUNREGISTER_C)
+#define nh5pclose_class_c H5_FC_FUNC_(h5pclose_class_c, H5PCLOSE_CLASS_C)
+#define nh5pget_class_name_c H5_FC_FUNC_(h5pget_class_name_c, H5PGET_CLASS_NAME_C)
+#define nh5pset_shuffle_c H5_FC_FUNC_(h5pset_shuffle_c, H5PSET_SHUFFLE_C)
+#define nh5pset_fletcher32_c H5_FC_FUNC_(h5pset_fletcher32_c, H5PSET_FLETCHER32_C)
+#define nh5pset_edc_check_c H5_FC_FUNC_(h5pset_edc_check_c, H5PSET_EDC_CHECK_C)
+#define nh5pget_edc_check_c H5_FC_FUNC_(h5pget_edc_check_c, H5PGET_EDC_CHECK_C)
+#define nh5pset_family_offset_c H5_FC_FUNC_(h5pset_family_offset_c, H5PSET_FAMILY_OFFSET_C)
+#define nh5pget_fapl_multi_c H5_FC_FUNC_(h5pget_fapl_multi_c, H5PGET_FAPL_MULTI_C)
+#define nh5pset_fapl_multi_c H5_FC_FUNC_(h5pset_fapl_multi_c, H5PSET_FAPL_MULTI_C)
+#define nh5pset_fapl_multi_sc H5_FC_FUNC_(h5pset_fapl_multi_sc, H5PSET_FAPL_MULTI_SC)
+#define nh5pset_szip_c H5_FC_FUNC_(h5pset_szip_c, H5PSET_SZIP_C)
+#define nh5pall_filters_avail_c H5_FC_FUNC_(h5pall_filters_avail_c, H5PALL_FILTERS_AVAIL_C)
+#define nh5pget_attr_phase_change_c H5_FC_FUNC_(h5pget_attr_phase_change_c, H5PGET_ATTR_PHASE_CHANGE_C)
+#define nh5pset_attr_creation_order_c H5_FC_FUNC_(h5pset_attr_creation_order_c, H5PSET_ATTR_CREATION_ORDER_C)
+#define nh5pset_shared_mesg_nindexes_c H5_FC_FUNC_(h5pset_shared_mesg_nindexes_c, H5PSET_SHARED_MESG_NINDEXES_C)
+#define nh5pset_shared_mesg_index_c H5_FC_FUNC_(h5pset_shared_mesg_index_c,H5PSET_SHARED_MESG_INDEX_C)
+#define nh5pget_attr_creation_order_c H5_FC_FUNC_(h5pget_attr_creation_order_c,H5PGET_ATTR_CREATION_ORDER_C)
+#define nh5pset_libver_bounds_c H5_FC_FUNC_(h5pset_libver_bounds_c,H5PSET_LIBVER_BOUNDS_C)
+#define nh5pset_link_creation_order_c H5_FC_FUNC_(h5pset_link_creation_order_c, H5PSET_LINK_CREATION_ORDER_C)
+#define nh5pget_link_phase_change_c H5_FC_FUNC_(h5pget_link_phase_change_c, H5PGET_LINK_PHASE_CHANGE_C)
+#define nh5pget_obj_track_times_c H5_FC_FUNC_(h5pget_obj_track_times_c, H5PGET_OBJ_TRACK_TIMES_C)
+#define nh5pset_obj_track_times_c H5_FC_FUNC_(h5pset_obj_track_times_c, H5PSET_OBJ_TRACK_TIMES_C)
+#define nh5pset_create_inter_group_c H5_FC_FUNC_(h5pset_create_inter_group_c,H5PSET_CREATE_INTER_GROUP_C)
+#define nh5pget_create_inter_group_c H5_FC_FUNC_(h5pget_create_inter_group_c,H5PGET_CREATE_INTER_GROUP_C)
+#define nh5pget_link_creation_order_c H5_FC_FUNC_(h5pget_link_creation_order_c,H5PGET_LINK_CREATION_ORDER_C)
+#define nh5pset_char_encoding_c H5_FC_FUNC_(h5pset_char_encoding_c, H5PSET_CHAR_ENCODING_C)
+#define nh5pget_char_encoding_c H5_FC_FUNC_(h5pget_char_encoding_c, H5PGET_CHAR_ENCODING_C)
+#define nh5pset_copy_object_c H5_FC_FUNC_(h5pset_copy_object_c, H5PSET_COPY_OBJECT_C)
+#define nh5pget_copy_object_c H5_FC_FUNC_(h5pget_copy_object_c, H5PGET_COPY_OBJECT_C)
+#define nh5pget_data_transform_c H5_FC_FUNC_(h5pget_data_transform_c, H5PGET_DATA_TRANSFORM_C)
+#define nh5pset_data_transform_c H5_FC_FUNC_(h5pset_data_transform_c, H5PSET_DATA_TRANSFORM_C)
+#define nh5pget_local_heap_size_hint_c H5_FC_FUNC_(h5pget_local_heap_size_hint_c, H5PGET_LOCAL_HEAP_SIZE_HINT_C)
+#define nh5pget_est_link_info_c H5_FC_FUNC_(h5pget_est_link_info_c,H5PGET_EST_LINK_INFO_C)
+#define nh5pset_est_link_info_c H5_FC_FUNC_(h5pset_est_link_info_c,H5PSET_EST_LINK_INFO_C)
+#define nh5pset_local_heap_size_hint_c H5_FC_FUNC_(h5pset_local_heap_size_hint_c, H5PSET_LOCAL_HEAP_SIZE_HINT_C)
+#define nh5pset_link_phase_change_c H5_FC_FUNC_(h5pset_link_phase_change_c, H5PSET_LINK_PHASE_CHANGE_C)
+#define nh5pset_fapl_direct_c H5_FC_FUNC_(h5pset_fapl_direct_c, H5PSET_FAPL_DIRECT_C)
+#define nh5pget_fapl_direct_c H5_FC_FUNC_(h5pget_fapl_direct_c, H5PGET_FAPL_DIRECT_C)
+#define nh5pset_attr_phase_change_c H5_FC_FUNC_(h5pset_attr_phase_change_c, H5PSET_ATTR_PHASE_CHANGE_C)
+#define nh5pset_nbit_c H5_FC_FUNC_(h5pset_nbit_c, H5PSET_NBIT_C)
+#define nh5pset_scaleoffset_c H5_FC_FUNC_(h5pset_scaleoffset_c, H5PSET_SCALEOFFSET_C)
+#define nh5pset_nlinks_c H5_FC_FUNC_(h5pset_nlinks_c, H5PSET_NLINKS_C)
+#define nh5pget_nlinks_c H5_FC_FUNC_(h5pget_nlinks_c, H5PGET_NLINKS_C)
+#define nh5pset_chunk_cache_c H5_FC_FUNC_(h5pset_chunk_cache_c, H5PSET_CHUNK_CACHE_C)
+#define nh5pget_chunk_cache_c H5_FC_FUNC_(h5pget_chunk_cache_c, H5PGET_CHUNK_CACHE_C)
+#define nh5pget_mpio_actual_io_mode_c H5_FC_FUNC_(h5pget_mpio_actual_io_mode_c, H5PGET_MPIO_ACTUAL_IO_MODE_C)
+
+H5_FCDLL int_f nh5pcreate_c ( hid_t_f *cls, hid_t_f *prp_id );
+H5_FCDLL int_f nh5pclose_c ( hid_t_f *prp_id );
+H5_FCDLL int_f nh5pcopy_c ( hid_t_f *prp_id , hid_t_f *new_prp_id);
+H5_FCDLL int_f nh5pequal_c ( hid_t_f *plist1_id , hid_t_f *plist2_id, int_f *c_flag);
+H5_FCDLL int_f nh5pget_class_c ( hid_t_f *prp_id , int_f *classtype);
+H5_FCDLL int_f nh5pset_deflate_c ( hid_t_f *prp_id , int_f *level);
+H5_FCDLL int_f nh5pset_chunk_c ( hid_t_f *prp_id, int_f *rank, hsize_t_f *dims );
+H5_FCDLL int_f nh5pget_chunk_c ( hid_t_f *prp_id, int_f *max_rank, hsize_t_f *dims );
+H5_FCDLL int_f nh5pset_file_image_c (hid_t_f *fapl_id, void *buf_ptr, size_t_f *buf_len);
+H5_FCDLL int_f nh5pset_fill_valuec_c (hid_t_f *prp_id, hid_t_f *type_id, _fcd fillvalue);
+H5_FCDLL int_f nh5pset_fill_value_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pset_fill_value_integer_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pset_fill_value_real_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pset_fill_value_double_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pget_file_image_c (hid_t_f *fapl_id, void **buf_ptr, size_t_f *buf_len);
+H5_FCDLL int_f nh5pget_fill_valuec_c (hid_t_f *prp_id, hid_t_f *type_id, _fcd fillvalue);
+H5_FCDLL int_f nh5pget_fill_value_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pget_fill_value_integer_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pget_fill_value_real_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pget_fill_value_double_c (hid_t_f *prp_id, hid_t_f *type_id, void *fillvalue);
+H5_FCDLL int_f nh5pset_preserve_c ( hid_t_f *prp_id , int_f *flag);
+H5_FCDLL int_f nh5pget_preserve_c ( hid_t_f *prp_id , int_f *flag);
+H5_FCDLL int_f nh5pget_version_c (hid_t_f *prp_id, int_f * boot,int_f * freelist, int_f * stab, int_f *shhdr);
+H5_FCDLL int_f nh5pset_userblock_c (hid_t_f *prp_id, hsize_t_f * size);
+H5_FCDLL int_f nh5pget_userblock_c (hid_t_f *prp_id, hsize_t_f * size);
+H5_FCDLL int_f nh5pget_sizes_c (hid_t_f *prp_id, size_t_f * sizeof_addr, size_t_f * sizeof_size);
+H5_FCDLL int_f nh5pset_sizes_c (hid_t_f *prp_id, size_t_f * sizeof_addr, size_t_f * sizeof_size);
+H5_FCDLL int_f nh5pset_sym_k_c (hid_t_f *prp_id, int_f* ik, int_f* lk);
+H5_FCDLL int_f nh5pget_sym_k_c (hid_t_f *prp_id, int_f* ik, int_f* lk);
+H5_FCDLL int_f nh5pset_istore_k_c (hid_t_f *prp_id, int_f* ik);
+H5_FCDLL int_f nh5pget_istore_k_c (hid_t_f *prp_id, int_f* ik);
+H5_FCDLL int_f nh5pget_driver_c (hid_t_f *prp_id, hid_t_f*driver);
+H5_FCDLL int_f nh5pset_fapl_stdio_c (hid_t_f *prp_id);
+H5_FCDLL int_f nh5pget_fapl_stdio_c (hid_t_f *prp_id, int_f* io);
+H5_FCDLL int_f nh5pset_fapl_sec2_c (hid_t_f *prp_id);
+H5_FCDLL int_f nh5pget_fapl_sec2_c (hid_t_f *prp_id, int_f* sec2);
+H5_FCDLL int_f nh5pset_alignment_c(hid_t_f *prp_id, hsize_t_f* threshold, hsize_t_f* alignment);
+H5_FCDLL int_f nh5pget_alignment_c(hid_t_f *prp_id, hsize_t_f* threshold, hsize_t_f* alignment);
+H5_FCDLL int_f nh5pget_fapl_core_c (hid_t_f *prp_id, size_t_f* increment, int_f *flag);
+H5_FCDLL int_f nh5pset_fapl_core_c (hid_t_f *prp_id, size_t_f* increment, int_f *flag);
+H5_FCDLL int_f nh5pset_fapl_family_c (hid_t_f *prp_id, hsize_t_f* memb_size, hid_t_f* memb_plist );
+H5_FCDLL int_f nh5pget_fapl_family_c (hid_t_f *prp_id, hsize_t_f* memb_size, hid_t_f* memb_plist );
+H5_FCDLL int_f nh5pset_cache_c(hid_t_f *prp_id, int_f* mdc_nelmts, size_t_f* rdcc_nelmts, size_t_f* rdcc_nbytes, real_f* rdcc_w0);
+H5_FCDLL int_f nh5pget_cache_c(hid_t_f *prp_id, int_f* mdc_nelmts, size_t_f* rdcc_nelmts, size_t_f* rdcc_nbytes, real_f* rdcc_w0);
+H5_FCDLL int_f nh5pget_fapl_split_c(hid_t_f *prp_id, size_t_f* meta_ext_size , _fcd meta_ext, hid_t_f* meta_plist, size_t_f* raw_ext_size, _fcd raw_ext, hid_t_f * raw_plist);
+H5_FCDLL int_f nh5pset_fapl_split_c(hid_t_f *prp_id, int_f* meta_len, _fcd meta_ext, hid_t_f* meta_plist, int_f* raw_len, _fcd raw_ext, hid_t_f * raw_plist);
+H5_FCDLL int_f nh5pset_gc_references_c(hid_t_f *prp_id, int_f* gc_references);
+H5_FCDLL int_f nh5pget_gc_references_c(hid_t_f *prp_id, int_f* gc_references);
+H5_FCDLL int_f nh5pset_layout_c (hid_t_f *prp_id, int_f* layout);
+H5_FCDLL int_f nh5pget_layout_c (hid_t_f *prp_id, int_f* layout);
+H5_FCDLL int_f nh5pset_filter_c (hid_t_f *prp_id, int_f* filter, int_f* flags, size_t_f* cd_nelmts, int_f* cd_values );
+H5_FCDLL int_f nh5premove_filter_c (hid_t_f *prp_id, int_f* filter);
+H5_FCDLL int_f nh5pmodify_filter_c (hid_t_f *prp_id, int_f* filter, int_f* flags, size_t_f* cd_nelmts, int_f* cd_values );
+H5_FCDLL int_f nh5pget_nfilters_c (hid_t_f *prp_id, int_f* nfilters);
+H5_FCDLL int_f nh5pget_filter_c(hid_t_f *prp_id, int_f* filter_number, int_f* flags, size_t_f* cd_nelmts, int_f* cd_values, size_t_f *namelen, _fcd name, int_f* filter_id);
+H5_FCDLL int_f nh5pget_filter_by_id_c(hid_t_f *prp_id, int_f* filter_id, int_f* flags, size_t_f* cd_nelmts, int_f* cd_values, size_t_f *namelen, _fcd name);
+H5_FCDLL int_f nh5pset_external_c (hid_t_f *prp_id, _fcd name, int_f* namelen, off_t_f* offset, hsize_t_f*bytes);
+H5_FCDLL int_f nh5pget_external_count_c (hid_t_f *prp_id, int_f* count);
+H5_FCDLL int_f nh5pget_external_c(hid_t_f *prp_id, int_f *idx, size_t_f* name_size, _fcd name, off_t_f* offset, hsize_t_f*bytes);
+H5_FCDLL int_f nh5pget_btree_ratios_c(hid_t_f *prp_id, real_f* left, real_f* middle, real_f* right);
+H5_FCDLL int_f nh5pset_btree_ratios_c(hid_t_f *prp_id, real_f* left, real_f* middle, real_f* right);
+H5_FCDLL int_f nh5pget_fapl_mpio_c(hid_t_f *prp_id, int_f* comm, int_f* info);
+H5_FCDLL int_f nh5pset_fapl_mpio_c(hid_t_f *prp_id, int_f* comm, int_f* info);
+H5_FCDLL int_f nh5pget_dxpl_mpio_c(hid_t_f *prp_id, int_f* data_xfer_mode);
+H5_FCDLL int_f nh5pset_dxpl_mpio_c(hid_t_f *prp_id, int_f* data_xfer_mode);
+H5_FCDLL int_f nh5pset_fclose_degree_c(hid_t_f *fapl, int_f *degree);
+H5_FCDLL int_f nh5pget_fclose_degree_c(hid_t_f *fapl, int_f *degree);
+H5_FCDLL int_f nh5pget_buffer_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pset_buffer_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pset_alloc_time_c(hid_t_f *plist, int_f *flag);
+H5_FCDLL int_f nh5pget_alloc_time_c(hid_t_f *plist, int_f *flag);
+H5_FCDLL int_f nh5pset_fill_time_c(hid_t_f *plist, int_f *flag);
+H5_FCDLL int_f nh5pget_fill_time_c(hid_t_f *plist, int_f *flag);
+H5_FCDLL int_f nh5pset_meta_block_size_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pget_meta_block_size_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pset_sieve_buf_size_c(hid_t_f *plist, size_t_f *size);
+H5_FCDLL int_f nh5pget_sieve_buf_size_c(hid_t_f *plist, size_t_f *size);
+H5_FCDLL int_f nh5pset_small_data_block_size_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pget_small_data_block_size_c(hid_t_f *plist, hsize_t_f *size);
+H5_FCDLL int_f nh5pset_hyper_vector_size_c(hid_t_f *plist, size_t_f *size);
+H5_FCDLL int_f nh5pget_hyper_vector_size_c(hid_t_f *plist, size_t_f *size);
+H5_FCDLL int_f nh5pcreate_class_c(hid_t_f *parent, _fcd name, int_f *name_len, hid_t_f *cls,
+ H5P_cls_create_func_t create, void *create_data,
+ H5P_cls_copy_func_t copy, void *copy_data,
+ H5P_cls_close_func_t close, void *close_data);
+H5_FCDLL int_f nh5pregister_c(hid_t_f *cls, _fcd name, int_f * name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pregister_integer_c(hid_t_f *cls, _fcd name, int_f * name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pregister_real_c(hid_t_f *cls, _fcd name, int_f * name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pregister_double_c(hid_t_f *cls, _fcd name, int_f * name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pregisterc_c(hid_t_f *cls, _fcd name, int_f * name_len, size_t_f *size, _fcd value, int_f *value_len);
+H5_FCDLL int_f nh5pinsert_c(hid_t_f *plist, _fcd name, int_f *name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pinsert_integer_c(hid_t_f *plist, _fcd name, int_f *name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pinsert_real_c(hid_t_f *plist, _fcd name, int_f *name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pinsert_double_c(hid_t_f *plist, _fcd name, int_f *name_len, size_t_f *size, void *value);
+H5_FCDLL int_f nh5pinsertc_c(hid_t_f *plist, _fcd name, int_f *name_len, size_t_f *size, _fcd value, int_f *value_len);
+H5_FCDLL int_f nh5pset_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pset_integer_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pset_real_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pset_double_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5psetc_c(hid_t_f *prp_id, _fcd name, int_f *name_len, _fcd value, int_f *value_len);
+H5_FCDLL int_f nh5pget_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pget_double_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pget_integer_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pget_real_c(hid_t_f *prp_id, _fcd name, int_f *name_len, void *value);
+H5_FCDLL int_f nh5pgetc_c(hid_t_f *prp_id, _fcd name, int_f *name_len, _fcd value, int_f *value_len);
+H5_FCDLL int_f nh5pexist_c(hid_t_f *prp_id, _fcd name, int_f *name_len);
+H5_FCDLL int_f nh5pget_size_c(hid_t_f *prp_id, _fcd name, int_f *name_len, size_t_f *size);
+H5_FCDLL int_f nh5pget_nprops_c(hid_t_f *prp_id, size_t_f *nprops);
+H5_FCDLL int_f nh5pget_class_parent_c(hid_t_f *prp_id, hid_t_f *parent_id);
+H5_FCDLL int_f nh5pisa_class_c(hid_t_f *plist, hid_t_f *pclass);
+H5_FCDLL int_f nh5pcopy_prop_c(hid_t_f *dst_id, hid_t_f *src_id, _fcd name, int_f *name_len);
+H5_FCDLL int_f nh5premove_c(hid_t_f *plid, _fcd name, int_f *name_len);
+H5_FCDLL int_f nh5punregister_c(hid_t_f *cls, _fcd name, int_f *name_len);
+H5_FCDLL int_f nh5pclose_class_c(hid_t_f * cls);
+H5_FCDLL int_f nh5pget_class_name_c(hid_t_f *prp_id, _fcd name, int_f *name_len);
+H5_FCDLL int_f nh5pset_shuffle_c ( hid_t_f *prp_id);
+H5_FCDLL int_f nh5pset_fletcher32_c ( hid_t_f *prp_id );
+H5_FCDLL int_f nh5pset_edc_check_c ( hid_t_f *prp_id, int_f *flag );
+H5_FCDLL int_f nh5pget_edc_check_c ( hid_t_f *prp_id, int_f *flag );
+H5_FCDLL int_f nh5pset_family_offset_c ( hid_t_f *prp_id , hsize_t_f *offset);
+H5_FCDLL int_f nh5pget_fapl_multi_c ( hid_t_f *prp_id , int_f *mem_map, hid_t_f *memb_fapl, _fcd memb_name, int_f *len, int_f *lenmax, real_f *memb_addr, int_f *flag, int_f *maxlen_out);
+H5_FCDLL int_f nh5pset_fapl_multi_c ( hid_t_f *prp_id , int_f *mem_map, hid_t_f *memb_fapl, _fcd memb_name, int_f *len, int_f *lenmax, real_f *memb_addr, int_f *flag);
+H5_FCDLL int_f nh5pset_fapl_multi_sc ( hid_t_f *prp_id , int_f *flag);
+H5_FCDLL int_f nh5pset_szip_c ( hid_t_f *prp_id , int_f *options_mask, int_f *pixels_per_block);
+H5_FCDLL int_f nh5pall_filters_avail_c ( hid_t_f *prp_id , int_f *status);
+H5_FCDLL int_f nh5pfill_value_defined_c ( hid_t_f *prp_id , int_f *flag);
+H5_FCDLL int_f nh5pget_attr_phase_change_c (hid_t_f *ocpl_id, int_f *max_compact, int_f *min_dense );
+H5_FCDLL int_f nh5pset_attr_creation_order_c(hid_t_f *ocpl_id, int_f *crt_order_flags );
+H5_FCDLL int_f nh5pset_shared_mesg_nindexes_c(hid_t_f *plist_id, int_f *nindexes );
+H5_FCDLL int_f nh5pset_shared_mesg_index_c(hid_t_f *fcpl_id, int_f *index_num, int_f *mesg_type_flags, int_f *min_mesg_size);
+H5_FCDLL int_f nh5pget_attr_creation_order_c(hid_t_f *ocpl_id, int_f *crt_order_flags);
+H5_FCDLL int_f nh5pset_libver_bounds_c(hid_t_f *fapl_id, int_f *low, int_f *high);
+H5_FCDLL int_f nh5pset_link_creation_order_c(hid_t_f *gcpl_id, int_f *crt_order_flags);
+H5_FCDLL int_f nh5pget_link_phase_change_c(hid_t_f *gcpl_id, int_f *max_compact, int_f *min_dense );
+H5_FCDLL int_f nh5pget_obj_track_times_c(hid_t_f *plist_id, int_f *flag);
+H5_FCDLL int_f nh5pset_obj_track_times_c(hid_t_f *plist_id, int_f *flag);
+H5_FCDLL int_f nh5pset_create_inter_group_c(hid_t_f *lcpl_id, int_f *crt_intermed_group);
+H5_FCDLL int_f nh5pget_create_inter_group_c(hid_t_f *lcpl_id, int_f *crt_intermed_group);
+H5_FCDLL int_f nh5pget_link_creation_order_c(hid_t_f *gcpl_id, int_f *crt_order_flags);
+H5_FCDLL int_f nh5pset_char_encoding_c(hid_t_f *plist_id, int_f *encoding);
+H5_FCDLL int_f nh5pget_char_encoding_c(hid_t_f *plist_id, int_f *encoding);
+H5_FCDLL int_f nh5pset_copy_object_c(hid_t_f *ocp_plist_id, int_f *copy_options);
+H5_FCDLL int_f nh5pget_copy_object_c(hid_t_f *ocp_plist_id, int_f *copy_options);
+H5_FCDLL int_f nh5pget_data_transform_c(hid_t_f *plist_id, _fcd expression, int_f *expression_len, size_t_f *size);
+H5_FCDLL int_f nh5pset_data_transform_c(hid_t_f *plist_id, _fcd expression, int_f *expression_len);
+H5_FCDLL int_f nh5pget_local_heap_size_hint_c(hid_t_f *gcpl_id, size_t_f *size_hint);
+H5_FCDLL int_f nh5pget_est_link_info_c(hid_t_f *gcpl_id, int_f *est_num_entries, int_f *est_name_len);
+H5_FCDLL int_f nh5pset_local_heap_size_hint_c(hid_t_f *gcpl_id, size_t_f *size_hint);
+H5_FCDLL int_f nh5pset_est_link_info_c(hid_t_f *gcpl_id, int_f *est_num_entries, int_f *est_name_len);
+H5_FCDLL int_f nh5pset_link_phase_change_c(hid_t_f *gcpl_id, int_f *max_compact, int_f *min_dense );
+H5_FCDLL int_f nh5pset_fapl_direct_c(hid_t_f *fapl_id, size_t_f *alignment, size_t_f *block_size, size_t_f *cbuf_size );
+H5_FCDLL int_f nh5pget_fapl_direct_c(hid_t_f *fapl_id, size_t_f *alignment, size_t_f *block_size, size_t_f *cbuf_size );
+H5_FCDLL int_f nh5pset_attr_phase_change_c (hid_t_f *ocpl_id, int_f *max_compact, int_f *min_dense );
+H5_FCDLL int_f nh5pset_nbit_c(hid_t_f *plist_id );
+H5_FCDLL int_f nh5pset_scaleoffset_c(hid_t_f *plist_id, int_f *scale_type, int_f *scale_factor );
+H5_FCDLL int_f nh5pset_nlinks_c(hid_t_f *lapl_id, size_t_f *nlinks);
+H5_FCDLL int_f nh5pget_nlinks_c(hid_t_f *lapl_id, size_t_f *nlinks);
+H5_FCDLL int_f nh5pset_chunk_cache_c(hid_t_f *dapl_id, size_t_f *rdcc_nslots, size_t_f *rdcc_nbytes, real_f *rdcc_w0);
+H5_FCDLL int_f nh5pget_chunk_cache_c(hid_t_f *dapl_id, size_t_f *rdcc_nslots, size_t_f *rdcc_nbytes, real_f *rdcc_w0);
+H5_FCDLL int_f nh5pget_mpio_actual_io_mode_c(hid_t_f *dxpl_id, int_f *actual_io_mode);
+/*
+ * Functions frome H5Rf.c
+ */
+#define nh5rcreate_object_c H5_FC_FUNC_(h5rcreate_object_c, H5RCREATE_OBJECT_C)
+#define nh5rcreate_region_c H5_FC_FUNC_(h5rcreate_region_c, H5RCREATE_REGION_C)
+#define nh5rcreate_ptr_c H5_FC_FUNC_(h5rcreate_ptr_c, H5RCREATE_PTR_C)
+#define nh5rdereference_region_c H5_FC_FUNC_(h5rdereference_region_c, H5RDEREFERENCE_REGION_C)
+#define nh5rdereference_object_c H5_FC_FUNC_(h5rdereference_object_c, H5RDEREFERENCE_OBJECT_C)
+#define nh5rdereference_ptr_c H5_FC_FUNC_(h5rdereference_ptr_c, H5RDEREFERENCE_PTR_C)
+#define nh5rget_region_region_c H5_FC_FUNC_(h5rget_region_region_c, H5RGET_REGION_REGION_C)
+#define nh5rget_region_ptr_c H5_FC_FUNC_(h5rget_region_ptr_c, H5RGET_REGION_PTR_C)
+#define nh5rget_object_type_obj_c H5_FC_FUNC_(h5rget_object_type_obj_c, H5RGET_OBJECT_TYPE_OBJ_C)
+#define nh5rget_name_object_c H5_FC_FUNC_(h5rget_name_object_c, H5RGET_NAME_OBJECT_C)
+#define nh5rget_name_region_c H5_FC_FUNC_(h5rget_name_region_c, H5RGET_NAME_REGION_C)
+#define nh5rget_name_ptr_c H5_FC_FUNC_(h5rget_name_ptr_c, H5RGET_NAME_PTR_C)
+#define nh5rget_obj_type_c H5_FC_FUNC_(h5rget_obj_type_c, H5RGET_OBJ_TYPE_C)
+
+
+H5_FCDLL int_f nh5rcreate_object_c (haddr_t_f *ref, hid_t_f *loc_id, _fcd name, int_f *namelen);
+H5_FCDLL int_f nh5rcreate_region_c (int_f *ref, hid_t_f *loc_id, _fcd name, int_f *namelen, hid_t_f *space_id);
+H5_FCDLL int_f nh5rcreate_ptr_c (void *ref, hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *ref_type, hid_t_f *space_id);
+H5_FCDLL int_f nh5rdereference_region_c (hid_t_f *dset_id, int_f *ref, hid_t_f *obj_id);
+H5_FCDLL int_f nh5rdereference_object_c (hid_t_f *dset_id, haddr_t_f *ref, hid_t_f *obj_id);
+H5_FCDLL int_f nh5rdereference_ptr_c (hid_t_f *obj_id, int_f *ref_type, void *ref, hid_t_f *ref_obj_id);
+H5_FCDLL int_f nh5rget_region_region_c (hid_t_f *dset_id, int_f *ref, hid_t_f *space_id);
+H5_FCDLL int_f nh5rget_region_ptr_c(hid_t_f *dset_id, void *ref, hid_t_f *space_id);
+H5_FCDLL int_f nh5rget_object_type_obj_c (hid_t_f *dset_id, haddr_t_f *ref, int_f *obj_type);
+H5_FCDLL int_f nh5rget_name_object_c (hid_t_f *loc_id, haddr_t_f *ref, _fcd name, size_t_f *name_len, size_t_f *size_default);
+H5_FCDLL int_f nh5rget_name_region_c (hid_t_f *loc_id, int_f *ref, _fcd name, size_t_f *name_len, size_t_f *size_default);
+H5_FCDLL int_f nh5rget_name_ptr_c (hid_t_f *loc_id, int_f *ref_type, void *ref, _fcd name, size_t_f *name_len, size_t_f *size_default);
+H5_FCDLL int_f nh5rget_obj_type_c (hid_t_f *loc_id, int_f *ref_type, void *ref, int_f *obj_type);
+/*
+ * Functions from H5If.c
+ */
+#define nh5iget_type_c H5_FC_FUNC_(h5iget_type_c, H5IGET_TYPE_C)
+#define nh5iget_name_c H5_FC_FUNC_(h5iget_name_c, H5IGET_NAME_C)
+#define nh5iinc_ref_c H5_FC_FUNC_(h5iinc_ref_c, H5IINC_REF_C)
+#define nh5idec_ref_c H5_FC_FUNC_(h5idec_ref_c, H5IDEC_REF_C)
+#define nh5iget_ref_c H5_FC_FUNC_(h5iget_ref_c, H5IGET_REF_C)
+#define nh5iget_file_id_c H5_FC_FUNC_(h5iget_file_id_c, H5IGET_FILE_ID_C)
+#define nh5iis_valid_c H5_FC_FUNC_(h5iis_valid_c, H5IIS_VALID_C)
+
+H5_FCDLL int_f nh5iget_type_c(hid_t_f *obj_id, int_f *type);
+H5_FCDLL int_f nh5iget_name_c(hid_t_f *obj_id, _fcd buf, size_t_f *buf_size, size_t_f *name_size);
+H5_FCDLL int_f nh5iinc_ref_c(hid_t_f *obj_id, int_f *ref_count);
+H5_FCDLL int_f nh5idec_ref_c(hid_t_f *obj_id, int_f *ref_count);
+H5_FCDLL int_f nh5iget_ref_c(hid_t_f *obj_id, int_f *ref_count);
+H5_FCDLL int_f nh5iget_file_id_c(hid_t_f *obj_id, hid_t_f *file_id);
+H5_FCDLL int_f nh5iis_valid_c(hid_t_f *obj_id, int_f *c_valid);
+
+/*
+ * Functions from H5Ef.c
+ */
+#define nh5eclear_c H5_FC_FUNC_(h5eclear_c, H5ECLEAR_C)
+#define nh5eprint_c1 H5_FC_FUNC_(h5eprint_c1, H5EPRINT_C1)
+#define nh5eprint_c2 H5_FC_FUNC_(h5eprint_c2, H5EPRINT_C2)
+#define nh5eget_major_c H5_FC_FUNC_(h5eget_major_c, H5EGET_MAJOR_C)
+#define nh5eget_minor_c H5_FC_FUNC_(h5eget_minor_c, H5EGET_MINOR_C)
+#define nh5eset_auto_c H5_FC_FUNC_(h5eset_auto_c, H5ESET_AUTO_C)
+#define nh5eset_auto2_c H5_FC_FUNC_(h5eset_auto2_c, H5ESET_AUTO2_C)
+#define nprocess_buffer H5_FC_FUNC_(process_buffer, PROCESS_BUFFER)
+
+
+H5_FCDLL int_f nh5eclear_c(hid_t_f *estack_id);
+H5_FCDLL int_f nh5eprint_c1(_fcd name, int_f* namelen);
+H5_FCDLL int_f nh5eprint_c2(void);
+H5_FCDLL int_f nh5eget_major_c(int_f* error_no, _fcd name, size_t_f* namelen);
+H5_FCDLL int_f nh5eget_minor_c(int_f* error_no, _fcd name, size_t_f* namelen);
+H5_FCDLL int_f nh5eset_auto_c(int_f* printflag);
+H5_FCDLL int_f nh5eset_auto2_c(int_f* printflag, hid_t_f *estack_id, H5E_auto2_t func, void *client_data);
+H5_FCDLL int_f nprocess_buffer(hid_t_f *estack_id,void **buffer);
+
+/*
+ * Functions from H5f.c
+ */
+#define nh5open_c H5_FC_FUNC_(h5open_c, H5OPEN_C)
+#define nh5close_c H5_FC_FUNC_(h5close_c, H5CLOSE_C)
+#define nh5init_types_c H5_FC_FUNC_(h5init_types_c, H5INIT_TYPES_C)
+#define nh5close_types_c H5_FC_FUNC_(h5close_types_c, H5CLOSE_TYPES_C)
+#define nh5init_flags_c H5_FC_FUNC_(h5init_flags_c, H5INIT_FLAGS_C)
+#define nh5init1_flags_c H5_FC_FUNC_(h5init1_flags_c, H5INIT1_FLAGS_C)
+#define nh5get_libversion_c H5_FC_FUNC_(h5get_libversion_c, H5GET_LIBVERSION_C)
+#define nh5check_version_c H5_FC_FUNC_(h5check_version_c, H5CHECK_VERSION_C)
+#define nh5garbage_collect_c H5_FC_FUNC_(h5garbage_collect_c, H5GARBAGE_COLLECT_C)
+#define nh5dont_atexit_c H5_FC_FUNC_(h5dont_atexit_c, H5DONT_ATEXIT_C)
+
+
+H5_FCDLL int_f nh5open_c(void);
+H5_FCDLL int_f nh5close_c(void);
+H5_FCDLL int_f nh5init_types_c(hid_t_f *types, hid_t_f *floatingtypes, hid_t_f *integertypes);
+H5_FCDLL int_f nh5close_types_c(hid_t_f *types, int_f *lentypes, hid_t_f *floatingtypes, int_f *floatinglen, hid_t_f *integertypes, int_f *integerlen);
+H5_FCDLL int_f nh5init_flags_c(int_f *h5d_flags, size_t_f *h5d_size_flags, int_f *h5e_flags, hid_t_f *h5e_hid_flags, int_f *h5f_flags,
+ int_f *h5fd_flags, hid_t_f *h5fd_hid_flags,
+ int_f *h5g_flags, int_f *h5i_flags, int_f *h5l_flags, int_f *h5o_flags,
+ hid_t_f *h5p_flags, int_f *h5p_flags_int, int_f *h5r_flags, int_f *h5s_flags,
+ hsize_t_f *h5s_hsize_flags, int_f *h5t_flags, int_f *h5z_flags, int_f *h5_generic_flags);
+H5_FCDLL int_f nh5init1_flags_c(int_f *h5lib_flags);
+H5_FCDLL int_f nh5get_libversion_c(int_f *majnum, int_f *minnum, int_f *relnum);
+H5_FCDLL int_f nh5check_version_c(int_f *majnum, int_f *minnum, int_f *relnum);
+H5_FCDLL int_f nh5garbage_collect_c(void);
+H5_FCDLL int_f nh5dont_atexit_c(void);
+
+/*
+ * Functions from H5Zf.c
+ */
+#define nh5zunregister_c H5_FC_FUNC_(h5zunregister_c, H5ZUNREGISTER_C)
+#define nh5zfilter_avail_c H5_FC_FUNC_(h5zfilter_avail_c, H5ZFILTER_AVAIL_C)
+#define nh5zget_filter_info_c H5_FC_FUNC_(h5zget_filter_info_c, H5ZGET_FILTER_INFO_C)
+
+
+H5_FCDLL int_f nh5zunregister_c (int_f *filter);
+H5_FCDLL int_f nh5zfilter_avail_c (int_f *filter, int_f *flag);
+H5_FCDLL int_f nh5zget_filter_info_c (int_f *filter, int_f *flag);
+
+
+/*
+ * Functions from H5Lf.c
+ */
+#define nh5lcopy_c H5_FC_FUNC_(h5lcopy_c, H5LCOPY_C)
+#define nh5lcreate_external_c H5_FC_FUNC_(h5lcreate_external_c, H5LCREATE_EXTERNAL_C)
+#define nh5lcreate_hard_c H5_FC_FUNC_(h5lcreate_hard_c, H5LCREATE_HARD_C)
+#define nh5lcreate_soft_c H5_FC_FUNC_(h5lcreate_soft_c, H5LCREATE_SOFT_C)
+#define nh5ldelete_c H5_FC_FUNC_(h5ldelete_c, H5LDELETE_C)
+#define nh5ldelete_by_idx_c H5_FC_FUNC_(h5ldelete_by_idx_c, H5LDELETE_BY_IDX_C)
+#define nh5lexists_c H5_FC_FUNC_(h5lexists_c, H5LEXISTS_C)
+#define nh5lget_info_c H5_FC_FUNC_(h5lget_info_c, H5LGET_INFO_C)
+#define nh5lget_info_by_idx_c H5_FC_FUNC_(h5lget_info_by_idx_c, H5LGET_INFO_BY_IDX_C)
+#define nh5lis_registered_c H5_FC_FUNC_(h5lis_registered_c, H5LIS_REGISTERED_C)
+#define nh5lmove_c H5_FC_FUNC_(h5lmove_c, H5LMOVE_C)
+#define nh5lget_name_by_idx_c H5_FC_FUNC_(h5lget_name_by_idx_c, H5LGET_NAME_BY_IDX_C)
+#define nh5lget_val_c H5_FC_FUNC_(h5lget_val_c, H5LGET_VAL_C)
+#define nh5literate_c H5_FC_FUNC_(h5literate_c, H5LITERATE_C)
+#define nh5literate_by_name_c H5_FC_FUNC_(h5literate_by_name_c, H5LITERATE_BY_NAME_C)
+
+H5_FCDLL int_f nh5lcopy_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_namelen, hid_t_f *dest_loc_id,
+ _fcd dest_name, size_t_f *dest_namelen,
+ hid_t_f *lcpl_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lcreate_external_c(_fcd file_name, size_t_f *file_namelen, _fcd obj_name, size_t_f *obj_namelen,
+ hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen,
+ hid_t_f *lcpl_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lcreate_hard_c(hid_t_f *obj_loc_id, _fcd obj_name, size_t_f *obj_namelen,
+ hid_t_f *link_loc_id,
+ _fcd link_name, size_t_f *link_namelen,
+ hid_t_f *lcpl_id, hid_t_f *lapl_id );
+H5_FCDLL int_f nh5lcreate_soft_c(_fcd target_path, size_t_f *target_path_len,
+ hid_t_f *link_loc_id,
+ _fcd link_name, size_t_f *link_name_len,
+ hid_t_f *lcpl_id, hid_t_f *lapl_id );
+H5_FCDLL int_f nh5ldelete_c( hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id );
+H5_FCDLL int_f nh5ldelete_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lexists_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, int_f *link_exists);
+H5_FCDLL int_f nh5lget_info_c (hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen,
+ int_f *cset, int_f *corder, int_f *corder_valid, int_f *link_type,
+ haddr_t_f *address, size_t_f *val_size,
+ hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n,
+ int_f *link_type, int_f *corder_valid, int_f *corder, int_f *cset, haddr_t_f *address, size_t_f *val_size, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lis_registered_c(int_f *link_cls_id);
+H5_FCDLL int_f nh5lmove_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_namelen, hid_t_f *dest_loc_id,
+ _fcd dest_name, size_t_f *dest_namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lget_name_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen,
+ int_f *index_field, int_f *order, hsize_t_f *n,
+ size_t_f *size, _fcd name, hid_t_f *lapl_id);
+H5_FCDLL int_f nh5lget_val_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, size_t_f *size,
+ void *linkval_buff, hid_t_f *lapl_id) ;
+
+H5_FCDLL int_f nh5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data );
+H5_FCDLL int_f nh5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data, hid_t_f *lapl_id);
+
+
+#endif /* _H5f90proto_H */
diff --git a/Resources/windows-libs/HDF5/include/H5fortran_types.f90 b/Resources/windows-libs/HDF5/include/H5fortran_types.f90
new file mode 100644
index 0000000000000000000000000000000000000000..ac24534ae6f8f2a53a10263550be2355d9ba8231
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5fortran_types.f90
@@ -0,0 +1,43 @@
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+! Copyright by The HDF Group. *
+! Copyright by the Board of Trustees of the University of Illinois. *
+! All rights reserved. *
+! *
+! This file is part of HDF5. The full HDF5 copyright notice, including *
+! terms governing use, modification, and redistribution, is contained in *
+! the files COPYING and Copyright.html. COPYING can be found at the root *
+! of the source code distribution tree; Copyright.html can be found at the *
+! root level of an installed copy of the electronic HDF5 document set and *
+! is linked from the top-level documents page. It can also be found at *
+! http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+! access to either file, you may request a copy from help@hdfgroup.org. *
+! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+!
+!
+! This file is automatically generated and contains HDF5 Fortran90 type definitions.
+!
+ MODULE H5FORTRAN_TYPES
+ !
+ ! HDF5 integers
+ !
+ INTEGER, PARAMETER :: HADDR_T = 8
+ INTEGER, PARAMETER :: HSIZE_T = 8
+ INTEGER, PARAMETER :: HSSIZE_T = 8
+ INTEGER, PARAMETER :: OFF_T = 4
+ INTEGER, PARAMETER :: SIZE_T = 8
+ INTEGER, PARAMETER :: Fortran_INTEGER = 4
+ INTEGER, PARAMETER :: Fortran_INTEGER_1 = 1
+ INTEGER, PARAMETER :: Fortran_INTEGER_2 = 2
+ INTEGER, PARAMETER :: Fortran_INTEGER_4 = 4
+ INTEGER, PARAMETER :: Fortran_INTEGER_8 = 8
+ INTEGER, PARAMETER :: Fortran_REAL_4 = 4
+ INTEGER, PARAMETER :: Fortran_REAL_8 = 8
+ INTEGER, PARAMETER :: Fortran_REAL_16 = 8
+ INTEGER, PARAMETER :: HID_T = 4
+ INTEGER, PARAMETER :: Fortran_REAL = 4
+ INTEGER, PARAMETER :: Fortran_DOUBLE = 8
+ INTEGER, PARAMETER :: H5R_DSET_REG_REF_BUF_SIZE_F = 12
+
+ INTEGER(SIZE_T), PARAMETER :: OBJECT_NAMELEN_DEFAULT_F = -1
+
+ END MODULE H5FORTRAN_TYPES
diff --git a/Resources/windows-libs/HDF5/include/H5overflow.h b/Resources/windows-libs/HDF5/include/H5overflow.h
new file mode 100644
index 0000000000000000000000000000000000000000..f4064f439639654a7c97934da129e07d09eaf8cb
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5overflow.h
@@ -0,0 +1,1939 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_overflow -- do not edit */
+/* Add new types to H5overflow.txt file */
+
+
+#ifndef _H5overflow_H
+#define _H5overflow_H
+
+
+/* Each type in this file is tested for assignment to the other types,
+ * and range checks are defined for bad assignments at run-time.
+ */
+
+/* Assignment checks for unsigned */
+
+/* src: unsigned, dst: int */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_INT
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_INT
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_INT */
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: int */
+
+/* src: unsigned, dst: uint8_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT8_T
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT8_T
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint8_t */
+
+/* src: unsigned, dst: uint16_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT16_T
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT16_T
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint16_t */
+
+/* src: unsigned, dst: uint32_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT32_T
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT32_T
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint32_t */
+
+/* src: unsigned, dst: uint64_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT64_T
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT64_T
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint64_t */
+
+/* src: unsigned, dst: ptrdiff_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: ptrdiff_t */
+
+/* src: unsigned, dst: size_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_SIZE_T
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_SIZE_T
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: size_t */
+
+/* src: unsigned, dst: ssize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: ssize_t */
+
+/* src: unsigned, dst: haddr_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HADDR_T
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HADDR_T
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: haddr_t */
+
+/* src: unsigned, dst: hsize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: hsize_t */
+
+/* src: unsigned, dst: hssize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: hssize_t */
+
+/* src: unsigned, dst: h5_stat_size_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: h5_stat_size_t */
+
+
+/* Assignment checks for int */
+
+/* src: int, dst: unsigned */
+#if H5_SIZEOF_INT < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: unsigned */
+
+/* src: int, dst: uint8_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT8_T
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT8_T
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint8_t */
+
+/* src: int, dst: uint16_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT16_T
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT16_T
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint16_t */
+
+/* src: int, dst: uint32_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT32_T
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT32_T
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint32_t */
+
+/* src: int, dst: uint64_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT64_T
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT64_T
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint64_t */
+
+/* src: int, dst: ptrdiff_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: ptrdiff_t */
+
+/* src: int, dst: size_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_SIZE_T
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_SIZE_T
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: size_t */
+
+/* src: int, dst: ssize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: ssize_t */
+
+/* src: int, dst: haddr_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HADDR_T
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HADDR_T
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: haddr_t */
+
+/* src: int, dst: hsize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: hsize_t */
+
+/* src: int, dst: hssize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: hssize_t */
+
+/* src: int, dst: h5_stat_size_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint8_t */
+
+/* src: uint8_t, dst: unsigned */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: unsigned */
+
+/* src: uint8_t, dst: int */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_INT
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_INT
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: int */
+
+/* src: uint8_t, dst: uint16_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint16_t */
+
+/* src: uint8_t, dst: uint32_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint32_t */
+
+/* src: uint8_t, dst: uint64_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint64_t */
+
+/* src: uint8_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: ptrdiff_t */
+
+/* src: uint8_t, dst: size_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: size_t */
+
+/* src: uint8_t, dst: ssize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: ssize_t */
+
+/* src: uint8_t, dst: haddr_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: haddr_t */
+
+/* src: uint8_t, dst: hsize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: hsize_t */
+
+/* src: uint8_t, dst: hssize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: hssize_t */
+
+/* src: uint8_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint16_t */
+
+/* src: uint16_t, dst: unsigned */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: unsigned */
+
+/* src: uint16_t, dst: int */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_INT
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_INT
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: int */
+
+/* src: uint16_t, dst: uint8_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint8_t */
+
+/* src: uint16_t, dst: uint32_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint32_t */
+
+/* src: uint16_t, dst: uint64_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint64_t */
+
+/* src: uint16_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: ptrdiff_t */
+
+/* src: uint16_t, dst: size_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: size_t */
+
+/* src: uint16_t, dst: ssize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: ssize_t */
+
+/* src: uint16_t, dst: haddr_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: haddr_t */
+
+/* src: uint16_t, dst: hsize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: hsize_t */
+
+/* src: uint16_t, dst: hssize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: hssize_t */
+
+/* src: uint16_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint32_t */
+
+/* src: uint32_t, dst: unsigned */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: unsigned */
+
+/* src: uint32_t, dst: int */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_INT
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_INT
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: int */
+
+/* src: uint32_t, dst: uint8_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint8_t */
+
+/* src: uint32_t, dst: uint16_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint16_t */
+
+/* src: uint32_t, dst: uint64_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint64_t */
+
+/* src: uint32_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: ptrdiff_t */
+
+/* src: uint32_t, dst: size_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: size_t */
+
+/* src: uint32_t, dst: ssize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: ssize_t */
+
+/* src: uint32_t, dst: haddr_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: haddr_t */
+
+/* src: uint32_t, dst: hsize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: hsize_t */
+
+/* src: uint32_t, dst: hssize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: hssize_t */
+
+/* src: uint32_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint64_t */
+
+/* src: uint64_t, dst: unsigned */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: unsigned */
+
+/* src: uint64_t, dst: int */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_INT
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_INT
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: int */
+
+/* src: uint64_t, dst: uint8_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint8_t */
+
+/* src: uint64_t, dst: uint16_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint16_t */
+
+/* src: uint64_t, dst: uint32_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint32_t */
+
+/* src: uint64_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: ptrdiff_t */
+
+/* src: uint64_t, dst: size_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: size_t */
+
+/* src: uint64_t, dst: ssize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: ssize_t */
+
+/* src: uint64_t, dst: haddr_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: haddr_t */
+
+/* src: uint64_t, dst: hsize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: hsize_t */
+
+/* src: uint64_t, dst: hssize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: hssize_t */
+
+/* src: uint64_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for ptrdiff_t */
+
+/* src: ptrdiff_t, dst: unsigned */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: unsigned */
+
+/* src: ptrdiff_t, dst: int */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_INT
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_INT
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_INT */
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: int */
+
+/* src: ptrdiff_t, dst: uint8_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint8_t */
+
+/* src: ptrdiff_t, dst: uint16_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint16_t */
+
+/* src: ptrdiff_t, dst: uint32_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint32_t */
+
+/* src: ptrdiff_t, dst: uint64_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint64_t */
+
+/* src: ptrdiff_t, dst: size_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: size_t */
+
+/* src: ptrdiff_t, dst: ssize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: ssize_t */
+
+/* src: ptrdiff_t, dst: haddr_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: haddr_t */
+
+/* src: ptrdiff_t, dst: hsize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: hsize_t */
+
+/* src: ptrdiff_t, dst: hssize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: hssize_t */
+
+/* src: ptrdiff_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for size_t */
+
+/* src: size_t, dst: unsigned */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: unsigned */
+
+/* src: size_t, dst: int */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: int */
+
+/* src: size_t, dst: uint8_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint8_t */
+
+/* src: size_t, dst: uint16_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint16_t */
+
+/* src: size_t, dst: uint32_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint32_t */
+
+/* src: size_t, dst: uint64_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint64_t */
+
+/* src: size_t, dst: ptrdiff_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: ptrdiff_t */
+
+/* src: size_t, dst: ssize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: ssize_t */
+
+/* src: size_t, dst: haddr_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: haddr_t */
+
+/* src: size_t, dst: hsize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: hsize_t */
+
+/* src: size_t, dst: hssize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: hssize_t */
+
+/* src: size_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for ssize_t */
+
+/* src: ssize_t, dst: unsigned */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: unsigned */
+
+/* src: ssize_t, dst: int */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: int */
+
+/* src: ssize_t, dst: uint8_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint8_t */
+
+/* src: ssize_t, dst: uint16_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint16_t */
+
+/* src: ssize_t, dst: uint32_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint32_t */
+
+/* src: ssize_t, dst: uint64_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint64_t */
+
+/* src: ssize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: ptrdiff_t */
+
+/* src: ssize_t, dst: size_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: size_t */
+
+/* src: ssize_t, dst: haddr_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: haddr_t */
+
+/* src: ssize_t, dst: hsize_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: hsize_t */
+
+/* src: ssize_t, dst: hssize_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: hssize_t */
+
+/* src: ssize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for haddr_t */
+
+/* src: haddr_t, dst: unsigned */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: unsigned */
+
+/* src: haddr_t, dst: int */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_INT
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_INT
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_INT */
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: int */
+
+/* src: haddr_t, dst: uint8_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint8_t */
+
+/* src: haddr_t, dst: uint16_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint16_t */
+
+/* src: haddr_t, dst: uint32_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint32_t */
+
+/* src: haddr_t, dst: uint64_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint64_t */
+
+/* src: haddr_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: ptrdiff_t */
+
+/* src: haddr_t, dst: size_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: size_t */
+
+/* src: haddr_t, dst: ssize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: ssize_t */
+
+/* src: haddr_t, dst: hsize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: hsize_t */
+
+/* src: haddr_t, dst: hssize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: hssize_t */
+
+/* src: haddr_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for hsize_t */
+
+/* src: hsize_t, dst: unsigned */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: unsigned */
+
+/* src: hsize_t, dst: int */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: int */
+
+/* src: hsize_t, dst: uint8_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint8_t */
+
+/* src: hsize_t, dst: uint16_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint16_t */
+
+/* src: hsize_t, dst: uint32_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint32_t */
+
+/* src: hsize_t, dst: uint64_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint64_t */
+
+/* src: hsize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: ptrdiff_t */
+
+/* src: hsize_t, dst: size_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: size_t */
+
+/* src: hsize_t, dst: ssize_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: ssize_t */
+
+/* src: hsize_t, dst: haddr_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: haddr_t */
+
+/* src: hsize_t, dst: hssize_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: hssize_t */
+
+/* src: hsize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for hssize_t */
+
+/* src: hssize_t, dst: unsigned */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: unsigned */
+
+/* src: hssize_t, dst: int */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: int */
+
+/* src: hssize_t, dst: uint8_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint8_t */
+
+/* src: hssize_t, dst: uint16_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint16_t */
+
+/* src: hssize_t, dst: uint32_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint32_t */
+
+/* src: hssize_t, dst: uint64_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint64_t */
+
+/* src: hssize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: ptrdiff_t */
+
+/* src: hssize_t, dst: size_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: size_t */
+
+/* src: hssize_t, dst: ssize_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: ssize_t */
+
+/* src: hssize_t, dst: haddr_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: haddr_t */
+
+/* src: hssize_t, dst: hsize_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: hsize_t */
+
+/* src: hssize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for h5_stat_size_t */
+
+/* src: h5_stat_size_t, dst: unsigned */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: unsigned */
+
+/* src: h5_stat_size_t, dst: int */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: int */
+
+/* src: h5_stat_size_t, dst: uint8_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint8_t */
+
+/* src: h5_stat_size_t, dst: uint16_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint16_t */
+
+/* src: h5_stat_size_t, dst: uint32_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint32_t */
+
+/* src: h5_stat_size_t, dst: uint64_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint64_t */
+
+/* src: h5_stat_size_t, dst: ptrdiff_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: ptrdiff_t */
+
+/* src: h5_stat_size_t, dst: size_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: size_t */
+
+/* src: h5_stat_size_t, dst: ssize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: ssize_t */
+
+/* src: h5_stat_size_t, dst: haddr_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: haddr_t */
+
+/* src: h5_stat_size_t, dst: hsize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: hsize_t */
+
+/* src: h5_stat_size_t, dst: hssize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: hssize_t */
+
+#endif /* H5overflow_H */
+
diff --git a/Resources/windows-libs/HDF5/include/H5pubconf.h b/Resources/windows-libs/HDF5/include/H5pubconf.h
new file mode 100644
index 0000000000000000000000000000000000000000..fd3704a2de0e71de3c98bde5c5e0aad8961dee20
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5pubconf.h
@@ -0,0 +1,801 @@
+/* H5pubconf.h Generated By CMake during the configuration */
+
+#ifndef H5_CONFIG_H_
+#define H5_CONFIG_H_
+
+/* Define if the Windows virtual file driver should be compiled */
+#define H5_HAVE_WINDOWS 1
+
+/* Define if using MinGW */
+/* #undef H5_HAVE_MINGW */
+
+/* Define if on the Windows platform and default WIN32 API */
+#define H5_HAVE_WIN32_API 1
+
+/* Define if using a Windows compiler (i.e. Visual Studio) */
+#define H5_HAVE_VISUAL_STUDIO 1
+
+/* Defined if HDF5 was built with CMake AND build as a shared library */
+#define H5_BUILT_AS_DYNAMIC_LIB 1
+
+/* Defined if HDF5 was built with CMake AND build as a static library */
+/* #undef H5_BUILT_AS_STATIC_LIB */
+
+/* Defined if HDF5 CPP was built with CMake AND build as a shared library */
+/* #undef H5_CPP_BUILT_AS_DYNAMIC_LIB */
+
+/* Defined if HDF5 CPP was built with CMake AND build as a static library */
+/* #undef H5_CPP_BUILT_AS_STATIC_LIB */
+
+/* Defined if HDF5 HL was built with CMake AND build as a shared library */
+/* #undef H5_HL_BUILT_AS_DYNAMIC_LIB */
+
+/* Defined if HDF5 HL was built with CMake AND build as a static library */
+/* #undef H5_HL_BUILT_AS_STATIC_LIB */
+
+/* Define if building universal (internal helper macro) */
+/* #undef H5_AC_APPLE_UNIVERSAL_BUILD */
+
+/* Define if your system generates wrong code for log2 routine. */
+/* #undef H5_BAD_LOG2_CODE_GENERATED */
+
+/* Define if the memory buffers being written to disk should be cleared before
+ writing. */
+#define H5_CLEAR_MEMORY 1
+
+/* Define if your system can handle converting denormalized floating-point
+ values. */
+#define H5_CONVERT_DENORMAL_FLOAT 1
+
+/* Define if C++ compiler recognizes offsetof */
+/* #undef H5_CXX_HAVE_OFFSETOF */
+
+/* Define the default plugins path to compile */
+#define H5_DEFAULT_PLUGINDIR "%ALLUSERSPROFILE%/hdf5/lib/plugin"
+
+/* Define the default virtual file driver to compile */
+#define H5_DEFAULT_VFD H5FD_SEC2
+
+/* Define if `dev_t' is a scalar */
+/* #undef H5_DEV_T_IS_SCALAR */
+
+/* Define to dummy `main' function (if any) required to link to the Fortran
+ libraries. */
+/* #undef H5_FC_DUMMY_MAIN */
+
+/* Define if F77 and FC dummy `main' functions are identical. */
+/* #undef H5_FC_DUMMY_MAIN_EQ_F77 */
+
+/* Define to a macro mangling the given C identifier (in lower and upper
+ case), which must not contain underscores, for linking with Fortran. */
+#define H5_FC_FUNC(name,NAME) NAME
+
+/* As FC_FUNC, but for C identifiers containing underscores. */
+#define H5_FC_FUNC_(name,NAME) NAME
+
+/* Define if your system can handle overflow converting floating-point to
+ integer values. */
+#define H5_FP_TO_INTEGER_OVERFLOW_WORKS 1
+
+/* Define if your system roundup accurately converting floating-point to
+ unsigned long long values. */
+#define H5_FP_TO_ULLONG_ACCURATE 1
+
+/* Define if your system has right maximum convert floating-point to unsigned
+ long long values. */
+/* #undef H5_FP_TO_ULLONG_RIGHT_MAXIMUM */
+
+/* Define if gettimeofday() populates the tz pointer passed in */
+#define H5_GETTIMEOFDAY_GIVES_TZ 1
+
+/* Define to 1 if you have the `alarm' function. */
+/* #undef H5_HAVE_ALARM */
+
+/* Define if the __attribute__(()) extension is present */
+/* #undef H5_HAVE_ATTRIBUTE */
+
+/* Define to 1 if you have the `BSDgettimeofday' function. */
+/* #undef H5_HAVE_BSDGETTIMEOFDAY */
+
+/* Define if the compiler understands C99 designated initialization of structs
+ and unions */
+/* #undef H5_HAVE_C99_DESIGNATED_INITIALIZER */
+
+/* Define if the compiler understands the __func__ keyword */
+/* #undef H5_HAVE_C99_FUNC */
+
+/* Define to 1 if you have the `clock_gettime' function. */
+/* #undef H5_HAVE_CLOCK_GETTIME */
+
+/* Define if the function stack tracing code is to be compiled in */
+/* #undef H5_HAVE_CODESTACK */
+
+/* Define if Darwin or Mac OS X */
+/* #undef H5_HAVE_DARWIN */
+
+/* Define to 1 if you have the declaration of `tzname', and to 0 if you don't.
+ */
+#define H5_HAVE_DECL_TZNAME 1
+
+/* Define to 1 if you have the `difftime' function. */
+#define H5_HAVE_DIFFTIME 1
+
+/* Define if the direct I/O virtual file driver should be compiled */
+/* #undef H5_HAVE_DIRECT */
+
+/* Define to 1 if you have the <dirent.h> header file. */
+/* #undef H5_HAVE_DIRENT_H */
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+/* #undef H5_HAVE_DLFCN_H */
+
+/* Define to 1 if you have the <dmalloc.h> header file. */
+/* #undef H5_HAVE_DMALLOC_H */
+
+/* Define if library information should be embedded in the executables */
+#define H5_HAVE_EMBEDDED_LIBINFO 1
+
+/* Define to 1 if you have the <features.h> header file. */
+/* #undef H5_HAVE_FEATURES_H */
+
+/* Define if support for deflate (zlib) filter is enabled */
+#define H5_HAVE_FILTER_DEFLATE 1
+
+/* Define if support for Fletcher32 checksum is enabled */
+#define H5_HAVE_FILTER_FLETCHER32 1
+
+/* Define if support for nbit filter is enabled */
+#define H5_HAVE_FILTER_NBIT 1
+
+/* Define if support for scaleoffset filter is enabled */
+#define H5_HAVE_FILTER_SCALEOFFSET 1
+
+/* Define if support for shuffle filter is enabled */
+#define H5_HAVE_FILTER_SHUFFLE 1
+
+/* Define if support for szip filter is enabled */
+#define H5_HAVE_FILTER_SZIP 1
+
+/* Define to 1 if you have the `fork' function. */
+/* #undef H5_HAVE_FORK */
+
+/* Define to 1 if you have the `frexpf' function. */
+/* #undef H5_HAVE_FREXPF */
+
+/* Define to 1 if you have the `frexpl' function. */
+/* #undef H5_HAVE_FREXPL */
+
+/* Define to 1 if you have the `fseeko' function. */
+/* #undef H5_HAVE_FSEEKO */
+
+/* Define to 1 if you have the `fseeko64' function. */
+/* #undef H5_HAVE_FSEEKO64 */
+
+/* Define to 1 if you have the `fstat64' function. */
+/* #undef H5_HAVE_FSTAT64 */
+
+/* Define to 1 if you have the `ftello' function. */
+/* #undef H5_HAVE_FTELLO */
+
+/* Define to 1 if you have the `ftello64' function. */
+/* #undef H5_HAVE_FTELLO64 */
+
+/* Define to 1 if you have the `ftruncate64' function. */
+/* #undef H5_HAVE_FTRUNCATE64 */
+
+/* Define if the compiler understands the __FUNCTION__ keyword */
+#define H5_HAVE_FUNCTION 1
+
+/* Define to 1 if you have the `GetConsoleScreenBufferInfo' function. */
+#define H5_HAVE_GETCONSOLESCREENBUFFERINFO 1
+
+/* Define to 1 if you have the `gethostname' function. */
+#define H5_HAVE_GETHOSTNAME 1
+
+/* Define to 1 if you have the `getpwuid' function. */
+/* #undef H5_HAVE_GETPWUID */
+
+/* Define to 1 if you have the `getrusage' function. */
+/* #undef H5_HAVE_GETRUSAGE */
+
+/* Define to 1 if you have the `gettextinfo' function. */
+/* #undef H5_HAVE_GETTEXTINFO */
+
+/* Define to 1 if you have the `gettimeofday' function. */
+#define H5_HAVE_GETTIMEOFDAY 1
+
+/* Define to 1 if you have the `gettimeofday' function declared in time.h . */
+/* #undef H5_HAVE_TIME_GETTIMEOFDAY */
+
+/* Define to 1 if you have the `gettimeofday' function declared in sys/time.h . */
+/* #undef H5_HAVE_SYS_TIME_GETTIMEOFDAY */
+
+/* Define to 1 if you have the `get_fpc_csr' function. */
+/* #undef H5_HAVE_GET_FPC_CSR */
+
+/* Define if library will contain instrumentation to detect correct
+ optimization operation */
+/* #undef H5_HAVE_INSTRUMENTED_LIBRARY */
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+/* #undef H5_HAVE_INTTYPES_H */
+
+/* Define to 1 if you have the `ioctl' function. */
+/* #undef H5_HAVE_IOCTL */
+
+/* Define to 1 if you have the <io.h> header file. */
+#define H5_HAVE_IO_H 1
+
+/* Define to 1 if you have the `dl' library (-ldl). */
+/* #undef H5_HAVE_LIBDL */
+
+/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
+/* #undef H5_HAVE_LIBDMALLOC */
+
+/* Define to 1 if you have the `lmpe' library (-llmpe). */
+/* #undef H5_HAVE_LIBLMPE */
+
+/* Define to 1 if you have the `m' library (-lm). */
+#define H5_HAVE_LIBM 1
+
+/* Define to 1 if you have the `mpe' library (-lmpe). */
+/* #undef H5_HAVE_LIBMPE */
+
+/* Define to 1 if you have the `mpi' library (-lmpi). */
+/* #undef H5_HAVE_LIBMPI */
+
+/* Define to 1 if you have the `mpich' library (-lmpich). */
+/* #undef H5_HAVE_LIBMPICH */
+
+/* Define to 1 if you have the `mpio' library (-lmpio). */
+/* #undef H5_HAVE_LIBMPIO */
+
+/* Define to 1 if you have the `nsl' library (-lnsl). */
+/* #undef H5_HAVE_LIBNSL */
+
+/* Define to 1 if you have the `pthread' library (-lpthread). */
+/* #undef H5_HAVE_LIBPTHREAD */
+
+/* Define to 1 if you have the `socket' library (-lsocket). */
+/* #undef H5_HAVE_LIBSOCKET */
+
+/* Define to 1 if you have the `sz' library (-lsz). */
+#define H5_HAVE_LIBSZ 1
+
+/* Define to 1 if you have the `ws2_32' library (-lws2_32). */
+#define H5_HAVE_LIBWS2_32 1
+
+/* Define to 1 if you have the `z' library (-lz). */
+#define H5_HAVE_LIBZ 1
+
+/* Define to 1 if you have the `longjmp' function. */
+#define H5_HAVE_LONGJMP 1
+
+/* Define to 1 if you have the `lseek64' function. */
+/* #undef H5_HAVE_LSEEK64 */
+
+/* Define to 1 if you have the `lstat' function. */
+/* #undef H5_HAVE_LSTAT */
+
+/* Define to 1 if you have the <mach/mach_time.h> header file. */
+/* #undef H5_HAVE_MACH_MACH_TIME_H */
+
+/* Define to 1 if you have the <memory.h> header file. */
+#define H5_HAVE_MEMORY_H 1
+
+/* Define if we have MPE support */
+/* #undef H5_HAVE_MPE */
+
+/* Define to 1 if you have the <mpe.h> header file. */
+/* #undef H5_HAVE_MPE_H */
+
+/* Define if MPI_File_get_size works correctly */
+/* #undef H5_HAVE_MPI_GET_SIZE */
+
+/* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */
+/* #undef H5_HAVE_MPI_MULTI_LANG_Comm */
+
+/* Define if `MPI_Info_c2f' and `MPI_Info_f2c' exists */
+/* #undef H5_HAVE_MPI_MULTI_LANG_Info */
+
+/* Define if we have parallel support */
+/* #undef H5_HAVE_PARALLEL */
+
+/* Define to 1 if you have the <pthread.h> header file. */
+/* #undef H5_HAVE_PTHREAD_H */
+
+/* Define to 1 if you have the 'InitOnceExecuteOnce' function. */
+/* #undef H5_HAVE_WIN_THREADS */
+
+/* Define to 1 if you have the `random' function. */
+/* #undef H5_HAVE_RANDOM */
+
+/* Define to 1 if you have the `rand_r' function. */
+/* #undef H5_HAVE_RAND_R */
+
+/* Define to 1 if you have the `sigsetjmp' function. */
+#define H5_HAVE_SETJMP 1
+
+/* Define to 1 if you have the <setjmp.h> header file. */
+#define H5_HAVE_SETJMP_H 1
+
+/* Define to 1 if you have the `setsysinfo' function. */
+/* #undef H5_HAVE_SETSYSINFO */
+
+/* Define to 1 if you have the `sigaction' function. */
+/* #undef H5_HAVE_SIGACTION */
+
+/* Define to 1 if you have the `siglongjmp' function. */
+/* #undef H5_HAVE_SIGLONGJMP */
+
+/* Define to 1 if you have the `signal' function. */
+#define H5_HAVE_SIGNAL 1
+
+/* Define to 1 if you have the `sigprocmask' function. */
+/* #undef H5_HAVE_SIGPROCMASK */
+
+/* Define to 1 if you have the `sigsetjmp' function. */
+/* #undef H5_HAVE_SIGSETJMP */
+
+/* Define to 1 if you have the `snprintf' function. */
+/* #undef H5_HAVE_SNPRINTF */
+
+/* Define to 1 if you have the `srandom' function. */
+/* #undef H5_HAVE_SRANDOM */
+
+/* Define to 1 if you have the `stat64' function. */
+/* #undef H5_HAVE_STAT64 */
+
+/* Define if `struct stat' has the `st_blocks' field */
+/* #undef H5_HAVE_STAT_ST_BLOCKS */
+
+/* Define to 1 if you have the <stddef.h> header file. */
+#define H5_HAVE_STDDEF_H 1
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#define H5_HAVE_STDINT_H 1
+
+/* Define to 1 if you have the <stdint.h> header file for Cplusplus. */
+#define H5_HAVE_STDINT_H_CXX 1
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#define H5_HAVE_STDLIB_H 1
+
+/* Define to 1 if you have the `strdup' function. */
+#define H5_HAVE_STRDUP 1
+
+/* Define to 1 if you have the <strings.h> header file. */
+/* #undef H5_HAVE_STRINGS_H */
+
+/* Define to 1 if you have the <string.h> header file. */
+#define H5_HAVE_STRING_H 1
+
+/* Define if `struct text_info' is defined */
+/* #undef H5_HAVE_STRUCT_TEXT_INFO */
+
+/* Define if `struct timezone' is defined */
+/* #undef H5_HAVE_STRUCT_TIMEZONE */
+
+/* Define to 1 if `tm_zone' is a member of `struct tm'. */
+/* #undef H5_HAVE_STRUCT_TM_TM_ZONE */
+
+/* Define if `struct videoconfig' is defined */
+/* #undef H5_HAVE_STRUCT_VIDEOCONFIG */
+
+/* Define to 1 if you have the `symlink' function. */
+/* #undef H5_HAVE_SYMLINK */
+
+/* Define to 1 if you have the `system' function. */
+#define H5_HAVE_SYSTEM 1
+
+/* Define to 1 if you have the <sys/fpu.h> header file. */
+/* #undef H5_HAVE_SYS_FPU_H */
+
+/* Define to 1 if you have the <sys/ioctl.h> header file. */
+/* #undef H5_HAVE_SYS_IOCTL_H */
+
+/* Define to 1 if you have the <sys/proc.h> header file. */
+/* #undef H5_HAVE_SYS_PROC_H */
+
+/* Define to 1 if you have the <sys/resource.h> header file. */
+/* #undef H5_HAVE_SYS_RESOURCE_H */
+
+/* Define to 1 if you have the <sys/socket.h> header file. */
+/* #undef H5_HAVE_SYS_SOCKET_H */
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#define H5_HAVE_SYS_STAT_H 1
+
+/* Define to 1 if you have the <sys/sysinfo.h> header file. */
+/* #undef H5_HAVE_SYS_SYSINFO_H */
+
+/* Define to 1 if you have the <sys/timeb.h> header file. */
+#define H5_HAVE_SYS_TIMEB_H 1
+
+/* Define to 1 if you have the <time.h> header file. */
+#define H5_HAVE_TIME_H 1
+
+/* Define to 1 if you have the <sys/time.h> header file. */
+/* #undef H5_HAVE_SYS_TIME_H */
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#define H5_HAVE_SYS_TYPES_H 1
+
+/* Define to 1 if you have the <szlib.h> header file. */
+#define H5_HAVE_SZLIB_H 1
+
+/* Define if we have thread safe support */
+/* #undef H5_HAVE_THREADSAFE */
+
+/* Define if `timezone' is a global variable */
+#define H5_HAVE_TIMEZONE 1
+
+/* Define if the ioctl TIOCGETD is defined */
+/* #undef H5_HAVE_TIOCGETD */
+
+/* Define if the ioctl TIOGWINSZ is defined */
+/* #undef H5_HAVE_TIOCGWINSZ */
+
+/* Define to 1 if you have the `tmpfile' function. */
+#define H5_HAVE_TMPFILE 1
+
+/* Define if `tm_gmtoff' is a member of `struct tm' */
+/* #undef H5_HAVE_TM_GMTOFF */
+
+/* Define to 1 if your `struct tm' has `tm_zone'. Deprecated, use
+ `HAVE_STRUCT_TM_TM_ZONE' instead. */
+/* #undef H5_HAVE_TM_ZONE */
+
+/* Define to 1 if you don't have `tm_zone' but do have the external array
+ `tzname'. */
+/* #undef H5_HAVE_TZNAME */
+
+/* Define to 1 if you have the <unistd.h> header file. */
+/* #undef H5_HAVE_UNISTD_H */
+
+/* Define to 1 if you have the `vasprintf' function. */
+/* #undef H5_HAVE_VASPRINTF */
+
+/* Define to 1 if you have the `vsnprintf' function. */
+#define H5_HAVE_VSNPRINTF 1
+
+/* Define to 1 if you have the `waitpid' function. */
+/* #undef H5_HAVE_WAITPID */
+
+/* Define if your system has window style path name. */
+#define H5_HAVE_WINDOW_PATH 1
+
+/* Define to 1 if you have the <winsock.h> header file. */
+#define H5_HAVE_WINSOCK2_H 1
+
+/* Define to 1 if you have the <zlib.h> header file. */
+#define H5_HAVE_ZLIB_H 1
+
+/* Define to 1 if you have the `_getvideoconfig' function. */
+/* #undef H5_HAVE__GETVIDEOCONFIG */
+
+/* Define to 1 if you have the `_scrsize' function. */
+/* #undef H5_HAVE__SCRSIZE */
+
+/* Define if `__tm_gmtoff' is a member of `struct tm' */
+/* #undef H5_HAVE___TM_GMTOFF */
+
+/* Define if your system can't handle converting floating-point values to long
+ long. */
+/* #undef H5_HW_FP_TO_LLONG_NOT_WORKS */
+
+/* Define if HDF5's high-level library headers should be included in hdf5.h */
+#define H5_INCLUDE_HL 1
+
+/* Define if your system can accurately convert from integers to long double
+ values. */
+#define H5_INTEGER_TO_LDOUBLE_ACCURATE 1
+
+/* Define if your system can convert long double to integers accurately. */
+#define H5_LDOUBLE_TO_INTEGER_ACCURATE 1
+
+/* Define if your system can convert from long double to integer values. */
+/* #undef H5_LDOUBLE_TO_INTEGER_WORKS */
+
+/* Define if your system can convert long double to (unsigned) long long
+ values correctly. */
+#define H5_LDOUBLE_TO_LLONG_ACCURATE 1
+
+/* Define if your system converts long double to (unsigned) long values with
+ special algorithm. */
+/* #undef H5_LDOUBLE_TO_LONG_SPECIAL */
+
+/* Define if your system can convert long double to unsigned int values
+ correctly. */
+#define H5_LDOUBLE_TO_UINT_ACCURATE 1
+
+/* Define if your system can compile long long to floating-point casts. */
+#define H5_LLONG_TO_FP_CAST_WORKS 1
+
+/* Define if your system can convert (unsigned) long long to long double
+ values correctly. */
+#define H5_LLONG_TO_LDOUBLE_CORRECT 1
+
+/* Define if your system can convert (unsigned) long to long double values
+ with special algorithm. */
+/* #undef H5_LONG_TO_LDOUBLE_SPECIAL */
+
+/* Define to the sub-directory in which libtool stores uninstalled libraries.
+ */
+/* #undef H5_LT_OBJDIR */
+
+/* Define if the metadata trace file code is to be compiled in */
+/* #undef H5_METADATA_TRACE_FILE */
+
+/* Define if your system's `MPI_File_set_size' function works for files over
+ 2GB. */
+/* #undef H5_MPI_FILE_SET_SIZE_BIG */
+
+/* Define if we can violate pointer alignment restrictions */
+#define H5_NO_ALIGNMENT_RESTRICTIONS 1
+
+/* Define if deprecated public API symbols are disabled */
+/* #undef H5_NO_DEPRECATED_SYMBOLS */
+
+/* Define if shared writing must be disabled (CodeWarrior only) */
+/* #undef H5_NO_SHARED_WRITING */
+
+/* Name of package */
+#define H5_PACKAGE "hdf5"
+
+/* Define to the address where bug reports for this package should be sent. */
+#define H5_PACKAGE_BUGREPORT "help@hdfgroup.org"
+
+/* Define to the full name of this package. */
+#define H5_PACKAGE_NAME "HDF5"
+
+/* Define to the full name and version of this package. */
+#define H5_PACKAGE_STRING "HDF5 1.8.13"
+
+/* Define to the one symbol short name of this package. */
+#define H5_PACKAGE_TARNAME "hdf5"
+
+/* Define to the home page for this package. */
+#define H5_PACKAGE_URL "http://www.hdfgroup.org"
+
+/* Define to the version of this package. */
+#define H5_PACKAGE_VERSION "1.8.13"
+
+/* Width for printf() for type `long long' or `__int64', use `ll' */
+#define H5_PRINTF_LL_WIDTH "ll"
+
+/* The size of `char', as computed by sizeof. */
+#define H5_SIZEOF_CHAR 1
+
+/* The size of `double', as computed by sizeof. */
+#define H5_SIZEOF_DOUBLE 8
+
+/* The size of `float', as computed by sizeof. */
+#define H5_SIZEOF_FLOAT 4
+
+/* The size of `int', as computed by sizeof. */
+#define H5_SIZEOF_INT 4
+
+/* The size of `int16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT16_T 2
+
+/* The size of `int32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT32_T 4
+
+/* The size of `int64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT64_T 8
+
+/* The size of `int8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT8_T 1
+
+/* The size of `int_fast16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST16_T 4
+
+/* The size of `int_fast32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST32_T 4
+
+/* The size of `int_fast64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST64_T 8
+
+/* The size of `int_fast8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST8_T 1
+
+/* The size of `int_least16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST16_T 2
+
+/* The size of `int_least32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST32_T 4
+
+/* The size of `int_least64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST64_T 8
+
+/* The size of `int_least8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST8_T 1
+
+#if !defined(__APPLE__)
+/* The size of `size_t', as computed by sizeof. */
+#define H5_SIZEOF_SIZE_T 8
+
+/* The size of `ssize_t', as computed by sizeof. */
+/* #undef H5_SIZEOF_SSIZE_T */
+
+/* The size of `long', as computed by sizeof. */
+#define H5_SIZEOF_LONG 4
+
+#else
+ # if defined(__LP64__) && __LP64__
+ #define H5_SIZEOF_LONG 8
+ #define H5_SIZEOF_SIZE_T 8
+ #define H5_SIZEOF_SSIZE_T 8
+ # else
+ #define H5_SIZEOF_LONG 4
+ #define H5_SIZEOF_SIZE_T 4
+ #define H5_SIZEOF_SSIZE_T 4
+ # endif
+
+#endif
+
+/* The size of `long double', as computed by sizeof. */
+#define H5_SIZEOF_LONG_DOUBLE 8
+
+/* Define size of long long and/or __int64 bit integer type only if the type
+ exists. */
+#if !defined(__APPLE__)
+ #define H5_SIZEOF_LONG_LONG 8
+#else
+ #define H5_SIZEOF_LONG_LONG 8
+#endif
+
+/* The size of `off64_t', as computed by sizeof. */
+/* #undef H5_SIZEOF_OFF64_T */
+
+/* The size of `off_t', as computed by sizeof. */
+#define H5_SIZEOF_OFF_T 4
+
+/* The size of `ptrdiff_t', as computed by sizeof. */
+/* #undef H5_SIZEOF_PTRDIFF_T */
+
+/* The size of `short', as computed by sizeof. */
+#define H5_SIZEOF_SHORT 2
+
+/* The size of `uint16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT16_T 2
+
+/* The size of `uint32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT32_T 4
+
+/* The size of `uint64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT64_T 8
+
+/* The size of `uint8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT8_T 1
+
+/* The size of `uint_fast16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST16_T 4
+
+/* The size of `uint_fast32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST32_T 4
+
+/* The size of `uint_fast64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST64_T 8
+
+/* The size of `uint_fast8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST8_T 1
+
+/* The size of `uint_least16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST16_T 2
+
+/* The size of `uint_least32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST32_T 4
+
+/* The size of `uint_least64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST64_T 8
+
+/* The size of `uint_least8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST8_T 1
+
+/* The size of `unsigned', as computed by sizeof. */
+#define H5_SIZEOF_UNSIGNED 4
+
+/* The size of `__int64', as computed by sizeof. */
+#define H5_SIZEOF___INT64 8
+
+/* Define to 1 if you have the ANSI C header files. */
+#define H5_STDC_HEADERS 1
+
+/* Define if strict file format checks are enabled */
+/* #undef H5_STRICT_FORMAT_CHECKS */
+
+/* Define if your system supports pthread_attr_setscope(&attribute,
+ PTHREAD_SCOPE_SYSTEM) call. */
+/* #undef H5_SYSTEM_SCOPE_THREADS */
+
+/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
+/* #undef H5_TIME_WITH_SYS_TIME */
+
+/* Define to 1 if your <sys/time.h> declares `struct tm'. */
+/* #undef H5_TM_IN_SYS_TIME */
+
+/* Define if your system can compile unsigned long long to floating-point
+ casts. */
+#define H5_ULLONG_TO_FP_CAST_WORKS 1
+
+/* Define if your system can convert unsigned long long to long double with
+ correct precision. */
+/* #undef H5_ULLONG_TO_LDOUBLE_PRECISION */
+
+/* Define if your system accurately converting unsigned long to float values.
+ */
+#define H5_ULONG_TO_FLOAT_ACCURATE 1
+
+/* Define if your system can accurately convert unsigned (long) long values to
+ floating-point values. */
+#define H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
+
+/* Define using v1.6 public API symbols by default */
+/* #undef H5_USE_16_API_DEFAULT */
+
+/* Define if a memory checking tool will be used on the library, to cause
+ library to be very picky about memory operations and also disable the
+ internal free list manager code. */
+/* #undef H5_USING_MEMCHECKER */
+
+/* Version number of package */
+#define H5_VERSION "1.8.13"
+
+/* Define if vsnprintf() returns the correct value for formatted strings that
+ don't fit into size allowed */
+/* #undef H5_VSNPRINTF_WORKS */
+
+/* Data accuracy is prefered to speed during data conversions */
+#define H5_WANT_DATA_ACCURACY 1
+
+/* Check exception handling functions during data conversions */
+#define H5_WANT_DCONV_EXCEPTION 1
+
+/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
+ significant byte first (like Motorola and SPARC, unlike Intel). */
+#if !defined(__APPLE__)
+# ifndef WORDS_BIGENDIAN
+# undef WORDS_BIGENDIAN
+# endif
+#else
+# if defined __BIG_ENDIAN__
+# define WORDS_BIGENDIAN 1
+# endif
+#endif
+
+/* #undef WORDS_BIGENDIAN */
+
+/* Number of bits in a file offset, on hosts where this is settable. */
+/* #undef H5__FILE_OFFSET_BITS */
+
+/* Define for large files, on AIX-style hosts. */
+/* #undef H5__LARGE_FILES */
+
+/* Define to empty if `const' does not conform to ANSI C. */
+/* #undef H5_const */
+
+/* Define to `__inline__' or `__inline' if that's what the C compiler
+ calls it, or to nothing if 'inline' is not supported under any name. */
+#ifndef __cplusplus
+#define H5_inline __inline
+#endif
+
+/* Define to `long int' if <sys/types.h> does not define. */
+/* #undef H5_off_t */
+
+/* Define to `long' if <sys/types.h> does not define. */
+/* #undef H5_ptrdiff_t */
+
+/* Define to `unsigned long' if <sys/types.h> does not define. */
+/* #undef H5_size_t */
+
+/* Define to `long' if <sys/types.h> does not define. */
+/* #undef H5_ssize_t */
+
+#if defined(__cplusplus) && defined(inline)
+#undef inline
+#endif
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/H5public.h b/Resources/windows-libs/HDF5/include/H5public.h
new file mode 100644
index 0000000000000000000000000000000000000000..aaf0d749847fc8628e2f83328cbe7a8e864203b4
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5public.h
@@ -0,0 +1,343 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the HDF5 module.
+ */
+#ifndef _H5public_H
+#define _H5public_H
+
+/* Include files for public use... */
+/*
+ * Since H5pubconf.h is a generated header file, it is messy to try
+ * to put a #ifndef _H5pubconf_H ... #endif guard in it.
+ * HDF5 has set an internal rule that it is being included here.
+ * Source files should NOT include H5pubconf.h directly but include
+ * it via H5public.h. The #ifndef _H5public_H guard above would
+ * prevent repeated include.
+ */
+#include "H5pubconf.h" /*from configure */
+
+/* API Version macro wrapper definitions */
+#include "H5version.h"
+
+#ifdef H5_HAVE_FEATURES_H
+#include <features.h> /*for setting POSIX, BSD, etc. compatibility */
+#endif
+#ifdef H5_HAVE_SYS_TYPES_H
+#include <sys/types.h>
+#endif
+#ifdef H5_STDC_HEADERS
+# include <limits.h> /*for H5T_NATIVE_CHAR defn in H5Tpublic.h */
+#endif
+#ifndef __cplusplus
+# ifdef H5_HAVE_STDINT_H
+# include <stdint.h> /*for C9x types */
+# endif
+#else
+# ifdef H5_HAVE_STDINT_H_CXX
+# include <stdint.h> /*for C9x types when include from C++ */
+# endif
+#endif
+#ifdef H5_HAVE_INTTYPES_H
+# include <inttypes.h> /* For uint64_t on some platforms */
+#endif
+#ifdef H5_HAVE_STDDEF_H
+# include <stddef.h>
+#endif
+#ifdef H5_HAVE_PARALLEL
+# include <mpi.h>
+#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */
+# include <mpio.h>
+#endif
+#endif
+
+
+/* Include the Windows API adapter header early */
+#include "H5api_adpt.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Macros for enabling/disabling particular GCC warnings */
+/* (see the following web-sites for more info:
+ * http://www.dbp-consulting.com/tutorials/SuppressingGCCWarnings.html
+ * http://gcc.gnu.org/onlinedocs/gcc/Diagnostic-Pragmas.html#Diagnostic-Pragmas
+ */
+/* These pragmas are only implemented usefully in gcc 4.6+ */
+#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 406
+ #define H5_GCC_DIAG_STR(s) #s
+ #define H5_GCC_DIAG_JOINSTR(x,y) H5_GCC_DIAG_STR(x ## y)
+ #define H5_GCC_DIAG_DO_PRAGMA(x) _Pragma (#x)
+ #define H5_GCC_DIAG_PRAGMA(x) H5_GCC_DIAG_DO_PRAGMA(GCC diagnostic x)
+
+ #define H5_GCC_DIAG_OFF(x) H5_GCC_DIAG_PRAGMA(push) H5_GCC_DIAG_PRAGMA(ignored H5_GCC_DIAG_JOINSTR(-W,x))
+ #define H5_GCC_DIAG_ON(x) H5_GCC_DIAG_PRAGMA(pop)
+#else
+ #define H5_GCC_DIAG_OFF(x)
+ #define H5_GCC_DIAG_ON(x)
+#endif
+
+/* Version numbers */
+#define H5_VERS_MAJOR 1 /* For major interface/format changes */
+#define H5_VERS_MINOR 8 /* For minor interface/format changes */
+#define H5_VERS_RELEASE 13 /* For tweaks, bug-fixes, or development */
+#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */
+ /* Empty string for real releases. */
+#define H5_VERS_INFO "HDF5 library version: 1.8.13" /* Full version string */
+
+#define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \
+ H5_VERS_RELEASE)
+
+/* macros for comparing the version */
+#define H5_VERSION_GE(Maj,Min,Rel) \
+ (((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR==Min) && (H5_VERS_RELEASE>=Rel)) || \
+ ((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR>Min)) || \
+ (H5_VERS_MAJOR>Maj))
+
+#define H5_VERSION_LE(Maj,Min,Rel) \
+ (((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR==Min) && (H5_VERS_RELEASE<=Rel)) || \
+ ((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR<Min)) || \
+ (H5_VERS_MAJOR<Maj))
+
+/*
+ * Status return values. Failed integer functions in HDF5 result almost
+ * always in a negative value (unsigned failing functions sometimes return
+ * zero for failure) while successfull return is non-negative (often zero).
+ * The negative failure value is most commonly -1, but don't bet on it. The
+ * proper way to detect failure is something like:
+ *
+ * if((dset = H5Dopen2(file, name)) < 0)
+ * fprintf(stderr, "unable to open the requested dataset\n");
+ */
+typedef int herr_t;
+
+
+/*
+ * Boolean type. Successful return values are zero (false) or positive
+ * (true). The typical true value is 1 but don't bet on it. Boolean
+ * functions cannot fail. Functions that return `htri_t' however return zero
+ * (false), positive (true), or negative (failure). The proper way to test
+ * for truth from a htri_t function is:
+ *
+ * if ((retval = H5Tcommitted(type))>0) {
+ * printf("data type is committed\n");
+ * } else if (!retval) {
+ * printf("data type is not committed\n");
+ * } else {
+ * printf("error determining whether data type is committed\n");
+ * }
+ */
+typedef unsigned int hbool_t;
+typedef int htri_t;
+
+/* Define the ssize_t type if it not is defined */
+#if H5_SIZEOF_SSIZE_T==0
+/* Undefine this size, we will re-define it in one of the sections below */
+#undef H5_SIZEOF_SSIZE_T
+#if H5_SIZEOF_SIZE_T==H5_SIZEOF_INT
+typedef int ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_INT
+#elif H5_SIZEOF_SIZE_T==H5_SIZEOF_LONG
+typedef long ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_SIZE_T==H5_SIZEOF_LONG_LONG
+typedef long long ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_LONG_LONG
+#else /* Can't find matching type for ssize_t */
+# error "nothing appropriate for ssize_t"
+#endif
+#endif
+
+/*
+ * The sizes of file objects have their own types defined here, use a 64-bit
+ * type.
+ */
+#if H5_SIZEOF_LONG_LONG >= 8
+H5_GCC_DIAG_OFF(long-long)
+typedef unsigned long long hsize_t;
+typedef signed long long hssize_t;
+H5_GCC_DIAG_ON(long-long)
+# define H5_SIZEOF_HSIZE_T H5_SIZEOF_LONG_LONG
+# define H5_SIZEOF_HSSIZE_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for hsize_t"
+#endif
+
+/*
+ * File addresses have their own types.
+ */
+#if H5_SIZEOF_INT64_T>=8
+ typedef uint64_t haddr_t;
+# define HADDR_UNDEF ((haddr_t)(int64_t)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_INT64_T
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_LONG_LONG_INT
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_INT>=8
+ typedef unsigned haddr_t;
+# define HADDR_UNDEF ((haddr_t)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_INT
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_UNSIGNED
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_LONG>=8
+ typedef unsigned long haddr_t;
+# define HADDR_UNDEF ((haddr_t)(long)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_LONG
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_UNSIGNED_LONG
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef unsigned long long haddr_t;
+# define HADDR_UNDEF ((haddr_t)(long long)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_LONG_LONG
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_LONG_LONG_INT
+# endif /* H5_HAVE_PARALLEL */
+#else
+# error "nothing appropriate for haddr_t"
+#endif
+#if H5_SIZEOF_HADDR_T ==H5_SIZEOF_INT
+# define H5_PRINTF_HADDR_FMT "%u"
+#elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG
+# define H5_PRINTF_HADDR_FMT "%lu"
+#elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG_LONG
+# define H5_PRINTF_HADDR_FMT "%" H5_PRINTF_LL_WIDTH "u"
+#else
+# error "nothing appropriate for H5_PRINTF_HADDR_FMT"
+#endif
+#define HADDR_MAX (HADDR_UNDEF-1)
+
+/* uint32_t type is used for creation order field for messages. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_UINT32_T>=4
+#elif H5_SIZEOF_SHORT>=4
+ typedef short uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_SHORT
+#elif H5_SIZEOF_INT>=4
+ typedef unsigned int uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=4
+ typedef unsigned long uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_LONG
+#else
+# error "nothing appropriate for uint32_t"
+#endif
+
+/* int64_t type is used for creation order field for links. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_INT64_T>=8
+#elif H5_SIZEOF_INT>=8
+ typedef int int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=8
+ typedef long int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef long long int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for int64_t"
+#endif
+
+/* uint64_t type is used for fields for H5O_info_t. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_UINT64_T>=8
+#elif H5_SIZEOF_INT>=8
+ typedef unsigned uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=8
+ typedef unsigned long uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef unsigned long long uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for uint64_t"
+#endif
+
+/* Default value for all property list classes */
+#define H5P_DEFAULT 0
+
+/* Common iteration orders */
+typedef enum {
+ H5_ITER_UNKNOWN = -1, /* Unknown order */
+ H5_ITER_INC, /* Increasing order */
+ H5_ITER_DEC, /* Decreasing order */
+ H5_ITER_NATIVE, /* No particular order, whatever is fastest */
+ H5_ITER_N /* Number of iteration orders */
+} H5_iter_order_t;
+
+/* Iteration callback values */
+/* (Actually, any postive value will cause the iterator to stop and pass back
+ * that positive value to the function that called the iterator)
+ */
+#define H5_ITER_ERROR (-1)
+#define H5_ITER_CONT (0)
+#define H5_ITER_STOP (1)
+
+/*
+ * The types of indices on links in groups/attributes on objects.
+ * Primarily used for "<do> <foo> by index" routines and for iterating over
+ * links in groups/attributes on objects.
+ */
+typedef enum H5_index_t {
+ H5_INDEX_UNKNOWN = -1, /* Unknown index type */
+ H5_INDEX_NAME, /* Index on names */
+ H5_INDEX_CRT_ORDER, /* Index on creation order */
+ H5_INDEX_N /* Number of indices defined */
+} H5_index_t;
+
+/*
+ * Storage info struct used by H5O_info_t and H5F_info_t
+ */
+typedef struct H5_ih_info_t {
+ hsize_t index_size; /* btree and/or list */
+ hsize_t heap_size;
+} H5_ih_info_t;
+
+/* Functions in H5.c */
+H5_DLL herr_t H5open(void);
+H5_DLL herr_t H5close(void);
+H5_DLL herr_t H5dont_atexit(void);
+H5_DLL herr_t H5garbage_collect(void);
+H5_DLL herr_t H5set_free_list_limits (int reg_global_lim, int reg_list_lim,
+ int arr_global_lim, int arr_list_lim, int blk_global_lim,
+ int blk_list_lim);
+H5_DLL herr_t H5get_libversion(unsigned *majnum, unsigned *minnum,
+ unsigned *relnum);
+H5_DLL herr_t H5check_version(unsigned majnum, unsigned minnum,
+ unsigned relnum);
+H5_DLL herr_t H5free_memory(void *mem);
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/H5version.h b/Resources/windows-libs/HDF5/include/H5version.h
new file mode 100644
index 0000000000000000000000000000000000000000..58de2abafd097fe62acc19bf2799aa8a5011a90f
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/H5version.h
@@ -0,0 +1,419 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_vers -- do not edit */
+/* Add new versioned symbols to H5vers.txt file */
+
+
+#ifndef _H5version_H
+#define _H5version_H
+
+/* Issue error if contradicting macros have been defined. */
+#if defined(H5_USE_16_API) && defined(H5_NO_DEPRECATED_SYMBOLS)
+#error "Can't choose old API versions when deprecated APIs are disabled"
+#endif /* defined(H5_USE_16_API) && defined(H5_NO_DEPRECATED_SYMBOLS) */
+
+
+/* If a particular "global" version of the library's interfaces is chosen,
+ * set the versions for the API symbols affected.
+ *
+ * Note: If an application has already chosen a particular version for an
+ * API symbol, the individual API version macro takes priority.
+ */
+#if defined(H5_USE_16_API_DEFAULT) && !defined(H5_USE_16_API)
+#define H5_USE_16_API 1
+#endif /* H5_USE_16_API_DEFAULT && !H5_USE_16_API */
+
+#ifdef H5_USE_16_API
+
+/*************/
+/* Functions */
+/*************/
+
+#if !defined(H5Acreate_vers)
+#define H5Acreate_vers 1
+#endif /* !defined(H5Acreate_vers) */
+
+#if !defined(H5Aiterate_vers)
+#define H5Aiterate_vers 1
+#endif /* !defined(H5Aiterate_vers) */
+
+#if !defined(H5Dcreate_vers)
+#define H5Dcreate_vers 1
+#endif /* !defined(H5Dcreate_vers) */
+
+#if !defined(H5Dopen_vers)
+#define H5Dopen_vers 1
+#endif /* !defined(H5Dopen_vers) */
+
+#if !defined(H5Eclear_vers)
+#define H5Eclear_vers 1
+#endif /* !defined(H5Eclear_vers) */
+
+#if !defined(H5Eget_auto_vers)
+#define H5Eget_auto_vers 1
+#endif /* !defined(H5Eget_auto_vers) */
+
+#if !defined(H5Eprint_vers)
+#define H5Eprint_vers 1
+#endif /* !defined(H5Eprint_vers) */
+
+#if !defined(H5Epush_vers)
+#define H5Epush_vers 1
+#endif /* !defined(H5Epush_vers) */
+
+#if !defined(H5Eset_auto_vers)
+#define H5Eset_auto_vers 1
+#endif /* !defined(H5Eset_auto_vers) */
+
+#if !defined(H5Ewalk_vers)
+#define H5Ewalk_vers 1
+#endif /* !defined(H5Ewalk_vers) */
+
+#if !defined(H5Gcreate_vers)
+#define H5Gcreate_vers 1
+#endif /* !defined(H5Gcreate_vers) */
+
+#if !defined(H5Gopen_vers)
+#define H5Gopen_vers 1
+#endif /* !defined(H5Gopen_vers) */
+
+#if !defined(H5Pget_filter_vers)
+#define H5Pget_filter_vers 1
+#endif /* !defined(H5Pget_filter_vers) */
+
+#if !defined(H5Pget_filter_by_id_vers)
+#define H5Pget_filter_by_id_vers 1
+#endif /* !defined(H5Pget_filter_by_id_vers) */
+
+#if !defined(H5Pinsert_vers)
+#define H5Pinsert_vers 1
+#endif /* !defined(H5Pinsert_vers) */
+
+#if !defined(H5Pregister_vers)
+#define H5Pregister_vers 1
+#endif /* !defined(H5Pregister_vers) */
+
+#if !defined(H5Rget_obj_type_vers)
+#define H5Rget_obj_type_vers 1
+#endif /* !defined(H5Rget_obj_type_vers) */
+
+#if !defined(H5Tarray_create_vers)
+#define H5Tarray_create_vers 1
+#endif /* !defined(H5Tarray_create_vers) */
+
+#if !defined(H5Tcommit_vers)
+#define H5Tcommit_vers 1
+#endif /* !defined(H5Tcommit_vers) */
+
+#if !defined(H5Tget_array_dims_vers)
+#define H5Tget_array_dims_vers 1
+#endif /* !defined(H5Tget_array_dims_vers) */
+
+#if !defined(H5Topen_vers)
+#define H5Topen_vers 1
+#endif /* !defined(H5Topen_vers) */
+
+/************/
+/* Typedefs */
+/************/
+
+#if !defined(H5E_auto_t_vers)
+#define H5E_auto_t_vers 1
+#endif /* !defined(H5E_auto_t_vers) */
+
+#if !defined(H5Z_class_t_vers)
+#define H5Z_class_t_vers 1
+#endif /* !defined(H5Z_class_t_vers) */
+
+#endif /* H5_USE_16_API */
+
+
+/* Choose the correct version of each API symbol, defaulting to the latest
+ * version of each. The "best" name for API parameters/data structures
+ * that have changed definitions is also set. An error is issued for
+ * specifying an invalid API version.
+ */
+
+/*************/
+/* Functions */
+/*************/
+
+#if !defined(H5Acreate_vers) || H5Acreate_vers == 2
+#ifndef H5Acreate_vers
+#define H5Acreate_vers 2
+#endif /* H5Acreate_vers */
+#define H5Acreate H5Acreate2
+#elif H5Acreate_vers == 1
+#define H5Acreate H5Acreate1
+#else /* H5Acreate_vers */
+#error "H5Acreate_vers set to invalid value"
+#endif /* H5Acreate_vers */
+
+#if !defined(H5Aiterate_vers) || H5Aiterate_vers == 2
+#ifndef H5Aiterate_vers
+#define H5Aiterate_vers 2
+#endif /* H5Aiterate_vers */
+#define H5Aiterate H5Aiterate2
+#define H5A_operator_t H5A_operator2_t
+#elif H5Aiterate_vers == 1
+#define H5Aiterate H5Aiterate1
+#define H5A_operator_t H5A_operator1_t
+#else /* H5Aiterate_vers */
+#error "H5Aiterate_vers set to invalid value"
+#endif /* H5Aiterate_vers */
+
+#if !defined(H5Dcreate_vers) || H5Dcreate_vers == 2
+#ifndef H5Dcreate_vers
+#define H5Dcreate_vers 2
+#endif /* H5Dcreate_vers */
+#define H5Dcreate H5Dcreate2
+#elif H5Dcreate_vers == 1
+#define H5Dcreate H5Dcreate1
+#else /* H5Dcreate_vers */
+#error "H5Dcreate_vers set to invalid value"
+#endif /* H5Dcreate_vers */
+
+#if !defined(H5Dopen_vers) || H5Dopen_vers == 2
+#ifndef H5Dopen_vers
+#define H5Dopen_vers 2
+#endif /* H5Dopen_vers */
+#define H5Dopen H5Dopen2
+#elif H5Dopen_vers == 1
+#define H5Dopen H5Dopen1
+#else /* H5Dopen_vers */
+#error "H5Dopen_vers set to invalid value"
+#endif /* H5Dopen_vers */
+
+#if !defined(H5Eclear_vers) || H5Eclear_vers == 2
+#ifndef H5Eclear_vers
+#define H5Eclear_vers 2
+#endif /* H5Eclear_vers */
+#define H5Eclear H5Eclear2
+#elif H5Eclear_vers == 1
+#define H5Eclear H5Eclear1
+#else /* H5Eclear_vers */
+#error "H5Eclear_vers set to invalid value"
+#endif /* H5Eclear_vers */
+
+#if !defined(H5Eget_auto_vers) || H5Eget_auto_vers == 2
+#ifndef H5Eget_auto_vers
+#define H5Eget_auto_vers 2
+#endif /* H5Eget_auto_vers */
+#define H5Eget_auto H5Eget_auto2
+#elif H5Eget_auto_vers == 1
+#define H5Eget_auto H5Eget_auto1
+#else /* H5Eget_auto_vers */
+#error "H5Eget_auto_vers set to invalid value"
+#endif /* H5Eget_auto_vers */
+
+#if !defined(H5Eprint_vers) || H5Eprint_vers == 2
+#ifndef H5Eprint_vers
+#define H5Eprint_vers 2
+#endif /* H5Eprint_vers */
+#define H5Eprint H5Eprint2
+#elif H5Eprint_vers == 1
+#define H5Eprint H5Eprint1
+#else /* H5Eprint_vers */
+#error "H5Eprint_vers set to invalid value"
+#endif /* H5Eprint_vers */
+
+#if !defined(H5Epush_vers) || H5Epush_vers == 2
+#ifndef H5Epush_vers
+#define H5Epush_vers 2
+#endif /* H5Epush_vers */
+#define H5Epush H5Epush2
+#elif H5Epush_vers == 1
+#define H5Epush H5Epush1
+#else /* H5Epush_vers */
+#error "H5Epush_vers set to invalid value"
+#endif /* H5Epush_vers */
+
+#if !defined(H5Eset_auto_vers) || H5Eset_auto_vers == 2
+#ifndef H5Eset_auto_vers
+#define H5Eset_auto_vers 2
+#endif /* H5Eset_auto_vers */
+#define H5Eset_auto H5Eset_auto2
+#elif H5Eset_auto_vers == 1
+#define H5Eset_auto H5Eset_auto1
+#else /* H5Eset_auto_vers */
+#error "H5Eset_auto_vers set to invalid value"
+#endif /* H5Eset_auto_vers */
+
+#if !defined(H5Ewalk_vers) || H5Ewalk_vers == 2
+#ifndef H5Ewalk_vers
+#define H5Ewalk_vers 2
+#endif /* H5Ewalk_vers */
+#define H5Ewalk H5Ewalk2
+#define H5E_error_t H5E_error2_t
+#define H5E_walk_t H5E_walk2_t
+#elif H5Ewalk_vers == 1
+#define H5Ewalk H5Ewalk1
+#define H5E_error_t H5E_error1_t
+#define H5E_walk_t H5E_walk1_t
+#else /* H5Ewalk_vers */
+#error "H5Ewalk_vers set to invalid value"
+#endif /* H5Ewalk_vers */
+
+#if !defined(H5Gcreate_vers) || H5Gcreate_vers == 2
+#ifndef H5Gcreate_vers
+#define H5Gcreate_vers 2
+#endif /* H5Gcreate_vers */
+#define H5Gcreate H5Gcreate2
+#elif H5Gcreate_vers == 1
+#define H5Gcreate H5Gcreate1
+#else /* H5Gcreate_vers */
+#error "H5Gcreate_vers set to invalid value"
+#endif /* H5Gcreate_vers */
+
+#if !defined(H5Gopen_vers) || H5Gopen_vers == 2
+#ifndef H5Gopen_vers
+#define H5Gopen_vers 2
+#endif /* H5Gopen_vers */
+#define H5Gopen H5Gopen2
+#elif H5Gopen_vers == 1
+#define H5Gopen H5Gopen1
+#else /* H5Gopen_vers */
+#error "H5Gopen_vers set to invalid value"
+#endif /* H5Gopen_vers */
+
+#if !defined(H5Pget_filter_vers) || H5Pget_filter_vers == 2
+#ifndef H5Pget_filter_vers
+#define H5Pget_filter_vers 2
+#endif /* H5Pget_filter_vers */
+#define H5Pget_filter H5Pget_filter2
+#elif H5Pget_filter_vers == 1
+#define H5Pget_filter H5Pget_filter1
+#else /* H5Pget_filter_vers */
+#error "H5Pget_filter_vers set to invalid value"
+#endif /* H5Pget_filter_vers */
+
+#if !defined(H5Pget_filter_by_id_vers) || H5Pget_filter_by_id_vers == 2
+#ifndef H5Pget_filter_by_id_vers
+#define H5Pget_filter_by_id_vers 2
+#endif /* H5Pget_filter_by_id_vers */
+#define H5Pget_filter_by_id H5Pget_filter_by_id2
+#elif H5Pget_filter_by_id_vers == 1
+#define H5Pget_filter_by_id H5Pget_filter_by_id1
+#else /* H5Pget_filter_by_id_vers */
+#error "H5Pget_filter_by_id_vers set to invalid value"
+#endif /* H5Pget_filter_by_id_vers */
+
+#if !defined(H5Pinsert_vers) || H5Pinsert_vers == 2
+#ifndef H5Pinsert_vers
+#define H5Pinsert_vers 2
+#endif /* H5Pinsert_vers */
+#define H5Pinsert H5Pinsert2
+#elif H5Pinsert_vers == 1
+#define H5Pinsert H5Pinsert1
+#else /* H5Pinsert_vers */
+#error "H5Pinsert_vers set to invalid value"
+#endif /* H5Pinsert_vers */
+
+#if !defined(H5Pregister_vers) || H5Pregister_vers == 2
+#ifndef H5Pregister_vers
+#define H5Pregister_vers 2
+#endif /* H5Pregister_vers */
+#define H5Pregister H5Pregister2
+#elif H5Pregister_vers == 1
+#define H5Pregister H5Pregister1
+#else /* H5Pregister_vers */
+#error "H5Pregister_vers set to invalid value"
+#endif /* H5Pregister_vers */
+
+#if !defined(H5Rget_obj_type_vers) || H5Rget_obj_type_vers == 2
+#ifndef H5Rget_obj_type_vers
+#define H5Rget_obj_type_vers 2
+#endif /* H5Rget_obj_type_vers */
+#define H5Rget_obj_type H5Rget_obj_type2
+#elif H5Rget_obj_type_vers == 1
+#define H5Rget_obj_type H5Rget_obj_type1
+#else /* H5Rget_obj_type_vers */
+#error "H5Rget_obj_type_vers set to invalid value"
+#endif /* H5Rget_obj_type_vers */
+
+#if !defined(H5Tarray_create_vers) || H5Tarray_create_vers == 2
+#ifndef H5Tarray_create_vers
+#define H5Tarray_create_vers 2
+#endif /* H5Tarray_create_vers */
+#define H5Tarray_create H5Tarray_create2
+#elif H5Tarray_create_vers == 1
+#define H5Tarray_create H5Tarray_create1
+#else /* H5Tarray_create_vers */
+#error "H5Tarray_create_vers set to invalid value"
+#endif /* H5Tarray_create_vers */
+
+#if !defined(H5Tcommit_vers) || H5Tcommit_vers == 2
+#ifndef H5Tcommit_vers
+#define H5Tcommit_vers 2
+#endif /* H5Tcommit_vers */
+#define H5Tcommit H5Tcommit2
+#elif H5Tcommit_vers == 1
+#define H5Tcommit H5Tcommit1
+#else /* H5Tcommit_vers */
+#error "H5Tcommit_vers set to invalid value"
+#endif /* H5Tcommit_vers */
+
+#if !defined(H5Tget_array_dims_vers) || H5Tget_array_dims_vers == 2
+#ifndef H5Tget_array_dims_vers
+#define H5Tget_array_dims_vers 2
+#endif /* H5Tget_array_dims_vers */
+#define H5Tget_array_dims H5Tget_array_dims2
+#elif H5Tget_array_dims_vers == 1
+#define H5Tget_array_dims H5Tget_array_dims1
+#else /* H5Tget_array_dims_vers */
+#error "H5Tget_array_dims_vers set to invalid value"
+#endif /* H5Tget_array_dims_vers */
+
+#if !defined(H5Topen_vers) || H5Topen_vers == 2
+#ifndef H5Topen_vers
+#define H5Topen_vers 2
+#endif /* H5Topen_vers */
+#define H5Topen H5Topen2
+#elif H5Topen_vers == 1
+#define H5Topen H5Topen1
+#else /* H5Topen_vers */
+#error "H5Topen_vers set to invalid value"
+#endif /* H5Topen_vers */
+
+/************/
+/* Typedefs */
+/************/
+
+#if !defined(H5E_auto_t_vers) || H5E_auto_t_vers == 2
+#ifndef H5E_auto_t_vers
+#define H5E_auto_t_vers 2
+#endif /* H5E_auto_t_vers */
+#define H5E_auto_t H5E_auto2_t
+#elif H5E_auto_t_vers == 1
+#define H5E_auto_t H5E_auto1_t
+#else /* H5E_auto_t_vers */
+#error "H5E_auto_t_vers set to invalid value"
+#endif /* H5E_auto_t_vers */
+
+
+#if !defined(H5Z_class_t_vers) || H5Z_class_t_vers == 2
+#ifndef H5Z_class_t_vers
+#define H5Z_class_t_vers 2
+#endif /* H5Z_class_t_vers */
+#define H5Z_class_t H5Z_class2_t
+#elif H5Z_class_t_vers == 1
+#define H5Z_class_t H5Z_class1_t
+#else /* H5Z_class_t_vers */
+#error "H5Z_class_t_vers set to invalid value"
+#endif /* H5Z_class_t_vers */
+
+#endif /* H5version_H */
+
diff --git a/Resources/windows-libs/HDF5/include/SZconfig.h b/Resources/windows-libs/HDF5/include/SZconfig.h
new file mode 100644
index 0000000000000000000000000000000000000000..6e7766e5ebb212cbcdaf8899340523380d6aeb70
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/SZconfig.h
@@ -0,0 +1,79 @@
+/* SZconfig.h.in. */
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+/* #undef HAVE_DLFCN_H */
+
+/* Define to 1 if you don't have `vprintf' but do have `_doprnt.' */
+/* #undef HAVE_DOPRNT */
+
+/* Define if encoding is enabled */
+#define HAVE_ENCODING 1
+
+/* Define to 1 if you have the <fcntl.h> header file. */
+#define HAVE_FCNTL_H 1
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+/* #undef HAVE_INTTYPES_H */
+
+/* Define to 1 if you have the <memory.h> header file. */
+#define HAVE_MEMORY_H 1
+
+/* Define to 1 if you have the `memset' function. */
+/* #undef HAVE_MEMSET */
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#define HAVE_STDINT_H 1
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#define HAVE_STDLIB_H 1
+
+/* Define to 1 if you have the <strings.h> header file. */
+/* #undef HAVE_STRINGS_H */
+
+/* Define to 1 if you have the <string.h> header file. */
+#define HAVE_STRING_H 1
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#define HAVE_SYS_STAT_H 1
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#define HAVE_SYS_TYPES_H 1
+
+/* Define to 1 if you have the <unistd.h> header file. */
+/* #undef HAVE_UNISTD_H */
+
+/* Define to 1 if you have the `vprintf' function. */
+/* #undef HAVE_VPRINTF */
+
+/* Name of package */
+#define SZIP_PACKAGE "szip"
+
+/* Define to the address where bug reports for this package should be sent. */
+#define SZIP_PACKAGE_BUGREPORT "help@hdfgroup.org"
+
+/* Define to the full name of this package. */
+#define SZIP_PACKAGE_NAME "SZIP"
+
+/* Define to the full name and version of this package. */
+#define SZIP_PACKAGE_STRING "SZIP 2.1"
+
+/* Define to the one symbol short name of this package. */
+#define SZIP_PACKAGE_TARNAME "szip"
+
+/* Define to the version of this package. */
+#define SZIP_PACKAGE_VERSION "2.1"
+
+/* Define to 1 if you have the ANSI C header files. */
+#define STDC_HEADERS 1
+
+/* Version number of package */
+#define VERSION "2.1"
+
+/* Define to empty if `const' does not conform to ANSI C. */
+/* #undef const */
+
+/* Define to `unsigned int' if <sys/types.h> does not define. */
+/* #undef size_t */
+
+/* Define if cmake is used and building dynamic libraries */
+#define SZ_BUILT_AS_DYNAMIC_LIB 1
diff --git a/Resources/windows-libs/HDF5/include/h5_dble_interface.mod b/Resources/windows-libs/HDF5/include/h5_dble_interface.mod
new file mode 100644
index 0000000000000000000000000000000000000000..4e1b9b1d7538c829ffba6327e256f2a18678f0da
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5_dble_interface.mod differ
diff --git a/Resources/windows-libs/HDF5/include/h5a.mod b/Resources/windows-libs/HDF5/include/h5a.mod
new file mode 100644
index 0000000000000000000000000000000000000000..0aa7f05e4fce1141e777d21bc86a8dc12cfd3def
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5a.mod differ
diff --git a/Resources/windows-libs/HDF5/include/h5a_provisional.mod b/Resources/windows-libs/HDF5/include/h5a_provisional.mod
new file mode 100644
index 0000000000000000000000000000000000000000..1c2bf82c1279283a5901cea3caf674dcff17d87d
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5a_provisional.mod differ
diff --git a/Resources/windows-libs/HDF5/include/h5d.mod b/Resources/windows-libs/HDF5/include/h5d.mod
new file mode 100644
index 0000000000000000000000000000000000000000..77303acbca928abd8c673607bf1d224e3a07ef30
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5d.mod differ
diff --git a/Resources/windows-libs/HDF5/include/h5d_provisional.mod b/Resources/windows-libs/HDF5/include/h5d_provisional.mod
new file mode 100644
index 0000000000000000000000000000000000000000..c0d733d64673c0a863582e144fb37d3ba2f8d121
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5d_provisional.mod differ
diff --git a/Resources/windows-libs/HDF5/include/h5diff.h b/Resources/windows-libs/HDF5/include/h5diff.h
new file mode 100644
index 0000000000000000000000000000000000000000..04b640f731671232899979d0822d4c5e72f796df
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5diff.h
@@ -0,0 +1,200 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5DIFF_H__
+#define H5DIFF_H__
+
+#include "hdf5.h"
+#include "h5trav.h"
+
+/*
+ * Debug printf macros. The prefix allows output filtering by test scripts.
+ */
+#ifdef H5DIFF_DEBUG
+#define h5difftrace(x) HDfprintf(stderr, "h5diff debug: " x)
+#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2)
+#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3)
+#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4)
+#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5)
+#else
+#define h5difftrace(x)
+#define h5diffdebug2(x1, x2)
+#define h5diffdebug3(x1, x2, x3)
+#define h5diffdebug4(x1, x2, x3, x4)
+#define h5diffdebug5(x1, x2, x3, x4, x5)
+#endif
+
+#define MAX_FILENAME 1024
+
+/*-------------------------------------------------------------------------
+ * This is used to pass multiple args into diff().
+ * Passing this instead of several each arg provides smoother extensibility
+ * through its members along with MPI code for ph5diff
+ * as it doesn't require interface change.
+ *------------------------------------------------------------------------*/
+typedef struct {
+ h5trav_type_t type[2];
+ hbool_t is_same_trgobj;
+} diff_args_t;
+/*-------------------------------------------------------------------------
+ * command line options
+ *-------------------------------------------------------------------------
+ */
+/* linked list to keep exclude path list */
+struct exclude_path_list {
+ char *obj_path;
+ h5trav_type_t obj_type;
+ struct exclude_path_list * next;
+};
+
+typedef struct {
+ int m_quiet; /* quiet mide: no output at all */
+ int m_report; /* report mode: print the data */
+ int m_verbose; /* verbose mode: print the data, list of objcets, warnings */
+ int m_verbose_level; /* control verbose details */
+ int d; /* delta, absolute value to compare */
+ double delta; /* delta value */
+ int p; /* relative error to compare*/
+ int use_system_epsilon; /* flag to use system epsilon (1 or 0) */
+ double percent; /* relative error value */
+ int n; /* count, compare up to count */
+ hsize_t count; /* count value */
+ hbool_t follow_links; /* follow symbolic links */
+ int no_dangle_links; /* return error when find dangling link */
+ int err_stat; /* an error ocurred (1, error, 0, no error) */
+ int cmn_objs; /* do we have common objects */
+ int not_cmp; /* are the objects comparable */
+ int contents; /* equal contents */
+ int do_nans; /* consider Nans while diffing floats */
+ int m_list_not_cmp; /* list not comparable messages */
+ int exclude_path; /* exclude path to an object */
+ struct exclude_path_list * exclude; /* keep exclude path list */
+} diff_opt_t;
+
+
+/*-------------------------------------------------------------------------
+ * public functions
+ *-------------------------------------------------------------------------
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5TOOLS_DLL hsize_t h5diff(const char *fname1,
+ const char *fname2,
+ const char *objname1,
+ const char *objname2,
+ diff_opt_t *options);
+
+H5TOOLS_DLL hsize_t diff( hid_t file1_id,
+ const char *path1,
+ hid_t file2_id,
+ const char *path2,
+ diff_opt_t *options,
+ diff_args_t *argdata);
+
+#ifdef H5_HAVE_PARALLEL
+H5TOOLS_DLL void phdiff_dismiss_workers(void);
+H5TOOLS_DLL void print_manager_output(void);
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+
+
+/*-------------------------------------------------------------------------
+ * private functions
+ *-------------------------------------------------------------------------
+ */
+
+
+hsize_t diff_dataset( hid_t file1_id,
+ hid_t file2_id,
+ const char *obj1_name,
+ const char *obj2_name,
+ diff_opt_t *options);
+
+hsize_t diff_datasetid( hid_t dset1_id,
+ hid_t dset2_id,
+ const char *obj1_name,
+ const char *obj2_name,
+ diff_opt_t *options);
+
+
+hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1,
+ hid_t file2_id, const char *grp2, trav_info_t *info2,
+ trav_table_t *table, diff_opt_t *options );
+
+hsize_t diff_array( void *_mem1,
+ void *_mem2,
+ hsize_t nelmts,
+ hsize_t hyper_start,
+ int rank,
+ hsize_t *dims,
+ diff_opt_t *options,
+ const char *name1,
+ const char *name2,
+ hid_t m_type,
+ hid_t container1_id,
+ hid_t container2_id); /* dataset where the reference came from*/
+
+
+int diff_can_type( hid_t f_type1, /* file data type */
+ hid_t f_type2, /* file data type */
+ int rank1,
+ int rank2,
+ hsize_t *dims1,
+ hsize_t *dims2,
+ hsize_t *maxdim1,
+ hsize_t *maxdim2,
+ const char *obj1_name,
+ const char *obj2_name,
+ diff_opt_t *options,
+ int is_compound);
+
+
+hsize_t diff_attr(hid_t loc1_id,
+ hid_t loc2_id,
+ const char *path1,
+ const char *path2,
+ diff_opt_t *options);
+
+
+/*-------------------------------------------------------------------------
+ * utility functions
+ *-------------------------------------------------------------------------
+ */
+
+/* in h5diff_util.c */
+void print_found(hsize_t nfound);
+void print_type(hid_t type);
+const char* diff_basename(const char *name);
+const char* get_type(h5trav_type_t type);
+const char* get_class(H5T_class_t tclass);
+const char* get_sign(H5T_sign_t sign);
+void print_dimensions (int rank, hsize_t *dims);
+herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id,
+ hid_t *m_tid1, hid_t *m_tid2,
+ size_t *m_size1, size_t *m_size2);
+/* in h5diff.c */
+int print_objname(diff_opt_t *options, hsize_t nfound);
+void do_print_objname (const char *OBJ, const char *path1, const char *path2, diff_opt_t * opts);
+void do_print_attrname (const char *attr, const char *path1, const char *path2);
+
+#endif /* H5DIFF_H__ */
+
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diff --git a/Resources/windows-libs/HDF5/include/h5tools.h b/Resources/windows-libs/HDF5/include/h5tools.h
new file mode 100644
index 0000000000000000000000000000000000000000..d6c3720b4b61a5afce56f4a95ca6ea5b2c69d883
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5tools.h
@@ -0,0 +1,598 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Thursday, July 23, 1998
+ *
+ * Purpose: Support functions for the various tools.
+ */
+#ifndef H5TOOLS_H__
+#define H5TOOLS_H__
+
+#include "hdf5.h"
+#include "h5tools_error.h"
+
+#define ESCAPE_HTML 1
+#define OPT(X,S) ((X) ? (X) : (S))
+#define OPTIONAL_LINE_BREAK "\001" /* Special strings embedded in the output */
+#define START_OF_DATA 0x0001
+#define END_OF_DATA 0x0002
+
+/* format for hsize_t */
+#define HSIZE_T_FORMAT "%" H5_PRINTF_LL_WIDTH "u"
+
+#define H5TOOLS_DUMP_MAX_RANK H5S_MAX_RANK
+
+/* Stream macros */
+#define FLUSHSTREAM(S) if(S != NULL) HDfflush(S)
+#define PRINTSTREAM(S, F, ...) if(S != NULL) HDfprintf(S, F, __VA_ARGS__)
+#define PRINTVALSTREAM(S, V) if(S != NULL) HDfprintf(S, V)
+#define PUTSTREAM(X,S) if(S != NULL) HDfputs(X, S);
+
+/*
+ * Strings for output - these were duplicated from the h5dump.h
+ * file in order to support region reference data display
+ */
+#define ATTRIBUTE "ATTRIBUTE"
+#define BLOCK "BLOCK"
+#define SUPER_BLOCK "SUPER_BLOCK"
+#define COMPRESSION "COMPRESSION"
+#define CONCATENATOR "//"
+#define COMPLEX "COMPLEX"
+#define COUNT "COUNT"
+#define CSET "CSET"
+#define CTYPE "CTYPE"
+#define DATA "DATA"
+#define DATASPACE "DATASPACE"
+#define EXTERNAL "EXTERNAL"
+#define FILENO "FILENO"
+#define HARDLINK "HARDLINK"
+#define NLINK "NLINK"
+#define OBJID "OBJECTID"
+#define OBJNO "OBJNO"
+#define S_SCALAR "SCALAR"
+#define S_SIMPLE "SIMPLE"
+#define S_NULL "NULL"
+#define SOFTLINK "SOFTLINK"
+#define EXTLINK "EXTERNAL_LINK"
+#define UDLINK "USERDEFINED_LINK"
+#define START "START"
+#define STRIDE "STRIDE"
+#define STRSIZE "STRSIZE"
+#define STRPAD "STRPAD"
+#define SUBSET "SUBSET"
+#define FILTERS "FILTERS"
+#define DEFLATE "COMPRESSION DEFLATE"
+#define DEFLATE_LEVEL "LEVEL"
+#define SHUFFLE "PREPROCESSING SHUFFLE"
+#define FLETCHER32 "CHECKSUM FLETCHER32"
+#define SZIP "COMPRESSION SZIP"
+#define NBIT "COMPRESSION NBIT"
+#define SCALEOFFSET "COMPRESSION SCALEOFFSET"
+#define SCALEOFFSET_MINBIT "MIN BITS"
+#define STORAGE_LAYOUT "STORAGE_LAYOUT"
+#define CONTIGUOUS "CONTIGUOUS"
+#define COMPACT "COMPACT"
+#define CHUNKED "CHUNKED"
+#define EXTERNAL_FILE "EXTERNAL_FILE"
+#define FILLVALUE "FILLVALUE"
+#define FILE_CONTENTS "FILE_CONTENTS"
+#define PACKED_BITS "PACKED_BITS"
+#define PACKED_OFFSET "OFFSET"
+#define PACKED_LENGTH "LENGTH"
+
+#define BEGIN "{"
+#define END "}"
+
+/*
+ * dump structure for output - this was duplicated from the h5dump.h
+ * file in order to support region reference data display
+ */
+typedef struct h5tools_dump_header_t {
+ const char *name;
+ const char *filebegin;
+ const char *fileend;
+ const char *bootblockbegin;
+ const char *bootblockend;
+ const char *groupbegin;
+ const char *groupend;
+ const char *datasetbegin;
+ const char *datasetend;
+ const char *attributebegin;
+ const char *attributeend;
+ const char *datatypebegin;
+ const char *datatypeend;
+ const char *dataspacebegin;
+ const char *dataspaceend;
+ const char *databegin;
+ const char *dataend;
+ const char *softlinkbegin;
+ const char *softlinkend;
+ const char *extlinkbegin;
+ const char *extlinkend;
+ const char *udlinkbegin;
+ const char *udlinkend;
+ const char *subsettingbegin;
+ const char *subsettingend;
+ const char *startbegin;
+ const char *startend;
+ const char *stridebegin;
+ const char *strideend;
+ const char *countbegin;
+ const char *countend;
+ const char *blockbegin;
+ const char *blockend;
+
+ const char *fileblockbegin;
+ const char *fileblockend;
+ const char *bootblockblockbegin;
+ const char *bootblockblockend;
+ const char *groupblockbegin;
+ const char *groupblockend;
+ const char *datasetblockbegin;
+ const char *datasetblockend;
+ const char *attributeblockbegin;
+ const char *attributeblockend;
+ const char *datatypeblockbegin;
+ const char *datatypeblockend;
+ const char *dataspaceblockbegin;
+ const char *dataspaceblockend;
+ const char *datablockbegin;
+ const char *datablockend;
+ const char *softlinkblockbegin;
+ const char *softlinkblockend;
+ const char *extlinkblockbegin;
+ const char *extlinkblockend;
+ const char *udlinkblockbegin;
+ const char *udlinkblockend;
+ const char *strblockbegin;
+ const char *strblockend;
+ const char *enumblockbegin;
+ const char *enumblockend;
+ const char *structblockbegin;
+ const char *structblockend;
+ const char *vlenblockbegin;
+ const char *vlenblockend;
+ const char *subsettingblockbegin;
+ const char *subsettingblockend;
+ const char *startblockbegin;
+ const char *startblockend;
+ const char *strideblockbegin;
+ const char *strideblockend;
+ const char *countblockbegin;
+ const char *countblockend;
+ const char *blockblockbegin;
+ const char *blockblockend;
+
+ const char *dataspacedescriptionbegin;
+ const char *dataspacedescriptionend;
+ const char *dataspacedimbegin;
+ const char *dataspacedimend;
+
+} h5tools_dump_header_t;
+
+/*
+ * Information about how to format output.
+ */
+typedef struct h5tool_format_t {
+ /*
+ * Fields associated with formatting numeric data. If a datatype matches
+ * multiple formats based on its size, then the first applicable format
+ * from this list is used. However, if `raw' is non-zero then dump all
+ * data in hexadecimal format without translating from what appears on
+ * disk.
+ *
+ * raw: If set then print all data as hexadecimal without
+ * performing any conversion from disk.
+ *
+ * fmt_raw: The printf() format for each byte of raw data. The
+ * default is `%02x'.
+ *
+ * fmt_int: The printf() format to use when rendering data which is
+ * typed `int'. The default is `%d'.
+ *
+ * fmt_uint: The printf() format to use when rendering data which is
+ * typed `unsigned'. The default is `%u'.
+ *
+ * fmt_schar: The printf() format to use when rendering data which is
+ * typed `signed char'. The default is `%d'. This format is
+ * used ony if the `ascii' field is zero.
+ *
+ * fmt_uchar: The printf() format to use when rendering data which is
+ * typed `unsigned char'. The default is `%u'. This format
+ * is used only if the `ascii' field is zero.
+ *
+ * fmt_short: The printf() format to use when rendering data which is
+ * typed `short'. The default is `%d'.
+ *
+ * fmt_ushort: The printf() format to use when rendering data which is
+ * typed `unsigned short'. The default is `%u'.
+ *
+ * fmt_long: The printf() format to use when rendering data which is
+ * typed `long'. The default is `%ld'.
+ *
+ * fmt_ulong: The printf() format to use when rendering data which is
+ * typed `unsigned long'. The default is `%lu'.
+ *
+ * fmt_llong: The printf() format to use when rendering data which is
+ * typed `long long'. The default depends on what printf()
+ * format is available to print this datatype.
+ *
+ * fmt_ullong: The printf() format to use when rendering data which is
+ * typed `unsigned long long'. The default depends on what
+ * printf() format is available to print this datatype.
+ *
+ * fmt_double: The printf() format to use when rendering data which is
+ * typed `double'. The default is `%g'.
+ *
+ * fmt_float: The printf() format to use when rendering data which is
+ * typed `float'. The default is `%g'.
+ *
+ * ascii: If set then print 1-byte integer values as an ASCII
+ * character (no quotes). If the character is one of the
+ * standard C escapes then print the escaped version. If
+ * the character is unprintable then print a 3-digit octal
+ * escape. If `ascii' is zero then then 1-byte integers are
+ * printed as numeric values. The default is zero.
+ *
+ * str_locale: Determines how strings are printed. If zero then strings
+ * are printed like in C except. If set to ESCAPE_HTML then
+ * strings are printed using HTML encoding where each
+ * character not in the class [a-zA-Z0-9] is substituted
+ * with `%XX' where `X' is a hexadecimal digit.
+ *
+ * str_repeat: If set to non-zero then any character value repeated N
+ * or more times is printed as 'C'*N
+ *
+ * Numeric data is also subject to the formats for individual elements.
+ */
+ hbool_t raw;
+ const char *fmt_raw;
+ const char *fmt_int;
+ const char *fmt_uint;
+ const char *fmt_schar;
+ const char *fmt_uchar;
+ const char *fmt_short;
+ const char *fmt_ushort;
+ const char *fmt_long;
+ const char *fmt_ulong;
+ const char *fmt_llong;
+ const char *fmt_ullong;
+ const char *fmt_double;
+ const char *fmt_float;
+ int ascii;
+ int str_locale;
+ int str_repeat;
+
+ /*
+ * Fields associated with compound array members.
+ *
+ * pre: A string to print at the beginning of each array. The
+ * default value is the left square bracket `['.
+ *
+ * sep: A string to print between array values. The default
+ * value is a ",\001" ("\001" indicates an optional line
+ * break).
+ *
+ * suf: A string to print at the end of each array. The default
+ * value is a right square bracket `]'.
+ *
+ * linebreaks: a boolean value to determine if we want to break the line
+ * after each row of an array.
+ */
+ const char *arr_pre;
+ const char *arr_sep;
+ const char *arr_suf;
+ int arr_linebreak;
+
+ /*
+ * Fields associated with compound data types.
+ *
+ * name: How the name of the struct member is printed in the
+ * values. By default the name is not printed, but a
+ * reasonable setting might be "%s=" which prints the name
+ * followed by an equal sign and then the value.
+ *
+ * sep: A string that separates one member from another. The
+ * default is ", \001" (the \001 indicates an optional
+ * line break to allow structs to span multiple lines of
+ * output).
+ *
+ * pre: A string to print at the beginning of a compound type.
+ * The default is a left curly brace.
+ *
+ * suf: A string to print at the end of each compound type. The
+ * default is right curly brace.
+ *
+ * end: a string to print after we reach the last element of
+ * each compound type. prints out before the suf.
+ */
+ const char *cmpd_name;
+ const char *cmpd_sep;
+ const char *cmpd_pre;
+ const char *cmpd_suf;
+ const char *cmpd_end;
+
+ /*
+ * Fields associated with vlen data types.
+ *
+ * sep: A string that separates one member from another. The
+ * default is ", \001" (the \001 indicates an optional
+ * line break to allow structs to span multiple lines of
+ * output).
+ *
+ * pre: A string to print at the beginning of a vlen type.
+ * The default is a left parentheses.
+ *
+ * suf: A string to print at the end of each vlen type. The
+ * default is a right parentheses.
+ *
+ * end: a string to print after we reach the last element of
+ * each compound type. prints out before the suf.
+ */
+ const char *vlen_sep;
+ const char *vlen_pre;
+ const char *vlen_suf;
+ const char *vlen_end;
+
+ /*
+ * Fields associated with the individual elements.
+ *
+ * fmt: A printf(3c) format to use to print the value string
+ * after it has been rendered. The default is "%s".
+ *
+ * suf1: This string is appended to elements which are followed by
+ * another element whether the following element is on the
+ * same line or the next line. The default is a comma.
+ *
+ * suf2: This string is appended (after `suf1') to elements which
+ * are followed on the same line by another element. The
+ * default is a single space.
+ */
+ const char *elmt_fmt;
+ const char *elmt_suf1;
+ const char *elmt_suf2;
+
+ /*
+ * Fields associated with the index values printed at the left edge of
+ * each line of output.
+ *
+ * n_fmt: Each index value is printed according to this printf(3c)
+ * format string which should include a format for a long
+ * integer. The default is "%lu".
+ *
+ * sep: Each integer in the index list will be separated from the
+ * others by this string, which defaults to a comma.
+ *
+ * fmt: After the index values are formated individually and
+ * separated from one another by some string, the entire
+ * resulting string will be formated according to this
+ * printf(3c) format which should include a format for a
+ * character string. The default is "%s".
+ */
+ const char *idx_n_fmt; /*index number format */
+ const char *idx_sep; /*separator between numbers */
+ const char *idx_fmt; /*entire index format */
+
+ /*
+ * Fields associated with entire lines.
+ *
+ * ncols: Number of columns per line defaults to 80.
+ *
+ * per_line: If this field has a positive value then every Nth element
+ * will be printed at the beginning of a line.
+ *
+ * pre: Each line of output contains an optional prefix area
+ * before the data. This area can contain the index for the
+ * first datum (represented by `%s') as well as other
+ * constant text. The default value is `%s'.
+ *
+ * 1st: This is the format to print at the beginning of the first
+ * line of output. The default value is the current value of
+ * `pre' described above.
+ *
+ * cont: This is the format to print at the beginning of each line
+ * which was continued because the line was split onto
+ * multiple lines. This often happens with compound
+ * data which is longer than one line of output. The default
+ * value is the current value of the `pre' field
+ * described above.
+ *
+ * suf: This character string will be appended to each line of
+ * output. It should not contain line feeds. The default
+ * is the empty string.
+ *
+ * sep: A character string to be printed after every line feed
+ * defaulting to the empty string. It should end with a
+ * line feed.
+ *
+ * multi_new: Indicates the algorithm to use when data elements tend to
+ * occupy more than one line of output. The possible values
+ * are (zero is the default):
+ *
+ * 0: No consideration. Each new element is printed
+ * beginning where the previous element ended.
+ *
+ * 1: Print the current element beginning where the
+ * previous element left off. But if that would result
+ * in the element occupying more than one line and it
+ * would only occupy one line if it started at the
+ * beginning of a line, then it is printed at the
+ * beginning of the next line.
+ *
+ * multi_new: If an element is continued onto additional lines then
+ * should the following element begin on the next line? The
+ * default is to start the next element on the same line
+ * unless it wouldn't fit.
+ *
+ * indentlevel: a string that shows how far to indent if extra spacing
+ * is needed. dumper uses it.
+ */
+ unsigned line_ncols; /*columns of output */
+ size_t line_per_line; /*max elements per line */
+ const char *line_pre; /*prefix at front of each line */
+ const char *line_1st; /*alternate pre. on first line */
+ const char *line_cont; /*alternate pre. on continuation*/
+ const char *line_suf; /*string to append to each line */
+ const char *line_sep; /*separates lines */
+ int line_multi_new; /*split multi-line outputs? */
+ const char *line_indent; /*for extra identation if we need it*/
+
+ /*used to skip the first set of checks for line length*/
+ int skip_first;
+
+ /*flag used to hide or show the file number for obj refs*/
+ int obj_hidefileno;
+
+ /*string used to format the output for the obje refs*/
+ const char *obj_format;
+
+ /*flag used to hide or show the file number for dataset regions*/
+ int dset_hidefileno;
+
+ /*string used to format the output for the dataset regions*/
+ const char *dset_format;
+
+ const char *dset_blockformat_pre;
+ const char *dset_ptformat_pre;
+ const char *dset_ptformat;
+
+ /*print array indices in output matrix */
+ int pindex;
+
+ /*escape non printable characters */
+ int do_escape;
+
+} h5tool_format_t;
+
+typedef struct h5tools_context_t {
+ size_t cur_column; /*current column for output */
+ size_t cur_elmt; /*current element/output line */
+ int need_prefix; /*is line prefix needed? */
+ unsigned ndims; /*dimensionality */
+ hsize_t p_min_idx[H5S_MAX_RANK]; /*min selected index */
+ hsize_t p_max_idx[H5S_MAX_RANK]; /*max selected index */
+ int prev_multiline; /*was prev datum multiline? */
+ size_t prev_prefix_len; /*length of previous prefix */
+ int continuation; /*continuation of previous data?*/
+ hsize_t size_last_dim; /*the size of the last dimension,
+ *needed so we can break after each
+ *row */
+ int indent_level; /*the number of times we need some
+ *extra indentation */
+ int default_indent_level; /*this is used when the indent level gets changed */
+ hsize_t acc[H5S_MAX_RANK]; /* accumulator position */
+ hsize_t pos[H5S_MAX_RANK]; /* matrix position */
+ hsize_t sm_pos; /* current stripmine element position */
+} h5tools_context_t;
+
+typedef struct subset_d {
+ hsize_t *data;
+ unsigned int len;
+} subset_d;
+
+/* a structure to hold the subsetting particulars for a dataset */
+struct subset_t {
+ subset_d start;
+ subset_d stride;
+ subset_d count;
+ subset_d block;
+};
+
+/* The following include, h5tools_str.h, must be after the
+ * above stucts are defined. There is a dependency in the following
+ * include that hasn't been identified yet. */
+
+#include "h5tools_str.h"
+
+H5TOOLS_DLLVAR h5tool_format_t h5tools_dataformat;
+H5TOOLS_DLLVAR const h5tools_dump_header_t h5tools_standardformat;
+H5TOOLS_DLLVAR const h5tools_dump_header_t* h5tools_dump_header_format;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5TOOLS_DLLVAR int packed_bits_num; /* number of packed bits to display */
+H5TOOLS_DLLVAR int packed_data_offset; /* offset of packed bits to display */
+H5TOOLS_DLLVAR int packed_data_length; /* lengtht of packed bits to display */
+H5TOOLS_DLLVAR unsigned long long packed_data_mask; /* mask in which packed bits to display */
+H5TOOLS_DLLVAR FILE *rawattrstream; /* output stream for raw attribute data */
+H5TOOLS_DLLVAR FILE *rawdatastream; /* output stream for raw data */
+H5TOOLS_DLLVAR FILE *rawinstream; /* input stream for raw input */
+H5TOOLS_DLLVAR FILE *rawoutstream; /* output stream for raw output */
+H5TOOLS_DLLVAR FILE *rawerrorstream; /* output stream for raw error */
+H5TOOLS_DLLVAR int bin_output; /* binary output */
+H5TOOLS_DLLVAR int bin_form; /* binary form */
+H5TOOLS_DLLVAR int region_output; /* region output */
+H5TOOLS_DLLVAR int oid_output; /* oid output */
+H5TOOLS_DLLVAR int data_output; /* data output */
+H5TOOLS_DLLVAR int attr_data_output; /* attribute data output */
+
+/* Strings for output */
+#define H5_TOOLS_GROUP "GROUP"
+#define H5_TOOLS_DATASET "DATASET"
+#define H5_TOOLS_DATATYPE "DATATYPE"
+
+/* Definitions of useful routines */
+H5TOOLS_DLL void h5tools_init(void);
+H5TOOLS_DLL void h5tools_close(void);
+H5TOOLS_DLL int h5tools_set_data_output_file(const char *fname, int is_bin);
+H5TOOLS_DLL int h5tools_set_attr_output_file(const char *fname, int is_bin);
+H5TOOLS_DLL int h5tools_set_input_file(const char *fname, int is_bin);
+H5TOOLS_DLL int h5tools_set_output_file(const char *fname, int is_bin);
+H5TOOLS_DLL int h5tools_set_error_file(const char *fname, int is_bin);
+H5TOOLS_DLL hid_t h5tools_fopen(const char *fname, unsigned flags, hid_t fapl,
+ const char *driver, char *drivername, size_t drivername_len);
+H5TOOLS_DLL hid_t h5tools_get_native_type(hid_t type);
+H5TOOLS_DLL hid_t h5tools_get_little_endian_type(hid_t type);
+H5TOOLS_DLL hid_t h5tools_get_big_endian_type(hid_t type);
+H5TOOLS_DLL htri_t h5tools_detect_vlen(hid_t tid);
+H5TOOLS_DLL htri_t h5tools_detect_vlen_str(hid_t tid);
+H5TOOLS_DLL hbool_t h5tools_is_obj_same(hid_t loc_id1, const char *name1, hid_t loc_id2, const char *name2);
+H5TOOLS_DLL void init_acc_pos(h5tools_context_t *ctx, hsize_t *dims);
+H5TOOLS_DLL hbool_t h5tools_is_zero(const void *_mem, size_t size);
+H5TOOLS_DLL int h5tools_canreadf(const char* name, hid_t dcpl_id);
+H5TOOLS_DLL int h5tools_can_encode(H5Z_filter_t filtn);
+
+H5TOOLS_DLL void h5tools_simple_prefix(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx, hsize_t elmtno, int secnum);
+H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum);
+
+H5TOOLS_DLL int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t nelmts);
+H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id,
+ FILE *stream, hid_t container);
+H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id,
+ FILE *stream, hid_t container);
+
+H5TOOLS_DLL hbool_t h5tools_render_element(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx, h5tools_str_t *buffer, hsize_t *curr_pos,
+ size_t ncols, hsize_t local_elmt_counter, hsize_t elmt_counter);
+H5TOOLS_DLL hbool_t h5tools_render_region_element(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/,
+ h5tools_str_t *buffer/*string into which to render */,
+ hsize_t *curr_pos/*total data element position*/,
+ size_t ncols, hsize_t *ptdata,
+ hsize_t local_elmt_counter/*element counter*/,
+ hsize_t elmt_counter);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5TOOLS_H__ */
+
diff --git a/Resources/windows-libs/HDF5/include/h5tools_dump.h b/Resources/windows-libs/HDF5/include/h5tools_dump.h
new file mode 100644
index 0000000000000000000000000000000000000000..061a3db4037ff09751476311929063df3d8dded9
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5tools_dump.h
@@ -0,0 +1,84 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Purpose: Support h5dump functions for the various tools.
+ */
+#ifndef H5TOOLS_DUMP_H__
+#define H5TOOLS_DUMP_H__
+
+#include "h5tools_utils.h"
+
+/* 3 private values: can't be set, but can be read.
+ Note: these are defined in H5Zprivate, they are
+ duplicated here.
+ */
+#define H5_SZIP_LSB_OPTION_MASK 8
+#define H5_SZIP_MSB_OPTION_MASK 16
+#define H5_SZIP_RAW_OPTION_MASK 128
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5TOOLS_DLLVAR table_t *h5dump_type_table; /*type table reference for datatype dump */
+
+/* Definitions of useful routines */
+H5TOOLS_DLL void h5tools_dump_init(void);
+
+H5TOOLS_DLL int h5tools_dump_dset(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t dset,
+ hid_t p_typ, struct subset_t *sset);
+H5TOOLS_DLL int h5tools_dump_mem(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t obj_id,
+ hid_t type, hid_t space, void *mem);
+H5TOOLS_DLL int h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container,
+ h5tools_context_t *ctx/*in,out*/, unsigned flags,
+ hsize_t nelmts, hid_t type, void *_mem);
+H5TOOLS_DLL void h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t type);
+H5TOOLS_DLL void h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t space);
+H5TOOLS_DLL void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, const char *attr_name,
+ hid_t attr_id, int display_index, int display_char);
+H5TOOLS_DLL void h5tools_dump_oid(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t oid);
+H5TOOLS_DLL void h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id);
+H5TOOLS_DLL void h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx/*in,out*/, hid_t obj_id);
+H5TOOLS_DLL void h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
+ h5tools_context_t *ctx, hid_t obj_id,
+ int obj_data, struct subset_t *sset, int display_index, int display_char);
+
+H5TOOLS_DLL int h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer/*in,out*/,
+ const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t type, int object_search);
+H5TOOLS_DLL int h5tools_print_dataspace(h5tools_str_t *buffer/*in,out*/,
+ hid_t space);
+H5TOOLS_DLL int h5tools_print_enum(FILE *stream, h5tools_str_t *buffer/*in,out*/,
+ const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t type);
+H5TOOLS_DLL void h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/,
+ const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/,
+ hid_t dcpl, hid_t type_id, hid_t obj_id);
+H5TOOLS_DLL void h5tools_print_packed_bits(h5tools_str_t *buffer/*in,out*/, hid_t type);
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5TOOLS_DUMP_H__ */
+
diff --git a/Resources/windows-libs/HDF5/include/h5tools_ref.h b/Resources/windows-libs/HDF5/include/h5tools_ref.h
new file mode 100644
index 0000000000000000000000000000000000000000..7ddb91ae32aeefd2d05b4cb6c19f5eff0dcbb20a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5tools_ref.h
@@ -0,0 +1,38 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5TOOLS_REF_H__
+#define H5TOOLS_REF_H__
+
+#include "hdf5.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5TOOLS_DLL herr_t fill_ref_path_table(hid_t fid);
+H5TOOLS_DLL const char *lookup_ref_path(haddr_t ref);
+H5TOOLS_DLL int get_next_xid(void);
+H5TOOLS_DLL haddr_t get_fake_xid(void);
+H5TOOLS_DLL haddr_t ref_path_table_lookup(const char *);
+H5TOOLS_DLL haddr_t ref_path_table_gen_fake(const char *);
+H5TOOLS_DLL int term_ref_path_table(void);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/Resources/windows-libs/HDF5/include/h5tools_str.h b/Resources/windows-libs/HDF5/include/h5tools_str.h
new file mode 100644
index 0000000000000000000000000000000000000000..38697c6a622fca47b815ffb617331e9fec3e82e7
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5tools_str.h
@@ -0,0 +1,53 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Bill Wendling <wendling@ncsa.uiuc.edu>
+ * Monday, 19. February 2001
+ */
+#ifndef H5TOOLS_STR_H__
+#define H5TOOLS_STR_H__
+
+typedef struct h5tools_str_t {
+ char *s; /*allocate string */
+ size_t len; /*length of actual value */
+ size_t nalloc; /*allocated size of string */
+} h5tools_str_t;
+
+H5TOOLS_DLL void h5tools_str_close(h5tools_str_t *str);
+H5TOOLS_DLL size_t h5tools_str_len(h5tools_str_t *str);
+H5TOOLS_DLL char *h5tools_str_append(h5tools_str_t *str, const char *fmt, ...);
+H5TOOLS_DLL char *h5tools_str_reset(h5tools_str_t *str);
+H5TOOLS_DLL char *h5tools_str_trunc(h5tools_str_t *str, size_t size);
+H5TOOLS_DLL char *h5tools_str_fmt(h5tools_str_t *str, size_t start, const char *fmt);
+H5TOOLS_DLL char *h5tools_str_prefix(h5tools_str_t *str, const h5tool_format_t *info,
+ hsize_t elmtno, unsigned ndims, h5tools_context_t *ctx);
+/*
+ * new functions needed to display region reference data
+ */
+H5TOOLS_DLL char *h5tools_str_region_prefix(h5tools_str_t *str, const h5tool_format_t *info,
+ hsize_t elmtno, hsize_t *ptdata, unsigned ndims,
+ hsize_t max_idx[], h5tools_context_t *ctx);
+H5TOOLS_DLL void h5tools_str_dump_region_blocks(h5tools_str_t *, hid_t, const h5tool_format_t *);
+H5TOOLS_DLL void h5tools_str_dump_region_points(h5tools_str_t *, hid_t, const h5tool_format_t *);
+H5TOOLS_DLL void h5tools_str_sprint_region(h5tools_str_t *str, const h5tool_format_t *info, hid_t container,
+ void *vp);
+H5TOOLS_DLL char *h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info,
+ hid_t container, hid_t type, void *vp,
+ h5tools_context_t *ctx);
+H5TOOLS_DLL char *h5tools_str_replace ( const char *string, const char *substr,
+ const char *replacement );
+
+#endif /* H5TOOLS_STR_H__ */
diff --git a/Resources/windows-libs/HDF5/include/h5tools_utils.h b/Resources/windows-libs/HDF5/include/h5tools_utils.h
new file mode 100644
index 0000000000000000000000000000000000000000..3285278beabae8d28ef4884af9cb7a38ddcc553e
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5tools_utils.h
@@ -0,0 +1,183 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Bill Wendling <wendling@ncsa.uiuc.edu>
+ * Tuesday, 6. March 2001
+ *
+ * Purpose: Support functions for the various tools.
+ */
+#ifndef H5TOOLS_UTILS_H__
+#define H5TOOLS_UTILS_H__
+
+#include "hdf5.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* ``parallel_print'' information */
+#define PRINT_DATA_MAX_SIZE 512
+#define OUTBUFF_SIZE (PRINT_DATA_MAX_SIZE*4)
+
+H5TOOLS_DLLVAR int g_nTasks;
+H5TOOLS_DLLVAR unsigned char g_Parallel;
+H5TOOLS_DLLVAR char outBuff[];
+H5TOOLS_DLLVAR int outBuffOffset;
+H5TOOLS_DLLVAR FILE * overflow_file;
+
+/* Maximum size used in a call to malloc for a dataset */
+H5TOOLS_DLLVAR hsize_t H5TOOLS_MALLOCSIZE;
+/* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */
+H5TOOLS_DLLVAR hsize_t H5TOOLS_BUFSIZE;
+/*
+ * begin get_option section
+ */
+H5TOOLS_DLLVAR int opt_err; /* getoption prints errors if this is on */
+H5TOOLS_DLLVAR int opt_ind; /* token pointer */
+H5TOOLS_DLLVAR const char *opt_arg; /* flag argument (or value) */
+
+enum {
+ no_arg = 0, /* doesn't take an argument */
+ require_arg, /* requires an argument */
+ optional_arg /* argument is optional */
+};
+
+/*
+ * get_option determines which options are specified on the command line and
+ * returns a pointer to any arguments possibly associated with the option in
+ * the ``opt_arg'' variable. get_option returns the shortname equivalent of
+ * the option. The long options are specified in the following way:
+ *
+ * struct long_options foo[] = {
+ * { "filename", require_arg, 'f' },
+ * { "append", no_arg, 'a' },
+ * { "width", require_arg, 'w' },
+ * { NULL, 0, 0 }
+ * };
+ *
+ * Long named options can have arguments specified as either:
+ *
+ * ``--param=arg'' or ``--param arg''
+ *
+ * Short named options can have arguments specified as either:
+ *
+ * ``-w80'' or ``-w 80''
+ *
+ * and can have more than one short named option specified at one time:
+ *
+ * -aw80
+ *
+ * in which case those options which expect an argument need to come at the
+ * end.
+ */
+typedef struct long_options {
+ const char *name; /* name of the long option */
+ int has_arg; /* whether we should look for an arg */
+ char shortval; /* the shortname equivalent of long arg
+ * this gets returned from get_option */
+} long_options;
+
+H5TOOLS_DLL int get_option(int argc, const char **argv, const char *opt,
+ const struct long_options *l_opt);
+/*
+ * end get_option section
+ */
+
+/*struct taken from the dumper. needed in table struct*/
+typedef struct obj_t {
+ haddr_t objno;
+ char *objname;
+ hbool_t displayed; /* Flag to indicate that the object has been displayed */
+ hbool_t recorded; /* Flag for named datatypes to indicate they were found in the group hierarchy */
+} obj_t;
+
+/*struct for the tables that the find_objs function uses*/
+typedef struct table_t {
+ size_t size;
+ size_t nobjs;
+ obj_t *objs;
+} table_t;
+
+/*this struct stores the information that is passed to the find_objs function*/
+typedef struct find_objs_t {
+ hid_t fid;
+ table_t *group_table;
+ table_t *type_table;
+ table_t *dset_table;
+} find_objs_t;
+
+H5TOOLS_DLLVAR int h5tools_nCols; /*max number of columns for outputting */
+
+/* Definitions of useful routines */
+H5TOOLS_DLL void indentation(int);
+H5TOOLS_DLL void print_version(const char *progname);
+H5TOOLS_DLL void parallel_print(const char* format, ... );
+H5TOOLS_DLL void error_msg(const char *fmt, ...);
+H5TOOLS_DLL void warn_msg(const char *fmt, ...);
+H5TOOLS_DLL void help_ref_msg(FILE *output);
+H5TOOLS_DLL void free_table(table_t *table);
+#ifdef H5DUMP_DEBUG
+H5TOOLS_DLL void dump_tables(find_objs_t *info)
+#endif /* H5DUMP_DEBUG */
+H5TOOLS_DLL herr_t init_objs(hid_t fid, find_objs_t *info, table_t **group_table,
+ table_t **dset_table, table_t **type_table);
+H5TOOLS_DLL obj_t *search_obj(table_t *temp, haddr_t objno);
+#ifndef H5_HAVE_TMPFILE
+H5TOOLS_DLL FILE * tmpfile(void);
+#endif
+
+/*************************************************************
+ *
+ * candidate functions to be public
+ *
+ *************************************************************/
+
+/* This code is layout for common code among tools */
+typedef enum toolname_t {
+ TOOL_H5DIFF, TOOL_H5LS, TOOL__H5DUMP /* add as necessary */
+} h5tool_toolname_t;
+
+/* this struct can be used to differntiate among tools */
+typedef struct {
+ h5tool_toolname_t toolname;
+ int msg_mode;
+} h5tool_opt_t;
+
+/* obtain link info from H5tools_get_symlink_info() */
+typedef struct {
+ H5O_type_t trg_type; /* OUT: target type */
+ char *trg_path; /* OUT: target obj path. This must be freed
+ * when used with H5tools_get_symlink_info() */
+ haddr_t objno; /* OUT: target object address */
+ unsigned long fileno; /* OUT: File number that target object is located in */
+ H5L_info_t linfo; /* OUT: link info */
+ h5tool_opt_t opt; /* IN: options */
+} h5tool_link_info_t;
+
+
+/* Definitions of routines */
+H5TOOLS_DLL int H5tools_get_symlink_info(hid_t file_id, const char * linkpath,
+ h5tool_link_info_t *link_info, hbool_t get_obj_type);
+H5TOOLS_DLL const char *h5tools_getprogname(void);
+H5TOOLS_DLL void h5tools_setprogname(const char*progname);
+H5TOOLS_DLL int h5tools_getstatus(void);
+H5TOOLS_DLL void h5tools_setstatus(int d_status);
+H5TOOLS_DLL int h5tools_getenv_update_hyperslab_bufsize(void);
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5TOOLS_UTILS_H__ */
diff --git a/Resources/windows-libs/HDF5/include/h5trav.h b/Resources/windows-libs/HDF5/include/h5trav.h
new file mode 100644
index 0000000000000000000000000000000000000000..352a9e537737635b73dd9533bca5f6d13c1e7aec
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/h5trav.h
@@ -0,0 +1,199 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef H5TRAV_H__
+#define H5TRAV_H__
+
+#include "hdf5.h"
+
+/* Typedefs for visiting objects */
+typedef herr_t (*h5trav_obj_func_t)(const char *path_name, const H5O_info_t *oinfo,
+ const char *first_seen, void *udata);
+typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info_t *linfo,
+ void *udata);
+
+/*-------------------------------------------------------------------------
+ * public enum to specify type of an object
+ * the TYPE can be:
+ * H5TRAV_TYPE_UNKNOWN = -1,
+ * H5TRAV_TYPE_GROUP, Object is a group
+ * H5TRAV_TYPE_DATASET, Object is a dataset
+ * H5TRAV_TYPE_TYPE, Object is a named datatype
+ * H5TRAV_TYPE_LINK, Object is a symbolic link
+ * H5TRAV_TYPE_UDLINK, Object is a user-defined link
+ *-------------------------------------------------------------------------
+ */
+typedef enum {
+ H5TRAV_TYPE_UNKNOWN = -1, /* Unknown object type */
+ H5TRAV_TYPE_GROUP, /* Object is a group */
+ H5TRAV_TYPE_DATASET, /* Object is a dataset */
+ H5TRAV_TYPE_NAMED_DATATYPE, /* Object is a named datatype */
+ H5TRAV_TYPE_LINK, /* Object is a symbolic link */
+ H5TRAV_TYPE_UDLINK /* Object is a user-defined link */
+} h5trav_type_t;
+
+/*-------------------------------------------------------------------------
+ * public struct to store name and type of an object
+ *-------------------------------------------------------------------------
+ */
+/* Struct to keep track of symbolic link targets visited.
+ * Functions: symlink_visit_add() and symlink_is_visited()
+ */
+typedef struct symlink_trav_path_t {
+ H5L_type_t type;
+ char *file;
+ char *path;
+} symlink_trav_path_t;
+
+typedef struct symlink_trav_t {
+ size_t nalloc;
+ size_t nused;
+ symlink_trav_path_t *objs;
+ hbool_t dangle_link;
+} symlink_trav_t;
+
+typedef struct trav_path_t {
+ char *path;
+ h5trav_type_t type;
+ haddr_t objno; /* object address */
+ unsigned long fileno; /* File number that object is located in */
+} trav_path_t;
+
+typedef struct trav_info_t {
+ size_t nalloc;
+ size_t nused;
+ const char *fname;
+ hid_t fid; /* File ID */
+ trav_path_t *paths;
+ symlink_trav_t symlink_visited; /* already visited symbolic links */
+ void * opts; /* optional data passing */
+} trav_info_t;
+
+
+/*-------------------------------------------------------------------------
+ * keep record of hard link information
+ *-------------------------------------------------------------------------
+ */
+typedef struct trav_link_t {
+ char *new_name;
+} trav_link_t;
+
+
+/*-------------------------------------------------------------------------
+ * struct to store basic info needed for the h5trav table traversal algorythm
+ *-------------------------------------------------------------------------
+ */
+
+typedef struct trav_obj_t {
+ haddr_t objno; /* object address */
+ unsigned flags[2]; /* h5diff.object is present or not in both files*/
+ hbool_t is_same_trgobj; /* same target object? no need to compare */
+ char *name; /* name */
+ h5trav_type_t type; /* type of object */
+ trav_link_t *links; /* array of possible link names */
+ size_t sizelinks; /* size of links array */
+ size_t nlinks; /* number of links */
+} trav_obj_t;
+
+
+/*-------------------------------------------------------------------------
+ * private struct that stores all objects
+ *-------------------------------------------------------------------------
+ */
+
+typedef struct trav_table_t {
+ size_t size;
+ size_t nobjs;
+ trav_obj_t *objs;
+} trav_table_t;
+
+
+/*-------------------------------------------------------------------------
+ * public functions
+ *-------------------------------------------------------------------------
+ */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ * "h5trav general" public functions
+ *-------------------------------------------------------------------------
+ */
+H5TOOLS_DLL void h5trav_set_index(H5_index_t print_index_by, H5_iter_order_t print_index_order);
+H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name,
+ hbool_t visit_start, hbool_t recurse, h5trav_obj_func_t visit_obj,
+ h5trav_lnk_func_t visit_lnk, void *udata);
+H5TOOLS_DLL herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path);
+H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path);
+
+/*-------------------------------------------------------------------------
+ * "h5trav info" public functions
+ *-------------------------------------------------------------------------
+ */
+H5TOOLS_DLL int h5trav_getinfo(hid_t file_id, trav_info_t *info);
+H5TOOLS_DLL ssize_t h5trav_getindex(const trav_info_t *info, const char *obj);
+H5TOOLS_DLL int trav_info_visit_obj (const char *path, const H5O_info_t *oinfo, const char *already_visited, void *udata);
+H5TOOLS_DLL int trav_info_visit_lnk (const char *path, const H5L_info_t *linfo, void *udata);
+
+/*-------------------------------------------------------------------------
+ * "h5trav table" public functions
+ *-------------------------------------------------------------------------
+ */
+
+H5TOOLS_DLL int h5trav_gettable(hid_t fid, trav_table_t *travt);
+H5TOOLS_DLL int h5trav_getindext(const char *obj, const trav_table_t *travt);
+
+/*-------------------------------------------------------------------------
+ * "h5trav print" public functions
+ *-------------------------------------------------------------------------
+ */
+H5TOOLS_DLL int h5trav_print(hid_t fid);
+H5TOOLS_DLL void h5trav_set_verbose(int print_verbose);
+
+#ifdef __cplusplus
+}
+#endif
+
+/*-------------------------------------------------------------------------
+ * info private functions
+ *-------------------------------------------------------------------------
+ */
+
+H5TOOLS_DLL void trav_info_init(const char *filename, hid_t fileid, trav_info_t **info);
+
+H5TOOLS_DLL void trav_info_free(trav_info_t *info);
+
+H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type);
+
+H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id);
+
+/*-------------------------------------------------------------------------
+ * table private functions
+ *-------------------------------------------------------------------------
+ */
+
+H5TOOLS_DLL void trav_table_init(trav_table_t **table);
+
+H5TOOLS_DLL void trav_table_free(trav_table_t *table);
+
+H5TOOLS_DLL void trav_table_addflags(unsigned *flags,
+ char *objname,
+ h5trav_type_t type,
+ trav_table_t *table);
+
+#endif /* H5TRAV_H__ */
+
diff --git a/Resources/windows-libs/HDF5/include/h5z.mod b/Resources/windows-libs/HDF5/include/h5z.mod
new file mode 100644
index 0000000000000000000000000000000000000000..0a2e2be019978a16677086453c22782e10c3c80c
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/h5z.mod differ
diff --git a/Resources/windows-libs/HDF5/include/hdf5.h b/Resources/windows-libs/HDF5/include/hdf5.h
new file mode 100644
index 0000000000000000000000000000000000000000..ef150630f5f6fa8982267b531b9bbaab57104acd
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/hdf5.h
@@ -0,0 +1,55 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This is the main public HDF5 include file. Put further information in
+ * a particular header file and include that here, don't fill this file with
+ * lots of gunk...
+ */
+#ifndef _HDF5_H
+#define _HDF5_H
+
+#include "H5public.h"
+#include "H5Apublic.h" /* Attributes */
+#include "H5ACpublic.h" /* Metadata cache */
+#include "H5Dpublic.h" /* Datasets */
+#include "H5Epublic.h" /* Errors */
+#include "H5Fpublic.h" /* Files */
+#include "H5FDpublic.h" /* File drivers */
+#include "H5Gpublic.h" /* Groups */
+#include "H5Ipublic.h" /* ID management */
+#include "H5Lpublic.h" /* Links */
+#include "H5MMpublic.h" /* Memory management */
+#include "H5Opublic.h" /* Object headers */
+#include "H5Ppublic.h" /* Property lists */
+#include "H5Rpublic.h" /* References */
+#include "H5Spublic.h" /* Dataspaces */
+#include "H5Tpublic.h" /* Datatypes */
+#include "H5Zpublic.h" /* Data filters */
+
+/* Predefined file drivers */
+#include "H5FDcore.h" /* Files stored entirely in memory */
+#include "H5FDfamily.h" /* File families */
+#include "H5FDlog.h" /* sec2 driver with I/O logging (for debugging) */
+#include "H5FDmpi.h" /* MPI-based file drivers */
+#include "H5FDmulti.h" /* Usage-partitioned file family */
+#include "H5FDsec2.h" /* POSIX unbuffered file I/O */
+#include "H5FDstdio.h" /* Standard C buffered I/O */
+#ifdef H5_HAVE_WINDOWS
+#include "H5FDwindows.h" /* Windows buffered I/O */
+#endif
+#include "H5FDdirect.h" /* Linux direct I/O */
+
+#endif
diff --git a/Resources/windows-libs/HDF5/include/hdf5.mod b/Resources/windows-libs/HDF5/include/hdf5.mod
new file mode 100644
index 0000000000000000000000000000000000000000..9c084d066732f27deb19f9dd5825c02aebbd9f3f
Binary files /dev/null and b/Resources/windows-libs/HDF5/include/hdf5.mod differ
diff --git a/Resources/windows-libs/HDF5/include/hdf5_hl.h b/Resources/windows-libs/HDF5/include/hdf5_hl.h
new file mode 100644
index 0000000000000000000000000000000000000000..46439324e1c2b7b9ff7bd5d4bae3473bc032bbc5
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/hdf5_hl.h
@@ -0,0 +1,33 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This is the main public HDF5 High Level include file. Put further
+ * information in a particular header file and include that here, don't
+ * fill this file with lots of gunk...
+ */
+
+#ifndef _HDF5_HL_H
+#define _HDF5_HL_H
+
+#include "H5DOpublic.h" /* dataset optimization */
+#include "H5DSpublic.h" /* dimension scales */
+#include "H5LTpublic.h" /* lite */
+#include "H5IMpublic.h" /* image */
+#include "H5TBpublic.h" /* table */
+#include "H5PTpublic.h" /* table */
+
+#endif /*H5_INCLUDE_HL*/
+
diff --git a/Resources/windows-libs/HDF5/include/ricehdf.h b/Resources/windows-libs/HDF5/include/ricehdf.h
new file mode 100644
index 0000000000000000000000000000000000000000..c1be7a20fa4b1790cd7f64467f854f64de8a6b68
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/ricehdf.h
@@ -0,0 +1,86 @@
+/*==============================================================================
+The SZIP Science Data Lossless Compression Program is Copyright (C) 2001 Science
+& Technology Corporation @ UNM. All rights released. Copyright (C) 2003 Lowell
+H. Miles and Jack A. Venbrux. Licensed to ICs Corp. for distribution by the
+University of Illinois' National Center for Supercomputing Applications as a
+part of the HDF data storage and retrieval file format and software library
+products package. All rights reserved. Do not modify or use for other
+purposes.
+
+SZIP implements an extended Rice adaptive lossless compression algorithm
+for sample data. The primary algorithm was developed by R. F. Rice at
+Jet Propulsion Laboratory.
+
+SZIP embodies certain inventions patented by the National Aeronautics &
+Space Administration. United States Patent Nos. 5,448,642, 5,687,255,
+and 5,822,457 have been licensed to ICs Corp. for distribution with the
+HDF data storage and retrieval file format and software library products.
+All rights reserved.
+
+Revocable (in the event of breach by the user or if required by law),
+royalty-free, nonexclusive sublicense to use SZIP decompression software
+routines and underlying patents is hereby granted by ICs Corp. to all users
+of and in conjunction with HDF data storage and retrieval file format and
+software library products.
+
+Revocable (in the event of breach by the user or if required by law),
+royalty-free, nonexclusive sublicense to use SZIP compression software
+routines and underlying patents for non-commercial, scientific use only
+is hereby granted by ICs Corp. to users of and in conjunction with HDF
+data storage and retrieval file format and software library products.
+
+For commercial use license to SZIP compression software routines and underlying
+patents please contact ICs Corp. at ICs Corp., 721 Lochsa Street, Suite 8,
+Post Falls, ID 83854. (208) 262-2008.
+
+==============================================================================*/
+/********************************************************/
+/* defines and declarations to interface to the szip */
+/* functions in file rice.c. */
+/* USE EXTREME CARE WHEN MODIFYING THIS FILE */
+/********************************************************/
+extern int szip_allow_encoding;
+
+#define SZ_ALLOW_K13_OPTION_MASK 1
+#define SZ_CHIP_OPTION_MASK 2
+#define SZ_EC_OPTION_MASK 4
+#define SZ_LSB_OPTION_MASK 8
+#define SZ_MSB_OPTION_MASK 16
+#define SZ_NN_OPTION_MASK 32
+#define SZ_RAW_OPTION_MASK 128
+
+#define SZ_STREAM_ERROR (-1)
+#define SZ_MEM_ERROR (-2)
+#define SZ_INIT_ERROR (-3)
+#define SZ_PARAM_ERROR (-4)
+#define SZ_NO_ENCODER_ERROR (-5)
+
+#define SZ_MAX_BLOCKS_PER_SCANLINE 128
+#define SZ_MAX_PIXELS_PER_BLOCK 32
+#define SZ_MAX_PIXELS_PER_SCANLINE (SZ_MAX_BLOCKS_PER_SCANLINE)*(SZ_MAX_PIXELS_PER_BLOCK)
+
+long szip_compress_memory(
+ int options_mask,
+ int bits_per_pixel,
+ int pixels_per_block,
+ int pixels_per_scanline,
+ const void *in,
+ long pixels,
+ char *out);
+
+long szip_uncompress_memory(
+ int new_options_mask,
+ int new_bits_per_pixel,
+ int new_pixels_per_block,
+ int new_pixels_per_scanline,
+ const char *in,
+ long in_bytes,
+ void *out,
+ long out_pixels);
+
+int szip_check_params(
+ int bits_per_pixel,
+ int pixels_per_block,
+ int pixels_per_scanline,
+ long image_pixels,
+ char **msg);
diff --git a/Resources/windows-libs/HDF5/include/szip_adpt.h b/Resources/windows-libs/HDF5/include/szip_adpt.h
new file mode 100644
index 0000000000000000000000000000000000000000..2e5a5177ac4b8232eb851bbfed0107789dc14350
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/szip_adpt.h
@@ -0,0 +1,56 @@
+/*
+ * This files has neccesary definitions to provide SZIP DLL
+ * support on Windows platfroms, both MSVC and CodeWarrior
+ * compilers
+ */
+
+#ifndef SZAPI_ADPT_H
+#define SZAPI_ADPT_H
+
+/* This will only be defined if szip was built with CMake shared libs*/
+#ifdef SZ_BUILT_AS_DYNAMIC_LIB
+
+#if defined (szip_EXPORTS)
+ #define _SZDLL_
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define __SZ_DLL__ __declspec(dllexport)
+/* #define __DLLVARH425__ __declspec(dllexport)*/
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define __SZ_DLL__ __attribute__ ((visibility("default")))
+/* #define __DLLVARH425__ extern __attribute__ ((visibility("default"))) */
+ #endif
+#else
+ #define _SZUSEDLL_
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define __SZ_DLL__ __declspec(dllimport)
+/* #define __DLLVARH425__ __declspec(dllimport)*/
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define __SZ_DLL__ __attribute__ ((visibility("default")))
+/* #define __DLLVARH425__ extern __attribute__ ((visibility("default"))) */
+ #endif
+#endif
+
+#else /* SZ_BUILT_AS_DYNAMIC_LIB */
+/* This is the original HDFGroup defined preprocessor code */
+
+#if defined(WIN32) && !defined(__MWERKS__)
+#if defined(_SZDLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define __SZ_DLL__ __declspec(dllexport)
+/*#define __DLLVARH425__ __declspec(dllexport)*/
+#elif defined(_SZUSEDLL_)
+#define __SZ_DLL__ __declspec(dllimport)
+/*#define __DLLVARH425__ __declspec(dllimport)*/
+#else
+#define __SZ_DLL__
+/*#define __DLLVARH425__ extern*/
+#endif /* _SZDLL_ */
+
+#else /*WIN32*/
+#define __SZ_DLL__ extern
+/*#define __DLLVAR__ extern*/
+#endif
+
+#endif /* SZ_BUILT_AS_DYNAMIC_LIB */
+
+#endif /* H5API_ADPT_H */
diff --git a/Resources/windows-libs/HDF5/include/szlib.h b/Resources/windows-libs/HDF5/include/szlib.h
new file mode 100644
index 0000000000000000000000000000000000000000..efd7cd00ca89c036aecf0d4563b8807b95758f0c
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/szlib.h
@@ -0,0 +1,152 @@
+/* szlib.h -- defines, typedefs, and data structures for szlib API functions. */
+
+/*==============================================================================
+The SZIP Science Data Lossless Compression Program is Copyright (C) 2001 Science
+& Technology Corporation @ UNM. All rights released. Copyright (C) 2003 Lowell
+H. Miles and Jack A. Venbrux. Licensed to ICs Corp. for distribution by the
+University of Illinois' National Center for Supercomputing Applications as a
+part of the HDF data storage and retrieval file format and software library
+products package. All rights reserved. Do not modify or use for other
+purposes.
+
+SZIP implements an extended Rice adaptive lossless compression algorithm
+for sample data. The primary algorithm was developed by R. F. Rice at
+Jet Propulsion Laboratory.
+
+SZIP embodies certain inventions patented by the National Aeronautics &
+Space Administration. United States Patent Nos. 5,448,642, 5,687,255,
+and 5,822,457 have been licensed to ICs Corp. for distribution with the
+HDF data storage and retrieval file format and software library products.
+All rights reserved.
+
+Revocable (in the event of breach by the user or if required by law),
+royalty-free, nonexclusive sublicense to use SZIP decompression software
+routines and underlying patents is hereby granted by ICs Corp. to all users
+of and in conjunction with HDF data storage and retrieval file format and
+software library products.
+
+Revocable (in the event of breach by the user or if required by law),
+royalty-free, nonexclusive sublicense to use SZIP compression software
+routines and underlying patents for non-commercial, scientific use only
+is hereby granted by ICs Corp. to users of and in conjunction with HDF
+data storage and retrieval file format and software library products.
+
+For commercial use license to SZIP compression software routines and underlying
+patents please contact ICs Corp. at ICs Corp., 721 Lochsa Street, Suite 8,
+Post Falls, ID 83854. (208) 262-2008.
+
+==============================================================================*/
+#ifndef _SZLIB_H
+#define _SZLIB_H
+
+#include "ricehdf.h"
+#include "szip_adpt.h"
+
+#define SZLIB_VERSION "2.1"
+
+/*
+ The application must update next_in and avail_in when avail_in has
+ dropped to zero. It must update next_out and avail_out when avail_out
+ has dropped to zero. The application must initialize zalloc, zfree and
+ opaque before calling the init function. All other fields are set by the
+ compression library and must not be updated by the application.
+
+ The fields total_in and total_out can be used for statistics or
+ progress reports. After compression, total_in holds the total size of
+ the uncompressed data and may be saved for use in the decompressor
+ (particularly if the decompressor wants to decompress everything in
+ a single step).
+*/
+
+#define SZ_NULL 0
+
+/*** API flush values ***/
+#define SZ_NO_FLUSH 0
+#define SZ_FINISH 4
+
+/*** API state values ***/
+#define SZ_INPUT_IMAGE 5
+#define SZ_OUTPUT_IMAGE 6
+
+/*** API return values ***/
+#define SZ_OK 0
+#define SZ_STREAM_END 1
+#define SZ_OUTBUFF_FULL 2
+
+/*** API error values defined in ricehdf.h ***/
+/* SZ_STREAM_ERROR */
+/* SZ_MEM_ERROR */
+/* SZ_INIT_ERROR */
+/* SZ_PARAM_ERROR */
+/* SZ_NO_ENCODER_ERROR */
+
+/*** API options_mask values defined in ricehdf.h ***/
+/* SZ_ALLOW_K13_OPTION_MASK */
+/* SZ_CHIP_OPTION_MASK */
+/* SZ_EC_OPTION_MASK */
+/* SZ_LSB_OPTION_MASK */
+/* SZ_MSB_OPTION_MASK */
+/* SZ_NN_OPTION_MASK */
+/* SZ_RAW_OPTION_MASK */
+
+/*** API MAX limits defined in ricehdf.h ***/
+/* SZ_MAX_BLOCKS_PER_SCANLINE */
+/* SZ_MAX_PIXELS_PER_BLOCK */
+/* SZ_MAX_PIXELS_PER_SCANLINE */
+
+typedef struct sz_hidden_data_s
+ {
+ char *image_in;
+ long avail_in;
+ char *next_in;
+
+ char *image_out;
+ long avail_out;
+ char *next_out;
+ } sz_hidden_data;
+
+typedef struct sz_stream_s
+ {
+ char *next_in; /* next input byte */
+ unsigned int avail_in; /* number of bytes available at next_in */
+ unsigned long total_in; /* total nb of input bytes read so far */
+
+ char *next_out; /* next output byte should be put there */
+ unsigned int avail_out; /* remaining free space at next_out */
+ unsigned long total_out; /* total nb of bytes output so far */
+
+ char *msg;
+ int state;
+
+ void *hidden; /* this data hidden from user */
+
+ int options_mask;
+ int bits_per_pixel;
+ int pixels_per_block;
+ int pixels_per_scanline;
+ long image_pixels;
+ } sz_stream;
+
+typedef sz_stream *sz_streamp;
+
+typedef struct SZ_com_t_s
+ {
+ int options_mask;
+ int bits_per_pixel;
+ int pixels_per_block;
+ int pixels_per_scanline;
+ } SZ_com_t;
+
+__SZ_DLL__ int SZ_BufftoBuffCompress(void *dest, size_t *destLen, const void *source, size_t sourceLen, SZ_com_t *param);
+__SZ_DLL__ int SZ_BufftoBuffDecompress(void *dest, size_t *destLen, const void *source, size_t sourceLen, SZ_com_t *param);
+
+__SZ_DLL__ int SZ_DecompressInit(sz_stream *strm);
+__SZ_DLL__ int SZ_Decompress(sz_stream *strm, int flush);
+__SZ_DLL__ int SZ_DecompressEnd(sz_stream *strm);
+
+__SZ_DLL__ int SZ_CompressInit(sz_stream *strm);
+__SZ_DLL__ int SZ_Compress(sz_stream *strm, int flush);
+__SZ_DLL__ int SZ_CompressEnd(sz_stream *strm);
+__SZ_DLL__ int SZ_encoder_enabled(void);
+
+#endif /* _SZLIB_H */
diff --git a/Resources/windows-libs/HDF5/include/zconf.h b/Resources/windows-libs/HDF5/include/zconf.h
new file mode 100644
index 0000000000000000000000000000000000000000..f542ce7a7e0a4ced91102ad7175e5bd6e8cb9947
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/zconf.h
@@ -0,0 +1,513 @@
+/* zconf.h -- configuration of the zlib compression library
+ * Copyright (C) 1995-2013 Jean-loup Gailly.
+ * For conditions of distribution and use, see copyright notice in zlib.h
+ */
+
+/* @(#) $Id$ */
+
+#ifndef ZCONF_H
+#define ZCONF_H
+/* #undef Z_PREFIX */
+/* #undef Z_HAVE_UNISTD_H */
+
+/*
+ * If you *really* need a unique prefix for all types and library functions,
+ * compile with -DZ_PREFIX. The "standard" zlib should be compiled without it.
+ * Even better than compiling with -DZ_PREFIX would be to use configure to set
+ * this permanently in zconf.h using "./configure --zprefix".
+ */
+#ifdef Z_PREFIX /* may be set to #if 1 by ./configure */
+# cmakedefine Z_PREFIX_SET
+
+/* all linked symbols */
+# define _dist_code z__dist_code
+# define _length_code z__length_code
+# define _tr_align z__tr_align
+# define _tr_flush_bits z__tr_flush_bits
+# define _tr_flush_block z__tr_flush_block
+# define _tr_init z__tr_init
+# define _tr_stored_block z__tr_stored_block
+# define _tr_tally z__tr_tally
+# define adler32 z_adler32
+# define adler32_combine z_adler32_combine
+# define adler32_combine64 z_adler32_combine64
+# ifndef Z_SOLO
+# define compress z_compress
+# define compress2 z_compress2
+# define compressBound z_compressBound
+# endif
+# define crc32 z_crc32
+# define crc32_combine z_crc32_combine
+# define crc32_combine64 z_crc32_combine64
+# define deflate z_deflate
+# define deflateBound z_deflateBound
+# define deflateCopy z_deflateCopy
+# define deflateEnd z_deflateEnd
+# define deflateInit2_ z_deflateInit2_
+# define deflateInit_ z_deflateInit_
+# define deflateParams z_deflateParams
+# define deflatePending z_deflatePending
+# define deflatePrime z_deflatePrime
+# define deflateReset z_deflateReset
+# define deflateResetKeep z_deflateResetKeep
+# define deflateSetDictionary z_deflateSetDictionary
+# define deflateSetHeader z_deflateSetHeader
+# define deflateTune z_deflateTune
+# define deflate_copyright z_deflate_copyright
+# define get_crc_table z_get_crc_table
+# ifndef Z_SOLO
+# define gz_error z_gz_error
+# define gz_intmax z_gz_intmax
+# define gz_strwinerror z_gz_strwinerror
+# define gzbuffer z_gzbuffer
+# define gzclearerr z_gzclearerr
+# define gzclose z_gzclose
+# define gzclose_r z_gzclose_r
+# define gzclose_w z_gzclose_w
+# define gzdirect z_gzdirect
+# define gzdopen z_gzdopen
+# define gzeof z_gzeof
+# define gzerror z_gzerror
+# define gzflush z_gzflush
+# define gzgetc z_gzgetc
+# define gzgetc_ z_gzgetc_
+# define gzgets z_gzgets
+# define gzoffset z_gzoffset
+# define gzoffset64 z_gzoffset64
+# define gzopen z_gzopen
+# define gzopen64 z_gzopen64
+# ifdef _WIN32
+# define gzopen_w z_gzopen_w
+# endif
+# define gzprintf z_gzprintf
+# define gzvprintf z_gzvprintf
+# define gzputc z_gzputc
+# define gzputs z_gzputs
+# define gzread z_gzread
+# define gzrewind z_gzrewind
+# define gzseek z_gzseek
+# define gzseek64 z_gzseek64
+# define gzsetparams z_gzsetparams
+# define gztell z_gztell
+# define gztell64 z_gztell64
+# define gzungetc z_gzungetc
+# define gzwrite z_gzwrite
+# endif
+# define inflate z_inflate
+# define inflateBack z_inflateBack
+# define inflateBackEnd z_inflateBackEnd
+# define inflateBackInit_ z_inflateBackInit_
+# define inflateCopy z_inflateCopy
+# define inflateEnd z_inflateEnd
+# define inflateGetHeader z_inflateGetHeader
+# define inflateInit2_ z_inflateInit2_
+# define inflateInit_ z_inflateInit_
+# define inflateMark z_inflateMark
+# define inflatePrime z_inflatePrime
+# define inflateReset z_inflateReset
+# define inflateReset2 z_inflateReset2
+# define inflateSetDictionary z_inflateSetDictionary
+# define inflateGetDictionary z_inflateGetDictionary
+# define inflateSync z_inflateSync
+# define inflateSyncPoint z_inflateSyncPoint
+# define inflateUndermine z_inflateUndermine
+# define inflateResetKeep z_inflateResetKeep
+# define inflate_copyright z_inflate_copyright
+# define inflate_fast z_inflate_fast
+# define inflate_table z_inflate_table
+# ifndef Z_SOLO
+# define uncompress z_uncompress
+# endif
+# define zError z_zError
+# ifndef Z_SOLO
+# define zcalloc z_zcalloc
+# define zcfree z_zcfree
+# endif
+# define zlibCompileFlags z_zlibCompileFlags
+# define zlibVersion z_zlibVersion
+
+/* all zlib typedefs in zlib.h and zconf.h */
+# define Byte z_Byte
+# define Bytef z_Bytef
+# define alloc_func z_alloc_func
+# define charf z_charf
+# define free_func z_free_func
+# ifndef Z_SOLO
+# define gzFile z_gzFile
+# endif
+# define gz_header z_gz_header
+# define gz_headerp z_gz_headerp
+# define in_func z_in_func
+# define intf z_intf
+# define out_func z_out_func
+# define uInt z_uInt
+# define uIntf z_uIntf
+# define uLong z_uLong
+# define uLongf z_uLongf
+# define voidp z_voidp
+# define voidpc z_voidpc
+# define voidpf z_voidpf
+
+/* all zlib structs in zlib.h and zconf.h */
+# define gz_header_s z_gz_header_s
+# define internal_state z_internal_state
+
+#endif
+
+#if defined(__MSDOS__) && !defined(MSDOS)
+# define MSDOS
+#endif
+#if (defined(OS_2) || defined(__OS2__)) && !defined(OS2)
+# define OS2
+#endif
+#if defined(_WINDOWS) && !defined(WINDOWS)
+# define WINDOWS
+#endif
+#if defined(_WIN32) || defined(_WIN32_WCE) || defined(__WIN32__)
+# ifndef WIN32
+# define WIN32
+# endif
+#endif
+#if (defined(MSDOS) || defined(OS2) || defined(WINDOWS)) && !defined(WIN32)
+# if !defined(__GNUC__) && !defined(__FLAT__) && !defined(__386__)
+# ifndef SYS16BIT
+# define SYS16BIT
+# endif
+# endif
+#endif
+
+/*
+ * Compile with -DMAXSEG_64K if the alloc function cannot allocate more
+ * than 64k bytes at a time (needed on systems with 16-bit int).
+ */
+#ifdef SYS16BIT
+# define MAXSEG_64K
+#endif
+#ifdef MSDOS
+# define UNALIGNED_OK
+#endif
+
+#ifdef __STDC_VERSION__
+# ifndef STDC
+# define STDC
+# endif
+# if __STDC_VERSION__ >= 199901L
+# ifndef STDC99
+# define STDC99
+# endif
+# endif
+#endif
+#if !defined(STDC) && (defined(__STDC__) || defined(__cplusplus))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(__GNUC__) || defined(__BORLANDC__))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(MSDOS) || defined(WINDOWS) || defined(WIN32))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(OS2) || defined(__HOS_AIX__))
+# define STDC
+#endif
+
+#if defined(__OS400__) && !defined(STDC) /* iSeries (formerly AS/400). */
+# define STDC
+#endif
+
+#ifndef STDC
+# ifndef const /* cannot use !defined(STDC) && !defined(const) on Mac */
+# define const /* note: need a more gentle solution here */
+# endif
+#endif
+
+#if defined(ZLIB_CONST) && !defined(z_const)
+# define z_const const
+#else
+# define z_const
+#endif
+
+/* Some Mac compilers merge all .h files incorrectly: */
+#if defined(__MWERKS__)||defined(applec)||defined(THINK_C)||defined(__SC__)
+# define NO_DUMMY_DECL
+#endif
+
+/* Maximum value for memLevel in deflateInit2 */
+#ifndef MAX_MEM_LEVEL
+# ifdef MAXSEG_64K
+# define MAX_MEM_LEVEL 8
+# else
+# define MAX_MEM_LEVEL 9
+# endif
+#endif
+
+/* Maximum value for windowBits in deflateInit2 and inflateInit2.
+ * WARNING: reducing MAX_WBITS makes minigzip unable to extract .gz files
+ * created by gzip. (Files created by minigzip can still be extracted by
+ * gzip.)
+ */
+#ifndef MAX_WBITS
+# define MAX_WBITS 15 /* 32K LZ77 window */
+#endif
+
+/* The memory requirements for deflate are (in bytes):
+ (1 << (windowBits+2)) + (1 << (memLevel+9))
+ that is: 128K for windowBits=15 + 128K for memLevel = 8 (default values)
+ plus a few kilobytes for small objects. For example, if you want to reduce
+ the default memory requirements from 256K to 128K, compile with
+ make CFLAGS="-O -DMAX_WBITS=14 -DMAX_MEM_LEVEL=7"
+ Of course this will generally degrade compression (there's no free lunch).
+
+ The memory requirements for inflate are (in bytes) 1 << windowBits
+ that is, 32K for windowBits=15 (default value) plus a few kilobytes
+ for small objects.
+*/
+
+ /* Type declarations */
+
+#ifndef OF /* function prototypes */
+# ifdef STDC
+# define OF(args) args
+# else
+# define OF(args) ()
+# endif
+#endif
+
+#ifndef Z_ARG /* function prototypes for stdarg */
+# if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# define Z_ARG(args) args
+# else
+# define Z_ARG(args) ()
+# endif
+#endif
+
+/* The following definitions for FAR are needed only for MSDOS mixed
+ * model programming (small or medium model with some far allocations).
+ * This was tested only with MSC; for other MSDOS compilers you may have
+ * to define NO_MEMCPY in zutil.h. If you don't need the mixed model,
+ * just define FAR to be empty.
+ */
+#ifdef SYS16BIT
+# if defined(M_I86SM) || defined(M_I86MM)
+ /* MSC small or medium model */
+# define SMALL_MEDIUM
+# ifdef _MSC_VER
+# define FAR _far
+# else
+# define FAR far
+# endif
+# endif
+# if (defined(__SMALL__) || defined(__MEDIUM__))
+ /* Turbo C small or medium model */
+# define SMALL_MEDIUM
+# ifdef __BORLANDC__
+# define FAR _far
+# else
+# define FAR far
+# endif
+# endif
+#endif
+
+#if defined(WINDOWS) || defined(WIN32)
+ /* If building or using zlib as a DLL, define ZLIB_DLL.
+ * This is not mandatory, but it offers a little performance increase.
+ */
+# ifdef ZLIB_DLL
+# if defined(WIN32) && (!defined(__BORLANDC__) || (__BORLANDC__ >= 0x500))
+# ifdef ZLIB_INTERNAL
+# define ZEXTERN extern __declspec(dllexport)
+# else
+# define ZEXTERN extern __declspec(dllimport)
+# endif
+# endif
+# endif /* ZLIB_DLL */
+ /* If building or using zlib with the WINAPI/WINAPIV calling convention,
+ * define ZLIB_WINAPI.
+ * Caution: the standard ZLIB1.DLL is NOT compiled using ZLIB_WINAPI.
+ */
+# ifdef ZLIB_WINAPI
+# ifdef FAR
+# undef FAR
+# endif
+# include <windows.h>
+ /* No need for _export, use ZLIB.DEF instead. */
+ /* For complete Windows compatibility, use WINAPI, not __stdcall. */
+# define ZEXPORT WINAPI
+# ifdef WIN32
+# define ZEXPORTVA WINAPIV
+# else
+# define ZEXPORTVA FAR CDECL
+# endif
+# endif
+#endif
+
+#if defined (__BEOS__)
+# ifdef ZLIB_DLL
+# ifdef ZLIB_INTERNAL
+# define ZEXPORT __declspec(dllexport)
+# define ZEXPORTVA __declspec(dllexport)
+# else
+# define ZEXPORT __declspec(dllimport)
+# define ZEXPORTVA __declspec(dllimport)
+# endif
+# endif
+#endif
+
+#ifndef ZEXTERN
+# define ZEXTERN extern
+#endif
+#ifndef ZEXPORT
+# define ZEXPORT
+#endif
+#ifndef ZEXPORTVA
+# define ZEXPORTVA
+#endif
+
+#ifndef FAR
+# define FAR
+#endif
+
+#if !defined(__MACTYPES__)
+typedef unsigned char Byte; /* 8 bits */
+#endif
+typedef unsigned int uInt; /* 16 bits or more */
+typedef unsigned long uLong; /* 32 bits or more */
+
+#ifdef SMALL_MEDIUM
+ /* Borland C/C++ and some old MSC versions ignore FAR inside typedef */
+# define Bytef Byte FAR
+#else
+ typedef Byte FAR Bytef;
+#endif
+typedef char FAR charf;
+typedef int FAR intf;
+typedef uInt FAR uIntf;
+typedef uLong FAR uLongf;
+
+#ifdef STDC
+ typedef void const *voidpc;
+ typedef void FAR *voidpf;
+ typedef void *voidp;
+#else
+ typedef Byte const *voidpc;
+ typedef Byte FAR *voidpf;
+ typedef Byte *voidp;
+#endif
+
+#if !defined(Z_U4) && !defined(Z_SOLO) && defined(STDC)
+# include <limits.h>
+# if (UINT_MAX == 0xffffffffUL)
+# define Z_U4 unsigned
+# elif (ULONG_MAX == 0xffffffffUL)
+# define Z_U4 unsigned long
+# elif (USHRT_MAX == 0xffffffffUL)
+# define Z_U4 unsigned short
+# endif
+#endif
+
+#ifdef Z_U4
+ typedef Z_U4 z_crc_t;
+#else
+ typedef unsigned long z_crc_t;
+#endif
+
+#ifdef HAVE_UNISTD_H /* may be set to #if 1 by ./configure */
+# define Z_HAVE_UNISTD_H
+#endif
+
+#ifdef HAVE_STDARG_H /* may be set to #if 1 by ./configure */
+# define Z_HAVE_STDARG_H
+#endif
+
+#ifdef STDC
+# ifndef Z_SOLO
+# include <sys/types.h> /* for off_t */
+# endif
+#endif
+
+#if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# ifndef Z_SOLO
+# include <stdarg.h> /* for va_list */
+# endif
+#endif
+
+#ifdef _WIN32
+# ifndef Z_SOLO
+# include <stddef.h> /* for wchar_t */
+# endif
+#endif
+
+/* a little trick to accommodate both "#define _LARGEFILE64_SOURCE" and
+ * "#define _LARGEFILE64_SOURCE 1" as requesting 64-bit operations, (even
+ * though the former does not conform to the LFS document), but considering
+ * both "#undef _LARGEFILE64_SOURCE" and "#define _LARGEFILE64_SOURCE 0" as
+ * equivalently requesting no 64-bit operations
+ */
+#if defined(_LARGEFILE64_SOURCE) && -_LARGEFILE64_SOURCE - -1 == 1
+# undef _LARGEFILE64_SOURCE
+#endif
+
+#if defined(__WATCOMC__) && !defined(Z_HAVE_UNISTD_H)
+# define Z_HAVE_UNISTD_H
+#endif
+#ifndef Z_SOLO
+# if defined(Z_HAVE_UNISTD_H) || defined(_LARGEFILE64_SOURCE)
+# include <unistd.h> /* for SEEK_*, off_t, and _LFS64_LARGEFILE */
+# ifdef VMS
+# include <unixio.h> /* for off_t */
+# endif
+# ifndef z_off_t
+# define z_off_t off_t
+# endif
+# endif
+#endif
+
+#if defined(_LFS64_LARGEFILE) && _LFS64_LARGEFILE-0
+# define Z_LFS64
+#endif
+
+#if defined(_LARGEFILE64_SOURCE) && defined(Z_LFS64)
+# define Z_LARGE64
+#endif
+
+#if defined(_FILE_OFFSET_BITS) && _FILE_OFFSET_BITS-0 == 64 && defined(Z_LFS64)
+# define Z_WANT64
+#endif
+
+#if !defined(SEEK_SET) && !defined(Z_SOLO)
+# define SEEK_SET 0 /* Seek from beginning of file. */
+# define SEEK_CUR 1 /* Seek from current position. */
+# define SEEK_END 2 /* Set file pointer to EOF plus "offset" */
+#endif
+
+#ifndef z_off_t
+# define z_off_t long
+#endif
+
+#if !defined(_WIN32) && defined(Z_LARGE64)
+# define z_off64_t off64_t
+#else
+# if defined(_WIN32) && !defined(__GNUC__) && !defined(Z_SOLO)
+# define z_off64_t __int64
+# else
+# define z_off64_t z_off_t
+# endif
+#endif
+
+/* MVS linker does not support external names larger than 8 bytes */
+#if defined(__MVS__)
+ #pragma map(deflateInit_,"DEIN")
+ #pragma map(deflateInit2_,"DEIN2")
+ #pragma map(deflateEnd,"DEEND")
+ #pragma map(deflateBound,"DEBND")
+ #pragma map(inflateInit_,"ININ")
+ #pragma map(inflateInit2_,"ININ2")
+ #pragma map(inflateEnd,"INEND")
+ #pragma map(inflateSync,"INSY")
+ #pragma map(inflateSetDictionary,"INSEDI")
+ #pragma map(compressBound,"CMBND")
+ #pragma map(inflate_table,"INTABL")
+ #pragma map(inflate_fast,"INFA")
+ #pragma map(inflate_copyright,"INCOPY")
+#endif
+
+#endif /* ZCONF_H */
diff --git a/Resources/windows-libs/HDF5/include/zlib.h b/Resources/windows-libs/HDF5/include/zlib.h
new file mode 100644
index 0000000000000000000000000000000000000000..3e0c7672ac51d93782f020bba32eb1207617e70a
--- /dev/null
+++ b/Resources/windows-libs/HDF5/include/zlib.h
@@ -0,0 +1,1768 @@
+/* zlib.h -- interface of the 'zlib' general purpose compression library
+ version 1.2.8, April 28th, 2013
+
+ Copyright (C) 1995-2013 Jean-loup Gailly and Mark Adler
+
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any damages
+ arising from the use of this software.
+
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+
+ Jean-loup Gailly Mark Adler
+ jloup@gzip.org madler@alumni.caltech.edu
+
+
+ The data format used by the zlib library is described by RFCs (Request for
+ Comments) 1950 to 1952 in the files http://tools.ietf.org/html/rfc1950
+ (zlib format), rfc1951 (deflate format) and rfc1952 (gzip format).
+*/
+
+#ifndef ZLIB_H
+#define ZLIB_H
+
+#include "zconf.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#define ZLIB_VERSION "1.2.8"
+#define ZLIB_VERNUM 0x1280
+#define ZLIB_VER_MAJOR 1
+#define ZLIB_VER_MINOR 2
+#define ZLIB_VER_REVISION 8
+#define ZLIB_VER_SUBREVISION 0
+
+/*
+ The 'zlib' compression library provides in-memory compression and
+ decompression functions, including integrity checks of the uncompressed data.
+ This version of the library supports only one compression method (deflation)
+ but other algorithms will be added later and will have the same stream
+ interface.
+
+ Compression can be done in a single step if the buffers are large enough,
+ or can be done by repeated calls of the compression function. In the latter
+ case, the application must provide more input and/or consume the output
+ (providing more output space) before each call.
+
+ The compressed data format used by default by the in-memory functions is
+ the zlib format, which is a zlib wrapper documented in RFC 1950, wrapped
+ around a deflate stream, which is itself documented in RFC 1951.
+
+ The library also supports reading and writing files in gzip (.gz) format
+ with an interface similar to that of stdio using the functions that start
+ with "gz". The gzip format is different from the zlib format. gzip is a
+ gzip wrapper, documented in RFC 1952, wrapped around a deflate stream.
+
+ This library can optionally read and write gzip streams in memory as well.
+
+ The zlib format was designed to be compact and fast for use in memory
+ and on communications channels. The gzip format was designed for single-
+ file compression on file systems, has a larger header than zlib to maintain
+ directory information, and uses a different, slower check method than zlib.
+
+ The library does not install any signal handler. The decoder checks
+ the consistency of the compressed data, so the library should never crash
+ even in case of corrupted input.
+*/
+
+typedef voidpf (*alloc_func) OF((voidpf opaque, uInt items, uInt size));
+typedef void (*free_func) OF((voidpf opaque, voidpf address));
+
+struct internal_state;
+
+typedef struct z_stream_s {
+ z_const Bytef *next_in; /* next input byte */
+ uInt avail_in; /* number of bytes available at next_in */
+ uLong total_in; /* total number of input bytes read so far */
+
+ Bytef *next_out; /* next output byte should be put there */
+ uInt avail_out; /* remaining free space at next_out */
+ uLong total_out; /* total number of bytes output so far */
+
+ z_const char *msg; /* last error message, NULL if no error */
+ struct internal_state FAR *state; /* not visible by applications */
+
+ alloc_func zalloc; /* used to allocate the internal state */
+ free_func zfree; /* used to free the internal state */
+ voidpf opaque; /* private data object passed to zalloc and zfree */
+
+ int data_type; /* best guess about the data type: binary or text */
+ uLong adler; /* adler32 value of the uncompressed data */
+ uLong reserved; /* reserved for future use */
+} z_stream;
+
+typedef z_stream FAR *z_streamp;
+
+/*
+ gzip header information passed to and from zlib routines. See RFC 1952
+ for more details on the meanings of these fields.
+*/
+typedef struct gz_header_s {
+ int text; /* true if compressed data believed to be text */
+ uLong time; /* modification time */
+ int xflags; /* extra flags (not used when writing a gzip file) */
+ int os; /* operating system */
+ Bytef *extra; /* pointer to extra field or Z_NULL if none */
+ uInt extra_len; /* extra field length (valid if extra != Z_NULL) */
+ uInt extra_max; /* space at extra (only when reading header) */
+ Bytef *name; /* pointer to zero-terminated file name or Z_NULL */
+ uInt name_max; /* space at name (only when reading header) */
+ Bytef *comment; /* pointer to zero-terminated comment or Z_NULL */
+ uInt comm_max; /* space at comment (only when reading header) */
+ int hcrc; /* true if there was or will be a header crc */
+ int done; /* true when done reading gzip header (not used
+ when writing a gzip file) */
+} gz_header;
+
+typedef gz_header FAR *gz_headerp;
+
+/*
+ The application must update next_in and avail_in when avail_in has dropped
+ to zero. It must update next_out and avail_out when avail_out has dropped
+ to zero. The application must initialize zalloc, zfree and opaque before
+ calling the init function. All other fields are set by the compression
+ library and must not be updated by the application.
+
+ The opaque value provided by the application will be passed as the first
+ parameter for calls of zalloc and zfree. This can be useful for custom
+ memory management. The compression library attaches no meaning to the
+ opaque value.
+
+ zalloc must return Z_NULL if there is not enough memory for the object.
+ If zlib is used in a multi-threaded application, zalloc and zfree must be
+ thread safe.
+
+ On 16-bit systems, the functions zalloc and zfree must be able to allocate
+ exactly 65536 bytes, but will not be required to allocate more than this if
+ the symbol MAXSEG_64K is defined (see zconf.h). WARNING: On MSDOS, pointers
+ returned by zalloc for objects of exactly 65536 bytes *must* have their
+ offset normalized to zero. The default allocation function provided by this
+ library ensures this (see zutil.c). To reduce memory requirements and avoid
+ any allocation of 64K objects, at the expense of compression ratio, compile
+ the library with -DMAX_WBITS=14 (see zconf.h).
+
+ The fields total_in and total_out can be used for statistics or progress
+ reports. After compression, total_in holds the total size of the
+ uncompressed data and may be saved for use in the decompressor (particularly
+ if the decompressor wants to decompress everything in a single step).
+*/
+
+ /* constants */
+
+#define Z_NO_FLUSH 0
+#define Z_PARTIAL_FLUSH 1
+#define Z_SYNC_FLUSH 2
+#define Z_FULL_FLUSH 3
+#define Z_FINISH 4
+#define Z_BLOCK 5
+#define Z_TREES 6
+/* Allowed flush values; see deflate() and inflate() below for details */
+
+#define Z_OK 0
+#define Z_STREAM_END 1
+#define Z_NEED_DICT 2
+#define Z_ERRNO (-1)
+#define Z_STREAM_ERROR (-2)
+#define Z_DATA_ERROR (-3)
+#define Z_MEM_ERROR (-4)
+#define Z_BUF_ERROR (-5)
+#define Z_VERSION_ERROR (-6)
+/* Return codes for the compression/decompression functions. Negative values
+ * are errors, positive values are used for special but normal events.
+ */
+
+#define Z_NO_COMPRESSION 0
+#define Z_BEST_SPEED 1
+#define Z_BEST_COMPRESSION 9
+#define Z_DEFAULT_COMPRESSION (-1)
+/* compression levels */
+
+#define Z_FILTERED 1
+#define Z_HUFFMAN_ONLY 2
+#define Z_RLE 3
+#define Z_FIXED 4
+#define Z_DEFAULT_STRATEGY 0
+/* compression strategy; see deflateInit2() below for details */
+
+#define Z_BINARY 0
+#define Z_TEXT 1
+#define Z_ASCII Z_TEXT /* for compatibility with 1.2.2 and earlier */
+#define Z_UNKNOWN 2
+/* Possible values of the data_type field (though see inflate()) */
+
+#define Z_DEFLATED 8
+/* The deflate compression method (the only one supported in this version) */
+
+#define Z_NULL 0 /* for initializing zalloc, zfree, opaque */
+
+#define zlib_version zlibVersion()
+/* for compatibility with versions < 1.0.2 */
+
+
+ /* basic functions */
+
+ZEXTERN const char * ZEXPORT zlibVersion OF((void));
+/* The application can compare zlibVersion and ZLIB_VERSION for consistency.
+ If the first character differs, the library code actually used is not
+ compatible with the zlib.h header file used by the application. This check
+ is automatically made by deflateInit and inflateInit.
+ */
+
+/*
+ZEXTERN int ZEXPORT deflateInit OF((z_streamp strm, int level));
+
+ Initializes the internal stream state for compression. The fields
+ zalloc, zfree and opaque must be initialized before by the caller. If
+ zalloc and zfree are set to Z_NULL, deflateInit updates them to use default
+ allocation functions.
+
+ The compression level must be Z_DEFAULT_COMPRESSION, or between 0 and 9:
+ 1 gives best speed, 9 gives best compression, 0 gives no compression at all
+ (the input data is simply copied a block at a time). Z_DEFAULT_COMPRESSION
+ requests a default compromise between speed and compression (currently
+ equivalent to level 6).
+
+ deflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_STREAM_ERROR if level is not a valid compression level, or
+ Z_VERSION_ERROR if the zlib library version (zlib_version) is incompatible
+ with the version assumed by the caller (ZLIB_VERSION). msg is set to null
+ if there is no error message. deflateInit does not perform any compression:
+ this will be done by deflate().
+*/
+
+
+ZEXTERN int ZEXPORT deflate OF((z_streamp strm, int flush));
+/*
+ deflate compresses as much data as possible, and stops when the input
+ buffer becomes empty or the output buffer becomes full. It may introduce
+ some output latency (reading input without producing any output) except when
+ forced to flush.
+
+ The detailed semantics are as follows. deflate performs one or both of the
+ following actions:
+
+ - Compress more input starting at next_in and update next_in and avail_in
+ accordingly. If not all input can be processed (because there is not
+ enough room in the output buffer), next_in and avail_in are updated and
+ processing will resume at this point for the next call of deflate().
+
+ - Provide more output starting at next_out and update next_out and avail_out
+ accordingly. This action is forced if the parameter flush is non zero.
+ Forcing flush frequently degrades the compression ratio, so this parameter
+ should be set only when necessary (in interactive applications). Some
+ output may be provided even if flush is not set.
+
+ Before the call of deflate(), the application should ensure that at least
+ one of the actions is possible, by providing more input and/or consuming more
+ output, and updating avail_in or avail_out accordingly; avail_out should
+ never be zero before the call. The application can consume the compressed
+ output when it wants, for example when the output buffer is full (avail_out
+ == 0), or after each call of deflate(). If deflate returns Z_OK and with
+ zero avail_out, it must be called again after making room in the output
+ buffer because there might be more output pending.
+
+ Normally the parameter flush is set to Z_NO_FLUSH, which allows deflate to
+ decide how much data to accumulate before producing output, in order to
+ maximize compression.
+
+ If the parameter flush is set to Z_SYNC_FLUSH, all pending output is
+ flushed to the output buffer and the output is aligned on a byte boundary, so
+ that the decompressor can get all input data available so far. (In
+ particular avail_in is zero after the call if enough output space has been
+ provided before the call.) Flushing may degrade compression for some
+ compression algorithms and so it should be used only when necessary. This
+ completes the current deflate block and follows it with an empty stored block
+ that is three bits plus filler bits to the next byte, followed by four bytes
+ (00 00 ff ff).
+
+ If flush is set to Z_PARTIAL_FLUSH, all pending output is flushed to the
+ output buffer, but the output is not aligned to a byte boundary. All of the
+ input data so far will be available to the decompressor, as for Z_SYNC_FLUSH.
+ This completes the current deflate block and follows it with an empty fixed
+ codes block that is 10 bits long. This assures that enough bytes are output
+ in order for the decompressor to finish the block before the empty fixed code
+ block.
+
+ If flush is set to Z_BLOCK, a deflate block is completed and emitted, as
+ for Z_SYNC_FLUSH, but the output is not aligned on a byte boundary, and up to
+ seven bits of the current block are held to be written as the next byte after
+ the next deflate block is completed. In this case, the decompressor may not
+ be provided enough bits at this point in order to complete decompression of
+ the data provided so far to the compressor. It may need to wait for the next
+ block to be emitted. This is for advanced applications that need to control
+ the emission of deflate blocks.
+
+ If flush is set to Z_FULL_FLUSH, all output is flushed as with
+ Z_SYNC_FLUSH, and the compression state is reset so that decompression can
+ restart from this point if previous compressed data has been damaged or if
+ random access is desired. Using Z_FULL_FLUSH too often can seriously degrade
+ compression.
+
+ If deflate returns with avail_out == 0, this function must be called again
+ with the same value of the flush parameter and more output space (updated
+ avail_out), until the flush is complete (deflate returns with non-zero
+ avail_out). In the case of a Z_FULL_FLUSH or Z_SYNC_FLUSH, make sure that
+ avail_out is greater than six to avoid repeated flush markers due to
+ avail_out == 0 on return.
+
+ If the parameter flush is set to Z_FINISH, pending input is processed,
+ pending output is flushed and deflate returns with Z_STREAM_END if there was
+ enough output space; if deflate returns with Z_OK, this function must be
+ called again with Z_FINISH and more output space (updated avail_out) but no
+ more input data, until it returns with Z_STREAM_END or an error. After
+ deflate has returned Z_STREAM_END, the only possible operations on the stream
+ are deflateReset or deflateEnd.
+
+ Z_FINISH can be used immediately after deflateInit if all the compression
+ is to be done in a single step. In this case, avail_out must be at least the
+ value returned by deflateBound (see below). Then deflate is guaranteed to
+ return Z_STREAM_END. If not enough output space is provided, deflate will
+ not return Z_STREAM_END, and it must be called again as described above.
+
+ deflate() sets strm->adler to the adler32 checksum of all input read
+ so far (that is, total_in bytes).
+
+ deflate() may update strm->data_type if it can make a good guess about
+ the input data type (Z_BINARY or Z_TEXT). In doubt, the data is considered
+ binary. This field is only for information purposes and does not affect the
+ compression algorithm in any manner.
+
+ deflate() returns Z_OK if some progress has been made (more input
+ processed or more output produced), Z_STREAM_END if all input has been
+ consumed and all output has been produced (only when flush is set to
+ Z_FINISH), Z_STREAM_ERROR if the stream state was inconsistent (for example
+ if next_in or next_out was Z_NULL), Z_BUF_ERROR if no progress is possible
+ (for example avail_in or avail_out was zero). Note that Z_BUF_ERROR is not
+ fatal, and deflate() can be called again with more input and more output
+ space to continue compressing.
+*/
+
+
+ZEXTERN int ZEXPORT deflateEnd OF((z_streamp strm));
+/*
+ All dynamically allocated data structures for this stream are freed.
+ This function discards any unprocessed input and does not flush any pending
+ output.
+
+ deflateEnd returns Z_OK if success, Z_STREAM_ERROR if the
+ stream state was inconsistent, Z_DATA_ERROR if the stream was freed
+ prematurely (some input or output was discarded). In the error case, msg
+ may be set but then points to a static string (which must not be
+ deallocated).
+*/
+
+
+/*
+ZEXTERN int ZEXPORT inflateInit OF((z_streamp strm));
+
+ Initializes the internal stream state for decompression. The fields
+ next_in, avail_in, zalloc, zfree and opaque must be initialized before by
+ the caller. If next_in is not Z_NULL and avail_in is large enough (the
+ exact value depends on the compression method), inflateInit determines the
+ compression method from the zlib header and allocates all data structures
+ accordingly; otherwise the allocation will be deferred to the first call of
+ inflate. If zalloc and zfree are set to Z_NULL, inflateInit updates them to
+ use default allocation functions.
+
+ inflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_VERSION_ERROR if the zlib library version is incompatible with the
+ version assumed by the caller, or Z_STREAM_ERROR if the parameters are
+ invalid, such as a null pointer to the structure. msg is set to null if
+ there is no error message. inflateInit does not perform any decompression
+ apart from possibly reading the zlib header if present: actual decompression
+ will be done by inflate(). (So next_in and avail_in may be modified, but
+ next_out and avail_out are unused and unchanged.) The current implementation
+ of inflateInit() does not process any header information -- that is deferred
+ until inflate() is called.
+*/
+
+
+ZEXTERN int ZEXPORT inflate OF((z_streamp strm, int flush));
+/*
+ inflate decompresses as much data as possible, and stops when the input
+ buffer becomes empty or the output buffer becomes full. It may introduce
+ some output latency (reading input without producing any output) except when
+ forced to flush.
+
+ The detailed semantics are as follows. inflate performs one or both of the
+ following actions:
+
+ - Decompress more input starting at next_in and update next_in and avail_in
+ accordingly. If not all input can be processed (because there is not
+ enough room in the output buffer), next_in is updated and processing will
+ resume at this point for the next call of inflate().
+
+ - Provide more output starting at next_out and update next_out and avail_out
+ accordingly. inflate() provides as much output as possible, until there is
+ no more input data or no more space in the output buffer (see below about
+ the flush parameter).
+
+ Before the call of inflate(), the application should ensure that at least
+ one of the actions is possible, by providing more input and/or consuming more
+ output, and updating the next_* and avail_* values accordingly. The
+ application can consume the uncompressed output when it wants, for example
+ when the output buffer is full (avail_out == 0), or after each call of
+ inflate(). If inflate returns Z_OK and with zero avail_out, it must be
+ called again after making room in the output buffer because there might be
+ more output pending.
+
+ The flush parameter of inflate() can be Z_NO_FLUSH, Z_SYNC_FLUSH, Z_FINISH,
+ Z_BLOCK, or Z_TREES. Z_SYNC_FLUSH requests that inflate() flush as much
+ output as possible to the output buffer. Z_BLOCK requests that inflate()
+ stop if and when it gets to the next deflate block boundary. When decoding
+ the zlib or gzip format, this will cause inflate() to return immediately
+ after the header and before the first block. When doing a raw inflate,
+ inflate() will go ahead and process the first block, and will return when it
+ gets to the end of that block, or when it runs out of data.
+
+ The Z_BLOCK option assists in appending to or combining deflate streams.
+ Also to assist in this, on return inflate() will set strm->data_type to the
+ number of unused bits in the last byte taken from strm->next_in, plus 64 if
+ inflate() is currently decoding the last block in the deflate stream, plus
+ 128 if inflate() returned immediately after decoding an end-of-block code or
+ decoding the complete header up to just before the first byte of the deflate
+ stream. The end-of-block will not be indicated until all of the uncompressed
+ data from that block has been written to strm->next_out. The number of
+ unused bits may in general be greater than seven, except when bit 7 of
+ data_type is set, in which case the number of unused bits will be less than
+ eight. data_type is set as noted here every time inflate() returns for all
+ flush options, and so can be used to determine the amount of currently
+ consumed input in bits.
+
+ The Z_TREES option behaves as Z_BLOCK does, but it also returns when the
+ end of each deflate block header is reached, before any actual data in that
+ block is decoded. This allows the caller to determine the length of the
+ deflate block header for later use in random access within a deflate block.
+ 256 is added to the value of strm->data_type when inflate() returns
+ immediately after reaching the end of the deflate block header.
+
+ inflate() should normally be called until it returns Z_STREAM_END or an
+ error. However if all decompression is to be performed in a single step (a
+ single call of inflate), the parameter flush should be set to Z_FINISH. In
+ this case all pending input is processed and all pending output is flushed;
+ avail_out must be large enough to hold all of the uncompressed data for the
+ operation to complete. (The size of the uncompressed data may have been
+ saved by the compressor for this purpose.) The use of Z_FINISH is not
+ required to perform an inflation in one step. However it may be used to
+ inform inflate that a faster approach can be used for the single inflate()
+ call. Z_FINISH also informs inflate to not maintain a sliding window if the
+ stream completes, which reduces inflate's memory footprint. If the stream
+ does not complete, either because not all of the stream is provided or not
+ enough output space is provided, then a sliding window will be allocated and
+ inflate() can be called again to continue the operation as if Z_NO_FLUSH had
+ been used.
+
+ In this implementation, inflate() always flushes as much output as
+ possible to the output buffer, and always uses the faster approach on the
+ first call. So the effects of the flush parameter in this implementation are
+ on the return value of inflate() as noted below, when inflate() returns early
+ when Z_BLOCK or Z_TREES is used, and when inflate() avoids the allocation of
+ memory for a sliding window when Z_FINISH is used.
+
+ If a preset dictionary is needed after this call (see inflateSetDictionary
+ below), inflate sets strm->adler to the Adler-32 checksum of the dictionary
+ chosen by the compressor and returns Z_NEED_DICT; otherwise it sets
+ strm->adler to the Adler-32 checksum of all output produced so far (that is,
+ total_out bytes) and returns Z_OK, Z_STREAM_END or an error code as described
+ below. At the end of the stream, inflate() checks that its computed adler32
+ checksum is equal to that saved by the compressor and returns Z_STREAM_END
+ only if the checksum is correct.
+
+ inflate() can decompress and check either zlib-wrapped or gzip-wrapped
+ deflate data. The header type is detected automatically, if requested when
+ initializing with inflateInit2(). Any information contained in the gzip
+ header is not retained, so applications that need that information should
+ instead use raw inflate, see inflateInit2() below, or inflateBack() and
+ perform their own processing of the gzip header and trailer. When processing
+ gzip-wrapped deflate data, strm->adler32 is set to the CRC-32 of the output
+ producted so far. The CRC-32 is checked against the gzip trailer.
+
+ inflate() returns Z_OK if some progress has been made (more input processed
+ or more output produced), Z_STREAM_END if the end of the compressed data has
+ been reached and all uncompressed output has been produced, Z_NEED_DICT if a
+ preset dictionary is needed at this point, Z_DATA_ERROR if the input data was
+ corrupted (input stream not conforming to the zlib format or incorrect check
+ value), Z_STREAM_ERROR if the stream structure was inconsistent (for example
+ next_in or next_out was Z_NULL), Z_MEM_ERROR if there was not enough memory,
+ Z_BUF_ERROR if no progress is possible or if there was not enough room in the
+ output buffer when Z_FINISH is used. Note that Z_BUF_ERROR is not fatal, and
+ inflate() can be called again with more input and more output space to
+ continue decompressing. If Z_DATA_ERROR is returned, the application may
+ then call inflateSync() to look for a good compression block if a partial
+ recovery of the data is desired.
+*/
+
+
+ZEXTERN int ZEXPORT inflateEnd OF((z_streamp strm));
+/*
+ All dynamically allocated data structures for this stream are freed.
+ This function discards any unprocessed input and does not flush any pending
+ output.
+
+ inflateEnd returns Z_OK if success, Z_STREAM_ERROR if the stream state
+ was inconsistent. In the error case, msg may be set but then points to a
+ static string (which must not be deallocated).
+*/
+
+
+ /* Advanced functions */
+
+/*
+ The following functions are needed only in some special applications.
+*/
+
+/*
+ZEXTERN int ZEXPORT deflateInit2 OF((z_streamp strm,
+ int level,
+ int method,
+ int windowBits,
+ int memLevel,
+ int strategy));
+
+ This is another version of deflateInit with more compression options. The
+ fields next_in, zalloc, zfree and opaque must be initialized before by the
+ caller.
+
+ The method parameter is the compression method. It must be Z_DEFLATED in
+ this version of the library.
+
+ The windowBits parameter is the base two logarithm of the window size
+ (the size of the history buffer). It should be in the range 8..15 for this
+ version of the library. Larger values of this parameter result in better
+ compression at the expense of memory usage. The default value is 15 if
+ deflateInit is used instead.
+
+ windowBits can also be -8..-15 for raw deflate. In this case, -windowBits
+ determines the window size. deflate() will then generate raw deflate data
+ with no zlib header or trailer, and will not compute an adler32 check value.
+
+ windowBits can also be greater than 15 for optional gzip encoding. Add
+ 16 to windowBits to write a simple gzip header and trailer around the
+ compressed data instead of a zlib wrapper. The gzip header will have no
+ file name, no extra data, no comment, no modification time (set to zero), no
+ header crc, and the operating system will be set to 255 (unknown). If a
+ gzip stream is being written, strm->adler is a crc32 instead of an adler32.
+
+ The memLevel parameter specifies how much memory should be allocated
+ for the internal compression state. memLevel=1 uses minimum memory but is
+ slow and reduces compression ratio; memLevel=9 uses maximum memory for
+ optimal speed. The default value is 8. See zconf.h for total memory usage
+ as a function of windowBits and memLevel.
+
+ The strategy parameter is used to tune the compression algorithm. Use the
+ value Z_DEFAULT_STRATEGY for normal data, Z_FILTERED for data produced by a
+ filter (or predictor), Z_HUFFMAN_ONLY to force Huffman encoding only (no
+ string match), or Z_RLE to limit match distances to one (run-length
+ encoding). Filtered data consists mostly of small values with a somewhat
+ random distribution. In this case, the compression algorithm is tuned to
+ compress them better. The effect of Z_FILTERED is to force more Huffman
+ coding and less string matching; it is somewhat intermediate between
+ Z_DEFAULT_STRATEGY and Z_HUFFMAN_ONLY. Z_RLE is designed to be almost as
+ fast as Z_HUFFMAN_ONLY, but give better compression for PNG image data. The
+ strategy parameter only affects the compression ratio but not the
+ correctness of the compressed output even if it is not set appropriately.
+ Z_FIXED prevents the use of dynamic Huffman codes, allowing for a simpler
+ decoder for special applications.
+
+ deflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_STREAM_ERROR if any parameter is invalid (such as an invalid
+ method), or Z_VERSION_ERROR if the zlib library version (zlib_version) is
+ incompatible with the version assumed by the caller (ZLIB_VERSION). msg is
+ set to null if there is no error message. deflateInit2 does not perform any
+ compression: this will be done by deflate().
+*/
+
+ZEXTERN int ZEXPORT deflateSetDictionary OF((z_streamp strm,
+ const Bytef *dictionary,
+ uInt dictLength));
+/*
+ Initializes the compression dictionary from the given byte sequence
+ without producing any compressed output. When using the zlib format, this
+ function must be called immediately after deflateInit, deflateInit2 or
+ deflateReset, and before any call of deflate. When doing raw deflate, this
+ function must be called either before any call of deflate, or immediately
+ after the completion of a deflate block, i.e. after all input has been
+ consumed and all output has been delivered when using any of the flush
+ options Z_BLOCK, Z_PARTIAL_FLUSH, Z_SYNC_FLUSH, or Z_FULL_FLUSH. The
+ compressor and decompressor must use exactly the same dictionary (see
+ inflateSetDictionary).
+
+ The dictionary should consist of strings (byte sequences) that are likely
+ to be encountered later in the data to be compressed, with the most commonly
+ used strings preferably put towards the end of the dictionary. Using a
+ dictionary is most useful when the data to be compressed is short and can be
+ predicted with good accuracy; the data can then be compressed better than
+ with the default empty dictionary.
+
+ Depending on the size of the compression data structures selected by
+ deflateInit or deflateInit2, a part of the dictionary may in effect be
+ discarded, for example if the dictionary is larger than the window size
+ provided in deflateInit or deflateInit2. Thus the strings most likely to be
+ useful should be put at the end of the dictionary, not at the front. In
+ addition, the current implementation of deflate will use at most the window
+ size minus 262 bytes of the provided dictionary.
+
+ Upon return of this function, strm->adler is set to the adler32 value
+ of the dictionary; the decompressor may later use this value to determine
+ which dictionary has been used by the compressor. (The adler32 value
+ applies to the whole dictionary even if only a subset of the dictionary is
+ actually used by the compressor.) If a raw deflate was requested, then the
+ adler32 value is not computed and strm->adler is not set.
+
+ deflateSetDictionary returns Z_OK if success, or Z_STREAM_ERROR if a
+ parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is
+ inconsistent (for example if deflate has already been called for this stream
+ or if not at a block boundary for raw deflate). deflateSetDictionary does
+ not perform any compression: this will be done by deflate().
+*/
+
+ZEXTERN int ZEXPORT deflateCopy OF((z_streamp dest,
+ z_streamp source));
+/*
+ Sets the destination stream as a complete copy of the source stream.
+
+ This function can be useful when several compression strategies will be
+ tried, for example when there are several ways of pre-processing the input
+ data with a filter. The streams that will be discarded should then be freed
+ by calling deflateEnd. Note that deflateCopy duplicates the internal
+ compression state which can be quite large, so this strategy is slow and can
+ consume lots of memory.
+
+ deflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_STREAM_ERROR if the source stream state was inconsistent
+ (such as zalloc being Z_NULL). msg is left unchanged in both source and
+ destination.
+*/
+
+ZEXTERN int ZEXPORT deflateReset OF((z_streamp strm));
+/*
+ This function is equivalent to deflateEnd followed by deflateInit,
+ but does not free and reallocate all the internal compression state. The
+ stream will keep the same compression level and any other attributes that
+ may have been set by deflateInit2.
+
+ deflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL).
+*/
+
+ZEXTERN int ZEXPORT deflateParams OF((z_streamp strm,
+ int level,
+ int strategy));
+/*
+ Dynamically update the compression level and compression strategy. The
+ interpretation of level and strategy is as in deflateInit2. This can be
+ used to switch between compression and straight copy of the input data, or
+ to switch to a different kind of input data requiring a different strategy.
+ If the compression level is changed, the input available so far is
+ compressed with the old level (and may be flushed); the new level will take
+ effect only at the next call of deflate().
+
+ Before the call of deflateParams, the stream state must be set as for
+ a call of deflate(), since the currently available input may have to be
+ compressed and flushed. In particular, strm->avail_out must be non-zero.
+
+ deflateParams returns Z_OK if success, Z_STREAM_ERROR if the source
+ stream state was inconsistent or if a parameter was invalid, Z_BUF_ERROR if
+ strm->avail_out was zero.
+*/
+
+ZEXTERN int ZEXPORT deflateTune OF((z_streamp strm,
+ int good_length,
+ int max_lazy,
+ int nice_length,
+ int max_chain));
+/*
+ Fine tune deflate's internal compression parameters. This should only be
+ used by someone who understands the algorithm used by zlib's deflate for
+ searching for the best matching string, and even then only by the most
+ fanatic optimizer trying to squeeze out the last compressed bit for their
+ specific input data. Read the deflate.c source code for the meaning of the
+ max_lazy, good_length, nice_length, and max_chain parameters.
+
+ deflateTune() can be called after deflateInit() or deflateInit2(), and
+ returns Z_OK on success, or Z_STREAM_ERROR for an invalid deflate stream.
+ */
+
+ZEXTERN uLong ZEXPORT deflateBound OF((z_streamp strm,
+ uLong sourceLen));
+/*
+ deflateBound() returns an upper bound on the compressed size after
+ deflation of sourceLen bytes. It must be called after deflateInit() or
+ deflateInit2(), and after deflateSetHeader(), if used. This would be used
+ to allocate an output buffer for deflation in a single pass, and so would be
+ called before deflate(). If that first deflate() call is provided the
+ sourceLen input bytes, an output buffer allocated to the size returned by
+ deflateBound(), and the flush value Z_FINISH, then deflate() is guaranteed
+ to return Z_STREAM_END. Note that it is possible for the compressed size to
+ be larger than the value returned by deflateBound() if flush options other
+ than Z_FINISH or Z_NO_FLUSH are used.
+*/
+
+ZEXTERN int ZEXPORT deflatePending OF((z_streamp strm,
+ unsigned *pending,
+ int *bits));
+/*
+ deflatePending() returns the number of bytes and bits of output that have
+ been generated, but not yet provided in the available output. The bytes not
+ provided would be due to the available output space having being consumed.
+ The number of bits of output not provided are between 0 and 7, where they
+ await more bits to join them in order to fill out a full byte. If pending
+ or bits are Z_NULL, then those values are not set.
+
+ deflatePending returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+ */
+
+ZEXTERN int ZEXPORT deflatePrime OF((z_streamp strm,
+ int bits,
+ int value));
+/*
+ deflatePrime() inserts bits in the deflate output stream. The intent
+ is that this function is used to start off the deflate output with the bits
+ leftover from a previous deflate stream when appending to it. As such, this
+ function can only be used for raw deflate, and must be used before the first
+ deflate() call after a deflateInit2() or deflateReset(). bits must be less
+ than or equal to 16, and that many of the least significant bits of value
+ will be inserted in the output.
+
+ deflatePrime returns Z_OK if success, Z_BUF_ERROR if there was not enough
+ room in the internal buffer to insert the bits, or Z_STREAM_ERROR if the
+ source stream state was inconsistent.
+*/
+
+ZEXTERN int ZEXPORT deflateSetHeader OF((z_streamp strm,
+ gz_headerp head));
+/*
+ deflateSetHeader() provides gzip header information for when a gzip
+ stream is requested by deflateInit2(). deflateSetHeader() may be called
+ after deflateInit2() or deflateReset() and before the first call of
+ deflate(). The text, time, os, extra field, name, and comment information
+ in the provided gz_header structure are written to the gzip header (xflag is
+ ignored -- the extra flags are set according to the compression level). The
+ caller must assure that, if not Z_NULL, name and comment are terminated with
+ a zero byte, and that if extra is not Z_NULL, that extra_len bytes are
+ available there. If hcrc is true, a gzip header crc is included. Note that
+ the current versions of the command-line version of gzip (up through version
+ 1.3.x) do not support header crc's, and will report that it is a "multi-part
+ gzip file" and give up.
+
+ If deflateSetHeader is not used, the default gzip header has text false,
+ the time set to zero, and os set to 255, with no extra, name, or comment
+ fields. The gzip header is returned to the default state by deflateReset().
+
+ deflateSetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+/*
+ZEXTERN int ZEXPORT inflateInit2 OF((z_streamp strm,
+ int windowBits));
+
+ This is another version of inflateInit with an extra parameter. The
+ fields next_in, avail_in, zalloc, zfree and opaque must be initialized
+ before by the caller.
+
+ The windowBits parameter is the base two logarithm of the maximum window
+ size (the size of the history buffer). It should be in the range 8..15 for
+ this version of the library. The default value is 15 if inflateInit is used
+ instead. windowBits must be greater than or equal to the windowBits value
+ provided to deflateInit2() while compressing, or it must be equal to 15 if
+ deflateInit2() was not used. If a compressed stream with a larger window
+ size is given as input, inflate() will return with the error code
+ Z_DATA_ERROR instead of trying to allocate a larger window.
+
+ windowBits can also be zero to request that inflate use the window size in
+ the zlib header of the compressed stream.
+
+ windowBits can also be -8..-15 for raw inflate. In this case, -windowBits
+ determines the window size. inflate() will then process raw deflate data,
+ not looking for a zlib or gzip header, not generating a check value, and not
+ looking for any check values for comparison at the end of the stream. This
+ is for use with other formats that use the deflate compressed data format
+ such as zip. Those formats provide their own check values. If a custom
+ format is developed using the raw deflate format for compressed data, it is
+ recommended that a check value such as an adler32 or a crc32 be applied to
+ the uncompressed data as is done in the zlib, gzip, and zip formats. For
+ most applications, the zlib format should be used as is. Note that comments
+ above on the use in deflateInit2() applies to the magnitude of windowBits.
+
+ windowBits can also be greater than 15 for optional gzip decoding. Add
+ 32 to windowBits to enable zlib and gzip decoding with automatic header
+ detection, or add 16 to decode only the gzip format (the zlib format will
+ return a Z_DATA_ERROR). If a gzip stream is being decoded, strm->adler is a
+ crc32 instead of an adler32.
+
+ inflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_VERSION_ERROR if the zlib library version is incompatible with the
+ version assumed by the caller, or Z_STREAM_ERROR if the parameters are
+ invalid, such as a null pointer to the structure. msg is set to null if
+ there is no error message. inflateInit2 does not perform any decompression
+ apart from possibly reading the zlib header if present: actual decompression
+ will be done by inflate(). (So next_in and avail_in may be modified, but
+ next_out and avail_out are unused and unchanged.) The current implementation
+ of inflateInit2() does not process any header information -- that is
+ deferred until inflate() is called.
+*/
+
+ZEXTERN int ZEXPORT inflateSetDictionary OF((z_streamp strm,
+ const Bytef *dictionary,
+ uInt dictLength));
+/*
+ Initializes the decompression dictionary from the given uncompressed byte
+ sequence. This function must be called immediately after a call of inflate,
+ if that call returned Z_NEED_DICT. The dictionary chosen by the compressor
+ can be determined from the adler32 value returned by that call of inflate.
+ The compressor and decompressor must use exactly the same dictionary (see
+ deflateSetDictionary). For raw inflate, this function can be called at any
+ time to set the dictionary. If the provided dictionary is smaller than the
+ window and there is already data in the window, then the provided dictionary
+ will amend what's there. The application must insure that the dictionary
+ that was used for compression is provided.
+
+ inflateSetDictionary returns Z_OK if success, Z_STREAM_ERROR if a
+ parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is
+ inconsistent, Z_DATA_ERROR if the given dictionary doesn't match the
+ expected one (incorrect adler32 value). inflateSetDictionary does not
+ perform any decompression: this will be done by subsequent calls of
+ inflate().
+*/
+
+ZEXTERN int ZEXPORT inflateGetDictionary OF((z_streamp strm,
+ Bytef *dictionary,
+ uInt *dictLength));
+/*
+ Returns the sliding dictionary being maintained by inflate. dictLength is
+ set to the number of bytes in the dictionary, and that many bytes are copied
+ to dictionary. dictionary must have enough space, where 32768 bytes is
+ always enough. If inflateGetDictionary() is called with dictionary equal to
+ Z_NULL, then only the dictionary length is returned, and nothing is copied.
+ Similary, if dictLength is Z_NULL, then it is not set.
+
+ inflateGetDictionary returns Z_OK on success, or Z_STREAM_ERROR if the
+ stream state is inconsistent.
+*/
+
+ZEXTERN int ZEXPORT inflateSync OF((z_streamp strm));
+/*
+ Skips invalid compressed data until a possible full flush point (see above
+ for the description of deflate with Z_FULL_FLUSH) can be found, or until all
+ available input is skipped. No output is provided.
+
+ inflateSync searches for a 00 00 FF FF pattern in the compressed data.
+ All full flush points have this pattern, but not all occurrences of this
+ pattern are full flush points.
+
+ inflateSync returns Z_OK if a possible full flush point has been found,
+ Z_BUF_ERROR if no more input was provided, Z_DATA_ERROR if no flush point
+ has been found, or Z_STREAM_ERROR if the stream structure was inconsistent.
+ In the success case, the application may save the current current value of
+ total_in which indicates where valid compressed data was found. In the
+ error case, the application may repeatedly call inflateSync, providing more
+ input each time, until success or end of the input data.
+*/
+
+ZEXTERN int ZEXPORT inflateCopy OF((z_streamp dest,
+ z_streamp source));
+/*
+ Sets the destination stream as a complete copy of the source stream.
+
+ This function can be useful when randomly accessing a large stream. The
+ first pass through the stream can periodically record the inflate state,
+ allowing restarting inflate at those points when randomly accessing the
+ stream.
+
+ inflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_STREAM_ERROR if the source stream state was inconsistent
+ (such as zalloc being Z_NULL). msg is left unchanged in both source and
+ destination.
+*/
+
+ZEXTERN int ZEXPORT inflateReset OF((z_streamp strm));
+/*
+ This function is equivalent to inflateEnd followed by inflateInit,
+ but does not free and reallocate all the internal decompression state. The
+ stream will keep attributes that may have been set by inflateInit2.
+
+ inflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL).
+*/
+
+ZEXTERN int ZEXPORT inflateReset2 OF((z_streamp strm,
+ int windowBits));
+/*
+ This function is the same as inflateReset, but it also permits changing
+ the wrap and window size requests. The windowBits parameter is interpreted
+ the same as it is for inflateInit2.
+
+ inflateReset2 returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL), or if
+ the windowBits parameter is invalid.
+*/
+
+ZEXTERN int ZEXPORT inflatePrime OF((z_streamp strm,
+ int bits,
+ int value));
+/*
+ This function inserts bits in the inflate input stream. The intent is
+ that this function is used to start inflating at a bit position in the
+ middle of a byte. The provided bits will be used before any bytes are used
+ from next_in. This function should only be used with raw inflate, and
+ should be used before the first inflate() call after inflateInit2() or
+ inflateReset(). bits must be less than or equal to 16, and that many of the
+ least significant bits of value will be inserted in the input.
+
+ If bits is negative, then the input stream bit buffer is emptied. Then
+ inflatePrime() can be called again to put bits in the buffer. This is used
+ to clear out bits leftover after feeding inflate a block description prior
+ to feeding inflate codes.
+
+ inflatePrime returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+ZEXTERN long ZEXPORT inflateMark OF((z_streamp strm));
+/*
+ This function returns two values, one in the lower 16 bits of the return
+ value, and the other in the remaining upper bits, obtained by shifting the
+ return value down 16 bits. If the upper value is -1 and the lower value is
+ zero, then inflate() is currently decoding information outside of a block.
+ If the upper value is -1 and the lower value is non-zero, then inflate is in
+ the middle of a stored block, with the lower value equaling the number of
+ bytes from the input remaining to copy. If the upper value is not -1, then
+ it is the number of bits back from the current bit position in the input of
+ the code (literal or length/distance pair) currently being processed. In
+ that case the lower value is the number of bytes already emitted for that
+ code.
+
+ A code is being processed if inflate is waiting for more input to complete
+ decoding of the code, or if it has completed decoding but is waiting for
+ more output space to write the literal or match data.
+
+ inflateMark() is used to mark locations in the input data for random
+ access, which may be at bit positions, and to note those cases where the
+ output of a code may span boundaries of random access blocks. The current
+ location in the input stream can be determined from avail_in and data_type
+ as noted in the description for the Z_BLOCK flush parameter for inflate.
+
+ inflateMark returns the value noted above or -1 << 16 if the provided
+ source stream state was inconsistent.
+*/
+
+ZEXTERN int ZEXPORT inflateGetHeader OF((z_streamp strm,
+ gz_headerp head));
+/*
+ inflateGetHeader() requests that gzip header information be stored in the
+ provided gz_header structure. inflateGetHeader() may be called after
+ inflateInit2() or inflateReset(), and before the first call of inflate().
+ As inflate() processes the gzip stream, head->done is zero until the header
+ is completed, at which time head->done is set to one. If a zlib stream is
+ being decoded, then head->done is set to -1 to indicate that there will be
+ no gzip header information forthcoming. Note that Z_BLOCK or Z_TREES can be
+ used to force inflate() to return immediately after header processing is
+ complete and before any actual data is decompressed.
+
+ The text, time, xflags, and os fields are filled in with the gzip header
+ contents. hcrc is set to true if there is a header CRC. (The header CRC
+ was valid if done is set to one.) If extra is not Z_NULL, then extra_max
+ contains the maximum number of bytes to write to extra. Once done is true,
+ extra_len contains the actual extra field length, and extra contains the
+ extra field, or that field truncated if extra_max is less than extra_len.
+ If name is not Z_NULL, then up to name_max characters are written there,
+ terminated with a zero unless the length is greater than name_max. If
+ comment is not Z_NULL, then up to comm_max characters are written there,
+ terminated with a zero unless the length is greater than comm_max. When any
+ of extra, name, or comment are not Z_NULL and the respective field is not
+ present in the header, then that field is set to Z_NULL to signal its
+ absence. This allows the use of deflateSetHeader() with the returned
+ structure to duplicate the header. However if those fields are set to
+ allocated memory, then the application will need to save those pointers
+ elsewhere so that they can be eventually freed.
+
+ If inflateGetHeader is not used, then the header information is simply
+ discarded. The header is always checked for validity, including the header
+ CRC if present. inflateReset() will reset the process to discard the header
+ information. The application would need to call inflateGetHeader() again to
+ retrieve the header from the next gzip stream.
+
+ inflateGetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+/*
+ZEXTERN int ZEXPORT inflateBackInit OF((z_streamp strm, int windowBits,
+ unsigned char FAR *window));
+
+ Initialize the internal stream state for decompression using inflateBack()
+ calls. The fields zalloc, zfree and opaque in strm must be initialized
+ before the call. If zalloc and zfree are Z_NULL, then the default library-
+ derived memory allocation routines are used. windowBits is the base two
+ logarithm of the window size, in the range 8..15. window is a caller
+ supplied buffer of that size. Except for special applications where it is
+ assured that deflate was used with small window sizes, windowBits must be 15
+ and a 32K byte window must be supplied to be able to decompress general
+ deflate streams.
+
+ See inflateBack() for the usage of these routines.
+
+ inflateBackInit will return Z_OK on success, Z_STREAM_ERROR if any of
+ the parameters are invalid, Z_MEM_ERROR if the internal state could not be
+ allocated, or Z_VERSION_ERROR if the version of the library does not match
+ the version of the header file.
+*/
+
+typedef unsigned (*in_func) OF((void FAR *,
+ z_const unsigned char FAR * FAR *));
+typedef int (*out_func) OF((void FAR *, unsigned char FAR *, unsigned));
+
+ZEXTERN int ZEXPORT inflateBack OF((z_streamp strm,
+ in_func in, void FAR *in_desc,
+ out_func out, void FAR *out_desc));
+/*
+ inflateBack() does a raw inflate with a single call using a call-back
+ interface for input and output. This is potentially more efficient than
+ inflate() for file i/o applications, in that it avoids copying between the
+ output and the sliding window by simply making the window itself the output
+ buffer. inflate() can be faster on modern CPUs when used with large
+ buffers. inflateBack() trusts the application to not change the output
+ buffer passed by the output function, at least until inflateBack() returns.
+
+ inflateBackInit() must be called first to allocate the internal state
+ and to initialize the state with the user-provided window buffer.
+ inflateBack() may then be used multiple times to inflate a complete, raw
+ deflate stream with each call. inflateBackEnd() is then called to free the
+ allocated state.
+
+ A raw deflate stream is one with no zlib or gzip header or trailer.
+ This routine would normally be used in a utility that reads zip or gzip
+ files and writes out uncompressed files. The utility would decode the
+ header and process the trailer on its own, hence this routine expects only
+ the raw deflate stream to decompress. This is different from the normal
+ behavior of inflate(), which expects either a zlib or gzip header and
+ trailer around the deflate stream.
+
+ inflateBack() uses two subroutines supplied by the caller that are then
+ called by inflateBack() for input and output. inflateBack() calls those
+ routines until it reads a complete deflate stream and writes out all of the
+ uncompressed data, or until it encounters an error. The function's
+ parameters and return types are defined above in the in_func and out_func
+ typedefs. inflateBack() will call in(in_desc, &buf) which should return the
+ number of bytes of provided input, and a pointer to that input in buf. If
+ there is no input available, in() must return zero--buf is ignored in that
+ case--and inflateBack() will return a buffer error. inflateBack() will call
+ out(out_desc, buf, len) to write the uncompressed data buf[0..len-1]. out()
+ should return zero on success, or non-zero on failure. If out() returns
+ non-zero, inflateBack() will return with an error. Neither in() nor out()
+ are permitted to change the contents of the window provided to
+ inflateBackInit(), which is also the buffer that out() uses to write from.
+ The length written by out() will be at most the window size. Any non-zero
+ amount of input may be provided by in().
+
+ For convenience, inflateBack() can be provided input on the first call by
+ setting strm->next_in and strm->avail_in. If that input is exhausted, then
+ in() will be called. Therefore strm->next_in must be initialized before
+ calling inflateBack(). If strm->next_in is Z_NULL, then in() will be called
+ immediately for input. If strm->next_in is not Z_NULL, then strm->avail_in
+ must also be initialized, and then if strm->avail_in is not zero, input will
+ initially be taken from strm->next_in[0 .. strm->avail_in - 1].
+
+ The in_desc and out_desc parameters of inflateBack() is passed as the
+ first parameter of in() and out() respectively when they are called. These
+ descriptors can be optionally used to pass any information that the caller-
+ supplied in() and out() functions need to do their job.
+
+ On return, inflateBack() will set strm->next_in and strm->avail_in to
+ pass back any unused input that was provided by the last in() call. The
+ return values of inflateBack() can be Z_STREAM_END on success, Z_BUF_ERROR
+ if in() or out() returned an error, Z_DATA_ERROR if there was a format error
+ in the deflate stream (in which case strm->msg is set to indicate the nature
+ of the error), or Z_STREAM_ERROR if the stream was not properly initialized.
+ In the case of Z_BUF_ERROR, an input or output error can be distinguished
+ using strm->next_in which will be Z_NULL only if in() returned an error. If
+ strm->next_in is not Z_NULL, then the Z_BUF_ERROR was due to out() returning
+ non-zero. (in() will always be called before out(), so strm->next_in is
+ assured to be defined if out() returns non-zero.) Note that inflateBack()
+ cannot return Z_OK.
+*/
+
+ZEXTERN int ZEXPORT inflateBackEnd OF((z_streamp strm));
+/*
+ All memory allocated by inflateBackInit() is freed.
+
+ inflateBackEnd() returns Z_OK on success, or Z_STREAM_ERROR if the stream
+ state was inconsistent.
+*/
+
+ZEXTERN uLong ZEXPORT zlibCompileFlags OF((void));
+/* Return flags indicating compile-time options.
+
+ Type sizes, two bits each, 00 = 16 bits, 01 = 32, 10 = 64, 11 = other:
+ 1.0: size of uInt
+ 3.2: size of uLong
+ 5.4: size of voidpf (pointer)
+ 7.6: size of z_off_t
+
+ Compiler, assembler, and debug options:
+ 8: DEBUG
+ 9: ASMV or ASMINF -- use ASM code
+ 10: ZLIB_WINAPI -- exported functions use the WINAPI calling convention
+ 11: 0 (reserved)
+
+ One-time table building (smaller code, but not thread-safe if true):
+ 12: BUILDFIXED -- build static block decoding tables when needed
+ 13: DYNAMIC_CRC_TABLE -- build CRC calculation tables when needed
+ 14,15: 0 (reserved)
+
+ Library content (indicates missing functionality):
+ 16: NO_GZCOMPRESS -- gz* functions cannot compress (to avoid linking
+ deflate code when not needed)
+ 17: NO_GZIP -- deflate can't write gzip streams, and inflate can't detect
+ and decode gzip streams (to avoid linking crc code)
+ 18-19: 0 (reserved)
+
+ Operation variations (changes in library functionality):
+ 20: PKZIP_BUG_WORKAROUND -- slightly more permissive inflate
+ 21: FASTEST -- deflate algorithm with only one, lowest compression level
+ 22,23: 0 (reserved)
+
+ The sprintf variant used by gzprintf (zero is best):
+ 24: 0 = vs*, 1 = s* -- 1 means limited to 20 arguments after the format
+ 25: 0 = *nprintf, 1 = *printf -- 1 means gzprintf() not secure!
+ 26: 0 = returns value, 1 = void -- 1 means inferred string length returned
+
+ Remainder:
+ 27-31: 0 (reserved)
+ */
+
+#ifndef Z_SOLO
+
+ /* utility functions */
+
+/*
+ The following utility functions are implemented on top of the basic
+ stream-oriented functions. To simplify the interface, some default options
+ are assumed (compression level and memory usage, standard memory allocation
+ functions). The source code of these utility functions can be modified if
+ you need special options.
+*/
+
+ZEXTERN int ZEXPORT compress OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen));
+/*
+ Compresses the source buffer into the destination buffer. sourceLen is
+ the byte length of the source buffer. Upon entry, destLen is the total size
+ of the destination buffer, which must be at least the value returned by
+ compressBound(sourceLen). Upon exit, destLen is the actual size of the
+ compressed buffer.
+
+ compress returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_BUF_ERROR if there was not enough room in the output
+ buffer.
+*/
+
+ZEXTERN int ZEXPORT compress2 OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen,
+ int level));
+/*
+ Compresses the source buffer into the destination buffer. The level
+ parameter has the same meaning as in deflateInit. sourceLen is the byte
+ length of the source buffer. Upon entry, destLen is the total size of the
+ destination buffer, which must be at least the value returned by
+ compressBound(sourceLen). Upon exit, destLen is the actual size of the
+ compressed buffer.
+
+ compress2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_BUF_ERROR if there was not enough room in the output buffer,
+ Z_STREAM_ERROR if the level parameter is invalid.
+*/
+
+ZEXTERN uLong ZEXPORT compressBound OF((uLong sourceLen));
+/*
+ compressBound() returns an upper bound on the compressed size after
+ compress() or compress2() on sourceLen bytes. It would be used before a
+ compress() or compress2() call to allocate the destination buffer.
+*/
+
+ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen));
+/*
+ Decompresses the source buffer into the destination buffer. sourceLen is
+ the byte length of the source buffer. Upon entry, destLen is the total size
+ of the destination buffer, which must be large enough to hold the entire
+ uncompressed data. (The size of the uncompressed data must have been saved
+ previously by the compressor and transmitted to the decompressor by some
+ mechanism outside the scope of this compression library.) Upon exit, destLen
+ is the actual size of the uncompressed buffer.
+
+ uncompress returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_BUF_ERROR if there was not enough room in the output
+ buffer, or Z_DATA_ERROR if the input data was corrupted or incomplete. In
+ the case where there is not enough room, uncompress() will fill the output
+ buffer with the uncompressed data up to that point.
+*/
+
+ /* gzip file access functions */
+
+/*
+ This library supports reading and writing files in gzip (.gz) format with
+ an interface similar to that of stdio, using the functions that start with
+ "gz". The gzip format is different from the zlib format. gzip is a gzip
+ wrapper, documented in RFC 1952, wrapped around a deflate stream.
+*/
+
+typedef struct gzFile_s *gzFile; /* semi-opaque gzip file descriptor */
+
+/*
+ZEXTERN gzFile ZEXPORT gzopen OF((const char *path, const char *mode));
+
+ Opens a gzip (.gz) file for reading or writing. The mode parameter is as
+ in fopen ("rb" or "wb") but can also include a compression level ("wb9") or
+ a strategy: 'f' for filtered data as in "wb6f", 'h' for Huffman-only
+ compression as in "wb1h", 'R' for run-length encoding as in "wb1R", or 'F'
+ for fixed code compression as in "wb9F". (See the description of
+ deflateInit2 for more information about the strategy parameter.) 'T' will
+ request transparent writing or appending with no compression and not using
+ the gzip format.
+
+ "a" can be used instead of "w" to request that the gzip stream that will
+ be written be appended to the file. "+" will result in an error, since
+ reading and writing to the same gzip file is not supported. The addition of
+ "x" when writing will create the file exclusively, which fails if the file
+ already exists. On systems that support it, the addition of "e" when
+ reading or writing will set the flag to close the file on an execve() call.
+
+ These functions, as well as gzip, will read and decode a sequence of gzip
+ streams in a file. The append function of gzopen() can be used to create
+ such a file. (Also see gzflush() for another way to do this.) When
+ appending, gzopen does not test whether the file begins with a gzip stream,
+ nor does it look for the end of the gzip streams to begin appending. gzopen
+ will simply append a gzip stream to the existing file.
+
+ gzopen can be used to read a file which is not in gzip format; in this
+ case gzread will directly read from the file without decompression. When
+ reading, this will be detected automatically by looking for the magic two-
+ byte gzip header.
+
+ gzopen returns NULL if the file could not be opened, if there was
+ insufficient memory to allocate the gzFile state, or if an invalid mode was
+ specified (an 'r', 'w', or 'a' was not provided, or '+' was provided).
+ errno can be checked to determine if the reason gzopen failed was that the
+ file could not be opened.
+*/
+
+ZEXTERN gzFile ZEXPORT gzdopen OF((int fd, const char *mode));
+/*
+ gzdopen associates a gzFile with the file descriptor fd. File descriptors
+ are obtained from calls like open, dup, creat, pipe or fileno (if the file
+ has been previously opened with fopen). The mode parameter is as in gzopen.
+
+ The next call of gzclose on the returned gzFile will also close the file
+ descriptor fd, just like fclose(fdopen(fd, mode)) closes the file descriptor
+ fd. If you want to keep fd open, use fd = dup(fd_keep); gz = gzdopen(fd,
+ mode);. The duplicated descriptor should be saved to avoid a leak, since
+ gzdopen does not close fd if it fails. If you are using fileno() to get the
+ file descriptor from a FILE *, then you will have to use dup() to avoid
+ double-close()ing the file descriptor. Both gzclose() and fclose() will
+ close the associated file descriptor, so they need to have different file
+ descriptors.
+
+ gzdopen returns NULL if there was insufficient memory to allocate the
+ gzFile state, if an invalid mode was specified (an 'r', 'w', or 'a' was not
+ provided, or '+' was provided), or if fd is -1. The file descriptor is not
+ used until the next gz* read, write, seek, or close operation, so gzdopen
+ will not detect if fd is invalid (unless fd is -1).
+*/
+
+ZEXTERN int ZEXPORT gzbuffer OF((gzFile file, unsigned size));
+/*
+ Set the internal buffer size used by this library's functions. The
+ default buffer size is 8192 bytes. This function must be called after
+ gzopen() or gzdopen(), and before any other calls that read or write the
+ file. The buffer memory allocation is always deferred to the first read or
+ write. Two buffers are allocated, either both of the specified size when
+ writing, or one of the specified size and the other twice that size when
+ reading. A larger buffer size of, for example, 64K or 128K bytes will
+ noticeably increase the speed of decompression (reading).
+
+ The new buffer size also affects the maximum length for gzprintf().
+
+ gzbuffer() returns 0 on success, or -1 on failure, such as being called
+ too late.
+*/
+
+ZEXTERN int ZEXPORT gzsetparams OF((gzFile file, int level, int strategy));
+/*
+ Dynamically update the compression level or strategy. See the description
+ of deflateInit2 for the meaning of these parameters.
+
+ gzsetparams returns Z_OK if success, or Z_STREAM_ERROR if the file was not
+ opened for writing.
+*/
+
+ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
+/*
+ Reads the given number of uncompressed bytes from the compressed file. If
+ the input file is not in gzip format, gzread copies the given number of
+ bytes into the buffer directly from the file.
+
+ After reaching the end of a gzip stream in the input, gzread will continue
+ to read, looking for another gzip stream. Any number of gzip streams may be
+ concatenated in the input file, and will all be decompressed by gzread().
+ If something other than a gzip stream is encountered after a gzip stream,
+ that remaining trailing garbage is ignored (and no error is returned).
+
+ gzread can be used to read a gzip file that is being concurrently written.
+ Upon reaching the end of the input, gzread will return with the available
+ data. If the error code returned by gzerror is Z_OK or Z_BUF_ERROR, then
+ gzclearerr can be used to clear the end of file indicator in order to permit
+ gzread to be tried again. Z_OK indicates that a gzip stream was completed
+ on the last gzread. Z_BUF_ERROR indicates that the input file ended in the
+ middle of a gzip stream. Note that gzread does not return -1 in the event
+ of an incomplete gzip stream. This error is deferred until gzclose(), which
+ will return Z_BUF_ERROR if the last gzread ended in the middle of a gzip
+ stream. Alternatively, gzerror can be used before gzclose to detect this
+ case.
+
+ gzread returns the number of uncompressed bytes actually read, less than
+ len for end of file, or -1 for error.
+*/
+
+ZEXTERN int ZEXPORT gzwrite OF((gzFile file,
+ voidpc buf, unsigned len));
+/*
+ Writes the given number of uncompressed bytes into the compressed file.
+ gzwrite returns the number of uncompressed bytes written or 0 in case of
+ error.
+*/
+
+ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...));
+/*
+ Converts, formats, and writes the arguments to the compressed file under
+ control of the format string, as in fprintf. gzprintf returns the number of
+ uncompressed bytes actually written, or 0 in case of error. The number of
+ uncompressed bytes written is limited to 8191, or one less than the buffer
+ size given to gzbuffer(). The caller should assure that this limit is not
+ exceeded. If it is exceeded, then gzprintf() will return an error (0) with
+ nothing written. In this case, there may also be a buffer overflow with
+ unpredictable consequences, which is possible only if zlib was compiled with
+ the insecure functions sprintf() or vsprintf() because the secure snprintf()
+ or vsnprintf() functions were not available. This can be determined using
+ zlibCompileFlags().
+*/
+
+ZEXTERN int ZEXPORT gzputs OF((gzFile file, const char *s));
+/*
+ Writes the given null-terminated string to the compressed file, excluding
+ the terminating null character.
+
+ gzputs returns the number of characters written, or -1 in case of error.
+*/
+
+ZEXTERN char * ZEXPORT gzgets OF((gzFile file, char *buf, int len));
+/*
+ Reads bytes from the compressed file until len-1 characters are read, or a
+ newline character is read and transferred to buf, or an end-of-file
+ condition is encountered. If any characters are read or if len == 1, the
+ string is terminated with a null character. If no characters are read due
+ to an end-of-file or len < 1, then the buffer is left untouched.
+
+ gzgets returns buf which is a null-terminated string, or it returns NULL
+ for end-of-file or in case of error. If there was an error, the contents at
+ buf are indeterminate.
+*/
+
+ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c));
+/*
+ Writes c, converted to an unsigned char, into the compressed file. gzputc
+ returns the value that was written, or -1 in case of error.
+*/
+
+ZEXTERN int ZEXPORT gzgetc OF((gzFile file));
+/*
+ Reads one byte from the compressed file. gzgetc returns this byte or -1
+ in case of end of file or error. This is implemented as a macro for speed.
+ As such, it does not do all of the checking the other functions do. I.e.
+ it does not check to see if file is NULL, nor whether the structure file
+ points to has been clobbered or not.
+*/
+
+ZEXTERN int ZEXPORT gzungetc OF((int c, gzFile file));
+/*
+ Push one character back onto the stream to be read as the first character
+ on the next read. At least one character of push-back is allowed.
+ gzungetc() returns the character pushed, or -1 on failure. gzungetc() will
+ fail if c is -1, and may fail if a character has been pushed but not read
+ yet. If gzungetc is used immediately after gzopen or gzdopen, at least the
+ output buffer size of pushed characters is allowed. (See gzbuffer above.)
+ The pushed character will be discarded if the stream is repositioned with
+ gzseek() or gzrewind().
+*/
+
+ZEXTERN int ZEXPORT gzflush OF((gzFile file, int flush));
+/*
+ Flushes all pending output into the compressed file. The parameter flush
+ is as in the deflate() function. The return value is the zlib error number
+ (see function gzerror below). gzflush is only permitted when writing.
+
+ If the flush parameter is Z_FINISH, the remaining data is written and the
+ gzip stream is completed in the output. If gzwrite() is called again, a new
+ gzip stream will be started in the output. gzread() is able to read such
+ concatented gzip streams.
+
+ gzflush should be called only when strictly necessary because it will
+ degrade compression if called too often.
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile file,
+ z_off_t offset, int whence));
+
+ Sets the starting position for the next gzread or gzwrite on the given
+ compressed file. The offset represents a number of bytes in the
+ uncompressed data stream. The whence parameter is defined as in lseek(2);
+ the value SEEK_END is not supported.
+
+ If the file is opened for reading, this function is emulated but can be
+ extremely slow. If the file is opened for writing, only forward seeks are
+ supported; gzseek then compresses a sequence of zeroes up to the new
+ starting position.
+
+ gzseek returns the resulting offset location as measured in bytes from
+ the beginning of the uncompressed stream, or -1 in case of error, in
+ particular if the file is opened for writing and the new starting position
+ would be before the current position.
+*/
+
+ZEXTERN int ZEXPORT gzrewind OF((gzFile file));
+/*
+ Rewinds the given file. This function is supported only for reading.
+
+ gzrewind(file) is equivalent to (int)gzseek(file, 0L, SEEK_SET)
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gztell OF((gzFile file));
+
+ Returns the starting position for the next gzread or gzwrite on the given
+ compressed file. This position represents a number of bytes in the
+ uncompressed data stream, and is zero when starting, even if appending or
+ reading a gzip stream from the middle of a file using gzdopen().
+
+ gztell(file) is equivalent to gzseek(file, 0L, SEEK_CUR)
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile file));
+
+ Returns the current offset in the file being read or written. This offset
+ includes the count of bytes that precede the gzip stream, for example when
+ appending or when using gzdopen() for reading. When reading, the offset
+ does not include as yet unused buffered input. This information can be used
+ for a progress indicator. On error, gzoffset() returns -1.
+*/
+
+ZEXTERN int ZEXPORT gzeof OF((gzFile file));
+/*
+ Returns true (1) if the end-of-file indicator has been set while reading,
+ false (0) otherwise. Note that the end-of-file indicator is set only if the
+ read tried to go past the end of the input, but came up short. Therefore,
+ just like feof(), gzeof() may return false even if there is no more data to
+ read, in the event that the last read request was for the exact number of
+ bytes remaining in the input file. This will happen if the input file size
+ is an exact multiple of the buffer size.
+
+ If gzeof() returns true, then the read functions will return no more data,
+ unless the end-of-file indicator is reset by gzclearerr() and the input file
+ has grown since the previous end of file was detected.
+*/
+
+ZEXTERN int ZEXPORT gzdirect OF((gzFile file));
+/*
+ Returns true (1) if file is being copied directly while reading, or false
+ (0) if file is a gzip stream being decompressed.
+
+ If the input file is empty, gzdirect() will return true, since the input
+ does not contain a gzip stream.
+
+ If gzdirect() is used immediately after gzopen() or gzdopen() it will
+ cause buffers to be allocated to allow reading the file to determine if it
+ is a gzip file. Therefore if gzbuffer() is used, it should be called before
+ gzdirect().
+
+ When writing, gzdirect() returns true (1) if transparent writing was
+ requested ("wT" for the gzopen() mode), or false (0) otherwise. (Note:
+ gzdirect() is not needed when writing. Transparent writing must be
+ explicitly requested, so the application already knows the answer. When
+ linking statically, using gzdirect() will include all of the zlib code for
+ gzip file reading and decompression, which may not be desired.)
+*/
+
+ZEXTERN int ZEXPORT gzclose OF((gzFile file));
+/*
+ Flushes all pending output if necessary, closes the compressed file and
+ deallocates the (de)compression state. Note that once file is closed, you
+ cannot call gzerror with file, since its structures have been deallocated.
+ gzclose must not be called more than once on the same file, just as free
+ must not be called more than once on the same allocation.
+
+ gzclose will return Z_STREAM_ERROR if file is not valid, Z_ERRNO on a
+ file operation error, Z_MEM_ERROR if out of memory, Z_BUF_ERROR if the
+ last read ended in the middle of a gzip stream, or Z_OK on success.
+*/
+
+ZEXTERN int ZEXPORT gzclose_r OF((gzFile file));
+ZEXTERN int ZEXPORT gzclose_w OF((gzFile file));
+/*
+ Same as gzclose(), but gzclose_r() is only for use when reading, and
+ gzclose_w() is only for use when writing or appending. The advantage to
+ using these instead of gzclose() is that they avoid linking in zlib
+ compression or decompression code that is not used when only reading or only
+ writing respectively. If gzclose() is used, then both compression and
+ decompression code will be included the application when linking to a static
+ zlib library.
+*/
+
+ZEXTERN const char * ZEXPORT gzerror OF((gzFile file, int *errnum));
+/*
+ Returns the error message for the last error which occurred on the given
+ compressed file. errnum is set to zlib error number. If an error occurred
+ in the file system and not in the compression library, errnum is set to
+ Z_ERRNO and the application may consult errno to get the exact error code.
+
+ The application must not modify the returned string. Future calls to
+ this function may invalidate the previously returned string. If file is
+ closed, then the string previously returned by gzerror will no longer be
+ available.
+
+ gzerror() should be used to distinguish errors from end-of-file for those
+ functions above that do not distinguish those cases in their return values.
+*/
+
+ZEXTERN void ZEXPORT gzclearerr OF((gzFile file));
+/*
+ Clears the error and end-of-file flags for file. This is analogous to the
+ clearerr() function in stdio. This is useful for continuing to read a gzip
+ file that is being written concurrently.
+*/
+
+#endif /* !Z_SOLO */
+
+ /* checksum functions */
+
+/*
+ These functions are not related to compression but are exported
+ anyway because they might be useful in applications using the compression
+ library.
+*/
+
+ZEXTERN uLong ZEXPORT adler32 OF((uLong adler, const Bytef *buf, uInt len));
+/*
+ Update a running Adler-32 checksum with the bytes buf[0..len-1] and
+ return the updated checksum. If buf is Z_NULL, this function returns the
+ required initial value for the checksum.
+
+ An Adler-32 checksum is almost as reliable as a CRC32 but can be computed
+ much faster.
+
+ Usage example:
+
+ uLong adler = adler32(0L, Z_NULL, 0);
+
+ while (read_buffer(buffer, length) != EOF) {
+ adler = adler32(adler, buffer, length);
+ }
+ if (adler != original_adler) error();
+*/
+
+/*
+ZEXTERN uLong ZEXPORT adler32_combine OF((uLong adler1, uLong adler2,
+ z_off_t len2));
+
+ Combine two Adler-32 checksums into one. For two sequences of bytes, seq1
+ and seq2 with lengths len1 and len2, Adler-32 checksums were calculated for
+ each, adler1 and adler2. adler32_combine() returns the Adler-32 checksum of
+ seq1 and seq2 concatenated, requiring only adler1, adler2, and len2. Note
+ that the z_off_t type (like off_t) is a signed integer. If len2 is
+ negative, the result has no meaning or utility.
+*/
+
+ZEXTERN uLong ZEXPORT crc32 OF((uLong crc, const Bytef *buf, uInt len));
+/*
+ Update a running CRC-32 with the bytes buf[0..len-1] and return the
+ updated CRC-32. If buf is Z_NULL, this function returns the required
+ initial value for the crc. Pre- and post-conditioning (one's complement) is
+ performed within this function so it shouldn't be done by the application.
+
+ Usage example:
+
+ uLong crc = crc32(0L, Z_NULL, 0);
+
+ while (read_buffer(buffer, length) != EOF) {
+ crc = crc32(crc, buffer, length);
+ }
+ if (crc != original_crc) error();
+*/
+
+/*
+ZEXTERN uLong ZEXPORT crc32_combine OF((uLong crc1, uLong crc2, z_off_t len2));
+
+ Combine two CRC-32 check values into one. For two sequences of bytes,
+ seq1 and seq2 with lengths len1 and len2, CRC-32 check values were
+ calculated for each, crc1 and crc2. crc32_combine() returns the CRC-32
+ check value of seq1 and seq2 concatenated, requiring only crc1, crc2, and
+ len2.
+*/
+
+
+ /* various hacks, don't look :) */
+
+/* deflateInit and inflateInit are macros to allow checking the zlib version
+ * and the compiler's view of z_stream:
+ */
+ZEXTERN int ZEXPORT deflateInit_ OF((z_streamp strm, int level,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT inflateInit_ OF((z_streamp strm,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT deflateInit2_ OF((z_streamp strm, int level, int method,
+ int windowBits, int memLevel,
+ int strategy, const char *version,
+ int stream_size));
+ZEXTERN int ZEXPORT inflateInit2_ OF((z_streamp strm, int windowBits,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT inflateBackInit_ OF((z_streamp strm, int windowBits,
+ unsigned char FAR *window,
+ const char *version,
+ int stream_size));
+#define deflateInit(strm, level) \
+ deflateInit_((strm), (level), ZLIB_VERSION, (int)sizeof(z_stream))
+#define inflateInit(strm) \
+ inflateInit_((strm), ZLIB_VERSION, (int)sizeof(z_stream))
+#define deflateInit2(strm, level, method, windowBits, memLevel, strategy) \
+ deflateInit2_((strm),(level),(method),(windowBits),(memLevel),\
+ (strategy), ZLIB_VERSION, (int)sizeof(z_stream))
+#define inflateInit2(strm, windowBits) \
+ inflateInit2_((strm), (windowBits), ZLIB_VERSION, \
+ (int)sizeof(z_stream))
+#define inflateBackInit(strm, windowBits, window) \
+ inflateBackInit_((strm), (windowBits), (window), \
+ ZLIB_VERSION, (int)sizeof(z_stream))
+
+#ifndef Z_SOLO
+
+/* gzgetc() macro and its supporting function and exposed data structure. Note
+ * that the real internal state is much larger than the exposed structure.
+ * This abbreviated structure exposes just enough for the gzgetc() macro. The
+ * user should not mess with these exposed elements, since their names or
+ * behavior could change in the future, perhaps even capriciously. They can
+ * only be used by the gzgetc() macro. You have been warned.
+ */
+struct gzFile_s {
+ unsigned have;
+ unsigned char *next;
+ z_off64_t pos;
+};
+ZEXTERN int ZEXPORT gzgetc_ OF((gzFile file)); /* backward compatibility */
+#ifdef Z_PREFIX_SET
+# undef z_gzgetc
+# define z_gzgetc(g) \
+ ((g)->have ? ((g)->have--, (g)->pos++, *((g)->next)++) : gzgetc(g))
+#else
+# define gzgetc(g) \
+ ((g)->have ? ((g)->have--, (g)->pos++, *((g)->next)++) : gzgetc(g))
+#endif
+
+/* provide 64-bit offset functions if _LARGEFILE64_SOURCE defined, and/or
+ * change the regular functions to 64 bits if _FILE_OFFSET_BITS is 64 (if
+ * both are true, the application gets the *64 functions, and the regular
+ * functions are changed to 64 bits) -- in case these are set on systems
+ * without large file support, _LFS64_LARGEFILE must also be true
+ */
+#ifdef Z_LARGE64
+ ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *));
+ ZEXTERN z_off64_t ZEXPORT gzseek64 OF((gzFile, z_off64_t, int));
+ ZEXTERN z_off64_t ZEXPORT gztell64 OF((gzFile));
+ ZEXTERN z_off64_t ZEXPORT gzoffset64 OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off64_t));
+ ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off64_t));
+#endif
+
+#if !defined(ZLIB_INTERNAL) && defined(Z_WANT64)
+# ifdef Z_PREFIX_SET
+# define z_gzopen z_gzopen64
+# define z_gzseek z_gzseek64
+# define z_gztell z_gztell64
+# define z_gzoffset z_gzoffset64
+# define z_adler32_combine z_adler32_combine64
+# define z_crc32_combine z_crc32_combine64
+# else
+# define gzopen gzopen64
+# define gzseek gzseek64
+# define gztell gztell64
+# define gzoffset gzoffset64
+# define adler32_combine adler32_combine64
+# define crc32_combine crc32_combine64
+# endif
+# ifndef Z_LARGE64
+ ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *));
+ ZEXTERN z_off_t ZEXPORT gzseek64 OF((gzFile, z_off_t, int));
+ ZEXTERN z_off_t ZEXPORT gztell64 OF((gzFile));
+ ZEXTERN z_off_t ZEXPORT gzoffset64 OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off_t));
+# endif
+#else
+ ZEXTERN gzFile ZEXPORT gzopen OF((const char *, const char *));
+ ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
+ ZEXTERN z_off_t ZEXPORT gztell OF((gzFile));
+ ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine OF((uLong, uLong, z_off_t));
+#endif
+
+#else /* Z_SOLO */
+
+ ZEXTERN uLong ZEXPORT adler32_combine OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine OF((uLong, uLong, z_off_t));
+
+#endif /* !Z_SOLO */
+
+/* hack for buggy compilers */
+#if !defined(ZUTIL_H) && !defined(NO_DUMMY_DECL)
+ struct internal_state {int dummy;};
+#endif
+
+/* undocumented functions */
+ZEXTERN const char * ZEXPORT zError OF((int));
+ZEXTERN int ZEXPORT inflateSyncPoint OF((z_streamp));
+ZEXTERN const z_crc_t FAR * ZEXPORT get_crc_table OF((void));
+ZEXTERN int ZEXPORT inflateUndermine OF((z_streamp, int));
+ZEXTERN int ZEXPORT inflateResetKeep OF((z_streamp));
+ZEXTERN int ZEXPORT deflateResetKeep OF((z_streamp));
+#if defined(_WIN32) && !defined(Z_SOLO)
+ZEXTERN gzFile ZEXPORT gzopen_w OF((const wchar_t *path,
+ const char *mode));
+#endif
+#if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# ifndef Z_SOLO
+ZEXTERN int ZEXPORTVA gzvprintf Z_ARG((gzFile file,
+ const char *format,
+ va_list va));
+# endif
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* ZLIB_H */
diff --git a/Resources/windows-libs/HDF5/lib/x64/hdf5.lib b/Resources/windows-libs/HDF5/lib/x64/hdf5.lib
new file mode 100644
index 0000000000000000000000000000000000000000..0e0fc9ee357fcb21e082fca482d415f8904ff311
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x64/hdf5.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x64/hdf5_cpp.lib b/Resources/windows-libs/HDF5/lib/x64/hdf5_cpp.lib
new file mode 100644
index 0000000000000000000000000000000000000000..9dce3a1e4eb13824a8bb9b98b4979cb112f1823a
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x64/hdf5_cpp.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x64/szip.lib b/Resources/windows-libs/HDF5/lib/x64/szip.lib
new file mode 100644
index 0000000000000000000000000000000000000000..aec19e330aaa19a10bcc8223925a723d3eed19df
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x64/szip.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x64/zlib.lib b/Resources/windows-libs/HDF5/lib/x64/zlib.lib
new file mode 100644
index 0000000000000000000000000000000000000000..ab44e00d57bfd86eecfd3076547ec2388e82fd28
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x64/zlib.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x86/hdf5.lib b/Resources/windows-libs/HDF5/lib/x86/hdf5.lib
new file mode 100644
index 0000000000000000000000000000000000000000..5f77ba9abb016c6c211bcddd056949034ca3fdb4
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x86/hdf5.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x86/hdf5_cpp.lib b/Resources/windows-libs/HDF5/lib/x86/hdf5_cpp.lib
new file mode 100644
index 0000000000000000000000000000000000000000..41cdaa76e431bb28db51e4378d94b5772d11d240
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x86/hdf5_cpp.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x86/szip.lib b/Resources/windows-libs/HDF5/lib/x86/szip.lib
new file mode 100644
index 0000000000000000000000000000000000000000..bebb9e5391b21543aee199b4823caf148fa15549
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x86/szip.lib differ
diff --git a/Resources/windows-libs/HDF5/lib/x86/zlib.lib b/Resources/windows-libs/HDF5/lib/x86/zlib.lib
new file mode 100644
index 0000000000000000000000000000000000000000..723710e914c81a346b22ae209eda6028cb726b6a
Binary files /dev/null and b/Resources/windows-libs/HDF5/lib/x86/zlib.lib differ
diff --git a/Source/AccessClass.cpp b/Source/AccessClass.cpp
index 281f9fde8c1e1a68243af86c0680817157ad1eda..df670c214c82e32411d04f27271f5ce01607b772 100644
--- a/Source/AccessClass.cpp
+++ b/Source/AccessClass.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,14 +24,6 @@
#include "AccessClass.h"
#include "UI/UIComponent.h"
-// #include "UI/EditorViewport.h"
-// #include "UI/ProcessorList.h"
-// #include "UI/DataViewport.h"
-// #include "UI/ControlPanel.h"
-// #include "UI/MessageCenter.h"
-// #include "UI/GraphViewer.h"
-// #include "Audio/AudioComponent.h"
-// #include "Processors/ProcessorGraph.h"
void AccessClass::setUIComponent(UIComponent* ui_)
{
diff --git a/Source/AccessClass.h b/Source/AccessClass.h
index 303150e1a83a4f3b055ede8b190cab2cb8968058..e27118fa366663b6a9432580b761f8d5d4cc5c92 100644
--- a/Source/AccessClass.h
+++ b/Source/AccessClass.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -31,7 +31,7 @@ class EditorViewport;
class ProcessorList;
class DataViewport;
class ProcessorGraph;
-class MessageCenter;
+class MessageCenterEditor;
class ControlPanel;
class AudioComponent;
class GraphViewer;
@@ -102,7 +102,7 @@ public:
}
/** Returns a pointer to the application's MessageCenter. */
- MessageCenter* getMessageCenter()
+ MessageCenterEditor* getMessageCenter()
{
return mc;
}
@@ -133,7 +133,7 @@ private:
DataViewport* dv;
ProcessorGraph* pg;
ControlPanel* cp;
- MessageCenter* mc;
+ MessageCenterEditor* mc;
AudioComponent* ac;
GraphViewer* gv;
diff --git a/Source/Audio/AudioComponent.cpp b/Source/Audio/AudioComponent.cpp
index ddfc55594edb078f186ab940e9431c0cb2d62fb0..b3db191270a18e0a856145e2a8932917e1bcad09 100644
--- a/Source/Audio/AudioComponent.cpp
+++ b/Source/Audio/AudioComponent.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Audio/AudioComponent.h b/Source/Audio/AudioComponent.h
index a77e5beaef83bc2626f7d96f12330a51161496d3..ccf050a6c07a4b10921daca6f7b221a1ffeb1467 100644
--- a/Source/Audio/AudioComponent.h
+++ b/Source/Audio/AudioComponent.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/DoxygenMainPage.h b/Source/DoxygenMainPage.h
index c72a095f7d8508d484dfb5fcf8d3ec67ae62e571..3f22c8c12cf97b94d92b8f226d35678ce1148c49 100644
--- a/Source/DoxygenMainPage.h
+++ b/Source/DoxygenMainPage.h
@@ -7,6 +7,6 @@
\section install More info
- \subsection step1 More info will appear here soon!
+ \subsection step1 More info will appear here eventually!
*/
\ No newline at end of file
diff --git a/Source/Main.cpp b/Source/Main.cpp
index ba1eeb994441f9d076c5b2ea14ecde17d5f5921f..f718d2ce77ebd09d9c76ae123dcdcaaf4af3ad4d 100644
--- a/Source/Main.cpp
+++ b/Source/Main.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -75,6 +75,7 @@ public:
std::cout.rdbuf(console_out.rdbuf());
std::cerr.rdbuf(console_out.rdbuf());
SetConsoleTitle("Debug Console");
+ std::cout << "Debug console..." << std::endl;
}
}
diff --git a/Source/MainWindow.cpp b/Source/MainWindow.cpp
index ace0b88ec056a01657b93a652ea1096a4e5341d9..c4d0c530db9a770eb1ee361203cd95fc47bbe8ed 100644
--- a/Source/MainWindow.cpp
+++ b/Source/MainWindow.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,6 @@
#include "MainWindow.h"
#include <stdio.h>
-
//-----------------------------------------------------------------------
MainWindow::MainWindow()
diff --git a/Source/MainWindow.h b/Source/MainWindow.h
index 82b4af6be0762e2fb6c98e166cddfd6b9caa5c51..5cf9976d15cfd05f095cf5ec2c2a81a357cc0fae 100644
--- a/Source/MainWindow.h
+++ b/Source/MainWindow.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -27,7 +27,7 @@
#include "../JuceLibraryCode/JuceHeader.h"
#include "UI/UIComponent.h"
#include "Audio/AudioComponent.h"
-#include "Processors/ProcessorGraph.h"
+#include "Processors/ProcessorGraph/ProcessorGraph.h"
/**
The main window for the GUI application.
diff --git a/Source/OpenGL.h b/Source/OpenGL.h
deleted file mode 100644
index d558915e36b815081f37f025b529a58ea604ca19..0000000000000000000000000000000000000000
--- a/Source/OpenGL.h
+++ /dev/null
@@ -1,46 +0,0 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-*/
-
-#ifdef _WIN32
-#include <windows.h>
-#endif
-
-#if JUCE_WINDOWS
-#include <gl/gl.h>
-#include <gl/glu.h>
-#elif JUCE_LINUX
-#include <GL/gl.h>
-#include <GL/glut.h>
-#undef KeyPress
-#elif JUCE_IPHONE
-#include <OpenGLES/ES1/gl.h>
-#include <OpenGLES/ES1/glext.h>
-#elif JUCE_MAC
-#include <GLUT/glut.h>
-#endif
-
-#ifndef GL_BGRA_EXT
-#define GL_BGRA_EXT 0x80e1
-#endif
-
-#include <FTGL/ftgl.h>
\ No newline at end of file
diff --git a/Source/Processors/ArduinoOutput.cpp b/Source/Processors/ArduinoOutput/ArduinoOutput.cpp
similarity index 95%
rename from Source/Processors/ArduinoOutput.cpp
rename to Source/Processors/ArduinoOutput/ArduinoOutput.cpp
index 345336f44ca01fd27b46f8ab394ddbe93365d673..053020e76980a015ff39f4b531e81b38f337fb8c 100755
--- a/Source/Processors/ArduinoOutput.cpp
+++ b/Source/Processors/ArduinoOutput/ArduinoOutput.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/ArduinoOutput.h b/Source/Processors/ArduinoOutput/ArduinoOutput.h
similarity index 88%
rename from Source/Processors/ArduinoOutput.h
rename to Source/Processors/ArduinoOutput/ArduinoOutput.h
index 451a7d21f10dd31dd3188c9ffc8e46c456e2c6e8..86f6480dbedf6b8bdff342f5505bfd7f12847921 100755
--- a/Source/Processors/ArduinoOutput.h
+++ b/Source/Processors/ArduinoOutput/ArduinoOutput.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,11 +24,11 @@
#ifndef __ARDUINOOUTPUT_H_F7BDA585__
#define __ARDUINOOUTPUT_H_F7BDA585__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "Editors/ArduinoOutputEditor.h"
-#include "Serial/ofArduino.h"
-#include "GenericProcessor.h"
+#include "ArduinoOutputEditor.h"
+#include "../Serial/ofArduino.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/Editors/ArduinoOutputEditor.cpp b/Source/Processors/ArduinoOutput/ArduinoOutputEditor.cpp
similarity index 94%
rename from Source/Processors/Editors/ArduinoOutputEditor.cpp
rename to Source/Processors/ArduinoOutput/ArduinoOutputEditor.cpp
index b0b635ce7ec1e37d3a2cedcb0892099c3d5a8789..90d38ef1a53757f0798b44f11fae18ab5d632c50 100644
--- a/Source/Processors/Editors/ArduinoOutputEditor.cpp
+++ b/Source/Processors/ArduinoOutput/ArduinoOutputEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/ArduinoOutputEditor.h b/Source/Processors/ArduinoOutput/ArduinoOutputEditor.h
similarity index 89%
rename from Source/Processors/Editors/ArduinoOutputEditor.h
rename to Source/Processors/ArduinoOutput/ArduinoOutputEditor.h
index 18bf0754a7dc1c01c7df136bdf34b16418f220b9..ab99d8beb85d012ed12e2b80f9b2fd74e7e7ebca 100644
--- a/Source/Processors/Editors/ArduinoOutputEditor.h
+++ b/Source/Processors/ArduinoOutput/ArduinoOutputEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,8 +26,8 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ImageIcon.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ImageIcon.h"
class ImageIcon;
diff --git a/Source/Processors/Editors/AudioEditor.cpp b/Source/Processors/AudioNode/AudioEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/AudioEditor.cpp
rename to Source/Processors/AudioNode/AudioEditor.cpp
index a3140e0334d9df3745be414c73d8f19fdbd8522d..ce49cc8ec94a16ea38cc54a1124d09e6ddb507d0 100755
--- a/Source/Processors/Editors/AudioEditor.cpp
+++ b/Source/Processors/AudioNode/AudioEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -83,7 +83,7 @@ void AudioWindowButton::setText(String text)
}
AudioEditor::AudioEditor(AudioNode* owner)
- : AudioProcessorEditor(owner), lastValue(1.0f), acw(0), isEnabled(true)
+ : AudioProcessorEditor(owner), lastValue(1.0f), isEnabled(true), acw(0)
{
diff --git a/Source/Processors/Editors/AudioEditor.h b/Source/Processors/AudioNode/AudioEditor.h
similarity index 93%
rename from Source/Processors/Editors/AudioEditor.h
rename to Source/Processors/AudioNode/AudioEditor.h
index 2cc91107d32ab8a7501b8f39454da438f80a0bde..c4808ba8dc1b9aa11edc4b0179083be73f474e8a 100755
--- a/Source/Processors/Editors/AudioEditor.h
+++ b/Source/Processors/AudioNode/AudioEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../AudioNode.h"
+#include "AudioNode.h"
#include <stdio.h>
class AudioNode;
diff --git a/Source/Processors/AudioNode.cpp b/Source/Processors/AudioNode/AudioNode.cpp
similarity index 82%
rename from Source/Processors/AudioNode.cpp
rename to Source/Processors/AudioNode/AudioNode.cpp
index bfd9c8ca986e1eeda036d40dbfd7918bd4f0290b..53d3339624768a4e73a505a4eb46cbb93b912d45 100755
--- a/Source/Processors/AudioNode.cpp
+++ b/Source/Processors/AudioNode/AudioNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -21,9 +21,9 @@
*/
+#include <cmath>
#include "AudioNode.h"
-#include "Channel.h"
AudioNode::AudioNode()
: GenericProcessor("Audio Node"), audioEditor(0), volume(0.00001f), noiseGateLevel(0.0f),
@@ -140,7 +140,8 @@ void AudioNode::setParameter(int parameterIndex, float newValue)
else if (parameterIndex == 2)
{
// noiseGateLevel level
- noiseGateLevel = newValue; // in microVolts
+
+ expander.setThreshold(newValue); // in microVolts
}
else if (parameterIndex == 100)
@@ -334,7 +335,7 @@ void AudioNode::process(AudioSampleBuffer& buffer,
// std::cout << "Samples remaining in incoming buffer: " << orphanedSamples << std::endl;
- if (orphanedSamples > 0)
+ if (orphanedSamples > 0 && (samplesInBackupBuffer + orphanedSamples < backupBuffer->getNumSamples()))
{
backupBuffer->addFrom(0, // destination channel
samplesInBackupBuffer, // destination start sample
@@ -354,20 +355,17 @@ void AudioNode::process(AudioSampleBuffer& buffer,
gain // gain to apply
);
- }
+ }
+ else {
+ samplesInBackupBuffer = 0; // just throw out the buffer in the case of an overrun
+ // not ideal, but the output still sounds fine
+ }
// Simple implementation of a "noise gate" on audio output
- float* leftChannelData = buffer.getWritePointer(0);
- float* rightChannelData = buffer.getWritePointer(1);
- float gateLevel = noiseGateLevel * gain; // uVolts scaled by gain
+ expander.process(buffer.getWritePointer(0), // left channel
+ buffer.getWritePointer(1), // right channel
+ buffer.getNumSamples());
- for (int m = 0; m < buffer.getNumSamples(); m++)
- {
- if (fabs(leftChannelData[m]) < gateLevel)
- leftChannelData[m] = 0;
- if (fabs(rightChannelData[m]) < gateLevel)
- rightChannelData[m] = 0;
- }
}
}
@@ -378,3 +376,70 @@ void AudioNode::process(AudioSampleBuffer& buffer,
}
}
+
+// ==========================================================
+
+Expander::Expander()
+{
+ threshold = 1.f;
+ output = 1.f;
+
+ env = 0.f;
+ gain = 1.f;
+
+ setAttack(1.0f);
+ setRelease(1.0f);
+ setRatio(1.2); // ratio > 1.0 will decrease gain below threshold
+}
+
+void Expander::setThreshold(float value)
+{
+ threshold = value;
+ transfer_B = output * pow(threshold, -transfer_A);
+
+ std::cout << "Threshold set to " << threshold << std::endl;
+ std::cout << "transfer_B set to " << transfer_B << std::endl;
+}
+
+
+void Expander::setRatio(float value)
+{
+ transfer_A = value - 1.f;
+ transfer_B = output * pow(threshold, -transfer_A);
+}
+
+
+void Expander::setAttack(float value)
+{
+ attack = exp(-1.f/value);
+}
+
+
+void Expander::setRelease(float value)
+{
+ release = exp(-1.f/value);
+ envelope_decay = exp(-4.f/value); /* = exp(-1/(0.25*value)) */
+}
+
+
+void Expander::process(float* leftChan, float* rightChan, int numSamples)
+{
+ float det, transfer_gain;
+
+ for(int i = 0; i < numSamples; i++)
+ {
+ det = jmax(fabs(leftChan[i]),fabs(rightChan[i]));
+ det += 10e-30f; /* add tiny DC offset (-600dB) to prevent denormals */
+
+ env = det >= env ? det : det + envelope_decay*(env-det);
+
+ transfer_gain = env < threshold ? pow(env, transfer_A) * transfer_B : output;
+
+ gain = transfer_gain < gain ?
+ transfer_gain + attack * (gain - transfer_gain) :
+ transfer_gain + release * (gain - transfer_gain);
+
+ leftChan[i] = leftChan[i] * gain;
+ rightChan[i] = rightChan[i] * gain;
+ }
+}
\ No newline at end of file
diff --git a/Source/Processors/AudioNode.h b/Source/Processors/AudioNode/AudioNode.h
similarity index 83%
rename from Source/Processors/AudioNode.h
rename to Source/Processors/AudioNode/AudioNode.h
index 011ae3af5597005c92028faec62966e323c9babe..c6fda84453558d968420e3f5abe250bc1a1f1639 100755
--- a/Source/Processors/AudioNode.h
+++ b/Source/Processors/AudioNode/AudioNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,13 +25,13 @@
#define __AUDIONODE_H_AF61F3C5__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include <stdio.h>
-#include "GenericProcessor.h"
-#include "Editors/AudioEditor.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "AudioEditor.h"
-#include "Channel.h"
+#include "../Channel/Channel.h"
class AudioEditor;
@@ -57,6 +57,27 @@ class AudioEditor;
*/
+class Expander
+{
+public:
+ Expander();
+ void setThreshold(float);
+ void setRatio(float);
+ void setAttack(float);
+ void setRelease(float);
+ void reset();
+
+ void process(float* leftChan, float* rightChan, int numSamples);
+
+private:
+ float threshold;
+ float attack, release, envelope_decay;
+ float output;
+ float transfer_A, transfer_B;
+ float env, gain;
+
+};
+
class AudioNode : public GenericProcessor
{
public:
@@ -118,6 +139,8 @@ private:
bool bufferSwap;
+ Expander expander;
+
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(AudioNode);
};
diff --git a/Source/Processors/AudioResamplingNode.cpp b/Source/Processors/AudioResamplingNode/AudioResamplingNode.cpp
similarity index 100%
rename from Source/Processors/AudioResamplingNode.cpp
rename to Source/Processors/AudioResamplingNode/AudioResamplingNode.cpp
diff --git a/Source/Processors/AudioResamplingNode.h b/Source/Processors/AudioResamplingNode/AudioResamplingNode.h
similarity index 93%
rename from Source/Processors/AudioResamplingNode.h
rename to Source/Processors/AudioResamplingNode/AudioResamplingNode.h
index b3a85b7bcd6dfd8fe387b562fe897d29f3b2617d..77cda548eaa6c289bbcc27162632b62881a9c740 100644
--- a/Source/Processors/AudioResamplingNode.h
+++ b/Source/Processors/AudioResamplingNode/AudioResamplingNode.h
@@ -24,11 +24,9 @@
#ifndef __AUDIORESAMPLINGNODE_H_CFAB182E__
#define __AUDIORESAMPLINGNODE_H_CFAB182E__
-
-
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include "../Dsp/Dsp.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/Channel.cpp b/Source/Processors/Channel/Channel.cpp
similarity index 68%
rename from Source/Processors/Channel.cpp
rename to Source/Processors/Channel/Channel.cpp
index 27c891cd999447283c6bcb8a3edb6e37e044a824..ec382768aeed4c23ad53111c3d8e59eb0030151b 100644
--- a/Source/Processors/Channel.cpp
+++ b/Source/Processors/Channel/Channel.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,8 +24,8 @@
#include "Channel.h"
-Channel::Channel(GenericProcessor* p, int n) : num(n), eventType(0), processor(p), sampleRate(44100.0), bitVolts(1.0f), isADCchannel(false),isEventChannel(false), isMonitored(false), isEnabled(true), isRecording(false)
-
+Channel::Channel(GenericProcessor* p, int n) : num(n), eventType(0), processor(p), sampleRate(44100.0),
+ isEventChannel(false), isADCchannel(false), isMonitored(false), isEnabled(true), recordIndex(-1), bitVolts(1.0f), isRecording(false)
{
nodeId = p->getNodeId();
@@ -46,9 +46,28 @@ Channel::Channel(const Channel& ch)
nodeId = ch.nodeId;
num = ch.num;
+ originalStream = ch.originalStream;
+ originalChannel = ch.originalChannel;
+
setRecordState(false);
}
+float Channel::getChannelGain()
+{
+ return bitVolts;
+}
+
+String Channel::getChannelName()
+{
+ return name;
+}
+
+void Channel::setGain(float gain)
+{
+ bitVolts = gain;
+}
+
+
void Channel::setProcessor(GenericProcessor* p)
{
processor = p;
@@ -64,10 +83,21 @@ String Channel::getName()
void Channel::setRecordState(bool t)
{
- isRecording = t;
- //std::cout << "Setting record status for channel " <<
- // nodeId << " - " << num << " to " << t << std::endl;
+ isRecording = t;
+ //std::cout << "Setting record status for channel " <<
+ // nodeId << " - " << num << " to " << t << std::endl;
+
+}
+
+void Channel::setType(channelType t)
+{
+ type = t;
+}
+
+channelType Channel::getType()
+{
+ return type;
}
void Channel::setName(String name_)
diff --git a/Source/Processors/Channel.h b/Source/Processors/Channel/Channel.h
similarity index 74%
rename from Source/Processors/Channel.h
rename to Source/Processors/Channel/Channel.h
index e13299052cc42652dd2f61de4e22d6eba48351b6..737f1bb2835d0b4feb842b891a7de7a9366527b2 100644
--- a/Source/Processors/Channel.h
+++ b/Source/Processors/Channel/Channel.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,9 +25,9 @@
#define __CHANNEL_H_DABDFE3F__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#include <stdio.h>
@@ -47,6 +47,7 @@ class GenericProcessor;
*/
+
class Channel
{
@@ -64,6 +65,12 @@ public:
/** Sets the name of a given channel. */
void setName(String);
+ /** Sets the type of a given channel. */
+ void setType(channelType t);
+
+ /** Sets the type of a given channel. */
+ channelType getType();
+
/** Restores the default settings for a given channel. */
void reset();
@@ -74,10 +81,16 @@ public:
void setRecordState(bool t); // {isRecording = t;}
/** Sets whether or not the channel will record. */
- bool getRecordState()
- {
- return isRecording;
- }
+ bool getRecordState() {return isRecording;}
+
+ /** Sets a new channel gain by modifying bitVolts */
+ void setGain(float gain);
+
+ /** returns channel's name */
+ String getChannelName();
+
+ /** returns current gain */
+ float getChannelGain();
/** The channel number.*/
int num;
@@ -91,25 +104,30 @@ public:
/** Pointer to the channel's parent processor. */
GenericProcessor* processor;
+ int originalStream;
+ int originalChannel;
+
+
// crucial information:
float sampleRate;
- float bitVolts;
-
- // boolean values:
+ channelType type;
+
+ // boolean values:
bool isEventChannel;
bool isADCchannel;
bool isMonitored;
bool isEnabled;
- // file info (for disk writing):
- String filename;
- FILE* file;
+ // file info (for disk writing). Meaning depends on RecordEngine
+ int recordIndex;
String name;
+ float bitVolts;
+
private:
- bool isRecording;
+ bool isRecording;
/** Generates a default name, based on the channel number. */
void createDefaultName();
diff --git a/Source/Processors/Editors/ChannelMappingEditor.cpp b/Source/Processors/ChannelMappingNode/ChannelMappingEditor.cpp
similarity index 93%
rename from Source/Processors/Editors/ChannelMappingEditor.cpp
rename to Source/Processors/ChannelMappingNode/ChannelMappingEditor.cpp
index c18fa487ba14d52ade34b4fd56df33aa26700eb0..4ad9ae72d9da68ac452bb2d67d1c4009733cb485 100644
--- a/Source/Processors/Editors/ChannelMappingEditor.cpp
+++ b/Source/Processors/ChannelMappingNode/ChannelMappingEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
-Copyright (C) 2013 Open Ephys
+Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,9 +23,9 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
#include "ChannelMappingEditor.h"
-#include "../ChannelMappingNode.h"
+#include "ChannelMappingNode.h"
#include "../../UI/EditorViewport.h"
-#include "ChannelSelector.h"
+#include "../Editors/ChannelSelector.h"
#include <stdio.h>
@@ -33,7 +33,7 @@ ChannelMappingEditor::ChannelMappingEditor(GenericProcessor* parentNode, bool us
: GenericEditor(parentNode, useDefaultParameterEditors), previousChannelCount(0), isConfigured(false)
{
- desiredWidth = 340;
+ desiredWidth = 350;
scrollDistance = 0;
@@ -58,6 +58,19 @@ ChannelMappingEditor::ChannelMappingEditor(GenericProcessor* parentNode, bool us
resetButton->setClickingTogglesState(false);
resetButton->setEnabled(false);
+ upButton = new TriangleButton(1);
+ upButton->addListener(this);
+ upButton->setBounds(320,30,10,8);
+ addAndMakeVisible(upButton);
+ upButton->setVisible(false);
+
+ downButton = new TriangleButton(2);
+ downButton->addListener(this);
+ downButton->setBounds(320,45,10,8);
+ addAndMakeVisible(downButton);
+ downButton->setVisible(false);
+
+
// channelSelector->setRadioStatus(true);
for (int i = 0 ; i < NUM_REFERENCES; i++)
@@ -188,6 +201,15 @@ void ChannelMappingEditor::createElectrodeButtons(int numNeeded, bool clearPrevi
channelSelector->setRadioStatus(true);
refreshButtonLocations();
+
+ if (numNeeded > 100)
+ {
+ upButton->setVisible(true);
+ downButton->setVisible(true);
+ } else {
+ upButton->setVisible(false);
+ downButton->setVisible(false);
+ }
}
void ChannelMappingEditor::refreshButtonLocations()
@@ -471,6 +493,28 @@ void ChannelMappingEditor::buttonEvent(Button* button)
}
+ } else if (button == upButton)
+ {
+
+ scrollDistance -= 1;
+
+ if (scrollDistance < 0)
+ scrollDistance = 0;
+
+ refreshButtonLocations();
+
+ } else if (button == downButton)
+ {
+
+ float maxScrollDistance = ceil(float(electrodeButtons.size() - 80) / 16.0f);
+
+ scrollDistance += 1;
+
+ if (scrollDistance > maxScrollDistance)
+ scrollDistance = maxScrollDistance;
+
+ refreshButtonLocations();
+
}
}
diff --git a/Source/Processors/Editors/ChannelMappingEditor.h b/Source/Processors/ChannelMappingNode/ChannelMappingEditor.h
similarity index 88%
rename from Source/Processors/Editors/ChannelMappingEditor.h
rename to Source/Processors/ChannelMappingNode/ChannelMappingEditor.h
index 1def1ca825b9e6182be3bacd6c5b5b6779c64684..26aac8cd323181267e7d5e8b0ef9198f7085608f 100644
--- a/Source/Processors/Editors/ChannelMappingEditor.h
+++ b/Source/Processors/ChannelMappingNode/ChannelMappingEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,9 +26,9 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
-#include "ElectrodeButtons.h" // for ElectrodeButton and ElectrodeEditorButton
+#include "../Editors/ElectrodeButtons.h" // for ElectrodeButton and ElectrodeEditorButton
#define NUM_REFERENCES 4
@@ -83,6 +83,8 @@ private:
ScopedPointer<ElectrodeEditorButton> selectAllButton;
ScopedPointer<ElectrodeEditorButton> modifyButton;
ScopedPointer<ElectrodeEditorButton> resetButton;
+ ScopedPointer<TriangleButton> upButton;
+ ScopedPointer<TriangleButton> downButton;
Array<int> channelArray;
Array<int> referenceArray;
diff --git a/Source/Processors/ChannelMappingNode.cpp b/Source/Processors/ChannelMappingNode/ChannelMappingNode.cpp
similarity index 95%
rename from Source/Processors/ChannelMappingNode.cpp
rename to Source/Processors/ChannelMappingNode/ChannelMappingNode.cpp
index f99ea6c6f5451e77218c647fa048e503eca54abd..1fa005652daa87683bc7dc13d390a6fe0d3af56d 100644
--- a/Source/Processors/ChannelMappingNode.cpp
+++ b/Source/Processors/ChannelMappingNode/ChannelMappingNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
-Copyright (C) 2013 Open Ephys
+Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
#include <stdio.h>
#include "ChannelMappingNode.h"
-#include "Editors/ChannelMappingEditor.h"
+#include "ChannelMappingEditor.h"
diff --git a/Source/Processors/ChannelMappingNode.h b/Source/Processors/ChannelMappingNode/ChannelMappingNode.h
similarity index 89%
rename from Source/Processors/ChannelMappingNode.h
rename to Source/Processors/ChannelMappingNode/ChannelMappingNode.h
index 6a69d0e1398094f450275b0b8c51af07e6a8be22..46f5572589685ad9f1b81724c517aca99c06d638 100644
--- a/Source/Processors/ChannelMappingNode.h
+++ b/Source/Processors/ChannelMappingNode/ChannelMappingNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,10 +25,10 @@
#define __CHANNELMAPPINGNODE_H_330E50E0__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/DataThreads/DataBuffer.cpp b/Source/Processors/DataThreads/DataBuffer.cpp
index 70a146bf1fa640bf4c2ec20c2ae8939a701d4a29..3eabce007cf11ac85efbb28f7a985b2d39ea49a4 100755
--- a/Source/Processors/DataThreads/DataBuffer.cpp
+++ b/Source/Processors/DataThreads/DataBuffer.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/DataThreads/DataBuffer.h b/Source/Processors/DataThreads/DataBuffer.h
index 01930fbdce8a3b0eda5ea4102c21ce337866ce3a..7bcb29a0bdb8ac1d4add69af745ab7d8af767f13 100755
--- a/Source/Processors/DataThreads/DataBuffer.h
+++ b/Source/Processors/DataThreads/DataBuffer.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/DataThreads/DataThread.cpp b/Source/Processors/DataThreads/DataThread.cpp
index aeebad2b5dde064a06294ed8b35b2e20758e80e3..5c6de4151ad9308bc3c61b7a99f3ac3a749cd5e0 100755
--- a/Source/Processors/DataThreads/DataThread.cpp
+++ b/Source/Processors/DataThreads/DataThread.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "DataThread.h"
-#include "../SourceNode.h"
+#include "../SourceNode/SourceNode.h"
DataThread::DataThread(SourceNode* s) : Thread("Data Thread"), dataBuffer(0)
diff --git a/Source/Processors/DataThreads/DataThread.h b/Source/Processors/DataThreads/DataThread.h
index e91cb608799657b99fc1bbadc232f179ed08b486..6795e28169d826ca552ad9c3b566cd159bc2f25a 100755
--- a/Source/Processors/DataThreads/DataThread.h
+++ b/Source/Processors/DataThreads/DataThread.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -27,6 +27,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
#include <stdio.h>
#include "DataBuffer.h"
+#include "../GenericProcessor/GenericProcessor.h"
class SourceNode;
@@ -92,6 +93,30 @@ public:
{
return 0;
}
+ virtual int modifyChannelName(channelType t, int stream, int ch, String newName)
+ {
+ return -1;
+ }
+ virtual int modifyChannelGain(channelType t, int stream, int ch, float gain)
+ {
+ return -1;
+ }
+ virtual void setDefaultNamingScheme(int scheme)
+ {
+ }
+
+ virtual void getChannelsInfo(StringArray &Names, Array<channelType> &type, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains)
+ {
+ };
+ virtual void getEventChannelNames(StringArray &names)
+ {
+ }
+
+ /** Returns the number of ADC channels of the data source.*/
+ virtual int getNumADCchannels()
+ {
+ return 0;
+ }
/** Changes the names of channels, if the thread needs custom names. */
virtual void updateChannelNames() { }
diff --git a/Source/Processors/DataThreads/EcubeEditor.cpp b/Source/Processors/DataThreads/EcubeEditor.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..fa9c7aecc35bdf99306de3f5b244bb75a02eed5f
--- /dev/null
+++ b/Source/Processors/DataThreads/EcubeEditor.cpp
@@ -0,0 +1,173 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2014 Open Ephys
+Copyright (C) 2014 Michael Borisov
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "EcubeEditor.h"
+
+#include "EcubeThread.h"
+
+#include <stdio.h>
+
+EcubeEditor::EcubeEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors = true)
+: GenericEditor(parentNode, useDefaultParameterEditors)
+
+{
+ desiredWidth = 180;
+
+ ipLabel = new Label("IP address label", "Address");
+ ipLabel->setBounds(35, 80, 180, 20);
+ ipLabel->setFont(Font("Small Text", 12, Font::plain));
+ addAndMakeVisible(ipLabel);
+
+ ipValue = new Label("IP address value", "127.0.0.1");
+ ipValue->setBounds(40, 50, 60, 20);
+ ipValue->setFont(Font("Default", 15, Font::plain));
+ ipValue->setColour(Label::textColourId, Colours::white);
+ ipValue->setColour(Label::backgroundColourId, Colours::grey);
+ ipValue->setEditable(true);
+ ipValue->addListener(this);
+ addAndMakeVisible(ipValue);
+
+}
+
+EcubeEditor::~EcubeEditor()
+{
+
+}
+
+void EcubeEditor::labelTextChanged(Label* label)
+{/*
+ FilterNode* fn = (FilterNode*)getProcessor();
+
+ Value val = label->getTextValue();
+ double requestedValue = double(val.getValue());
+
+ if (requestedValue < 0.01 || requestedValue > 10000)
+ {
+ sendActionMessage("Value out of range.");
+
+ if (label == highCutValue)
+ {
+ label->setText(lastHighCutString, dontSendNotification);
+ lastHighCutString = label->getText();
+ }
+ else
+ {
+ label->setText(lastLowCutString, dontSendNotification);
+ lastLowCutString = label->getText();
+ }
+
+ return;
+ }
+
+ Array<int> chans = getActiveChannels();
+
+ // This needs to change, since there's not enough feedback about whether
+ // or not individual channel settings were altered:
+
+ for (int n = 0; n < chans.size(); n++)
+ {
+
+ if (label == highCutValue)
+ {
+ double minVal = fn->getLowCutValueForChannel(n);
+
+ if (requestedValue > minVal)
+ {
+ fn->setCurrentChannel(n);
+ fn->setParameter(1, requestedValue);
+ }
+
+ lastHighCutString = label->getText();
+
+ }
+ else
+ {
+ double maxVal = fn->getHighCutValueForChannel(n);
+
+ if (requestedValue < maxVal)
+ {
+ fn->setCurrentChannel(n);
+ fn->setParameter(0, requestedValue);
+ }
+
+ lastLowCutString = label->getText();
+ }
+
+ }
+*/
+}
+
+
+void EcubeEditor::buttonEvent(Button* button)
+{
+
+ if (!acquisitionIsActive)
+ {
+
+/* if (button == fileButton)
+ {
+ //std::cout << "Button clicked." << std::endl;
+ FileChooser chooseFileReaderFile("Please select the file you want to load...",
+ lastFilePath,
+ "*");
+
+ if (chooseFileReaderFile.browseForFileToOpen())
+ {
+ // Use the selected file
+ setFile(chooseFileReaderFile.getResult().getFullPathName());
+
+ // lastFilePath = fileToRead.getParentDirectory();
+
+ // thread->setFile(fileToRead.getFullPathName());
+
+ // fileNameLabel->setText(fileToRead.getFileName(),false);
+ }
+ }
+ */
+ }
+}
+
+void EcubeEditor::saveEditorParameters(XmlElement* xml)
+{
+
+ // XmlElement* fileName = xml->createNewChildElement("FILENAME");
+ // fileName->addTextElement(lastFilePath.getFullPathName());
+
+}
+
+void EcubeEditor::loadEditorParameters(XmlElement* xml)
+{
+
+ // forEachXmlChildElement(*xml, xmlNode)
+ // {
+ // if (xmlNode->hasTagName("FILENAME"))
+ // {
+
+ // lastFilePath = File(xmlNode->getText());
+ // thread->setFile(lastFilePath.getFullPathName());
+ // fileNameLabel->setText(lastFilePath.getFullPathName(),false);
+ // }
+ // }
+
+}
diff --git a/Source/Processors/DataThreads/EcubeEditor.h b/Source/Processors/DataThreads/EcubeEditor.h
new file mode 100644
index 0000000000000000000000000000000000000000..a8c800092415e1996b45f338089f2b630e0b02be
--- /dev/null
+++ b/Source/Processors/DataThreads/EcubeEditor.h
@@ -0,0 +1,65 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2014 Open Ephys
+Copyright (C) 2014 Michael Borisov
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+
+#ifndef __ECUBEEDITOR_H_D3EC8BA8__
+#define __ECUBEEDITOR_H_D3EC8BA8__
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../Editors/GenericEditor.h"
+
+
+
+/**
+
+User interface for the "eCube" source node.
+
+@see SourceNode, eCube
+
+*/
+
+class EcubeEditor : public GenericEditor,
+ public Label::Listener
+{
+public:
+ EcubeEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors);
+ virtual ~EcubeEditor();
+
+ void buttonEvent(Button* button);
+ void labelTextChanged(Label* label);
+
+ void saveEditorParameters(XmlElement*);
+ void loadEditorParameters(XmlElement*);
+
+private:
+ ScopedPointer<Label> ipLabel;
+ ScopedPointer<Label> ipValue;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(EcubeEditor);
+
+};
+
+
+
+#endif // __ECUBEEDITOR_H_D3EC8BA8__
diff --git a/Source/Processors/DataThreads/EcubeThread.cpp b/Source/Processors/DataThreads/EcubeThread.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..1e7535c00386d17abcb40f77e4c1d4079e6bf725
--- /dev/null
+++ b/Source/Processors/DataThreads/EcubeThread.cpp
@@ -0,0 +1,567 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2014 Michael Borisov
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+#include "EcubeThread.h"
+#include "../SourceNode/SourceNode.h"
+#include "../../UI/EcubeDialogComponent.h"
+#include <stdint.h>
+
+#ifdef ECUBE_COMPILE
+#import "libid:60C0AAC2-1E0B-4FE5-A921-AF9CEEAAA582"
+
+using namespace ecubeapiLib;
+
+class EcubeDevInt
+{
+public:
+
+ enum DataFormat
+ {
+ dfSeparateChannelsAnalog,
+ dfInterleavedChannelsAnalog,
+ dfDigital
+ };
+ IEcubePtr pEcube;
+ IEcubeDevicePtr pDevice;
+ IEcubeModulePtr pModule;
+ unsigned n_channel_objects;
+ std::map<int, int> chid_map;
+ IEcubeAnalogAcquisitionPtr pStrmA;
+ IEcubeDigitalInputStreamingPtr pStrmD;
+ HeapBlock<float, true> interleaving_buffer;
+ bool buf_timestamp_locked;
+ unsigned long buf_timestamp;
+ uint64 buf_timestamp64;
+ unsigned long int_buf_size;
+ DataFormat data_format;
+};
+
+static const char bits_port0[16] = { 23, 22, -1, 14, 11, -1, -1, 28, 12, 10, 27, 26, -1, -1, -1, -1 };
+static const char bits_port1[16] = { 20, 21, 19, 18, 13, 6, 4, 5, 3, 2, -1, -1, 29, -1, 24, 25 };
+static const char bits_port2[16] = { 16, 17, 15, 8, 9, 7, 0, 1, 31, 30, -1, -1, -1, -1, -1, -1 };
+
+
+
+static std::vector<std::wstring> SafeArrayToVecStr(SAFEARRAY* sa)
+{
+ HRESULT hr;
+ long lbound, ubound;
+
+ if (SafeArrayGetElemsize(sa) != sizeof(BSTR*))
+ _com_raise_error(E_FAIL);
+ if(SafeArrayGetDim(sa)!=1)
+ _com_raise_error(E_FAIL);
+ if (FAILED(hr = SafeArrayGetLBound(sa, 1, &lbound)))
+ _com_raise_error(hr);
+ if (FAILED(hr = SafeArrayGetUBound(sa, 1, &ubound)))
+ _com_raise_error(hr);
+
+ std::vector<std::wstring> result;
+ for (long index = lbound; index <= ubound; index++)
+ {
+ BSTR raw_bstr;
+ if (FAILED(hr = SafeArrayGetElement(sa, &index, &raw_bstr)))
+ _com_raise_error(hr);
+ _bstr_t bstr(raw_bstr, false);
+ result.push_back(raw_bstr);
+ }
+ return result;
+}
+
+static StringArray SafeArrayToStringArray(SAFEARRAY* sa)
+{
+ HRESULT hr;
+ long lbound, ubound;
+ VARTYPE vt;
+
+ hr = SafeArrayGetVartype(sa, &vt);
+ if (FAILED(hr))
+ _com_raise_error(hr);
+ if (vt!=VT_BSTR)
+ _com_raise_error(E_FAIL);
+ if (SafeArrayGetElemsize(sa) != sizeof(BSTR*))
+ _com_raise_error(E_FAIL);
+ if (SafeArrayGetDim(sa) != 1)
+ _com_raise_error(E_FAIL);
+ if (FAILED(hr = SafeArrayGetLBound(sa, 1, &lbound)))
+ _com_raise_error(hr);
+ if (FAILED(hr = SafeArrayGetUBound(sa, 1, &ubound)))
+ _com_raise_error(hr);
+
+ StringArray result;
+ for (long index = lbound; index <= ubound; index++)
+ {
+ BSTR raw_bstr;
+ if (FAILED(hr = SafeArrayGetElement(sa, &index, &raw_bstr)))
+ _com_raise_error(hr);
+ _bstr_t bstr(raw_bstr, false);
+ result.add(raw_bstr);
+ }
+ return result;
+}
+
+std::vector<std::wstring> GetEcubeModuleChannels(IEcubeModulePtr& mp)
+{
+ std::vector<std::wstring> chnames;
+ {
+ SAFEARRAY *sa = mp->GetChannels();
+ chnames = SafeArrayToVecStr(sa);
+ SafeArrayDestroy(sa); // ARTEM - Leaks a safearray if an exception is thrown here
+ }
+ return chnames;
+}
+
+EcubeThread::EcubeThread(SourceNode* sn) : DataThread(sn), numberingScheme(1), acquisition_running(false)
+{
+ try
+ {
+ EcubeDialogComponent component;
+ DialogWindow::LaunchOptions opt;
+ opt.dialogTitle = "eCube parameters";
+ opt.content = OptionalScopedPointer<Component>(&component, false);
+ opt.escapeKeyTriggersCloseButton = true;
+
+ pDevInt = new EcubeDevInt;
+ pDevInt->pEcube.CreateInstance(__uuidof(Ecube));
+ {
+ SAFEARRAY *sa = pDevInt->pEcube->DetectNetworkDevices();
+ StringArray a(SafeArrayToStringArray(sa)); // ARTEM - Leaks a safearray if an exception is thrown here
+ SafeArrayDestroy(sa);
+ component.SetDeviceNames(a);
+ }
+ int dres = opt.runModal();
+ if (dres != 1)
+ {
+ throw std::runtime_error("Operation cancelled");
+ }
+
+ pDevInt->pDevice = pDevInt->pEcube->OpenNetworkDevice(_bstr_t(component.GetAddressValue().toUTF16()));
+ pDevInt->n_channel_objects = 0;
+ {
+ String selmod = component.GetModuleName();
+ if (selmod == "Headstage(s)")
+ {
+ m_samplerate = 25000.0f;
+ pDevInt->data_format = EcubeDevInt::dfSeparateChannelsAnalog;
+ // Get status of headstage selection
+ bool selhs[10];
+ component.GetHeadstageSelection(selhs);
+ bool acq_created = false;
+ for (int i = 0; i < 10; i++)
+ {
+ if (selhs[i])
+ {
+ String modname = "Headstage" + String(i + 1);
+ pDevInt->pModule = pDevInt->pDevice->OpenModule(_bstr_t(modname.toUTF16()));
+ std::vector<std::wstring> chnames = GetEcubeModuleChannels(pDevInt->pModule);
+ for (int j = 0; j < chnames.size(); j++)
+ {
+ IEcubeChannelPtr pch = pDevInt->pModule->OpenChannel(chnames[j].c_str());
+ if (!acq_created)
+ {
+ pDevInt->pStrmA = pDevInt->pEcube->CreateAnalogAcquisition(pch);
+ acq_created = true;
+ }
+ else
+ pDevInt->pStrmA->AddChannel(pch);
+ pDevInt->chid_map[pch->GetID()] = pDevInt->n_channel_objects;
+ pDevInt->n_channel_objects++;
+ }
+ }
+ }
+ dataBuffer = new DataBuffer(pDevInt->n_channel_objects, 10000);
+ // Create the interleaving buffer based on the number of channels
+ pDevInt->interleaving_buffer.malloc(sizeof(float)* 1500 * pDevInt->n_channel_objects);
+ }
+ else if (selmod == "Panel Analog Input")
+ {
+ pDevInt->pModule = pDevInt->pDevice->OpenModule(_bstr_t(L"PanelAnalogInput"));
+ m_samplerate = 25000.0f;// 40.0e6 / 572 original samplerate;
+ pDevInt->data_format = EcubeDevInt::dfInterleavedChannelsAnalog;
+ bool acq_created = false;
+ std::vector<std::wstring> chnames = GetEcubeModuleChannels(pDevInt->pModule);
+ for (int j = 0; j < chnames.size(); j++)
+ {
+ IEcubeChannelPtr pch = pDevInt->pModule->OpenChannel(chnames[j].c_str());
+ if (!acq_created)
+ {
+ pDevInt->pStrmA = pDevInt->pEcube->CreateAnalogAcquisition(pch);
+ acq_created = true;
+ }
+ else
+ pDevInt->pStrmA->AddChannel(pch);
+ pDevInt->chid_map[pch->GetID()] = pDevInt->n_channel_objects;
+ pDevInt->n_channel_objects++;
+ }
+ dataBuffer = new DataBuffer(32, 10000);
+ // The interleaving buffer is there just for short->float conversion
+ pDevInt->interleaving_buffer.malloc(sizeof(float)* 1500);
+ }
+ else if (selmod == "Panel Digital Input")
+ {
+ pDevInt->pModule = pDevInt->pDevice->OpenModule(_bstr_t(L"PanelDigitalIO"));
+ m_samplerate = 25000.0f;
+ pDevInt->data_format = EcubeDevInt::dfDigital;
+
+ bool acq_created = false;
+ std::vector<std::wstring> chnames = GetEcubeModuleChannels(pDevInt->pModule);
+ for (int j = 0; j < chnames.size(); j++)
+ {
+ IEcubeChannelPtr pch = pDevInt->pModule->OpenChannel(chnames[j].c_str());
+ if (!acq_created)
+ {
+ pDevInt->pStrmD = pDevInt->pEcube->CreateDigitalInputStreaming(pch);
+ acq_created = true;
+ }
+ else
+ pDevInt->pStrmD->AddChannel(pch);
+ pDevInt->chid_map[pch->GetID()] = pDevInt->n_channel_objects;
+ pDevInt->n_channel_objects++;
+ }
+
+ dataBuffer = new DataBuffer(64, 10000);
+ // Create the interleaving buffer based on the number of digital ports
+ pDevInt->interleaving_buffer.malloc(sizeof(float)* 1500 * 64);
+ }
+ else
+ throw std::runtime_error("Invlid module selection");
+ }
+
+ pDevInt->buf_timestamp_locked = false;
+
+ setDefaultChannelNamesAndType();
+
+ }
+ catch (_com_error& e)
+ {
+ // Convert COM errors to std::runtime_errors, to avoid making other files Windows-dependent
+ throw std::runtime_error(std::string(e.Description()));
+ }
+}
+void EcubeThread::getChannelsInfo(StringArray &Names_, Array<channelType> &type_, Array<int> &stream_, Array<int> &originalChannelNumber_, Array<float> &gains_)
+{
+ Names_ = Names;
+ type_ = type;
+ stream_ = stream;
+ originalChannelNumber_ = originalChannelNumber;
+ gains_ = gains;
+}
+
+/* This will give default names & gains to channels, unless they were manually modified by the user
+In that case, the query channelModified, will return the values that need to be put */
+void EcubeThread::setDefaultChannelNamesAndType()
+{
+ Names.clear();
+ type.clear();
+ stream.clear();
+ gains.clear();
+ originalChannelNumber.clear();
+ String prefix;
+ channelType common_type;
+
+ int numch = getNumChannels();
+
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog)
+ {
+ prefix = "HS10_CH";
+ common_type = DATA_CHANNEL;
+ }
+ else if (pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ {
+ prefix = "PAI";
+ common_type = AUX_CHANNEL;
+ }
+ else //if (pDevInt->data_format == EcubeDevInt::dfDigital)
+ {
+ prefix = "PDI";
+ common_type = AUX_CHANNEL;
+ }
+
+ if (numberingScheme != 1)
+ prefix += "_";
+
+ for (int i = 0; i < numch; i++)
+ {
+ Names.add(prefix + String(i));
+ gains.add(getBitVolts());
+ type.add(common_type);
+ originalChannelNumber.add(i);
+ }
+
+ stream.add(0);
+}
+
+void EcubeThread::setDefaultNamingScheme(int scheme)
+{
+ numberingScheme = scheme;
+ setDefaultChannelNamesAndType();
+}
+
+
+EcubeThread::~EcubeThread()
+{
+ if (acquisition_running)
+ stopAcquisition();
+ if (isThreadRunning())
+ {
+ signalThreadShouldExit();
+ }
+ waitForThreadToExit(-1);
+}
+
+int EcubeThread::getNumChannels()
+{
+ if (pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ return 32;
+ else if (pDevInt->data_format == EcubeDevInt::dfDigital)
+ return 64;
+ else
+ return pDevInt->n_channel_objects;
+}
+
+float EcubeThread::getSampleRate()
+{
+ return m_samplerate;
+}
+
+float EcubeThread::getBitVolts()
+{
+ return 10e3/32768; // For some reason the data is supposed to be in millivolts
+}
+
+bool EcubeThread::foundInputSource()
+{
+ return true;
+}
+
+bool EcubeThread::updateBuffer()
+{
+ unsigned long ba;
+ int16 eventcode = 0;
+ int nchan = pDevInt->n_channel_objects;
+
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog || pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ ba = pDevInt->pStrmA->WaitForData(100);
+ else
+ ba = pDevInt->pStrmD->WaitForData(100);
+ while (ba)
+ {
+ for (unsigned long i = 0; i < ba; i++)
+ {
+ IEcubeDataBufferPtr ab;
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog || pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ ab = pDevInt->pStrmA->FetchNextBuffer();
+ else
+ ab = pDevInt->pStrmD->FetchNextBuffer();
+ unsigned long chid = ab->GetStreamID();
+ std::map<int, int>::const_iterator chit = pDevInt->chid_map.find(chid);
+ if (chit != pDevInt->chid_map.end())
+ {
+ unsigned long bts = ab->GetTimestamp();
+ unsigned long datasize = ab->GetDataSize() / 2; // Data size is returned in bytes, not in samples
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog)
+ {
+ if (!pDevInt->buf_timestamp_locked || (bts - pDevInt->buf_timestamp >= 3200 && pDevInt->buf_timestamp - bts >= 3200)
+ /*bts != pDevInt->buf_timestamp*/
+ || datasize != pDevInt->int_buf_size)
+ {
+ // The new buffer does not match interleaving buffer length, or has a different timestamp,
+ // or interleaving buffer is empty
+ if (pDevInt->buf_timestamp_locked)
+ {
+ // Interleaving buffer is not empty.
+ // Send its contents out to the application
+ int64 cts = pDevInt->buf_timestamp64 / 3200; // Convert eCube 80MHz timestamp into a 25kHz timestamp
+ for (unsigned long j = 0; j < pDevInt->int_buf_size; j++)
+ {
+ dataBuffer->addToBuffer(pDevInt->interleaving_buffer + j*nchan, &cts, &eventCode, 1);
+ cts++;
+ }
+ // Update the 64-bit timestamp, take account of its wrap-around
+ unsigned tsdif = bts - pDevInt->buf_timestamp;
+ pDevInt->buf_timestamp64 += tsdif;
+ }
+ else
+ {
+ // The interleaving buffer is empty
+ pDevInt->buf_timestamp64 = bts;
+ }
+ pDevInt->int_buf_size = datasize;
+ pDevInt->buf_timestamp = bts;
+ pDevInt->buf_timestamp_locked = true;
+ // Clear the interleaving buffer within the new packet's size
+ memset(pDevInt->interleaving_buffer, 0, sizeof(float)*datasize*nchan);
+ }
+ chid = chit->second; // Adjust the channel id to become the channel index
+ unsigned char* dp = ab->GetDataPointer();
+ const short* pData = (const short*)dp;
+ for (unsigned long j = 0; j < datasize; j++)
+ {
+ pDevInt->interleaving_buffer[chid + nchan*j] = pData[j] * 10.0e3 / 32768; // OpenEphys uses 10e3 instead of just 10
+ }
+ }
+ else if (pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ {
+ if (pDevInt->buf_timestamp_locked)
+ {
+ // Update the 64-bit timestamp, take care of its wrap-around
+ unsigned tsdif = pDevInt->buf_timestamp - bts;
+ pDevInt->buf_timestamp64 += tsdif;
+ }
+ else
+ {
+ pDevInt->buf_timestamp64 = bts;
+ }
+ pDevInt->buf_timestamp = bts;
+ pDevInt->buf_timestamp_locked = true;
+ unsigned char* dp = ab->GetDataPointer();
+ const short* pData = (const short*)dp;
+ for (unsigned j = 0; j < datasize; j++)
+ {
+ pDevInt->interleaving_buffer[j] = pData[j] * 10.0e3 / 32768;
+ }
+ unsigned long datasam = datasize / 32;
+ int64 cts = pDevInt->buf_timestamp64 / 3200; // Convert eCube's 80MHz timestamps into number of samples on the Panel Analog input (orig sample rate 1144)
+ for (unsigned long j = 0; j < datasam; j++)
+ {
+ dataBuffer->addToBuffer(pDevInt->interleaving_buffer+j*32, &cts, &eventCode, 1);
+ cts++;
+ }
+ }
+ else // Digital data
+ {
+ unsigned tsdif = bts - pDevInt->buf_timestamp;
+ if (!pDevInt->buf_timestamp_locked || (bts != pDevInt->buf_timestamp && tsdif!=5 && tsdif!=10 && tsdif!=0xFFFFFFFB && tsdif!=0xFFFFFFFA) || datasize != pDevInt->int_buf_size)
+ {
+ // The new buffer does not match interleaving buffer length, or has a different timestamp,
+ // or interleaving buffer is empty
+ if (pDevInt->buf_timestamp_locked)
+ {
+ // Interleaving buffer is not empty.
+ // Send its contents out to the application
+ int64 cts = pDevInt->buf_timestamp64 / 3200; // Convert eCube 80MHz timestamp into a 25kHz timestamp
+ for (unsigned long j = 0; j < pDevInt->int_buf_size; j++)
+ {
+ dataBuffer->addToBuffer(pDevInt->interleaving_buffer + j*64, &cts, &eventCode, 1);
+ cts++;
+ }
+ // Update the 64-bit timestamp, take account of its wrap-around
+ pDevInt->buf_timestamp64 += tsdif;
+ }
+ else
+ {
+ // The interleaving buffer is empty
+ pDevInt->buf_timestamp64 = bts;
+ }
+ pDevInt->buf_timestamp = bts;
+ pDevInt->int_buf_size = datasize;
+ pDevInt->buf_timestamp_locked = true;
+ // Clear the interleaving buffer within the new packet's size
+ memset(pDevInt->interleaving_buffer, 0, sizeof(float)*datasize*64);
+ }
+ // Convert data from ecube buffer into the interleaving buffer format
+ chid = chit->second; // Adjust the channel id to become the channel index
+ unsigned char* dp = ab->GetDataPointer();
+ const uint16_t* pData = (const uint16_t*)dp;
+ const char* pbits;
+ switch (chid)
+ {
+ case 0:
+ case 3:
+ pbits = bits_port0;
+ break;
+ case 1:
+ case 4:
+ pbits = bits_port1;
+ break;
+ case 2:
+ case 5:
+ default:
+ pbits = bits_port2;
+ break;
+ }
+ int bitchn_offset = chid >= 3 ? 32 : 0;
+ for (unsigned long j = 0; j < datasize; j++)
+ {
+ uint16_t wrd = pData[j];
+ uint16_t msk = 1;
+ for (unsigned long k = 0; k < 16; k++)
+ {
+ int bitchn = pbits[k];
+ if (bitchn>=0)
+ {
+ float val = wrd&msk ? 1.0e3f : 0.0f;
+ pDevInt->interleaving_buffer[bitchn + bitchn_offset + 64*j] = val;
+ }
+ msk <<= 1;
+ }
+ }
+ }
+ }
+ }
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog || pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ ba = pDevInt->pStrmA->GetBuffersAcquired();
+ else
+ ba = pDevInt->pStrmD->GetBuffersAcquired();
+ }
+ return true;
+}
+
+bool EcubeThread::startAcquisition()
+{
+ pDevInt->buf_timestamp_locked = false;
+ if (!isThreadRunning())
+ startThread();
+
+ if (!acquisition_running)
+ {
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog || pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ pDevInt->pStrmA->Start();
+ else
+ pDevInt->pStrmD->Start();
+ acquisition_running = true;
+ }
+
+ return true;
+}
+
+bool EcubeThread::stopAcquisition()
+{
+ if (acquisition_running)
+ {
+ if (pDevInt->data_format == EcubeDevInt::dfSeparateChannelsAnalog || pDevInt->data_format == EcubeDevInt::dfInterleavedChannelsAnalog)
+ pDevInt->pStrmA->Stop();
+ else
+ pDevInt->pStrmD->Stop();
+ }
+ acquisition_running = false;
+ return true;
+}
+
+void EcubeThread::run()
+{
+ // Call the base class's run
+ DataThread::run();
+}
+
+
+#endif
\ No newline at end of file
diff --git a/Source/Processors/DataThreads/EcubeThread.h b/Source/Processors/DataThreads/EcubeThread.h
new file mode 100644
index 0000000000000000000000000000000000000000..14e2f0f55e746ea1420774219313a74232e46ea9
--- /dev/null
+++ b/Source/Processors/DataThreads/EcubeThread.h
@@ -0,0 +1,123 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2014 Open Ephys
+Copyright (C) 2014 Michael Borisov
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+
+#ifndef __ECUBETHREAD_H_EC4CAD67__
+#define __ECUBETHREAD_H_EC4CAD67__
+
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+
+#include <stdio.h>
+#include <string.h>
+
+#include "DataThread.h"
+#include "../GenericProcessor/GenericProcessor.h"
+
+#define MAX_NUM_DATA_STREAMS 8
+
+class SourceNode;
+
+#if JUCE_WINDOWS
+#ifdef ECUBE_SUPPORT
+#define ECUBE_COMPILE
+#endif
+#endif
+
+#ifdef ECUBE_COMPILE
+class EcubeDevInt;
+#endif
+
+class EcubeThread : public DataThread
+
+{
+public:
+
+#ifdef ECUBE_COMPILE
+ EcubeThread(SourceNode* sn);
+ ~EcubeThread();
+
+ void run(); // Overridden
+
+ /** Fills the DataBuffer with incoming data. This is the most important
+ method for each DataThread.*/
+ virtual bool updateBuffer();
+
+ /** Returns true if the data source is connected, false otherwise.*/
+ virtual bool foundInputSource();
+
+ /** Initializes data transfer.*/
+ virtual bool startAcquisition();
+
+ /** Stops data transfer.*/
+ virtual bool stopAcquisition();
+
+ /** Returns the number of continuous channels the data source can provide.*/
+ virtual int getNumChannels();
+
+ /** Returns the sample rate of the data source.*/
+ virtual float getSampleRate();
+
+ /** Returns the volts per bit of the data source.*/
+ virtual float getBitVolts();
+
+ virtual void getChannelsInfo(StringArray &Names, Array<channelType> &type, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains);
+ void setDefaultNamingScheme(int scheme);
+
+
+private:
+ void setDefaultChannelNamesAndType();
+
+ // used for data stream names...
+ int numberingScheme;
+ StringArray Names;
+ Array<channelType> type;
+ Array<float> gains;
+ Array<int> stream;
+ Array<int> originalChannelNumber;
+
+ ScopedPointer<EcubeDevInt> pDevInt;
+
+ float m_samplerate;
+ bool acquisition_running;
+
+#else
+/** Empty methods for non-Windows platforms **/
+ bool updateBuffer() {return false;}
+ bool foundInputSource() {return false;}
+ bool startAcquisition() {return false;}
+ bool stopAcquisition() {return false;}
+ int getNumChannels() {return 0;}
+ float getSampleRate() {return 0.0f;}
+ float getBitVolts() {return 0.0f;}
+
+
+#endif
+
+
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(EcubeThread);
+};
+
+#endif // __RHD2000THREAD_H_2C4CBD67__
diff --git a/Source/Processors/DataThreads/FPGAThread.cpp b/Source/Processors/DataThreads/FPGAThread.cpp
index 94fb0030b3c07cc8a99ac5d8384520ca3c5eb11a..d42d33778bba90cdd0892fbbaaf5191a4539d40d 100644
--- a/Source/Processors/DataThreads/FPGAThread.cpp
+++ b/Source/Processors/DataThreads/FPGAThread.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "FPGAThread.h"
-#include "../SourceNode.h"
+#include "../SourceNode/SourceNode.h"
#include <string.h>
#include <math.h>
diff --git a/Source/Processors/DataThreads/FPGAThread.h b/Source/Processors/DataThreads/FPGAThread.h
index a1f1dce5216fedb38b4415c1968661ccc29dba89..f49c7dfdbbf12a938929a1446b608a4024604b29 100755
--- a/Source/Processors/DataThreads/FPGAThread.h
+++ b/Source/Processors/DataThreads/FPGAThread.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/DataThreads/FileReaderThread.cpp b/Source/Processors/DataThreads/FileReaderThread.cpp
index 804b3f80ff9883e2169564dcfb0cd1b48ec1156c..bfa12cc7805d54e1f7a2744f1b9ddeb7a86d4ac6 100755
--- a/Source/Processors/DataThreads/FileReaderThread.cpp
+++ b/Source/Processors/DataThreads/FileReaderThread.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -21,7 +21,7 @@
*/
-#include "../SourceNode.h"
+#include "../SourceNode/SourceNode.h"
#include "FileReaderThread.h"
FileReaderThread::FileReaderThread(SourceNode* sn) :
@@ -133,6 +133,11 @@ bool FileReaderThread::updateBuffer()
size_t numRead = fread(readBuffer, 2, bufferSize, input);
+ if (numRead != bufferSize)
+ {
+ std::cout << "Fewer samples read than were requested." << std::endl;
+ }
+
int chan = 0;
for (int n = 0; n < bufferSize; n++)
diff --git a/Source/Processors/DataThreads/FileReaderThread.h b/Source/Processors/DataThreads/FileReaderThread.h
index bdf9dd1fc5d44efcb298b6fc9f5db4c02e49409f..c88c1e2024b5bc50acb7304d00ab20606f0afd51 100755
--- a/Source/Processors/DataThreads/FileReaderThread.h
+++ b/Source/Processors/DataThreads/FileReaderThread.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/DataThreads/IntanThread.cpp b/Source/Processors/DataThreads/IntanThread.cpp
index 04fb6f681fcb70402ce79f0496924008d82e8877..21cf1ef80d7da92861f5339544d0aa409dacc476 100755
--- a/Source/Processors/DataThreads/IntanThread.cpp
+++ b/Source/Processors/DataThreads/IntanThread.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/DataThreads/IntanThread.h b/Source/Processors/DataThreads/IntanThread.h
index d09eaf3c74921f11763d4cddc44c41c29aaa69bb..6a26cef17c11a7963b1d093997ce8d32a777da8e 100755
--- a/Source/Processors/DataThreads/IntanThread.h
+++ b/Source/Processors/DataThreads/IntanThread.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/RHD2000Editor.cpp b/Source/Processors/DataThreads/RHD2000Editor.cpp
similarity index 52%
rename from Source/Processors/Editors/RHD2000Editor.cpp
rename to Source/Processors/DataThreads/RHD2000Editor.cpp
index 5f6d87906bb3d4f3a038f105a17813c5d91417a2..4c9619a5b4d6574ba42188d0cad83c4c4d93dd8a 100644
--- a/Source/Processors/Editors/RHD2000Editor.cpp
+++ b/Source/Processors/DataThreads/RHD2000Editor.cpp
@@ -1,48 +1,494 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
- */
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
#include "RHD2000Editor.h"
#include "../../UI/EditorViewport.h"
#include <cmath>
+#include "../Editors/ChannelSelector.h"
+#include "../SourceNode/SourceNode.h"
+#include "RHD2000Thread.h"
+
#ifdef WIN32
#if (_MSC_VER < 1800) //round doesn't exist on MSVC prior to 2013 version
inline double round(double x) { return floor(x+0.5);}
#endif
#endif
-#include "ChannelSelector.h"
+FPGAchannelList::FPGAchannelList(GenericProcessor* proc_, Viewport *p, FPGAcanvas*c) : proc(proc_), viewport(p), canvas(c)
+{
+ channelComponents.clear();
+
+ numberingSchemeLabel = new Label("Numbering scheme:","Numbering scheme:");
+ numberingSchemeLabel->setEditable(false);
+ numberingSchemeLabel->setBounds(10,10,150, 25);
+ numberingSchemeLabel->setColour(Label::textColourId,juce::Colours::white);
+ addAndMakeVisible(numberingSchemeLabel);
+
+ numberingScheme = new ComboBox("numberingScheme");
+ numberingScheme->addItem("Continuous",1);
+ numberingScheme->addItem("Per Stream",2);
+ numberingScheme->setBounds(160,10,100,25);
+ numberingScheme->addListener(this);
+ numberingScheme->setSelectedId(1, dontSendNotification);
+ addAndMakeVisible(numberingScheme);
+
+ impedanceButton = new UtilityButton("Measure Impedance", Font("Default", 13, Font::plain));
+ impedanceButton->setRadius(3);
+ impedanceButton->setBounds(280,10,140,25);
+ impedanceButton->addListener(this);
+ addAndMakeVisible(impedanceButton);
+
+
+ gains.clear();
+ gains.add( 0.01);
+ gains.add( 0.1);
+ gains.add( 1);
+ gains.add( 2);
+ gains.add( 5);
+ gains.add( 10);
+ gains.add( 20);
+ gains.add( 50);
+ gains.add( 100);
+ gains.add( 500);
+ gains.add( 1000);
+
+
+ update();
+}
+
+FPGAchannelList::~FPGAchannelList()
+{
+
+}
+
+void FPGAchannelList::paint(Graphics& g)
+{
+}
+
+void FPGAchannelList::buttonClicked(Button *btn)
+{
+ if (btn == impedanceButton)
+ {
+ RHD2000Editor *p = (RHD2000Editor*)proc->getEditor();
+ p->measureImpedance();
+ }
+}
+
+void FPGAchannelList::update()
+{
+ // Query processor for number of channels, types, gains, etc... and update the UI
+ channelComponents.clear();
+ staticLabels.clear();
+ StringArray names;
+ Array<float> oldgains;
+ proc->getChannelsInfo(names,types,stream,orig_number,oldgains);
+ int numChannels = names.size();
+
+ // find out which streams are active.
+ bool streamActive[MAX_NUM_DATA_STREAMS+1];
+ bool adcActive = false;
+ int numActiveStreams = 0;
+ int streamColumn[MAX_NUM_DATA_STREAMS+1];
+ int numChannelsPerStream[MAX_NUM_DATA_STREAMS+1];
+
+ for (int k=0;k<MAX_NUM_DATA_STREAMS+1;k++) {
+ numChannelsPerStream[k] = 0;
+ streamActive[k] = false;
+ streamColumn[k] = 0;
+ }
+ int columnWidth =330;
+
+ for (int k=0;k<numChannels;k++)
+ {
+ if (streamActive[stream[k]] == false)
+ {
+ streamColumn[stream[k]] = numActiveStreams*columnWidth;
+ numActiveStreams++;
+ streamActive[stream[k]] = true;
+ }
+ }
+
+ StringArray streamNames;
+ streamNames.add("Port A1");
+ streamNames.add("Port A2");
+ streamNames.add("Port B1");
+ streamNames.add("Port B2");
+ streamNames.add("Port C1");
+ streamNames.add("Port C2");
+ streamNames.add("Port D1");
+ streamNames.add("Port D2");
+ streamNames.add("ADC");
+
+ for (int k=0;k<MAX_NUM_DATA_STREAMS+1;k++)
+ {
+ if (streamActive[k])
+ {
+ Label *lbl = new Label(streamNames[k],streamNames[k]);
+ lbl->setEditable(false);
+ lbl->setBounds(10+streamColumn[k],40,columnWidth, 25);
+ lbl->setJustificationType(juce::Justification::centred);
+ lbl->setColour(Label::textColourId,juce::Colours::white);
+ staticLabels.add(lbl);
+ addAndMakeVisible(lbl);
+
+ }
+
+ }
+
+ // add buttons for all DATA,AUX,channels
+ for (int k=0;k<numChannels;k++)
+ {
+ int channelGainIndex = 1;
+ float ch_gain = oldgains[k]/proc->getDefaultBitVolts();
+ for (int j=0;j<gains.size();j++) {
+ if (fabs(gains[j]-ch_gain) < 1e-3) {
+ channelGainIndex = j;
+ break;
+ }
+ }
+
+ FPGAchannelComponent* comp = new FPGAchannelComponent(this, stream[k],orig_number[k],types[k],channelGainIndex+1, names[k],gains);
+ comp->setBounds(10+streamColumn[stream[k]],70+numChannelsPerStream[stream[k]]*22,columnWidth,22);
+ numChannelsPerStream[stream[k]]++;
+
+ comp->setUserDefinedData(k);
+ addAndMakeVisible(comp);
+ channelComponents.add(comp);
+ }
+
+ StringArray ttlNames;
+ proc->getEventChannelNames(ttlNames);
+ // add buttons for TTL channels
+ for (int k=0;k<ttlNames.size();k++)
+ {
+ FPGAchannelComponent* comp = new FPGAchannelComponent(this,-1,k, EVENT_CHANNEL,-1, ttlNames[k],gains);
+ comp->setBounds( 10+numActiveStreams*columnWidth,70+k*22,columnWidth,22);
+ comp->setUserDefinedData(k);
+ addAndMakeVisible(comp);
+ channelComponents.add(comp);
+ }
+
+ Label *lbl = new Label("TTL Events","TTL Events");
+ lbl->setEditable(false);
+ lbl->setBounds(numActiveStreams*columnWidth,40,columnWidth, 25);
+ lbl->setJustificationType(juce::Justification::centred);
+ lbl->setColour(Label::textColourId,juce::Colours::white);
+ staticLabels.add(lbl);
+ addAndMakeVisible(lbl);
+
+
+}
+
+void FPGAchannelList::disableAll()
+{
+ for (int k=0;k<channelComponents.size();k++)
+ {
+ channelComponents[k]->disableEdit();
+ }
+}
+
+void FPGAchannelList::enableAll()
+{
+ for (int k=0;k<channelComponents.size();k++)
+ {
+ channelComponents[k]->enableEdit();
+ }
+
+}
+
+void FPGAchannelList::setNewGain(int stream, int channel, channelType type, float gain)
+{
+ SourceNode* p = (SourceNode*) proc;
+ p->modifyChannelGain(stream, channel, type, gain, true);
+}
+
+void FPGAchannelList::setNewName(int stream, int channelIndex, channelType t, String newName)
+{
+ proc->modifyChannelName(t, stream, channelIndex, newName, true);
+}
+
+void FPGAchannelList::updateButtons()
+{
+}
+
+int FPGAchannelList::getNumChannels()
+{
+ return 0;
+}
+
+void FPGAchannelList::comboBoxChanged(ComboBox *b)
+{
+ if (b == numberingScheme)
+ {
+ SourceNode* p = (SourceNode* )proc;
+ int scheme = numberingScheme->getSelectedId();
+ if (scheme == 1)
+ {
+ p->setDefaultNamingScheme(scheme);
+ } else if (scheme == 2)
+ {
+ p->setDefaultNamingScheme(scheme);
+ }
+ update();
+
+ }
+}
+
+void FPGAchannelList::updateImpedance(Array<int> streams, Array<int> channels, Array<float> magnitude, Array<float> phase)
+{
+ for (int k=0;k<streams.size();k++)
+ {
+ for (int j=k;j<stream.size();j++)
+ {
+ if (stream[j] == streams[k] && types[j] == DATA_CHANNEL && orig_number[j] == channels[k]) {
+ channelComponents[j]->setImpedanceValues(magnitude[k],phase[k]);
+ break;
+ }
+
+ }
+ }
+
+}
+
+
+/****************************************************/
+FPGAchannelComponent::FPGAchannelComponent(FPGAchannelList* cl, int stream_, int ch, channelType t, int gainIndex_, String N, Array<float> gains_) : gains(gains_), channelList(cl), channel(ch), name(N), stream(stream_), type(t), gainIndex(gainIndex_)
+{
+ Font f = Font("Small Text", 13, Font::plain);
+
+ staticLabel = new Label("Channel","Channel");
+ staticLabel->setFont(f);
+ staticLabel->setEditable(false);
+ addAndMakeVisible(staticLabel);
+
+ editName = new Label(name,name);
+ editName->setFont(f);
+ editName->setEditable(true);
+ editName->setColour(Label::backgroundColourId,juce::Colours::lightgrey);
+ editName->addListener(this);
+ addAndMakeVisible(editName);
+ if (gainIndex > 0)
+ {
+
+ gainComboBox = new ComboBox("Gains");
+ for (int k=0;k<gains.size();k++)
+ {
+ if (gains[k] < 1) {
+ gainComboBox->addItem("x"+String(gains[k],2),k+1);
+ } else
+ {
+ gainComboBox->addItem("x"+String((int)gains[k]),k+1);
+ }
+ }
+ gainComboBox->setSelectedId(gainIndex, sendNotification);
+ gainComboBox->addListener(this);
+ addAndMakeVisible(gainComboBox);
+ } else
+ {
+ gainComboBox = nullptr;
+ }
+
+ if (type == DATA_CHANNEL)
+ {
+ impedance = new Label("Impedance","? Ohm");
+ impedance->setFont(Font("Default", 13, Font::plain));
+ impedance->setEditable(false);
+ addAndMakeVisible(impedance);
+ } else
+ {
+ impedance = nullptr;
+ }
+}
+FPGAchannelComponent::~FPGAchannelComponent()
+{
+
+}
+
+void FPGAchannelComponent::setImpedanceValues(float mag, float phase)
+{
+ if (impedance != nullptr)
+ {
+ if (mag > 10000)
+ impedance->setText(String(mag/1e6,2)+" mOhm, "+String((int)phase) + " deg",juce::NotificationType::dontSendNotification);
+ else if (mag > 1000)
+ impedance->setText(String(mag/1e3,0)+" kOhm, "+String((int)phase) + " deg" ,juce::NotificationType::dontSendNotification);
+ else
+ impedance->setText(String(mag,0)+" Ohm, "+String((int)phase) + " deg" ,juce::NotificationType::dontSendNotification);
+ } else
+ {
+
+ }
+}
+
+void FPGAchannelComponent::comboBoxChanged(ComboBox* comboBox)
+{
+ if (comboBox == gainComboBox)
+ {
+ int newGainIndex = gainComboBox->getSelectedId();
+ float mult = gains[newGainIndex-1];
+ float bitvolts = channelList->proc->getDefaultBitVolts();
+ channelList->setNewGain(stream,channel,type, mult*bitvolts);
+ }
+}
+void FPGAchannelComponent::labelTextChanged(Label* lbl)
+{
+ // channel name change
+ String newName = lbl->getText();
+ channelList->setNewName(stream,channel, type, newName);
+}
+
+void FPGAchannelComponent::disableEdit()
+{
+ editName->setEnabled(false);
+}
+
+void FPGAchannelComponent::enableEdit()
+{
+ editName->setEnabled(true);
+}
+
+void FPGAchannelComponent::buttonClicked(Button *btn)
+{
+}
+
+void FPGAchannelComponent::setUserDefinedData(int d)
+{
+}
+
+int FPGAchannelComponent::getUserDefinedData()
+{
+ return 0;
+}
+
+void FPGAchannelComponent::resized()
+{
+ editName->setBounds(0,0,90,20);
+ if (gainComboBox != nullptr)
+ {
+ gainComboBox->setBounds(100,0,70,20);
+ }
+ if (impedance != nullptr)
+ {
+ impedance->setBounds(180,0,130,20);
+ }
+
+}
+
+
+
+/**********************************************/
+
+FPGAcanvas::FPGAcanvas(GenericProcessor* n) : processor(n)
+{
+
+ channelsViewport = new Viewport();
+ channelList = new FPGAchannelList(processor, channelsViewport, this);
+ channelsViewport->setViewedComponent(channelList, false);
+ channelsViewport->setScrollBarsShown(true, true);
+ addAndMakeVisible(channelsViewport);
+
+ resized();
+ update();
+}
+
+FPGAcanvas::~FPGAcanvas()
+{
+}
+
+void FPGAcanvas::setParameter(int x, float f)
+{
+
+}
+
+void FPGAcanvas::setParameter(int a, int b, int c, float d)
+{
+}
+
+void FPGAcanvas::paint(Graphics& g)
+{
+ g.fillAll(Colours::grey);
+
+}
+
+void FPGAcanvas::refresh()
+{
+ repaint();
+}
+
+void FPGAcanvas::refreshState()
+{
+ resized();
+}
+
+
+void FPGAcanvas::beginAnimation()
+{
+}
+
+void FPGAcanvas::endAnimation()
+{
+}
+
+void FPGAcanvas::update()
+{
+ // create channel buttons (name, gain, recording, impedance, ... ?)
+ channelList->update();
+}
+
+void FPGAcanvas::resized()
+{
+ int screenWidth = getWidth();
+ int screenHeight = getHeight();
+
+ int scrollBarThickness = channelsViewport->getScrollBarThickness();
+ int numChannels = 35; // max channels per stream? (32+3)*2
+
+ channelsViewport->setBounds(0,0,getWidth(),getHeight());
+ channelList->setBounds(0,0,getWidth()-scrollBarThickness, 200+22*numChannels);
+}
+
+void FPGAcanvas::buttonClicked(Button* button)
+{
+}
+
+void FPGAcanvas::updateImpedance(Array<int> streams, Array<int> channels, Array<float> magnitude, Array<float> phase)
+{
+ channelList->updateImpedance(streams, channels, magnitude, phase);
+}
-#include "../DataThreads/RHD2000Thread.h"
+/***********************************************************************/
RHD2000Editor::RHD2000Editor(GenericProcessor* parentNode,
RHD2000Thread* board_,
- bool useDefaultParameterEditors
- )
-: GenericEditor(parentNode, useDefaultParameterEditors), board(board_)
+ bool useDefaultParameterEditors
+ )
+ : VisualizerEditor(parentNode, useDefaultParameterEditors), board(board_)
{
- desiredWidth = 260;
-
+ canvas = nullptr;
+ desiredWidth = 330;
+ tabText = "FPGA";
+
// add headstage-specific controls (currently just an enable/disable button)
for (int i = 0; i < 4; i++)
{
@@ -91,14 +537,11 @@ RHD2000Editor::RHD2000Editor(GenericProcessor* parentNode,
if (i == 0)
{
button->setTooltip("Audio monitor left channel");
- }
- else
- {
+ } else {
button->setTooltip("Audio monitor right channel");
}
}
-
audioLabel = new Label("audio label", "Audio out");
audioLabel->setBounds(180,25,75,15);
audioLabel->setFont(Font("Small Text", 10, Font::plain));
@@ -117,7 +560,7 @@ RHD2000Editor::RHD2000Editor(GenericProcessor* parentNode,
adcButton->addListener(this);
adcButton->setClickingTogglesState(true);
adcButton->setTooltip("Enable/disable ADC channels");
- addAndMakeVisible(adcButton);
+ addAndMakeVisible(adcButton);
// add DSP Offset Button
dspoffsetButton = new UtilityButton("DSP", Font("Very Small Text", 13, Font::plain));
@@ -132,8 +575,52 @@ RHD2000Editor::RHD2000Editor(GenericProcessor* parentNode,
// add DSP Frequency Selection field
dspInterface = new DSPInterface(board, this);
addAndMakeVisible(dspInterface);
- dspInterface->setBounds(110, 108, 80, 50);
+ dspInterface->setBounds(110, 108, 80, 50);
+
+ ttlSettleLabel = new Label("TTL Settle","TTL Settle");
+ ttlSettleLabel->setFont( Font("Small Text", 11, Font::plain));
+ ttlSettleLabel->setBounds(245,80,100,20);
+ ttlSettleLabel->setColour(Label::textColourId, Colours::darkgrey);
+ addAndMakeVisible(ttlSettleLabel);
+
+ ttlSettleCombo = new ComboBox("FastSettleComboBox");
+ ttlSettleCombo->setBounds(250,100,60,18);
+ ttlSettleCombo->addListener(this);
+ ttlSettleCombo->addItem("-",1);
+ for (int k=0; k<8; k++)
+ {
+ ttlSettleCombo->addItem("TTL"+String(1+k),2+k);
+ }
+ ttlSettleCombo->setSelectedId(1, sendNotification);
+ addAndMakeVisible(ttlSettleCombo);
+
+ dacTTLButton = new UtilityButton("DAC TTL", Font("Small Text", 13, Font::plain));
+ dacTTLButton->setRadius(3.0f);
+ dacTTLButton->setBounds(250,25,65,18);
+ dacTTLButton->addListener(this);
+ dacTTLButton->setClickingTogglesState(true);
+ dacTTLButton->setTooltip("Enable/disable DAC Threshold TTL Output");
+ addAndMakeVisible(dacTTLButton);
+
+ dacHPFlabel = new Label("DAC HPF","DAC HPF");
+ dacHPFlabel->setFont( Font("Small Text", 11, Font::plain));
+ dacHPFlabel->setBounds(250,42,100,20);
+ dacHPFlabel->setColour(Label::textColourId, Colours::darkgrey);
+ addAndMakeVisible(dacHPFlabel);
+
+ dacHPFcombo = new ComboBox("dacHPFCombo");
+ dacHPFcombo->setBounds(250,60,60,18);
+ dacHPFcombo->addListener(this);
+ dacHPFcombo->addItem("OFF",1);
+ int HPFvalues[10] = {50,100,200,300,400,500,600,700,800,900};
+ for (int k=0; k<10; k++)
+ {
+ dacHPFcombo->addItem(String(HPFvalues[k])+" Hz",2+k);
+ }
+ dacHPFcombo->setSelectedId(1, sendNotification);
+ addAndMakeVisible(dacHPFcombo);
+
}
RHD2000Editor::~RHD2000Editor()
@@ -146,9 +633,46 @@ void RHD2000Editor::scanPorts()
rescanButton->triggerClick();
}
+void RHD2000Editor::measureImpedance()
+{
+ Array<int> stream, channel;
+ Array<float> magnitude, phase;
+ board->runImpedanceTest(stream,channel,magnitude,phase);
+
+ // update components...
+ canvas->updateImpedance(stream,channel,magnitude,phase);
+}
+
+void RHD2000Editor::comboBoxChanged(ComboBox* comboBox)
+{
+ if (comboBox == ttlSettleCombo)
+ {
+ int selectedChannel = ttlSettleCombo->getSelectedId();
+ if (selectedChannel == 1)
+ {
+ board->setFastTTLSettle(false,0);
+ } else
+ {
+ board->setFastTTLSettle(true,selectedChannel-2);
+ }
+ } else if (comboBox == dacHPFcombo)
+ {
+ int selection = dacHPFcombo->getSelectedId();
+ if (selection == 1)
+ {
+ board->setDAChpf(100,false);
+ } else
+ {
+ int HPFvalues[10] = {50,100,200,300,400,500,600,700,800,900};
+ board->setDAChpf(HPFvalues[selection-2],true);
+ }
+ }
+}
+
+
void RHD2000Editor::buttonEvent(Button* button)
{
-
+ VisualizerEditor::buttonEvent(button);
if (button == rescanButton && !acquisitionIsActive)
{
board->scanPorts();
@@ -156,8 +680,8 @@ void RHD2000Editor::buttonEvent(Button* button)
for (int i = 0; i < 4; i++)
{
headstageOptionsInterfaces[i]->checkEnabledState();
- }
-
+ }
+ board->updateChannelNames();
}
else if (button == electrodeButtons[0])
{
@@ -170,7 +694,11 @@ void RHD2000Editor::buttonEvent(Button* button)
else if (button == adcButton && !acquisitionIsActive)
{
board->enableAdcs(button->getToggleState());
+ board->updateChannelNames();
getEditorViewport()->makeEditorVisible(this, false, true);
+ } else if (button == dacTTLButton)
+ {
+ board->setTTLoutputMode(dacTTLButton->getToggleState());
}
else if (button == dspoffsetButton && !acquisitionIsActive)
{
@@ -189,8 +717,8 @@ void RHD2000Editor::channelChanged(int chan)
{
electrodeButtons[i]->setChannelNum(chan);
electrodeButtons[i]->repaint();
-
- board->assignAudioOut(i, chan-1);
+ board->assignAudioOut(i, chan);
+
}
}
}
@@ -201,11 +729,11 @@ void RHD2000Editor::startAcquisition()
channelSelector->startAcquisition();
rescanButton->setEnabledState(false);
- adcButton->setEnabledState(false);
+ adcButton->setEnabledState(false);
dspoffsetButton-> setEnabledState(false);
-
acquisitionIsActive = true;
-
+ if (canvas !=nullptr)
+ canvas->channelList->setEnabled(false);
}
void RHD2000Editor::stopAcquisition()
@@ -218,17 +746,29 @@ void RHD2000Editor::stopAcquisition()
dspoffsetButton-> setEnabledState(true);
acquisitionIsActive = false;
-
+ if (canvas != nullptr)
+ canvas->channelList->setEnabled(true);
+ // canvas->channelList->setEnabled(true);
}
void RHD2000Editor::saveCustomParameters(XmlElement* xml)
{
- xml->setAttribute("SampleRate", sampleRateInterface->getSelectedId());
- xml->setAttribute("LowCut", bandwidthInterface->getLowerBandwidth());
- xml->setAttribute("HighCut", bandwidthInterface->getUpperBandwidth());
- xml->setAttribute("ADCsOn", adcButton->getToggleState());
- xml->setAttribute("DSPOffset", dspoffsetButton->getToggleState());
- xml->setAttribute("DSPCutoffFreq", dspInterface->getDspCutoffFreq());
+ xml->setAttribute("SampleRate", sampleRateInterface->getSelectedId());
+ xml->setAttribute("LowCut", bandwidthInterface->getLowerBandwidth());
+ xml->setAttribute("HighCut", bandwidthInterface->getUpperBandwidth());
+ xml->setAttribute("ADCsOn", adcButton->getToggleState());
+ xml->setAttribute("SampleRate", sampleRateInterface->getSelectedId());
+ xml->setAttribute("LowCut", bandwidthInterface->getLowerBandwidth());
+ xml->setAttribute("HighCut", bandwidthInterface->getUpperBandwidth());
+ xml->setAttribute("ADCsOn", adcButton->getToggleState());
+ xml->setAttribute("AudioOutputL", electrodeButtons[0]->getChannelNum());
+ xml->setAttribute("AudioOutputR", electrodeButtons[1]->getChannelNum());
+ xml->setAttribute("NoiseSlicer", audioInterface->getNoiseSlicerLevel());
+ xml->setAttribute("TTLFastSettle", ttlSettleCombo->getSelectedId());
+ xml->setAttribute("DAC_TTL", dacTTLButton->getToggleState());
+ xml->setAttribute("DAC_HPF", dacHPFcombo->getSelectedId());
+ xml->setAttribute("DSPOffset", dspoffsetButton->getToggleState());
+ xml->setAttribute("DSPCutoffFreq", dspInterface->getDspCutoffFreq());
}
void RHD2000Editor::loadCustomParameters(XmlElement* xml)
@@ -238,11 +778,28 @@ void RHD2000Editor::loadCustomParameters(XmlElement* xml)
bandwidthInterface->setLowerBandwidth(xml->getDoubleAttribute("LowCut"));
bandwidthInterface->setUpperBandwidth(xml->getDoubleAttribute("HighCut"));
adcButton->setToggleState(xml->getBoolAttribute("ADCsOn"), sendNotification);
+ electrodeButtons[0]->setChannelNum(xml->getIntAttribute("AudioOutputL"));
+ board->assignAudioOut(0, xml->getIntAttribute("AudioOutputL"));
+ electrodeButtons[1]->setChannelNum(xml->getIntAttribute("AudioOutputR"));
+ board->assignAudioOut(1, xml->getIntAttribute("AudioOutputR"));
+ audioInterface->setNoiseSlicerLevel(xml->getIntAttribute("NoiseSlicer"));
+ ttlSettleCombo->setSelectedId(xml->getIntAttribute("TTLFastSettle"));
+ dacTTLButton->setToggleState(xml->getBoolAttribute("DAC_TTL"), sendNotification);
+ dacHPFcombo->setSelectedId(xml->getIntAttribute("DAC_HPF"));
dspoffsetButton->setToggleState(xml->getBoolAttribute("DSPOffset"), sendNotification);
dspInterface->setDspCutoffFreq(xml->getDoubleAttribute("DSPCutoffFreq"));
}
+Visualizer* RHD2000Editor::createNewCanvas()
+{
+ GenericProcessor* processor = (GenericProcessor*) getProcessor();
+ canvas= new FPGAcanvas(processor);
+ //ActionListener* listener = (ActionListener*) canvas;
+ //getUIComponent()->registerAnimatedComponent(listener);
+ return canvas;
+}
+
// Bandwidth Options --------------------------------------------------------------------
BandwidthInterface::BandwidthInterface(RHD2000Thread* board_,
@@ -358,7 +915,6 @@ void BandwidthInterface::setUpperBandwidth(double value)
upperBandwidthSelection->setText(String(round(actualUpperBandwidth*10.f)/10.f), dontSendNotification);
}
-
double BandwidthInterface::getLowerBandwidth()
{
return actualLowerBandwidth;
@@ -578,7 +1134,10 @@ void HeadstageOptionsInterface::buttonClicked(Button* button)
hsButton1->setLabel(String(channelsOnHs1));
board->setNumChannels(hsNumber1, channelsOnHs1);
-
+
+ board->updateChannelNames();
+ editor->updateSettings();
+
}
else if (button == hsButton2)
{
@@ -589,6 +1148,8 @@ void HeadstageOptionsInterface::buttonClicked(Button* button)
hsButton2->setLabel(String(channelsOnHs2));
board->setNumChannels(hsNumber2, channelsOnHs2);
+ board->updateChannelNames();
+ editor->updateSettings();
}
@@ -619,7 +1180,7 @@ void HeadstageOptionsInterface::paint(Graphics& g)
// (Direct OpalKelly) Audio Options --------------------------------------------------------------------
AudioInterface::AudioInterface(RHD2000Thread* board_,
- RHD2000Editor* editor_) :
+ RHD2000Editor* editor_) :
board(board_), editor(editor_)
{
@@ -671,8 +1232,7 @@ void AudioInterface::labelTextChanged(Label* label)
}
}
- else
- {
+ else {
Value val = label->getTextValue();
int requestedValue = int(val.getValue()); // Note that it might be nice to translate to actual uV levels (16*value)
if (requestedValue < 0 || requestedValue > 127)
@@ -706,7 +1266,7 @@ void AudioInterface::paint(Graphics& g)
g.drawText(name, 0, 0, 200, 15, Justification::left, false);
g.drawText("Level: ", 0, 10, 200, 20, Justification::left, false);
-
+
}
@@ -731,7 +1291,7 @@ board(board_), editor(editor_)
DSPInterface::~DSPInterface()
{
-
+
}
diff --git a/Source/Processors/Editors/RHD2000Editor.h b/Source/Processors/DataThreads/RHD2000Editor.h
similarity index 55%
rename from Source/Processors/Editors/RHD2000Editor.h
rename to Source/Processors/DataThreads/RHD2000Editor.h
index 706d6e18be2aebccea0c1154c8f2731d68441bef..73e75da1332a679dfce14b74522b3d2e88e4dc6a 100644
--- a/Source/Processors/Editors/RHD2000Editor.h
+++ b/Source/Processors/DataThreads/RHD2000Editor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,9 +25,10 @@
#define __RHD2000EDITOR_H_2AD3C591__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/VisualizerEditor.h"
-#include "ElectrodeButtons.h" // for ElectrodeButton
+#include "../Editors/ElectrodeButtons.h" // for ElectrodeButton
class HeadstageOptionsInterface;
class SampleRateInterface;
@@ -45,9 +46,116 @@ class UtilityButton;
@see SourceNode
*/
+class SourceNode;
+class FPGAchannelComponent;
+class RHD2000Editor;
+class FPGAcanvas;
-class RHD2000Editor : public GenericEditor
+class FPGAchannelList : public Component,
+ public AccessClass, Button::Listener, ComboBox::Listener
+{
+public:
+
+ FPGAchannelList(GenericProcessor* proc, Viewport *p, FPGAcanvas*c);
+ ~FPGAchannelList();
+ void setNewName(int stream, int channelIndex, channelType t, String newName);
+ void setNewGain(int stream, int channel,channelType t, float gain);
+ void disableAll();
+ void enableAll();
+ void paint(Graphics& g);
+ void buttonClicked(Button *btn);
+ void update();
+ void updateButtons();
+ int getNumChannels();
+ void comboBoxChanged(ComboBox *b);
+ void updateImpedance(Array<int> streams, Array<int> channels, Array<float> magnitude, Array<float> phase);
+ GenericProcessor* proc;
+
+private:
+ Array<float> gains;
+ Array<channelType> types;
+ Array<int> stream;
+ Array<int> orig_number;
+
+ Viewport *viewport;
+ FPGAcanvas *canvas;
+ ScopedPointer<UtilityButton> impedanceButton;
+ ScopedPointer<ComboBox> numberingScheme;
+ ScopedPointer<Label> numberingSchemeLabel;
+ OwnedArray<Label> staticLabels;
+ OwnedArray<FPGAchannelComponent> channelComponents;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(FPGAchannelList);
+};
+
+
+class FPGAchannelComponent : public Component, public AccessClass, Button::Listener, public ComboBox::Listener, public Label::Listener
+{
+public:
+ FPGAchannelComponent(FPGAchannelList* cl,int stream, int ch, channelType t, int gainIndex_, String name_, Array<float> gains_);
+ ~FPGAchannelComponent();
+ Colour getDefaultColor(int ID);
+ void setImpedanceValues(float mag, float phase);
+ void disableEdit();
+ void enableEdit();
+
+
+ void setEnabledState(bool);
+ bool getEnabledState()
+ {
+ return isEnabled;
+ }
+ void buttonClicked(Button *btn);
+ void setUserDefinedData(int d);
+ int getUserDefinedData();
+ void comboBoxChanged(ComboBox* comboBox);
+ void labelTextChanged(Label* lbl);
+
+ void resized();
+private:
+ Array<float> gains;
+ FPGAchannelList* channelList;
+ ScopedPointer<Label> staticLabel, editName, impedance;
+ ScopedPointer<ComboBox> gainComboBox;
+ int channel;
+ String name;
+ int stream;
+ channelType type;
+ int gainIndex;
+ int userDefinedData;
+ Font font;
+ bool isEnabled;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(FPGAchannelComponent);
+};
+
+
+class FPGAcanvas : public Visualizer, public Button::Listener
+{
+public:
+ FPGAcanvas(GenericProcessor* n);
+ ~FPGAcanvas();
+
+ void paint(Graphics& g);
+
+ void refresh();
+
+ void beginAnimation();
+ void endAnimation();
+
+ void refreshState();
+ void update();
+ void setParameter(int, float) ;
+ void setParameter(int, int, int, float) ;
+ void updateImpedance(Array<int> streams, Array<int> channels, Array<float> magnitude, Array<float> phase);
+
+ void resized();
+ void buttonClicked(Button* button);
+ Viewport* channelsViewport;
+ GenericProcessor* processor;
+ ScopedPointer<FPGAchannelList> channelList;
+};
+
+class RHD2000Editor : public VisualizerEditor, public ComboBox::Listener
{
public:
@@ -57,7 +165,8 @@ public:
void buttonEvent(Button* button);
void scanPorts();
-
+ void comboBoxChanged(ComboBox* comboBox);
+
void startAcquisition();
void stopAcquisition();
@@ -65,7 +174,8 @@ public:
void saveCustomParameters(XmlElement* xml);
void loadCustomParameters(XmlElement* xml);
-
+ Visualizer* createNewCanvas(void);
+ void measureImpedance();
private:
OwnedArray<HeadstageOptionsInterface> headstageOptionsInterfaces;
@@ -77,15 +187,17 @@ private:
ScopedPointer<AudioInterface> audioInterface;
- ScopedPointer<UtilityButton> rescanButton;
- ScopedPointer<UtilityButton> adcButton;
+ ScopedPointer<UtilityButton> rescanButton,dacTTLButton;
+ ScopedPointer<UtilityButton> adcButton;
- ScopedPointer<UtilityButton> dspoffsetButton;
+ ScopedPointer<UtilityButton> dspoffsetButton;
+ ScopedPointer<ComboBox> ttlSettleCombo,dacHPFcombo;
- ScopedPointer<Label> audioLabel;
- RHD2000Thread* board;
+ ScopedPointer<Label> audioLabel,ttlSettleLabel,dacHPFlabel ;
+ RHD2000Thread* board;
+ FPGAcanvas *canvas;
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RHD2000Editor);
};
@@ -208,36 +320,36 @@ private:
};
class AudioInterface : public Component,
- public Label::Listener
+public Label::Listener
{
public:
AudioInterface(RHD2000Thread*, RHD2000Editor*);
~AudioInterface();
-
+
void paint(Graphics& g);
void labelTextChanged(Label* te);
-
+
void setNoiseSlicerLevel(int value);
int getNoiseSlicerLevel();
//void setGain(double value);
//double getGain();
-
+
private:
-
+
String name;
-
+
String lastNoiseSlicerString;
String lastGainString;
-
+
RHD2000Thread* board;
RHD2000Editor* editor;
-
+
ScopedPointer<Label> noiseSlicerLevelSelection;
//ScopedPointer<Label> gainSelection;
-
+
int actualNoiseSlicerLevel;
//double actualGain;
-
+
};
diff --git a/Source/Processors/DataThreads/RHD2000Thread.cpp b/Source/Processors/DataThreads/RHD2000Thread.cpp
index a8758331226ad4d832911971887497454103cfd3..e4969c8c4f2b74396b1d16e25766df273dad252b 100644
--- a/Source/Processors/DataThreads/RHD2000Thread.cpp
+++ b/Source/Processors/DataThreads/RHD2000Thread.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "RHD2000Thread.h"
-#include "../SourceNode.h"
+#include "../SourceNode/SourceNode.h"
#if defined(_WIN32)
#define okLIB_NAME "okFrontPanel.dll"
@@ -34,6 +34,25 @@
#define okLIB_NAME "./libokFrontPanel.so"
#define okLIB_EXTENSION "*.so"
#endif
+#define CHIP_ID_RHD2164_B 1000
+
+// Allocates memory for a 3-D array of doubles.
+void allocateDoubleArray3D(std::vector<std::vector<std::vector<double> > >& array3D,
+ int xSize, int ySize, int zSize)
+{
+ int i, j;
+
+ if (xSize == 0) return;
+ array3D.resize(xSize);
+ for (i = 0; i < xSize; ++i)
+ {
+ array3D[i].resize(ySize);
+ for (j = 0; j < ySize; ++j)
+ {
+ array3D[i][j].resize(zSize);
+ }
+ }
+}
RHD2000Thread::RHD2000Thread(SourceNode* sn) : DataThread(sn),
chipRegisters(30000.0f),
@@ -44,6 +63,9 @@ RHD2000Thread::RHD2000Thread(SourceNode* sn) : DataThread(sn),
acquireAdcChannels(false),
acquireAuxChannels(true),
fastSettleEnabled(false),
+ fastTTLSettleEnabled(false),
+ fastSettleTTLChannel(-1),
+ ttlMode(false),
dspEnabled(true),
desiredDspCutoffFreq(0.5f),
desiredUpperBandwidth(7500.0f),
@@ -51,7 +73,7 @@ RHD2000Thread::RHD2000Thread(SourceNode* sn) : DataThread(sn),
boardSampleRate(30000.0f),
savedSampleRateIndex(16),
cableLengthPortA(0.914f), cableLengthPortB(0.914f), cableLengthPortC(0.914f), cableLengthPortD(0.914f), // default is 3 feet (0.914 m),
- audioOutputL(-1), audioOutputR(-1)
+ audioOutputL(-1), audioOutputR(-1) ,numberingScheme(1)
{
evalBoard = new Rhd2000EvalBoard;
dataBlock = new Rhd2000DataBlock(1);
@@ -78,6 +100,10 @@ RHD2000Thread::RHD2000Thread(SourceNode* sn) : DataThread(sn),
libraryFilePath += File::separatorString;
libraryFilePath += okLIB_NAME;
+ dacStream = nullptr;
+ dacChannels = nullptr;
+ dacThresholds = nullptr;
+ dacChannelsToUpdate = nullptr;
if (openBoard(libraryFilePath))
{
@@ -87,13 +113,33 @@ RHD2000Thread::RHD2000Thread(SourceNode* sn) : DataThread(sn),
// automatically find connected headstages
scanPorts(); // things would appear to run more smoothly if this were done after the editor has been created
- if (0)
+ // to perform electrode impedance measurements at very low frequencies.
+ const int maxNumBlocks = 120;
+ int numStreams = 8;
+ allocateDoubleArray3D(amplifierPreFilter, numStreams, 32, SAMPLES_PER_DATA_BLOCK * maxNumBlocks);
+
+ // probably better to do this with a thread, but a timer works for now:
+ // startTimer(10); // initialize the board in the background
+ dacStream = new int[8];
+ dacChannels = new int[8];
+ dacThresholds = new float[8];
+ dacChannelsToUpdate = new bool[8];
+ for (int k = 0; k < 8; k++)
{
- evalBoard->setContinuousRunMode(true);
- evalBoard->run();
+ dacChannelsToUpdate[k] = true;
+ dacStream[k] = 0;
+ setDACthreshold(k, 65534);
}
+ evalBoard->getDacInformation(dacChannels,dacThresholds);
+ setDefaultChannelNamesAndType();
}
+}
+
+void RHD2000Thread::timerCallback()
+{
+
+ stopTimer();
}
@@ -109,17 +155,45 @@ RHD2000Thread::~RHD2000Thread()
}
if (deviceFound)
- {
- evalBoard->flush();
- evalBoard->resetBoard();
evalBoard->resetFpga();
- }
-
deleteAndZero(dataBlock);
+ delete dacStream;
+ delete dacChannels;
+ delete dacThresholds;
+ delete dacChannelsToUpdate;
+
+}
+
+void RHD2000Thread::setDACthreshold(int dacOutput, float threshold)
+{
+ dacThresholds[dacOutput]= threshold;
+ dacChannelsToUpdate[dacOutput] = true;
+ dacOutputShouldChange = true;
+
+ // evalBoard->setDacThresholdVoltage(dacOutput,threshold);
+}
+
+void RHD2000Thread::setDACchannel(int dacOutput, int stream, int channel)
+{
+ dacChannels[dacOutput] = channel;
+ dacStream[dacOutput] = stream;
+ dacChannelsToUpdate[dacOutput] = true;
+ dacOutputShouldChange = true;
+ evalBoard->updateDacAssignment(dacOutput, channel); // doesn't really change anything, but keep things in sync...
}
+Array<int> RHD2000Thread::getDACchannels()
+{
+ Array<int> dacChannels;
+ for (int k=0; k<8; k++)
+ {
+ dacChannels.add(evalBoard->gecDacDataChannel(k));
+ }
+ return dacChannels;
+
+}
bool RHD2000Thread::openBoard(String pathToLibrary)
{
int return_code = evalBoard->open(pathToLibrary.getCharPointer());
@@ -206,6 +280,7 @@ bool RHD2000Thread::uploadBitfile(String bitfilename)
if (fc.browseForFileToOpen())
{
File currentFile = fc.getResult();
+
uploadBitfile(currentFile.getFullPathName()); // call recursively
}
else
@@ -283,13 +358,11 @@ void RHD2000Thread::initializeBoard()
;
}
-
// Read the resulting single data block from the USB interface. We don't
// need to do anything with this, since it was only used for ADC calibration
Rhd2000DataBlock* dataBlock = new Rhd2000DataBlock(evalBoard->getNumEnabledDataStreams());
-
// evalBoard->readDataBlock(dataBlock);
// Now that ADC calibration has been performed, we switch to the command sequence
@@ -322,21 +395,44 @@ void RHD2000Thread::scanPorts()
int delay, stream, id;
//int numChannelsOnPort[4] = {0, 0, 0, 0};
- Array<int> chipId;
+ Rhd2000EvalBoard::BoardDataSource initStreamPorts[8] =
+ {
+ Rhd2000EvalBoard::PortA1,
+ Rhd2000EvalBoard::PortA2,
+ Rhd2000EvalBoard::PortB1,
+ Rhd2000EvalBoard::PortB2,
+ Rhd2000EvalBoard::PortC1,
+ Rhd2000EvalBoard::PortC2,
+ Rhd2000EvalBoard::PortD1,
+ Rhd2000EvalBoard::PortD2
+ };
+
+ Rhd2000EvalBoard::BoardDataSource initStreamDdrPorts[8] =
+ {
+ Rhd2000EvalBoard::PortA1Ddr,
+ Rhd2000EvalBoard::PortA2Ddr,
+ Rhd2000EvalBoard::PortB1Ddr,
+ Rhd2000EvalBoard::PortB2Ddr,
+ Rhd2000EvalBoard::PortC1Ddr,
+ Rhd2000EvalBoard::PortC2Ddr,
+ Rhd2000EvalBoard::PortD1Ddr,
+ Rhd2000EvalBoard::PortD2Ddr
+ };
+
chipId.insertMultiple(0,-1,8);
setSampleRate(16, true); // set to 30 kHz temporarily
// Enable all data streams, and set sources to cover one or two chips
// on Ports A-D.
- evalBoard->setDataSource(0, Rhd2000EvalBoard::PortA1);
- evalBoard->setDataSource(1, Rhd2000EvalBoard::PortA2);
- evalBoard->setDataSource(2, Rhd2000EvalBoard::PortB1);
- evalBoard->setDataSource(3, Rhd2000EvalBoard::PortB2);
- evalBoard->setDataSource(4, Rhd2000EvalBoard::PortC1);
- evalBoard->setDataSource(5, Rhd2000EvalBoard::PortC2);
- evalBoard->setDataSource(6, Rhd2000EvalBoard::PortD1);
- evalBoard->setDataSource(7, Rhd2000EvalBoard::PortD2);
+ evalBoard->setDataSource(0, initStreamPorts[0]);
+ evalBoard->setDataSource(1, initStreamPorts[1]);
+ evalBoard->setDataSource(2, initStreamPorts[2]);
+ evalBoard->setDataSource(3, initStreamPorts[3]);
+ evalBoard->setDataSource(4, initStreamPorts[4]);
+ evalBoard->setDataSource(5, initStreamPorts[5]);
+ evalBoard->setDataSource(6, initStreamPorts[6]);
+ evalBoard->setDataSource(7, initStreamPorts[7]);
evalBoard->enableDataStream(0, true);
evalBoard->enableDataStream(1, true);
@@ -405,13 +501,13 @@ void RHD2000Thread::scanPorts()
// Record delay settings that yield good communication with the chip.
for (stream = 0; stream < MAX_NUM_DATA_STREAMS; ++stream)//MAX_NUM_DATA_STREAMS; ++stream)
{
- std::cout << "Stream number " << stream << ", delay = " << delay << std::endl;
+ // std::cout << "Stream number " << stream << ", delay = " << delay << std::endl;
id = deviceId(dataBlock, stream);
if (id > 0) // 1 = RHD2132, 2 = RHD2216
{
- std::cout << "Device ID found: " << id << std::endl;
+ // std::cout << "Device ID found: " << id << std::endl;
sumGoodDelays.set(stream,sumGoodDelays[stream] + 1);
@@ -442,7 +538,18 @@ void RHD2000Thread::scanPorts()
if (chipId[stream] > 0)
{
//std::cout << "Enabling headstage on stream " << stream << std::endl;
- enableHeadstage(stream, true);
+ if (chipId[stream] == 4) //RHD2164
+ {
+ //We just add it like a second headstage, allowing only one RHD2164 per channel
+ //This would need to change
+ evalBoard->setDataSource(stream+1,initStreamDdrPorts[stream]);
+ enableHeadstage(stream,true);
+ enableHeadstage(stream+1,true);
+ chipId.set(stream+1,CHIP_ID_RHD2164_B);
+ stream++;
+ }
+ else
+ enableHeadstage(stream, true);
}
else
{
@@ -533,101 +640,254 @@ bool RHD2000Thread::isAcquisitionActive()
void RHD2000Thread::setNumChannels(int hsNum, int numChannels)
{
- numChannelsPerDataStream.set(hsNum, numChannels);
+ if (numChannelsPerDataStream[hsNum] > 0)
+ numChannelsPerDataStream.set(hsNum, numChannels);
}
-int RHD2000Thread::getNumChannels()
-{
- numChannels = 0;
+int RHD2000Thread::getNumADCchannels()
+{
+ if (acquireAdcChannels)
+ return 8;
+ else
+ return 0;
+}
- for (int i = 0; i < MAX_NUM_DATA_STREAMS; i++)
+void RHD2000Thread::getEventChannelNames(StringArray& Names)
+{
+ Names.clear();
+ for (int k=0; k<8; k++)
{
+ Names.add("TTL"+String(k+1));
+ }
+}
- if (numChannelsPerDataStream[i] > 0)
- {
- numChannels += numChannelsPerDataStream[i];
- numChannels += 3; // to account for aux inputs
- }
+void RHD2000Thread::getChannelsInfo(StringArray& Names_, Array<channelType>& type_, Array<int>& stream_, Array<int>& originalChannelNumber_,Array<float>& gains_)
+{
+ Names_ = Names;
+ type_ = type;
+ stream_ = stream;
+ originalChannelNumber_ = originalChannelNumber;
+ gains_ = gains;
+}
+void RHD2000Thread::updateChannelNames()
+{
+ setDefaultChannelNamesAndType();
+}
- /*
- if (chipRegisters->adcAux1En){ // no public function to read these? fix this in some way
- numChannels += 1;
- }
- if (chipRegisters->adcAux2En){
- numChannels += 1;
- }
- if (chipRegisters->adcAux3En){
- numChannels += 1;
+/* go over the old names and tests whether this particular channel name was changed.
+if so, return the old name */
+bool RHD2000Thread::channelModified(channelType t, int str, int ch, String& oldName, float& oldGain, int& index)
+{
+ for (int k=0; k<oldNames.size(); k++)
+ {
+ if (oldType[k] == t && oldStream[k] == str && oldChannelNumber[k] == ch)
+ {
+ oldName = oldNames[k];
+ oldGain = oldGains[k];
+ index = k;
+ return true;
}
- */
}
+ return false;
+}
- if (acquireAdcChannels)
+int RHD2000Thread::modifyChannelName(channelType t, int str, int ch, String newName)
+{
+ String dummy;
+ float dummyFloat;
+ int index;
+ if (channelModified(t, str, ch, dummy, dummyFloat, index))
{
- numChannels += 8; // add 8 channels for the ADCs
+ oldNames.set(index, newName);
}
-
- if (numChannels > 0)
- return numChannels;
else
- return 1; // to prevent crashing with 0 channels
+ {
+ oldNames.add(newName);
+ oldType.add(t);
+ oldStream.add(str);
+ oldChannelNumber.add(ch);
+ oldGains.add(dummyFloat);
+ }
+
+ for (int k=0; k<Names.size(); k++)
+ {
+ if (type[k] == t && stream[k] == str && originalChannelNumber[k] == ch)
+ {
+ Names.set(k,newName);
+ return k;
+ }
+ }
+ return -1;
}
-void RHD2000Thread::updateChannelNames()
+int RHD2000Thread::modifyChannelGain(channelType t, int str, int ch, float gain)
{
-
- int chNum = -1;
-
- for (int i = 0; i < MAX_NUM_DATA_STREAMS; i++)
+ String dummy;
+ float dummyFloat;
+ int index;
+ if (channelModified(t, str, ch, dummy, dummyFloat, index))
{
+ oldGains.set(index, gain);
+ }
+ else
+ {
+ oldNames.add(dummy);
+ oldType.add(t);
+ oldStream.add(str);
+ oldChannelNumber.add(ch);
+ oldGains.add(gain);
+ }
- for (int j = 0; j < numChannelsPerDataStream[i]; j++)
+ for (int k=0; k<Names.size(); k++)
+ {
+ if (type[k] == t && stream[k] == str && originalChannelNumber[k] == ch)
{
- chNum++;
-
- sn->channels[chNum]->setName(String(chNum));
+ gains.set(k,gain);
+ return k;
}
}
+ return -1;
+}
+
+void RHD2000Thread::setDefaultNamingScheme(int scheme)
+{
+ oldNames.clear();
+ oldType.clear();
+ oldStream.clear();
+ oldGains.clear();
+ oldChannelNumber.clear();
+ numberingScheme = scheme;
+ setDefaultChannelNamesAndType();
+}
- if (acquireAuxChannels)
+/* This will give default names & gains to channels, unless they were manually modified by the user
+ In that case, the query channelModified, will return the values that need to be put */
+void RHD2000Thread::setDefaultChannelNamesAndType()
+{
+ Names.clear();
+ type.clear();
+ stream.clear();
+ gains.clear();
+ originalChannelNumber.clear();
+ int aux_counter=1;
+ int data_counter = 1;
+ String oldName;
+ int dummy;
+ float oldGain;
+ StringArray stream_prefix;
+ stream_prefix.add("A1");
+ stream_prefix.add("A2");
+ stream_prefix.add("B1");
+ stream_prefix.add("B2");
+ stream_prefix.add("C1");
+ stream_prefix.add("C2");
+ stream_prefix.add("D1");
+ stream_prefix.add("D2");
+ for (int i = 0; i < MAX_NUM_DATA_STREAMS; i++)
{
- for (int i = 0; i < MAX_NUM_DATA_STREAMS; i++)
+ if (numChannelsPerDataStream[i] > 0)
{
+ for (int k=0; k<numChannelsPerDataStream[i]; k++)
+ {
+ if (channelModified(DATA_CHANNEL,i,k, oldName,oldGain,dummy))
+ {
+ Names.add(oldName);
+ gains.add(oldGain);
+ data_counter++;
+ }
+ else
+ {
+ if (numberingScheme == 1)
+ Names.add("CH"+String(data_counter++));
+ else
+ Names.add("CH_"+stream_prefix[i]+"_"+String(1+k));
- for (int j = 0; j < 3; j++)
+ gains.add(getBitVolts());
+ }
+
+ type.add(DATA_CHANNEL);
+ stream.add(i);
+ originalChannelNumber.add(k);
+
+ }
+ for (int k=0; k<3; k++)
{
+ if (channelModified(AUX_CHANNEL,i,numChannelsPerDataStream[i]+k, oldName,oldGain, dummy))
+ {
+ Names.add(oldName);
+ gains.add(oldGain);
- chNum++;
+ aux_counter++;
+ }
+ else
+ {
+ if (numberingScheme == 1)
+ Names.add("AUX"+String(aux_counter++));
+ else
+ Names.add("AUX_"+stream_prefix[i]+"_"+String(1+k));
+
+ gains.add(getBitVolts());
- String chName = "AUX";
- chName += (j+1);
+ }
+ type.add(AUX_CHANNEL);
+ stream.add(i);
+ originalChannelNumber.add(numChannelsPerDataStream[i]+k);
- // this is causing a seg fault for some reason:
- // sn->channels[chNum]->setName(chName);
}
}
}
-
if (acquireAdcChannels)
{
- for (int j = 0; j < 8; j++)
+ for (int k=0; k<8; k++)
{
- chNum++;
+ if (channelModified(ADC_CHANNEL,MAX_NUM_DATA_STREAMS,k, oldName,oldGain,dummy))
+ {
+ Names.add(oldName);
+ gains.add(oldGain);
+ }
+ else
+ {
+ Names.add("ADC"+String(k+1));
+ gains.add(getBitVolts());
+ }
+ type.add(ADC_CHANNEL);
+ stream.add(MAX_NUM_DATA_STREAMS);
+ originalChannelNumber.add(k);
+
+ }
+ }
- String chName = "ADC";
- chName += (j+1);
+}
- // sn->channels[chNum]->setName(chName);
+int RHD2000Thread::getNumChannels()
+{
+ numChannels = 0;
+ for (int i = 0; i < MAX_NUM_DATA_STREAMS; i++)
+ {
+
+ if (numChannelsPerDataStream[i] > 0)
+ {
+ numChannels += numChannelsPerDataStream[i];
+ numChannels += 3; // to account for aux inputs
}
}
+ if (acquireAdcChannels)
+ {
+ numChannels += 8; // add 8 channels for the ADCs
+ }
+ if (numChannels > 0)
+ return numChannels;
+ else
+ return 1; // to prevent crashing with 0 channels
}
+
int RHD2000Thread::getNumEventChannels()
{
return 16; // 8 inputs, 8 outputs
@@ -662,7 +922,7 @@ double RHD2000Thread::setLowerBandwidth(double lower)
return actualLowerBandwidth;
}
-
+
double RHD2000Thread::setDspCutoffFreq(double freq)
{
@@ -683,13 +943,34 @@ void RHD2000Thread::setDSPOffset(bool state)
{
dspEnabled = state;
updateRegisters();
-
+
+void RHD2000Thread::setTTLoutputMode(bool state)
+{
+ ttlMode = state;
+ dacOutputShouldChange = true;
+
+}
+
+void RHD2000Thread::setDAChpf(float cutoff, bool enabled)
+{
+ dacOutputShouldChange = true;
+ desiredDAChpf = cutoff;
+ desiredDAChpfState = enabled;
+}
+
+void RHD2000Thread::setFastTTLSettle(bool state, int channel)
+{
+ fastTTLSettleEnabled = state;
+ fastSettleTTLChannel = channel;
+ dacOutputShouldChange = true;
}
int RHD2000Thread::setNoiseSlicerLevel(int level)
{
+
desiredNoiseSlicerLevel = level;
- evalBoard->setAudioNoiseSuppress(desiredNoiseSlicerLevel);
+ if (deviceFound)
+ evalBoard->setAudioNoiseSuppress(desiredNoiseSlicerLevel);
// Level has been checked once before this and then is checked again in setAudioNoiseSuppress.
// This may be overkill - maybe API should change so that the final function returns the value?
@@ -749,23 +1030,24 @@ bool RHD2000Thread::isHeadstageEnabled(int hsNum)
void RHD2000Thread::assignAudioOut(int dacChannel, int dataChannel)
{
-
- if (dacChannel == 0)
- {
- audioOutputR = dataChannel;
-
-
- }
- else if (dacChannel == 1)
+ if (deviceFound)
{
- audioOutputL = dataChannel;
+ if (dacChannel == 0)
+ {
+ audioOutputR = dataChannel;
+ dacChannels[0] = dataChannel;
+ }
+ else if (dacChannel == 1)
+ {
+ audioOutputL = dataChannel;
+ dacChannels[1] = dataChannel;
+ }
+ dacOutputShouldChange = true; // set a flag and take care of setting wires
+ // during the updateBuffer() method
+ // to avoid problems
}
- dacOutputShouldChange = true; // set a flag and take care of setting wires
- // during the updateBuffer() method
- // to avoid problems
-
}
void RHD2000Thread::enableAdcs(bool t)
@@ -774,9 +1056,10 @@ void RHD2000Thread::enableAdcs(bool t)
acquireAdcChannels = t;
dataBuffer->resize(getNumChannels(), 10000);
-
+ updateChannelNames();
}
+
void RHD2000Thread::setSampleRate(int sampleRateIndex, bool isTemporary)
{
@@ -959,16 +1242,16 @@ void RHD2000Thread::updateRegisters()
evalBoard->selectAuxCommandLength(Rhd2000EvalBoard::AuxCmd3, 0,
commandSequenceLength - 1);
+
chipRegisters.setFastSettle(true);
+
commandSequenceLength = chipRegisters.createCommandListRegisterConfig(commandList, false);
// Upload version with fast settle enabled to AuxCmd3 RAM Bank 2.
evalBoard->uploadCommandList(commandList, Rhd2000EvalBoard::AuxCmd3, 2);
evalBoard->selectAuxCommandLength(Rhd2000EvalBoard::AuxCmd3, 0,
commandSequenceLength - 1);
- chipRegisters.setFastSettle(false);
-
-
+ chipRegisters.setFastSettle(false);
evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortA, Rhd2000EvalBoard::AuxCmd3,
fastSettleEnabled ? 2 : 1);
evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortB, Rhd2000EvalBoard::AuxCmd3,
@@ -1047,7 +1330,7 @@ bool RHD2000Thread::startAcquisition()
bool RHD2000Thread::stopAcquisition()
{
- // isTransmitting = false;
+ // isTransmitting = false;
std::cout << "RHD2000 data thread stopping acquisition." << std::endl;
if (isThreadRunning())
@@ -1088,6 +1371,7 @@ bool RHD2000Thread::stopAcquisition()
int ledArray[8] = {1, 0, 0, 0, 0, 0, 0, 0};
evalBoard->setLedDisplay(ledArray);
}
+
isTransmitting = false;
return true;
@@ -1135,7 +1419,7 @@ bool RHD2000Thread::updateBuffer()
streamNumber = -1;
- // then do the Intan ADC channels
+ // then do the Intan AUX channels
for (int dataStream = 0; dataStream < MAX_NUM_DATA_STREAMS; dataStream++)
{
if (numChannelsPerDataStream[dataStream] > 0)
@@ -1214,30 +1498,529 @@ bool RHD2000Thread::updateBuffer()
if (dacOutputShouldChange)
{
- if (audioOutputR >= 0)
+ for (int k=0; k<8; k++)
{
- evalBoard->enableDac(0, true);
- evalBoard->selectDacDataChannel(0, audioOutputR);
+ if (dacChannelsToUpdate[k])
+ {
+ dacChannelsToUpdate[k] = false;
+ if (dacChannels[k] >= 0)
+ {
+ evalBoard->enableDac(k, true);
+ evalBoard->selectDacDataStream(k, dacStream[k]);
+ evalBoard->selectDacDataChannel(k, dacChannels[k]);
+ evalBoard->setDacThresholdVoltage(k, (int) dacThresholds[k]);
+ }
+ else
+ {
+ evalBoard->enableDac(k, false);
+ }
+ }
}
- else
+
+ evalBoard->setTtlMode(ttlMode);
+ evalBoard->setFastSettleByTTL(fastTTLSettleEnabled);
+ evalBoard->setFastSettleByTTLchannel(fastSettleTTLChannel);
+ evalBoard->setDacHighpassFilter(desiredDAChpf);
+ evalBoard->enableDacHighpassFilter(desiredDAChpfState);
+
+ dacOutputShouldChange = false;
+ }
+
+
+ return true;
+
+}
+
+
+/***********************************/
+/* Below is code for impedance measurements */
+
+
+
+
+// Update electrode impedance measurement frequency, after checking that
+// requested test frequency lies within acceptable ranges based on the
+// amplifier bandwidth and the sampling rate. See impedancefreqdialog.cpp
+// for more information.
+float RHD2000Thread::updateImpedanceFrequency(float desiredImpedanceFreq, bool& impedanceFreqValid)
+{
+ int impedancePeriod;
+ double lowerBandwidthLimit, upperBandwidthLimit;
+ float actualImpedanceFreq;
+
+ upperBandwidthLimit = actualUpperBandwidth / 1.5;
+ lowerBandwidthLimit = actualLowerBandwidth * 1.5;
+ if (dspEnabled)
+ {
+ if (actualDspCutoffFreq > actualLowerBandwidth)
{
- evalBoard->enableDac(0, false);
+ lowerBandwidthLimit = actualDspCutoffFreq * 1.5;
}
+ }
- if (audioOutputL >= 0)
+ if (desiredImpedanceFreq > 0.0)
+ {
+ impedancePeriod = (boardSampleRate / desiredImpedanceFreq);
+ if (impedancePeriod >= 4 && impedancePeriod <= 1024 &&
+ desiredImpedanceFreq >= lowerBandwidthLimit &&
+ desiredImpedanceFreq <= upperBandwidthLimit)
{
- evalBoard->enableDac(1, true);
- evalBoard->selectDacDataChannel(1, audioOutputL);
+ actualImpedanceFreq = boardSampleRate / impedancePeriod;
+ impedanceFreqValid = true;
}
else
{
- evalBoard->enableDac(1, false);
+ actualImpedanceFreq = 0.0;
+ impedanceFreqValid = false;
}
+ }
+ else
+ {
+ actualImpedanceFreq = 0.0;
+ impedanceFreqValid = false;
+ }
- dacOutputShouldChange = false;
+ return actualImpedanceFreq;
+}
+
+
+// Reads numBlocks blocks of raw USB data stored in a queue of Rhd2000DataBlock
+// objects, loads this data into this SignalProcessor object, scaling the raw
+// data to generate waveforms with units of volts or microvolts.
+int RHD2000Thread::loadAmplifierData(queue<Rhd2000DataBlock>& dataQueue,
+ int numBlocks, int numDataStreams)
+{
+
+ int block, t, channel, stream, i, j;
+ int indexAmp = 0;
+ int indexAux = 0;
+ int indexSupply = 0;
+ int indexAdc = 0;
+ int indexDig = 0;
+ int numWordsWritten = 0;
+
+ int bufferIndex;
+ int16 tempQint16;
+ uint16 tempQuint16;
+ int32 tempQint32;
+
+ bool triggerFound = false;
+ const double AnalogTriggerThreshold = 1.65;
+
+
+ for (block = 0; block < numBlocks; ++block)
+ {
+
+ // Load and scale RHD2000 amplifier waveforms
+ // (sampled at amplifier sampling rate)
+ for (t = 0; t < SAMPLES_PER_DATA_BLOCK; ++t)
+ {
+ for (channel = 0; channel < 32; ++channel)
+ {
+ for (stream = 0; stream < numDataStreams; ++stream)
+ {
+ // Amplifier waveform units = microvolts
+ amplifierPreFilter[stream][channel][indexAmp] = 0.195 *
+ (dataQueue.front().amplifierData[stream][channel][t] - 32768);
+ }
+ }
+ ++indexAmp;
+ }
+ // We are done with this Rhd2000DataBlock object; remove it from dataQueue
+ dataQueue.pop();
}
+ return 0;
+}
- return true;
+#define PI 3.14159265359
+#define TWO_PI 6.28318530718
+#define DEGREES_TO_RADIANS 0.0174532925199
+#define RADIANS_TO_DEGREES 57.2957795132
+
+// Return the magnitude and phase (in degrees) of a selected frequency component (in Hz)
+// for a selected amplifier channel on the selected USB data stream.
+void RHD2000Thread::measureComplexAmplitude(std::vector<std::vector<std::vector<double>>>& measuredMagnitude,
+ std::vector<std::vector<std::vector<double>>>& measuredPhase,
+ int capIndex, int stream, int chipChannel, int numBlocks,
+ double sampleRate, double frequency, int numPeriods)
+{
+ int period = (sampleRate / frequency);
+ int startIndex = 0;
+ int endIndex = startIndex + numPeriods * period - 1;
+
+ // Move the measurement window to the end of the waveform to ignore start-up transient.
+ while (endIndex < SAMPLES_PER_DATA_BLOCK * numBlocks - period)
+ {
+ startIndex += period;
+ endIndex += period;
+ }
+
+ double iComponent, qComponent;
+
+ // Measure real (iComponent) and imaginary (qComponent) amplitude of frequency component.
+ amplitudeOfFreqComponent(iComponent, qComponent, amplifierPreFilter[stream][chipChannel],
+ startIndex, endIndex, sampleRate, frequency);
+ // Calculate magnitude and phase from real (I) and imaginary (Q) components.
+ measuredMagnitude[stream][chipChannel][capIndex] =
+ sqrt(iComponent * iComponent + qComponent * qComponent);
+ measuredPhase[stream][chipChannel][capIndex] =
+ RADIANS_TO_DEGREES *atan2(qComponent, iComponent);
+}
+
+// Returns the real and imaginary amplitudes of a selected frequency component in the vector
+// data, between a start index and end index.
+void RHD2000Thread::amplitudeOfFreqComponent(double& realComponent, double& imagComponent,
+ const std::vector<double>& data, int startIndex,
+ int endIndex, double sampleRate, double frequency)
+{
+ int length = endIndex - startIndex + 1;
+ const double k = TWO_PI * frequency / sampleRate; // precalculate for speed
+
+ // Perform correlation with sine and cosine waveforms.
+ double meanI = 0.0;
+ double meanQ = 0.0;
+ for (int t = startIndex; t <= endIndex; ++t)
+ {
+ meanI += data.at(t) * cos(k * t);
+ meanQ += data.at(t) * -1.0 * sin(k * t);
+ }
+ meanI /= (double) length;
+ meanQ /= (double) length;
+
+ realComponent = 2.0 * meanI;
+ imagComponent = 2.0 * meanQ;
+}
+
+
+
+// Given a measured complex impedance that is the result of an electrode impedance in parallel
+// with a parasitic capacitance (i.e., due to the amplifier input capacitance and other
+// capacitances associated with the chip bondpads), this function factors out the effect of the
+// parasitic capacitance to return the acutal electrode impedance.
+void RHD2000Thread::factorOutParallelCapacitance(double& impedanceMagnitude, double& impedancePhase,
+ double frequency, double parasiticCapacitance)
+{
+ // First, convert from polar coordinates to rectangular coordinates.
+ double measuredR = impedanceMagnitude * cos(DEGREES_TO_RADIANS * impedancePhase);
+ double measuredX = impedanceMagnitude * sin(DEGREES_TO_RADIANS * impedancePhase);
+
+ double capTerm = TWO_PI * frequency * parasiticCapacitance;
+ double xTerm = capTerm * (measuredR * measuredR + measuredX * measuredX);
+ double denominator = capTerm * xTerm + 2 * capTerm * measuredX + 1;
+ double trueR = measuredR / denominator;
+ double trueX = (measuredX + xTerm) / denominator;
+
+ // Now, convert from rectangular coordinates back to polar coordinates.
+ impedanceMagnitude = sqrt(trueR * trueR + trueX * trueX);
+ impedancePhase = RADIANS_TO_DEGREES * atan2(trueX, trueR);
+}
+
+// This is a purely empirical function to correct observed errors in the real component
+// of measured electrode impedances at sampling rates below 15 kS/s. At low sampling rates,
+// it is difficult to approximate a smooth sine wave with the on-chip voltage DAC and 10 kHz
+// 2-pole lowpass filter. This function attempts to somewhat correct for this, but a better
+// solution is to always run impedance measurements at 20 kS/s, where they seem to be most
+// accurate.
+void RHD2000Thread::empiricalResistanceCorrection(double& impedanceMagnitude, double& impedancePhase,
+ double boardSampleRate)
+{
+ // First, convert from polar coordinates to rectangular coordinates.
+ double impedanceR = impedanceMagnitude * cos(DEGREES_TO_RADIANS * impedancePhase);
+ double impedanceX = impedanceMagnitude * sin(DEGREES_TO_RADIANS * impedancePhase);
+
+ // Emprically derived correction factor (i.e., no physical basis for this equation).
+ impedanceR /= 10.0 * exp(-boardSampleRate / 2500.0) * cos(TWO_PI * boardSampleRate / 15000.0) + 1.0;
+
+ // Now, convert from rectangular coordinates back to polar coordinates.
+ impedanceMagnitude = sqrt(impedanceR * impedanceR + impedanceX * impedanceX);
+ impedancePhase = RADIANS_TO_DEGREES * atan2(impedanceX, impedanceR);
+}
+
+void RHD2000Thread::runImpedanceTest(Array<int>& streams, Array<int>& channels, Array<float>& magnitudes, Array<float>& phases)
+{
+ int commandSequenceLength, stream, channel, capRange;
+ double cSeries;
+ vector<int> commandList;
+ int triggerIndex; // dummy reference variable; not used
+ queue<Rhd2000DataBlock> bufferQueue; // dummy reference variable; not used
+ int numdataStreams = evalBoard->getNumEnabledDataStreams();
+
+ bool rhd2164ChipPresent = false;
+ Array<int> enabledStreams;
+ for (stream = 0; stream < MAX_NUM_DATA_STREAMS; ++stream)
+ {
+
+ if (evalBoard->isStreamEnabled(stream))
+ {
+ enabledStreams.add(stream);
+ }
+
+ if (chipId[stream] == CHIP_ID_RHD2164_B)
+ {
+ rhd2164ChipPresent = true;
+ }
+ }
+
+ bool validImpedanceFreq;
+ float actualImpedanceFreq = updateImpedanceFrequency(1000.0, validImpedanceFreq);
+ if (!validImpedanceFreq)
+ {
+ return ;
+ }
+ // Create a command list for the AuxCmd1 slot.
+ commandSequenceLength = chipRegisters.createCommandListZcheckDac(commandList, actualImpedanceFreq, 128.0);
+ evalBoard->uploadCommandList(commandList, Rhd2000EvalBoard::AuxCmd1, 1);
+ evalBoard->selectAuxCommandLength(Rhd2000EvalBoard::AuxCmd1,
+ 0, commandSequenceLength - 1);
+ bool fastSettleMode = evalBoard->getExternalFastSettle();
+ if (fastSettleMode)
+ {
+ evalBoard->enableExternalFastSettle(false);
+ }
+
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortA,
+ Rhd2000EvalBoard::AuxCmd1, 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortB,
+ Rhd2000EvalBoard::AuxCmd1, 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortC,
+ Rhd2000EvalBoard::AuxCmd1, 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortD,
+ Rhd2000EvalBoard::AuxCmd1, 1);
+
+ // Select number of periods to measure impedance over
+ int numPeriods = (0.020 * actualImpedanceFreq); // Test each channel for at least 20 msec...
+ if (numPeriods < 5) numPeriods = 5; // ...but always measure across no fewer than 5 complete periods
+ double period = boardSampleRate / actualImpedanceFreq;
+ int numBlocks = ceil((numPeriods + 2.0) * period / 60.0); // + 2 periods to give time to settle initially
+ if (numBlocks < 2) numBlocks = 2; // need first block for command to switch channels to take effect.
+
+ actualDspCutoffFreq = chipRegisters.setDspCutoffFreq(desiredDspCutoffFreq);
+ actualLowerBandwidth = chipRegisters.setLowerBandwidth(desiredLowerBandwidth);
+ actualUpperBandwidth = chipRegisters.setUpperBandwidth(desiredUpperBandwidth);
+ chipRegisters.enableDsp(dspEnabled);
+ chipRegisters.enableZcheck(true);
+ commandSequenceLength = chipRegisters.createCommandListRegisterConfig(commandList, false);
+ // Upload version with no ADC calibration to AuxCmd3 RAM Bank 1.
+ evalBoard->uploadCommandList(commandList, Rhd2000EvalBoard::AuxCmd3, 3);
+ evalBoard->selectAuxCommandLength(Rhd2000EvalBoard::AuxCmd3, 0, commandSequenceLength - 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortA, Rhd2000EvalBoard::AuxCmd3, 3);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortB, Rhd2000EvalBoard::AuxCmd3, 3);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortC, Rhd2000EvalBoard::AuxCmd3, 3);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortD, Rhd2000EvalBoard::AuxCmd3, 3);
+
+ evalBoard->setContinuousRunMode(false);
+ evalBoard->setMaxTimeStep(SAMPLES_PER_DATA_BLOCK * numBlocks);
+
+ // Create matrices of doubles of size (numStreams x 32 x 3) to store complex amplitudes
+ // of all amplifier channels (32 on each data stream) at three different Cseries values.
+ std::vector<std::vector<std::vector<double>>> measuredMagnitude;
+ std::vector<std::vector<std::vector<double>>> measuredPhase;
+
+ measuredMagnitude.resize(evalBoard->getNumEnabledDataStreams());
+ measuredPhase.resize(evalBoard->getNumEnabledDataStreams());
+ for (int i = 0; i < evalBoard->getNumEnabledDataStreams(); ++i)
+ {
+ measuredMagnitude[i].resize(32);
+ measuredPhase[i].resize(32);
+ for (int j = 0; j < 32; ++j)
+ {
+ measuredMagnitude[i][j].resize(3);
+ measuredPhase[i][j].resize(3);
+ }
+ }
+
+
+
+ double distance, minDistance, current, Cseries;
+ double impedanceMagnitude, impedancePhase;
+
+ const double bestAmplitude = 250.0; // we favor voltage readings that are closest to 250 uV: not too large,
+ // and not too small.
+ const double dacVoltageAmplitude = 128 * (1.225 / 256); // this assumes the DAC amplitude was set to 128
+ const double parasiticCapacitance = 14.0e-12; // 14 pF: an estimate of on-chip parasitic capacitance,
+ // including 10 pF of amplifier input capacitance.
+ double relativeFreq = actualImpedanceFreq / boardSampleRate;
+
+ int bestAmplitudeIndex;
+
+ // We execute three complete electrode impedance measurements: one each with
+ // Cseries set to 0.1 pF, 1 pF, and 10 pF. Then we select the best measurement
+ // for each channel so that we achieve a wide impedance measurement range.
+ for (capRange = 0; capRange < 3; ++ capRange)
+ {
+
+
+ switch (capRange)
+ {
+ case 0:
+ chipRegisters.setZcheckScale(Rhd2000Registers::ZcheckCs100fF);
+ cSeries = 0.1e-12;
+ cout << "setting capacitance to 0.1pF" << endl;
+ break;
+ case 1:
+ chipRegisters.setZcheckScale(Rhd2000Registers::ZcheckCs1pF);
+ cSeries = 1.0e-12;
+ cout << "setting capacitance to 1pF" << endl;
+ break;
+ case 2:
+ chipRegisters.setZcheckScale(Rhd2000Registers::ZcheckCs10pF);
+ cSeries = 10.0e-12;
+ cout << "setting capacitance to 10pF" << endl;
+ break;
+ }
+
+ // Check all 32 channels across all active data streams.
+ for (channel = 0; channel < 32; ++channel)
+ {
+ cout << "running impedance on channel " << channel << endl;
+
+ chipRegisters.setZcheckChannel(channel);
+ commandSequenceLength =
+ chipRegisters.createCommandListRegisterConfig(commandList, false);
+ // Upload version with no ADC calibration to AuxCmd3 RAM Bank 1.
+ evalBoard->uploadCommandList(commandList, Rhd2000EvalBoard::AuxCmd3, 3);
+
+ evalBoard->run();
+ while (evalBoard->isRunning())
+ {
-}
\ No newline at end of file
+ }
+ queue<Rhd2000DataBlock> dataQueue;
+ evalBoard->readDataBlocks(numBlocks, dataQueue);
+ loadAmplifierData(dataQueue, numBlocks, numdataStreams);
+ for (stream = 0; stream < numdataStreams; ++stream)
+ {
+ if (chipId[stream] != CHIP_ID_RHD2164_B)
+ {
+ measureComplexAmplitude(measuredMagnitude, measuredPhase,
+ capRange, stream, channel, numBlocks, boardSampleRate,
+ actualImpedanceFreq, numPeriods);
+ }
+ }
+
+ // If an RHD2164 chip is plugged in, we have to set the Zcheck select register to channels 32-63
+ // and repeat the previous steps.
+ if (rhd2164ChipPresent)
+ {
+ chipRegisters.setZcheckChannel(channel + 32); // address channels 32-63
+ commandSequenceLength =
+ chipRegisters.createCommandListRegisterConfig(commandList, false);
+ // Upload version with no ADC calibration to AuxCmd3 RAM Bank 1.
+ evalBoard->uploadCommandList(commandList, Rhd2000EvalBoard::AuxCmd3, 3);
+
+ evalBoard->run();
+ while (evalBoard->isRunning())
+ {
+
+ }
+ evalBoard->readDataBlocks(numBlocks, dataQueue);
+ loadAmplifierData(dataQueue, numBlocks, numdataStreams);
+
+ for (stream = 0; stream < evalBoard->getNumEnabledDataStreams(); ++stream)
+ {
+ if (chipId[stream] == CHIP_ID_RHD2164_B)
+ {
+ measureComplexAmplitude(measuredMagnitude, measuredPhase,
+ capRange, stream, channel, numBlocks, boardSampleRate,
+ actualImpedanceFreq, numPeriods);
+ }
+ }
+ }
+ }
+ }
+
+ streams.clear();
+ channels.clear();
+ magnitudes.clear();
+ phases.clear();
+
+ for (stream = 0; stream < evalBoard->getNumEnabledDataStreams(); ++stream)
+ {
+ for (channel = 0; channel < 32; ++channel)
+ {
+ if (1)
+ {
+ minDistance = 9.9e99; // ridiculously large number
+ for (capRange = 0; capRange < 3; ++capRange)
+ {
+ // Find the measured amplitude that is closest to bestAmplitude on a logarithmic scale
+ distance = abs(log(measuredMagnitude[stream][channel][capRange] / bestAmplitude));
+ if (distance < minDistance)
+ {
+ bestAmplitudeIndex = capRange;
+ minDistance = distance;
+ }
+ }
+ switch (bestAmplitudeIndex)
+ {
+ case 0:
+ Cseries = 0.1e-12;
+ break;
+ case 1:
+ Cseries = 1.0e-12;
+ break;
+ case 2:
+ Cseries = 10.0e-12;
+ break;
+ }
+
+ // Calculate current amplitude produced by on-chip voltage DAC
+ current = TWO_PI * actualImpedanceFreq * dacVoltageAmplitude * Cseries;
+
+ // Calculate impedance magnitude from calculated current and measured voltage.
+ impedanceMagnitude = 1.0e-6 * (measuredMagnitude[stream][channel][bestAmplitudeIndex] / current) *
+ (18.0 * relativeFreq * relativeFreq + 1.0);
+
+ // Calculate impedance phase, with small correction factor accounting for the
+ // 3-command SPI pipeline delay.
+ impedancePhase = measuredPhase[stream][channel][bestAmplitudeIndex] + (360.0 * (3.0 / period));
+
+ // Factor out on-chip parasitic capacitance from impedance measurement.
+ factorOutParallelCapacitance(impedanceMagnitude, impedancePhase, actualImpedanceFreq,
+ parasiticCapacitance);
+
+ // Perform empirical resistance correction to improve accuarcy at sample rates below
+ // 15 kS/s.
+ empiricalResistanceCorrection(impedanceMagnitude, impedancePhase,
+ boardSampleRate);
+
+ streams.add(enabledStreams[stream]);
+ channels.add(channel);
+ magnitudes.add(impedanceMagnitude);
+ phases.add(impedancePhase);
+
+ if (impedanceMagnitude > 1000000)
+ cout << "stream " << stream << " channel " << 1+channel << " magnitude: " << String(impedanceMagnitude/1e6,2) << " mOhm , phase : " <<impedancePhase << endl;
+ else
+ cout << "stream " << stream << " channel " << 1+channel << " magnitude: " << String(impedanceMagnitude/1e3,2) << " kOhm , phase : " <<impedancePhase << endl;
+
+ }
+ }
+ }
+
+ evalBoard->setContinuousRunMode(false);
+ evalBoard->setMaxTimeStep(0);
+ evalBoard->flush();
+
+ // Switch back to flatline
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortA, Rhd2000EvalBoard::AuxCmd1, 0);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortB, Rhd2000EvalBoard::AuxCmd1, 0);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortC, Rhd2000EvalBoard::AuxCmd1, 0);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortD, Rhd2000EvalBoard::AuxCmd1, 0);
+ evalBoard->selectAuxCommandLength(Rhd2000EvalBoard::AuxCmd1, 0, 1);
+
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortA, Rhd2000EvalBoard::AuxCmd3,
+ fastSettleEnabled ? 2 : 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortB, Rhd2000EvalBoard::AuxCmd3,
+ fastSettleEnabled ? 2 : 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortC, Rhd2000EvalBoard::AuxCmd3,
+ fastSettleEnabled ? 2 : 1);
+ evalBoard->selectAuxCommandBank(Rhd2000EvalBoard::PortD, Rhd2000EvalBoard::AuxCmd3,
+ fastSettleEnabled ? 2 : 1);
+
+ if (fastSettleMode)
+ {
+ evalBoard->enableExternalFastSettle(true);
+ }
+}
diff --git a/Source/Processors/DataThreads/RHD2000Thread.h b/Source/Processors/DataThreads/RHD2000Thread.h
index 203cfa0b0ef7da76bc47a7ce44c9bea4d1b78b40..08b7831de3e38086bd7b1d29c82793b9a976e46a 100644
--- a/Source/Processors/DataThreads/RHD2000Thread.h
+++ b/Source/Processors/DataThreads/RHD2000Thread.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -37,6 +37,7 @@
#include "rhythm-api/okFrontPanelDLL.h"
#include "DataThread.h"
+#include "../GenericProcessor/GenericProcessor.h"
#define MAX_NUM_DATA_STREAMS 8
@@ -50,7 +51,7 @@ class SourceNode;
*/
-class RHD2000Thread : public DataThread
+class RHD2000Thread : public DataThread, public Timer
{
public:
@@ -71,34 +72,62 @@ public:
void setSampleRate(int index, bool temporary = false);
double setUpperBandwidth(double upper); // set desired BW, returns actual BW
- double setLowerBandwidth(double lower);
+ double setLowerBandwidth(double lower);
+
double setDspCutoffFreq(double freq);
double getDspCutoffFreq();
void setDSPOffset(bool state);
int setNoiseSlicerLevel(int level);
+ void runImpedanceTest(Array<int> &stream, Array<int> &channel, Array<float> &magnitude, Array<float> &phase);
+ void setFastTTLSettle(bool state, int channel);
+ void setTTLoutputMode(bool state);
+ void setDAChpf(float cutoff, bool enabled);
void scanPorts();
-
+ float updateImpedanceFrequency(float desiredImpedanceFreq, bool &impedanceFreqValid);
+ int loadAmplifierData(queue<Rhd2000DataBlock> &dataQueue,
+ int numBlocks, int numDataStreams);
+ void measureComplexAmplitude(std::vector<std::vector<std::vector<double>>> &measuredMagnitude,
+ std::vector<std::vector<std::vector<double>>> &measuredPhase,
+ int capIndex, int stream, int chipChannel, int numBlocks,
+ double sampleRate, double frequency, int numPeriods);
+ void amplitudeOfFreqComponent(double &realComponent, double &imagComponent,
+ const std::vector<double> &data, int startIndex,
+ int endIndex, double sampleRate, double frequency);
int getNumEventChannels();
+ int getNumADCchannels();
void assignAudioOut(int dacChannel, int dataChannel);
void enableAdcs(bool);
bool isAcquisitionActive();
-
+
+ virtual int modifyChannelGain(channelType t, int str, int ch, float gain);
+ virtual int modifyChannelName(channelType t, int str, int k, String newName);
+ virtual void getChannelsInfo(StringArray &Names, Array<channelType> &type, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains);
+ virtual void getEventChannelNames(StringArray &Names);
void updateChannelNames();
+ Array<int> getDACchannels();
+ void setDACchannel(int dacOutput, int stream, int channel);
+ void setDACthreshold(int dacOutput, float threshold);
+ void setDefaultNamingScheme(int scheme);
private:
+ void setDefaultChannelNamesAndType();
+ bool channelModified(channelType t, int str, int k, String &oldName, float &oldGain, int &index);
ScopedPointer<Rhd2000EvalBoard> evalBoard;
Rhd2000Registers chipRegisters;
Rhd2000DataBlock* dataBlock;
-
+ std::vector<std::vector<std::vector<double>>> amplifierPreFilter;
Array<int> numChannelsPerDataStream;
-
+ void factorOutParallelCapacitance(double &impedanceMagnitude, double &impedancePhase,
+ double frequency, double parasiticCapacitance);
+ void empiricalResistanceCorrection(double &impedanceMagnitude, double &impedancePhase,
+ double boardSampleRate);
int numChannels;
bool deviceFound;
@@ -114,6 +143,11 @@ private:
bool acquireAuxChannels;
bool fastSettleEnabled;
+ bool fastTTLSettleEnabled;
+ bool fastSettleTTLChannel;
+ bool ttlMode;
+ bool desiredDAChpfState;
+ double desiredDAChpf;
bool dspEnabled;
double actualDspCutoffFreq, desiredDspCutoffFreq;
@@ -125,7 +159,7 @@ private:
String libraryFilePath;
-
+ void timerCallback();
bool startAcquisition();
bool stopAcquisition();
@@ -143,6 +177,19 @@ private:
double cableLengthPortA, cableLengthPortB, cableLengthPortC, cableLengthPortD;
int audioOutputL, audioOutputR;
+ int *dacChannels, *dacStream;
+ float *dacThresholds;
+ bool *dacChannelsToUpdate;
+ Array<int> chipId;
+
+ // used for data stream names...
+ int numberingScheme ;
+ StringArray Names, oldNames;
+ Array<channelType> type, oldType;
+ Array<float> gains, oldGains;
+ Array<int> stream, oldStream;
+ Array<bool> modifiedName, oldModifiedName;
+ Array<int> originalChannelNumber, oldChannelNumber;
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RHD2000Thread);
diff --git a/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp b/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp
index 54e5e702162843a8658edfa10d7c826d488b00d7..686aaa17385d56b1fcd1e5e7bff6d0c979711326 100755
--- a/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp
+++ b/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.cpp
@@ -39,6 +39,7 @@ using namespace std;
Rhd2000EvalBoard::Rhd2000EvalBoard()
{
int i;
+ fast_settle_enabled = false;
sampleRate = SampleRate30000Hz; // Rhythm FPGA boots up with 30.0 kS/s/channel sampling rate
numDataStreams = 0;
dev = 0; //nullptr;
@@ -47,6 +48,13 @@ Rhd2000EvalBoard::Rhd2000EvalBoard()
{
dataStreamEnabled[i] = 0;
}
+ dacChannelAssignment = new int[8];
+ dacChannelThreshold = new float[8];
+ for (int k=0;k<8;k++)
+ {
+ dacChannelAssignment[k] = -1;
+ dacChannelThreshold[k] =0;
+ }
}
//Destructor: Deletes the device to avoid memory leak
@@ -132,28 +140,28 @@ bool Rhd2000EvalBoard::uploadFpgaBitfile(string filename)
break;
case okCFrontPanel::DeviceNotOpen:
cerr << "FPGA configuration failed: Device not open." << endl;
- return (false);
+ return(false);
case okCFrontPanel::FileError:
cerr << "FPGA configuration failed: Cannot find configuration file." << endl;
- return (false);
+ return(false);
case okCFrontPanel::InvalidBitstream:
cerr << "FPGA configuration failed: Bitstream is not properly formatted." << endl;
- return (false);
+ return(false);
case okCFrontPanel::DoneNotHigh:
cerr << "FPGA configuration failed: FPGA DONE signal did not assert after configuration." << endl;
- return (false);
+ return(false);
case okCFrontPanel::TransferError:
cerr << "FPGA configuration failed: USB error occurred during download." << endl;
- return (false);
+ return(false);
case okCFrontPanel::CommunicationError:
cerr << "FPGA configuration failed: Communication error with firmware." << endl;
- return (false);
+ return(false);
case okCFrontPanel::UnsupportedFeature:
cerr << "FPGA configuration failed: Unsupported feature." << endl;
- return (false);
+ return(false);
default:
cerr << "FPGA configuration failed: Unknown error." << endl;
- return (false);
+ return(false);
}
// Check for Opal Kelly FrontPanel support in the FPGA configuration.
@@ -162,7 +170,7 @@ bool Rhd2000EvalBoard::uploadFpgaBitfile(string filename)
cerr << "Opal Kelly FrontPanel support is not enabled in this FPGA configuration." << endl;
delete dev;
dev = 0; //nullptr;
- return (false);
+ return(false);
}
int boardId, boardVersion;
@@ -173,7 +181,7 @@ bool Rhd2000EvalBoard::uploadFpgaBitfile(string filename)
if (boardId != RHYTHM_BOARD_ID)
{
cerr << "FPGA configuration does not support Rhythm. Incorrect board ID: " << boardId << endl;
- return (false);
+ return(false);
}
else
{
@@ -181,9 +189,14 @@ bool Rhd2000EvalBoard::uploadFpgaBitfile(string filename)
boardVersion << endl << endl;
}
- return (true);
+ return(true);
}
+// Uses the Opal Kelly library to reset the FPGA
+void Rhd2000EvalBoard::resetFpga()
+{
+ dev->ResetFPGA();
+}
// Reads system clock frequency from Opal Kelly board (in MHz). Should be 100 MHz for normal
// Rhythm operation.
@@ -275,6 +288,18 @@ void Rhd2000EvalBoard::initialize()
setDacGain(0);
setAudioNoiseSuppress(0);
+
+ setTtlMode(0); // If 1 then Digital outputs 0-7 are DAC comparators; 8-15 under manual control
+ // by default, set to 0 (all are under manual control).
+
+ setDacThreshold(0, 32768, true);
+ setDacThreshold(1, 32768, true);
+ setDacThreshold(2, 32768, true);
+ setDacThreshold(3, 32768, true);
+ setDacThreshold(4, 32768, true);
+ setDacThreshold(5, 32768, true);
+ setDacThreshold(6, 32768, true);
+ setDacThreshold(7, 32768, true);
}
// Set the per-channel sampling rate of the RHD2000 chips connected to the FPGA.
@@ -406,7 +431,7 @@ bool Rhd2000EvalBoard::setSampleRate(AmplifierSampleRate newSampleRate)
D = 25;
break;
default:
- return (false);
+ return(false);
}
sampleRate = newSampleRate;
@@ -422,7 +447,7 @@ bool Rhd2000EvalBoard::setSampleRate(AmplifierSampleRate newSampleRate)
// Wait for DataClkLocked = 1 before allowing data acquisition to continue
while (isDataClockLocked() == false) {}
- return (true);
+ return(true);
}
// Returns the current per-channel sampling rate (in Hz) as a floating-point number.
@@ -492,7 +517,7 @@ Rhd2000EvalBoard::AmplifierSampleRate Rhd2000EvalBoard::getSampleRateEnum() cons
}
// Print a command list to the console in readable form.
-void Rhd2000EvalBoard::printCommandList(const vector<int>& commandList) const
+void Rhd2000EvalBoard::printCommandList(const vector<int> &commandList) const
{
unsigned int i;
int cmd, channel, reg, data;
@@ -543,7 +568,7 @@ void Rhd2000EvalBoard::printCommandList(const vector<int>& commandList) const
// Upload an auxiliary command list to a particular command slot (AuxCmd1, AuxCmd2, or AuxCmd3) and RAM bank (0-15)
// on the FPGA.
-void Rhd2000EvalBoard::uploadCommandList(const vector<int>& commandList, AuxCmdSlot auxCommandSlot, int bank)
+void Rhd2000EvalBoard::uploadCommandList(const vector<int> &commandList, AuxCmdSlot auxCommandSlot, int bank)
{
unsigned int i;
@@ -678,12 +703,6 @@ void Rhd2000EvalBoard::resetBoard()
dev->UpdateWireIns();
}
-// Use the Opal Kelly library to reset the FPGA
-void Rhd2000EvalBoard::resetFpga()
-{
- dev->ResetFPGA();
-}
-
// Set the FPGA to run continuously once started (if continuousMode == true) or to run until
// maxTimeStep is reached (if continuousMode == false).
void Rhd2000EvalBoard::setContinuousRunMode(bool continuousMode)
@@ -906,6 +925,14 @@ void Rhd2000EvalBoard::setDataSource(int stream, BoardDataSource dataSource)
dev->UpdateWireIns();
}
+bool Rhd2000EvalBoard::isStreamEnabled(int streamIndex)
+{
+ if (streamIndex < 0 || streamIndex > (MAX_NUM_DATA_STREAMS - 1))
+ return false;
+
+ return dataStreamEnabled[streamIndex];
+}
+
// Enable or disable one of the eight available USB data streams (0-7).
void Rhd2000EvalBoard::enableDataStream(int stream, bool enabled)
{
@@ -1127,6 +1154,69 @@ void Rhd2000EvalBoard::selectDacDataStream(int dacChannel, int stream)
dev->UpdateWireIns();
}
+void Rhd2000EvalBoard::setFastSettleByTTL(bool state)
+
+{
+ dev->SetWireInValue(WireInResetRun, (state ? 0x10 : 0x00), 0x10);
+ dev->UpdateWireIns();
+}
+
+void Rhd2000EvalBoard::setFastSettleByTTLchannel(int channel)
+{
+ if (channel < 0 || channel > 7)
+ {
+ cerr << "Error in Rhd2000EvalBoard::setFastSettleByTTLchannel: channel out of range." << endl;
+ return;
+ }
+// the WireInTTLSettleChannel is also used by DAC, so keep the values of 10 used bits
+ // and shift the channel value 10 bits to the left
+ dev->SetWireInValue(WireInTTLSettleChannel, channel << 10, 0x3c00);
+ dev->UpdateWireIns();
+}
+
+
+
+// Enable external triggering of amplifier hardware 'fast settle' function (blanking).
+// If external triggering is enabled, this fast settling of amplifiers on all connected
+// chips will be controlled in real time via one of the 16 TTL inputs.
+void Rhd2000EvalBoard::enableExternalFastSettle(bool enable)
+{
+ fast_settle_enabled = enable;
+ dev->SetWireInValue(WireInMultiUse, enable ? 1 : 0);
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInExtFastSettle, 0);
+}
+
+bool Rhd2000EvalBoard::getExternalFastSettle()
+{
+ return fast_settle_enabled;
+}
+// Select which of the TTL inputs 0-15 is used to perform a hardware 'fast settle' (blanking)
+// of the amplifiers if external triggering of fast settling
+// is enabled.
+void Rhd2000EvalBoard::setExternalFastSettleChannel(int channel)
+{
+ if (channel < 0 || channel > 15) {
+ cerr << "Error in Rhd2000EvalBoard::setExternalFastSettleChannel: channel out of range." << endl;
+ return;
+ }
+ dev->SetWireInValue(WireInMultiUse, channel);
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInExtFastSettle, 1);
+}
+
+int Rhd2000EvalBoard::gecDacDataChannel(int dacChannel)
+{
+ if (dacChannel < 0 || dacChannel > 7)
+ return -1;
+ return dacChannelAssignment[dacChannel];
+}
+
+void Rhd2000EvalBoard::updateDacAssignment(int dacChannel, int channel)
+{
+ dacChannelAssignment[dacChannel] = channel;
+}
+
// Assign a particular amplifier channel (0-31) to a DAC channel (0-7).
void Rhd2000EvalBoard::selectDacDataChannel(int dacChannel, int dataChannel)
{
@@ -1141,6 +1231,7 @@ void Rhd2000EvalBoard::selectDacDataChannel(int dacChannel, int dataChannel)
cerr << "Error in Rhd2000EvalBoard::selectDacDataChannel: dataChannel out of range." << endl;
return;
}
+ dacChannelAssignment[dacChannel] = dataChannel;
switch (dacChannel)
{
@@ -1172,6 +1263,112 @@ void Rhd2000EvalBoard::selectDacDataChannel(int dacChannel, int dataChannel)
dev->UpdateWireIns();
}
+// Enable optional FPGA-implemented digital high-pass filters associated with DAC outputs
+// on USB interface board.. These one-pole filters can be used to record wideband neural data
+// while viewing only spikes without LFPs on the DAC outputs, for example. This is useful when
+// using the low-latency FPGA thresholds to detect spikes and produce digital pulses on the TTL
+// outputs, for example.
+void Rhd2000EvalBoard::enableDacHighpassFilter(bool enable)
+{
+ dev->SetWireInValue(WireInMultiUse, enable ? 1 : 0);
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInDacHpf, 0);
+}
+
+// Set cutoff frequency (in Hz) for optional FPGA-implemented digital high-pass filters
+// associated with DAC outputs on USB interface board. These one-pole filters can be used
+// to record wideband neural data while viewing only spikes without LFPs on the DAC outputs,
+// for example. This is useful when using the low-latency FPGA thresholds to detect spikes
+// and produce digital pulses on the TTL outputs, for example.
+void Rhd2000EvalBoard::setDacHighpassFilter(double cutoff)
+{
+ double b;
+ int filterCoefficient;
+ const double pi = 3.1415926535897;
+
+ // Note that the filter coefficient is a function of the amplifier sample rate, so this
+ // function should be called after the sample rate is changed.
+ b = 1.0 - exp(-2.0 * pi * cutoff / getSampleRate());
+
+ // In hardware, the filter coefficient is represented as a 16-bit number.
+ filterCoefficient = (int) floor(65536.0 * b + 0.5);
+
+ if (filterCoefficient < 1) {
+ filterCoefficient = 1;
+ } else if (filterCoefficient > 65535) {
+ filterCoefficient = 65535;
+ }
+
+ dev->SetWireInValue(WireInMultiUse, filterCoefficient);
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInDacHpf, 1);
+}
+
+// Set thresholds for DAC channels; threshold output signals appear on TTL outputs 0-7.
+// The parameter 'threshold' corresponds to the RHD2000 chip ADC output value, and must fall
+// in the range of 0 to 65535, where the 'zero' level is 32768.
+// If trigPolarity is true, voltages equaling or rising above the threshold produce a high TTL output.
+// If trigPolarity is false, voltages equaling or falling below the threshold produce a high TTL output.
+//
+// To convert threshold in voltage to this range, use the following:
+// int threshLevel = ((double) threshold / 0.195) + 32768;
+// evalBoard->setDacThreshold(0, threshLevel, threshold >= 0);
+
+void Rhd2000EvalBoard::setDacThresholdVoltage(int dacChannel, float voltage_threshold)
+{
+ int threshLevel = (voltage_threshold / 0.195) + 32768;
+ setDacThreshold(dacChannel, abs(threshLevel), voltage_threshold >= 0);
+
+}
+
+void Rhd2000EvalBoard::getDacInformation(int *ch, float *th)
+{
+ for (int k=0;k<8;k++)
+ {
+ ch[k] = dacChannelAssignment[k];
+ th[k] = dacChannelThreshold[k];
+ }
+}
+
+void Rhd2000EvalBoard::setDacThreshold(int dacChannel, int threshold, bool trigPolarityPositive)
+{
+ if (dacChannel < 0 || dacChannel > 7) {
+ cerr << "Error in Rhd2000EvalBoard::setDacThreshold: dacChannel out of range." << endl;
+ return;
+ }
+
+ if (threshold < 0 || threshold > 65535) {
+ cerr << "Error in Rhd2000EvalBoard::setDacThreshold: threshold out of range." << endl;
+ return;
+ }
+ dacChannelThreshold[dacChannel] = trigPolarityPositive? -(float)(threshold-32768)*0.195 : (float)(threshold-32768)*0.195;
+
+ // Set threshold level.
+ dev->SetWireInValue(WireInMultiUse, threshold);
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInDacThresh, dacChannel);
+
+ // Set threshold polarity.
+ dev->SetWireInValue(WireInMultiUse, (trigPolarityPositive ? 1 : 0));
+ dev->UpdateWireIns();
+ dev->ActivateTriggerIn(TrigInDacThresh, dacChannel + 8);
+}
+
+// Set the TTL output mode of the board.
+// mode = 0: All 16 TTL outputs are under manual control
+// mode = 1: Top 8 TTL outputs are under manual control;
+// Bottom 8 TTL outputs are outputs of DAC comparators
+void Rhd2000EvalBoard::setTtlMode(int mode)
+{
+ if (mode < 0 || mode > 1) {
+ cerr << "Error in Rhd2000EvalBoard::setTtlMode: mode out of range." << endl;
+ return;
+ }
+
+ dev->SetWireInValue(WireInResetRun, mode << 3, 0x0008);
+ dev->UpdateWireIns();
+}
+
// Is variable-frequency clock DCM programming done?
bool Rhd2000EvalBoard::isDcmProgDone() const
{
@@ -1232,7 +1429,7 @@ bool Rhd2000EvalBoard::readDataBlock(Rhd2000DataBlock* dataBlock)
// Reads a certain number of USB data blocks, if the specified number is available, and appends them
// to queue. Returns true if data blocks were available.
-bool Rhd2000EvalBoard::readDataBlocks(int numBlocks, queue<Rhd2000DataBlock>& dataQueue)
+bool Rhd2000EvalBoard::readDataBlocks(int numBlocks, queue<Rhd2000DataBlock> &dataQueue)
{
unsigned int numWordsToRead, numBytesToRead;
int i;
@@ -1269,7 +1466,7 @@ bool Rhd2000EvalBoard::readDataBlocks(int numBlocks, queue<Rhd2000DataBlock>& da
// Writes the contents of a data block queue (dataQueue) to a binary output stream (saveOut).
// Returns the number of data blocks written.
-int Rhd2000EvalBoard::queueToFile(queue<Rhd2000DataBlock>& dataQueue, ofstream& saveOut)
+int Rhd2000EvalBoard::queueToFile(queue<Rhd2000DataBlock> &dataQueue, ofstream& saveOut)
{
int count = 0;
@@ -1289,61 +1486,74 @@ string Rhd2000EvalBoard::opalKellyModelName(int model) const
switch (model)
{
case OK_PRODUCT_XEM3001V1:
- return ("XEM3001V1");
+ return("XEM3001V1");
case OK_PRODUCT_XEM3001V2:
- return ("XEM3001V2");
+ return("XEM3001V2");
case OK_PRODUCT_XEM3010:
- return ("XEM3010");
+ return("XEM3010");
case OK_PRODUCT_XEM3005:
- return ("XEM3005");
+ return("XEM3005");
case OK_PRODUCT_XEM3001CL:
- return ("XEM3001CL");
+ return("XEM3001CL");
case OK_PRODUCT_XEM3020:
- return ("XEM3020");
+ return("XEM3020");
case OK_PRODUCT_XEM3050:
- return ("XEM3050");
+ return("XEM3050");
case OK_PRODUCT_XEM9002:
- return ("XEM9002");
+ return("XEM9002");
case OK_PRODUCT_XEM3001RB:
- return ("XEM3001RB");
+ return("XEM3001RB");
case OK_PRODUCT_XEM5010:
- return ("XEM5010");
+ return("XEM5010");
case OK_PRODUCT_XEM6110LX45:
- return ("XEM6110LX45");
+ return("XEM6110LX45");
case OK_PRODUCT_XEM6001:
- return ("XEM6001");
+ return("XEM6001");
case OK_PRODUCT_XEM6010LX45:
- return ("XEM6010LX45");
+ return("XEM6010LX45");
case OK_PRODUCT_XEM6010LX150:
- return ("XEM6010LX150");
+ return("XEM6010LX150");
case OK_PRODUCT_XEM6110LX150:
- return ("XEM6110LX150");
+ return("XEM6110LX150");
case OK_PRODUCT_XEM6006LX9:
- return ("XEM6006LX9");
+ return("XEM6006LX9");
case OK_PRODUCT_XEM6006LX16:
- return ("XEM6006LX16");
+ return("XEM6006LX16");
case OK_PRODUCT_XEM6006LX25:
- return ("XEM6006LX25");
+ return("XEM6006LX25");
case OK_PRODUCT_XEM5010LX110:
- return ("XEM5010LX110");
+ return("XEM5010LX110");
case OK_PRODUCT_ZEM4310:
- return ("ZEM4310");
+ return("ZEM4310");
case OK_PRODUCT_XEM6310LX45:
- return ("XEM6310LX45");
+ return("XEM6310LX45");
case OK_PRODUCT_XEM6310LX150:
- return ("XEM6310LX150");
+ return("XEM6310LX150");
case OK_PRODUCT_XEM6110V2LX45:
- return ("XEM6110V2LX45");
+ return("XEM6110V2LX45");
case OK_PRODUCT_XEM6110V2LX150:
- return ("XEM6110V2LX150");
+ return("XEM6110V2LX150");
case OK_PRODUCT_XEM6002LX9:
- return ("XEM6002LX9");
+ return("XEM6002LX9");
case OK_PRODUCT_XEM6310MTLX45:
- return ("XEM6310MTLX45");
+ return("XEM6310MTLX45");
case OK_PRODUCT_XEM6320LX130T:
- return ("XEM6320LX130T");
+ return("XEM6320LX130T");
default:
- return ("UNKNOWN");
+ return("UNKNOWN");
}
}
+// Return 4-bit "board mode" input.
+int Rhd2000EvalBoard::getBoardMode()
+{
+ int mode;
+
+ dev->UpdateWireOuts();
+ mode = dev->GetWireOutValue(WireOutBoardMode);
+
+ cout << "Board mode: " << mode << endl << endl;
+
+ return mode;
+}
+
diff --git a/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.h b/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.h
index 5bc2749fa8ba775848e42cdf5c1d1223d30efb87..61b3aa0fb954a42959827d90215ab8afa623c90a 100755
--- a/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.h
+++ b/Source/Processors/DataThreads/rhythm-api/rhd2000evalboard.h
@@ -84,27 +84,35 @@ public:
PortD
};
- void uploadCommandList(const vector<int>& commandList, AuxCmdSlot auxCommandSlot, int bank);
- void printCommandList(const vector<int>& commandList) const;
+ void uploadCommandList(const vector<int> &commandList, AuxCmdSlot auxCommandSlot, int bank);
+ void printCommandList(const vector<int> &commandList) const;
void selectAuxCommandBank(BoardPort port, AuxCmdSlot auxCommandSlot, int bank);
void selectAuxCommandLength(AuxCmdSlot auxCommandSlot, int loopIndex, int endIndex);
+ void runImpedance();
+ bool getExternalFastSettle();
+
+
void resetBoard();
- void resetFpga();
void setContinuousRunMode(bool continuousMode);
void setMaxTimeStep(unsigned int maxTimeStep);
void run();
bool isRunning() const;
unsigned int numWordsInFifo() const;
static unsigned int fifoCapacityInWords();
-
+ void setDacThresholdVoltage(int dacChannel, float voltage_threshold);
+ void setDacThreshold(int dacChannel, int threshold, bool trigPolarity);
+ void enableDacHighpassFilter(bool enable);
+ void setDacHighpassFilter(double cutoff);
void setCableDelay(BoardPort port, int delay);
void setCableLengthMeters(BoardPort port, double lengthInMeters);
void setCableLengthFeet(BoardPort port, double lengthInFeet);
double estimateCableLengthMeters(int delay) const;
double estimateCableLengthFeet(int delay) const;
-
+ void setTtlMode(int mode);
void setDspSettle(bool enabled);
+ int getBoardMode();
+ void getDacInformation(int *ch, float *th);
enum BoardDataSource
{
@@ -128,6 +136,7 @@ public:
void setDataSource(int stream, BoardDataSource dataSource);
void enableDataStream(int stream, bool enabled);
+ bool isStreamEnabled(int streamIndex);
int getNumEnabledDataStreams() const;
void clearTtlOut();
@@ -150,16 +159,28 @@ public:
void selectDacDataStream(int dacChannel, int stream);
void selectDacDataChannel(int dacChannel, int dataChannel);
+ int gecDacDataChannel(int dacChannel);
+ void updateDacAssignment(int dacChannel, int channel);
+ void enableExternalFastSettle(bool enable);
+ void setExternalFastSettleChannel(int channel);
+ void setFastSettleByTTL(bool state);
+ void setFastSettleByTTLchannel(int channel);
+
void flush();
bool readDataBlock(Rhd2000DataBlock* dataBlock);
- bool readDataBlocks(int numBlocks, queue<Rhd2000DataBlock>& dataQueue);
- int queueToFile(queue<Rhd2000DataBlock>& dataQueue, std::ofstream& saveOut);
+ bool readDataBlocks(int numBlocks, queue<Rhd2000DataBlock> &dataQueue);
+ int queueToFile(queue<Rhd2000DataBlock> &dataQueue, std::ofstream& saveOut);
+
+ void resetFpga();
private:
okCFrontPanel* dev;
AmplifierSampleRate sampleRate;
int numDataStreams; // total number of data streams currently enabled
int dataStreamEnabled[MAX_NUM_DATA_STREAMS]; // 0 (disabled) or 1 (enabled)
+ int *dacChannelAssignment;
+ float *dacChannelThreshold;
+ bool fast_settle_enabled;
// Buffer for reading bytes from USB interface
unsigned char usbBuffer[USB_BUFFER_SIZE];
@@ -199,16 +220,23 @@ private:
WireInDacSource8 = 0x1d,
WireInDacManual1 = 0x1e,
WireInDacManual2 = 0x1f,
+ WireInMultiUse = 0x1f,
+ WireInTTLSettleChannel = 0x16,
TrigInDcmProg = 0x40,
TrigInSpiStart = 0x41,
TrigInRamWrite = 0x42,
+ TrigInDacThresh = 0x43,
+ TrigInDacHpf = 0x44,
+ TrigInExtFastSettle = 0x45,
+
WireOutNumWordsLsb = 0x20,
WireOutNumWordsMsb = 0x21,
WireOutSpiRunning = 0x22,
WireOutTtlIn = 0x23,
WireOutDataClkLocked = 0x24,
+ WireOutBoardMode = 0x25,
WireOutBoardId = 0x3e,
WireOutBoardVersion = 0x3f,
diff --git a/Source/Dsp/Bessel.cpp b/Source/Processors/Dsp/Bessel.cpp
similarity index 100%
rename from Source/Dsp/Bessel.cpp
rename to Source/Processors/Dsp/Bessel.cpp
diff --git a/Source/Dsp/Bessel.h b/Source/Processors/Dsp/Bessel.h
similarity index 100%
rename from Source/Dsp/Bessel.h
rename to Source/Processors/Dsp/Bessel.h
diff --git a/Source/Dsp/Biquad.cpp b/Source/Processors/Dsp/Biquad.cpp
similarity index 100%
rename from Source/Dsp/Biquad.cpp
rename to Source/Processors/Dsp/Biquad.cpp
diff --git a/Source/Dsp/Biquad.h b/Source/Processors/Dsp/Biquad.h
similarity index 100%
rename from Source/Dsp/Biquad.h
rename to Source/Processors/Dsp/Biquad.h
diff --git a/Source/Dsp/Butterworth.cpp b/Source/Processors/Dsp/Butterworth.cpp
similarity index 100%
rename from Source/Dsp/Butterworth.cpp
rename to Source/Processors/Dsp/Butterworth.cpp
diff --git a/Source/Dsp/Butterworth.h b/Source/Processors/Dsp/Butterworth.h
similarity index 100%
rename from Source/Dsp/Butterworth.h
rename to Source/Processors/Dsp/Butterworth.h
diff --git a/Source/Dsp/Cascade.cpp b/Source/Processors/Dsp/Cascade.cpp
similarity index 100%
rename from Source/Dsp/Cascade.cpp
rename to Source/Processors/Dsp/Cascade.cpp
diff --git a/Source/Dsp/Cascade.h b/Source/Processors/Dsp/Cascade.h
similarity index 100%
rename from Source/Dsp/Cascade.h
rename to Source/Processors/Dsp/Cascade.h
diff --git a/Source/Dsp/ChebyshevI.cpp b/Source/Processors/Dsp/ChebyshevI.cpp
similarity index 100%
rename from Source/Dsp/ChebyshevI.cpp
rename to Source/Processors/Dsp/ChebyshevI.cpp
diff --git a/Source/Dsp/ChebyshevI.h b/Source/Processors/Dsp/ChebyshevI.h
similarity index 100%
rename from Source/Dsp/ChebyshevI.h
rename to Source/Processors/Dsp/ChebyshevI.h
diff --git a/Source/Dsp/ChebyshevII.cpp b/Source/Processors/Dsp/ChebyshevII.cpp
similarity index 100%
rename from Source/Dsp/ChebyshevII.cpp
rename to Source/Processors/Dsp/ChebyshevII.cpp
diff --git a/Source/Dsp/ChebyshevII.h b/Source/Processors/Dsp/ChebyshevII.h
similarity index 100%
rename from Source/Dsp/ChebyshevII.h
rename to Source/Processors/Dsp/ChebyshevII.h
diff --git a/Source/Dsp/Common.h b/Source/Processors/Dsp/Common.h
similarity index 100%
rename from Source/Dsp/Common.h
rename to Source/Processors/Dsp/Common.h
diff --git a/Source/Dsp/Custom.cpp b/Source/Processors/Dsp/Custom.cpp
similarity index 100%
rename from Source/Dsp/Custom.cpp
rename to Source/Processors/Dsp/Custom.cpp
diff --git a/Source/Dsp/Custom.h b/Source/Processors/Dsp/Custom.h
similarity index 100%
rename from Source/Dsp/Custom.h
rename to Source/Processors/Dsp/Custom.h
diff --git a/Source/Dsp/Design.cpp b/Source/Processors/Dsp/Design.cpp
similarity index 100%
rename from Source/Dsp/Design.cpp
rename to Source/Processors/Dsp/Design.cpp
diff --git a/Source/Dsp/Design.h b/Source/Processors/Dsp/Design.h
similarity index 100%
rename from Source/Dsp/Design.h
rename to Source/Processors/Dsp/Design.h
diff --git a/Source/Dsp/Documentation.cpp b/Source/Processors/Dsp/Documentation.cpp
similarity index 100%
rename from Source/Dsp/Documentation.cpp
rename to Source/Processors/Dsp/Documentation.cpp
diff --git a/Source/Dsp/Dsp.h b/Source/Processors/Dsp/Dsp.h
similarity index 100%
rename from Source/Dsp/Dsp.h
rename to Source/Processors/Dsp/Dsp.h
diff --git a/Source/Dsp/Elliptic.cpp b/Source/Processors/Dsp/Elliptic.cpp
similarity index 100%
rename from Source/Dsp/Elliptic.cpp
rename to Source/Processors/Dsp/Elliptic.cpp
diff --git a/Source/Dsp/Elliptic.h b/Source/Processors/Dsp/Elliptic.h
similarity index 100%
rename from Source/Dsp/Elliptic.h
rename to Source/Processors/Dsp/Elliptic.h
diff --git a/Source/Dsp/Filter.cpp b/Source/Processors/Dsp/Filter.cpp
similarity index 100%
rename from Source/Dsp/Filter.cpp
rename to Source/Processors/Dsp/Filter.cpp
diff --git a/Source/Dsp/Filter.h b/Source/Processors/Dsp/Filter.h
similarity index 100%
rename from Source/Dsp/Filter.h
rename to Source/Processors/Dsp/Filter.h
diff --git a/Source/Dsp/Layout.h b/Source/Processors/Dsp/Layout.h
similarity index 100%
rename from Source/Dsp/Layout.h
rename to Source/Processors/Dsp/Layout.h
diff --git a/Source/Dsp/Legendre.cpp b/Source/Processors/Dsp/Legendre.cpp
similarity index 100%
rename from Source/Dsp/Legendre.cpp
rename to Source/Processors/Dsp/Legendre.cpp
diff --git a/Source/Dsp/Legendre.h b/Source/Processors/Dsp/Legendre.h
similarity index 100%
rename from Source/Dsp/Legendre.h
rename to Source/Processors/Dsp/Legendre.h
diff --git a/Source/Dsp/MathSupplement.h b/Source/Processors/Dsp/MathSupplement.h
similarity index 100%
rename from Source/Dsp/MathSupplement.h
rename to Source/Processors/Dsp/MathSupplement.h
diff --git a/Source/Dsp/Param.cpp b/Source/Processors/Dsp/Param.cpp
similarity index 100%
rename from Source/Dsp/Param.cpp
rename to Source/Processors/Dsp/Param.cpp
diff --git a/Source/Dsp/Params.h b/Source/Processors/Dsp/Params.h
similarity index 100%
rename from Source/Dsp/Params.h
rename to Source/Processors/Dsp/Params.h
diff --git a/Source/Dsp/PoleFilter.cpp b/Source/Processors/Dsp/PoleFilter.cpp
similarity index 100%
rename from Source/Dsp/PoleFilter.cpp
rename to Source/Processors/Dsp/PoleFilter.cpp
diff --git a/Source/Dsp/PoleFilter.h b/Source/Processors/Dsp/PoleFilter.h
similarity index 100%
rename from Source/Dsp/PoleFilter.h
rename to Source/Processors/Dsp/PoleFilter.h
diff --git a/Source/Dsp/RBJ.cpp b/Source/Processors/Dsp/RBJ.cpp
similarity index 100%
rename from Source/Dsp/RBJ.cpp
rename to Source/Processors/Dsp/RBJ.cpp
diff --git a/Source/Dsp/RBJ.h b/Source/Processors/Dsp/RBJ.h
similarity index 100%
rename from Source/Dsp/RBJ.h
rename to Source/Processors/Dsp/RBJ.h
diff --git a/Source/Dsp/RootFinder.cpp b/Source/Processors/Dsp/RootFinder.cpp
similarity index 95%
rename from Source/Dsp/RootFinder.cpp
rename to Source/Processors/Dsp/RootFinder.cpp
index c1d1e428049f494f50a05bc18bb94f5566feadde..7bed63862cda6c8ef4e32aaeee9e4255b281ecf0 100644
--- a/Source/Dsp/RootFinder.cpp
+++ b/Source/Processors/Dsp/RootFinder.cpp
@@ -33,6 +33,8 @@ THE SOFTWARE.
*******************************************************************************/
+#include <algorithm>
+
#include "Common.h"
#include "RootFinder.h"
#include <stdexcept>
diff --git a/Source/Dsp/RootFinder.h b/Source/Processors/Dsp/RootFinder.h
similarity index 100%
rename from Source/Dsp/RootFinder.h
rename to Source/Processors/Dsp/RootFinder.h
diff --git a/Source/Dsp/SmoothedFilter.h b/Source/Processors/Dsp/SmoothedFilter.h
similarity index 96%
rename from Source/Dsp/SmoothedFilter.h
rename to Source/Processors/Dsp/SmoothedFilter.h
index 0625820e0172fdc3e3f3fe5b1ea2ae3f4b5868fa..11d99c7a3cbcb01cc0b57ee60017faf917c0ed91 100644
--- a/Source/Dsp/SmoothedFilter.h
+++ b/Source/Processors/Dsp/SmoothedFilter.h
@@ -36,6 +36,8 @@ THE SOFTWARE.
#ifndef DSPFILTERS_SMOOTHEDFILTER_H
#define DSPFILTERS_SMOOTHEDFILTER_H
+#include <algorithm>
+
#include "Common.h"
#include "Filter.h"
diff --git a/Source/Dsp/State.cpp b/Source/Processors/Dsp/State.cpp
similarity index 100%
rename from Source/Dsp/State.cpp
rename to Source/Processors/Dsp/State.cpp
diff --git a/Source/Dsp/State.h b/Source/Processors/Dsp/State.h
similarity index 100%
rename from Source/Dsp/State.h
rename to Source/Processors/Dsp/State.h
diff --git a/Source/Dsp/Types.h b/Source/Processors/Dsp/Types.h
similarity index 100%
rename from Source/Dsp/Types.h
rename to Source/Processors/Dsp/Types.h
diff --git a/Source/Dsp/Utilities.h b/Source/Processors/Dsp/Utilities.h
similarity index 100%
rename from Source/Dsp/Utilities.h
rename to Source/Processors/Dsp/Utilities.h
diff --git a/Source/Processors/Editors/ChannelSelector.cpp b/Source/Processors/Editors/ChannelSelector.cpp
index d860838c3bcf1a4b58af5af56328ce82abed327d..7a82ff1b3235619b3df7ce49476520aa9f22c9a5 100755
--- a/Source/Processors/Editors/ChannelSelector.cpp
+++ b/Source/Processors/Editors/ChannelSelector.cpp
@@ -24,16 +24,15 @@
#include "ChannelSelector.h"
#include <math.h>
-#include "../RecordNode.h"
-#include "../AudioNode.h"
-#include "../ProcessorGraph.h"
+#include "../RecordNode/RecordNode.h"
+#include "../AudioNode/AudioNode.h"
+#include "../ProcessorGraph/ProcessorGraph.h"
#include "../../UI/GraphViewer.h"
ChannelSelector::ChannelSelector(bool createButtons, Font& titleFont_) :
eventsOnly(false), paramsToggled(true), paramsActive(true),
- radioStatus(false), isNotSink(createButtons), moveRight(false),
- moveLeft(false), offsetLR(0), offsetUD(0), desiredOffset(0),
- titleFont(titleFont_), acquisitionIsActive(false)
+ recActive(true), radioStatus(false), isNotSink(createButtons),
+ moveRight(false), moveLeft(false), offsetLR(0), offsetUD(0), desiredOffset(0), titleFont(titleFont_), acquisitionIsActive(false)
{
// initialize buttons
@@ -341,6 +340,31 @@ void ChannelSelector::activateButtons()
}
+void ChannelSelector::inactivateRecButtons()
+{
+
+ recActive = false;
+
+ for (int i = 0; i < recordButtons.size(); i++)
+ {
+ recordButtons[i]->setActive(false);
+ recordButtons[i]->repaint();
+ }
+}
+
+void ChannelSelector::activateRecButtons()
+{
+
+ recActive = true;
+
+ for (int i = 0; i < recordButtons.size(); i++)
+ {
+ recordButtons[i]->setActive(true);
+ recordButtons[i]->repaint();
+ }
+
+}
+
void ChannelSelector::startAcquisition()
{
acquisitionIsActive = true;
diff --git a/Source/Processors/Editors/ChannelSelector.h b/Source/Processors/Editors/ChannelSelector.h
index e71ee2983a0db992fa4c024906832cab79f614d9..7db6ef2b4cd6da32aec68ecda17f6142b46e34fe 100755
--- a/Source/Processors/Editors/ChannelSelector.h
+++ b/Source/Processors/Editors/ChannelSelector.h
@@ -25,10 +25,10 @@
#define __CHANNELSELECTOR_H_68124E35__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
#include "../../AccessClass.h"
-#include "../Channel.h"
+#include "../Channel/Channel.h"
#include <stdio.h>
@@ -115,6 +115,12 @@ public:
/** Activates all the ChannelSelectorButtons under the "param" tab.*/
void activateButtons();
+ /** Inactivates all the ChannelSelectorButtons under the "rec" tab.*/
+ void inactivateRecButtons();
+
+ /** Activates all the ChannelSelectorButtons under the "rec" tab.*/
+ void activateRecButtons();
+
/** Refreshes Parameter Colors on change*/
void refreshParameterColors()
{
@@ -160,6 +166,7 @@ private:
bool paramsToggled;
bool paramsActive;
+ bool recActive;
bool radioStatus;
bool isNotSink;
diff --git a/Source/Processors/Editors/ElectrodeButtons.cpp b/Source/Processors/Editors/ElectrodeButtons.cpp
index b7b9b6583705544da0f306e05545c19cfc8a586b..01fa726a165f8afae858bd863ef0db9b36d243a1 100644
--- a/Source/Processors/Editors/ElectrodeButtons.cpp
+++ b/Source/Processors/Editors/ElectrodeButtons.cpp
@@ -48,6 +48,11 @@ void ElectrodeButton::paintButton(Graphics& g, bool isMouseOver, bool isButtonDo
g.setColour(Colours::grey);
}
+ if (chan < 100)
+ g.setFont(10.f);
+ else
+ g.setFont(8.f);
+
if (chan >= 0)
g.drawText(getButtonText(),0,0,getWidth(),getHeight(),Justification::centred,true);
}
@@ -78,4 +83,5 @@ void ElectrodeEditorButton::paintButton(Graphics& g, bool isMouseOver, bool isBu
g.setFont(font);
g.drawText(name,0,0,getWidth(),getHeight(),Justification::left,true);
-}
\ No newline at end of file
+}
+
diff --git a/Source/Processors/Editors/ElectrodeButtons.h b/Source/Processors/Editors/ElectrodeButtons.h
index 00b3f0427593fb5888564102a9f1321c2855d17b..31373746e1db3181c95607ad737f85ce2909014e 100644
--- a/Source/Processors/Editors/ElectrodeButtons.h
+++ b/Source/Processors/Editors/ElectrodeButtons.h
@@ -34,6 +34,7 @@
*/
+
class ElectrodeButton : public Button
{
public:
diff --git a/Source/Processors/Editors/GenericEditor.cpp b/Source/Processors/Editors/GenericEditor.cpp
index 0079d14a90341a65fc866b612e814e352a63ea57..47e10ca283f4aee231ad38ca2b22e41ef906c4cb 100755
--- a/Source/Processors/Editors/GenericEditor.cpp
+++ b/Source/Processors/Editors/GenericEditor.cpp
@@ -23,10 +23,10 @@
#include "GenericEditor.h"
-#include "ParameterEditor.h"
+#include "../Parameter/ParameterEditor.h"
#include "ChannelSelector.h"
-#include "../ProcessorGraph.h"
-#include "../RecordNode.h"
+#include "../ProcessorGraph/ProcessorGraph.h"
+#include "../RecordNode/RecordNode.h"
#include "../../UI/ProcessorList.h"
#include "../../UI/EditorViewport.h"
@@ -39,8 +39,8 @@
GenericEditor::GenericEditor(GenericProcessor* owner, bool useDefaultParameterEditors=true)
: AudioProcessorEditor(owner),
desiredWidth(150), isFading(false), accumulator(0.0), acquisitionIsActive(false),
- drawerButton(0), channelSelector(0),drawerWidth(170),
- isSelected(false), isEnabled(true), isCollapsed(false), tNum(-1), drawerOpen(false)
+ drawerButton(0), drawerWidth(170),
+ drawerOpen(false), channelSelector(0), isSelected(false), isEnabled(true), isCollapsed(false), tNum(-1)
{
constructorInitialize(owner, useDefaultParameterEditors);
}
@@ -280,6 +280,18 @@ void GenericEditor::setEnabledState(bool t)
isEnabled = p->enabledState();
}
+void GenericEditor::startRecording()
+{
+ if (channelSelector != 0)
+ channelSelector->inactivateRecButtons();
+}
+
+void GenericEditor::stopRecording()
+{
+ if (channelSelector != 0)
+ channelSelector->activateRecButtons();
+}
+
void GenericEditor::startAcquisition()
{
@@ -961,13 +973,13 @@ void TriangleButton::paintButton(Graphics& g, bool isMouseOver, bool isButtonDow
x2 = getWidth()/2;
x3 = getWidth()-inset;
- if (direction == 1)
+ if (direction == 1) // up
{
y1 = getHeight()-inset;
y2 = inset;
}
- else
+ else if (direction == 2) // down
{
y1 = inset;
y2 = getHeight()-inset;
diff --git a/Source/Processors/Editors/GenericEditor.h b/Source/Processors/Editors/GenericEditor.h
index 71fdef743c10b3ef0cc2e88e1eb6365334fc836f..f335d7e29ff25ae5d6bdb68f5c7da59fc7809f21 100755
--- a/Source/Processors/Editors/GenericEditor.h
+++ b/Source/Processors/Editors/GenericEditor.h
@@ -25,10 +25,10 @@
#define __GENERICEDITOR_H_DD406E71__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#include "../../AccessClass.h"
-#include "../Channel.h"
+#include "../Channel/Channel.h"
#include <stdio.h>
@@ -108,6 +108,12 @@ public:
/** Used to enable or disable an editor's processor.*/
void setEnabledState(bool);
+ /** Called at the start of a recording **/
+ void startRecording();
+
+ /** Called at the end of a recording **/
+ void stopRecording();
+
/** Called just prior to the start of acquisition, to allow the editor to prepare.*/
virtual void startAcquisition();
diff --git a/Source/Processors/EventDetector.cpp b/Source/Processors/EventDetector/EventDetector.cpp
similarity index 94%
rename from Source/Processors/EventDetector.cpp
rename to Source/Processors/EventDetector/EventDetector.cpp
index 32738b2c9af3a7407e17e28c6c166dc8c2ed991f..4afe33258a5e9c1c87e3c02bf39ea6cfa9532850 100755
--- a/Source/Processors/EventDetector.cpp
+++ b/Source/Processors/EventDetector/EventDetector.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/EventDetector.h b/Source/Processors/EventDetector/EventDetector.h
similarity index 88%
rename from Source/Processors/EventDetector.h
rename to Source/Processors/EventDetector/EventDetector.h
index 79ba743821441d1bfa41a6dfc4cc37311b565306..d99efdc26e54da857e02bda0ccdc926bab96c8d2 100755
--- a/Source/Processors/EventDetector.h
+++ b/Source/Processors/EventDetector/EventDetector.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,8 +24,8 @@
#ifndef __EVENTDETECTOR_H_91811542__
#define __EVENTDETECTOR_H_91811542__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/EventNode.cpp b/Source/Processors/EventNode/EventNode.cpp
similarity index 93%
rename from Source/Processors/EventNode.cpp
rename to Source/Processors/EventNode/EventNode.cpp
index a9a4e05a35b04fd6bc637256e6ae563027f86f66..4c96d18b78fa3e046efce1d9f889e78815ee94e9 100755
--- a/Source/Processors/EventNode.cpp
+++ b/Source/Processors/EventNode/EventNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,7 +24,7 @@
#include <stdio.h>
#include "EventNode.h"
-#include "Channel.h"
+#include "../Channel/Channel.h"
EventNode::EventNode()
: GenericProcessor("Event Generator"), accumulator(0), Hz(1)
diff --git a/Source/Processors/EventNode.h b/Source/Processors/EventNode/EventNode.h
similarity index 86%
rename from Source/Processors/EventNode.h
rename to Source/Processors/EventNode/EventNode.h
index 1f356c7f0df0ca8480ff3b5b2db37d8850da3cba..8f5e03f5fa582097972eb7afbe7960bcc9112162 100755
--- a/Source/Processors/EventNode.h
+++ b/Source/Processors/EventNode/EventNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,9 +24,9 @@
#ifndef __EVENTNODE_H_9B67A789__
#define __EVENTNODE_H_9B67A789__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/EventNodeEditor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "EventNodeEditor.h"
/**
diff --git a/Source/Processors/Editors/EventNodeEditor.cpp b/Source/Processors/EventNode/EventNodeEditor.cpp
similarity index 93%
rename from Source/Processors/Editors/EventNodeEditor.cpp
rename to Source/Processors/EventNode/EventNodeEditor.cpp
index 21ef6bbb1b171fa0b10002ed09106eb151ba5bae..9a75f55ddc4b401d96a39a89de923e63c8bab134 100755
--- a/Source/Processors/Editors/EventNodeEditor.cpp
+++ b/Source/Processors/EventNode/EventNodeEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "EventNodeEditor.h"
-#include "ChannelSelector.h"
+#include "../Editors/ChannelSelector.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/EventNodeEditor.h b/Source/Processors/EventNode/EventNodeEditor.h
similarity index 91%
rename from Source/Processors/Editors/EventNodeEditor.h
rename to Source/Processors/EventNode/EventNodeEditor.h
index 4ee8c002b2aae2a58c5433a3b87226a3b0fbea8c..10440ff595e4161835cba0638fadfcbc25312ab6 100755
--- a/Source/Processors/Editors/EventNodeEditor.h
+++ b/Source/Processors/EventNode/EventNodeEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,7 +26,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
class FilterViewport;
diff --git a/Source/Processors/ExampleProcessor.cpp b/Source/Processors/ExampleProcessor/ExampleProcessor.cpp
similarity index 98%
rename from Source/Processors/ExampleProcessor.cpp
rename to Source/Processors/ExampleProcessor/ExampleProcessor.cpp
index f90f90615939c2821c5c33e74d09aa8db0e4b9c6..2ebc64073b709fe6e2ef9a954e1bcd82139e285c 100644
--- a/Source/Processors/ExampleProcessor.cpp
+++ b/Source/Processors/ExampleProcessor/ExampleProcessor.cpp
@@ -3,7 +3,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/ExampleProcessor.h b/Source/Processors/ExampleProcessor/ExampleProcessor.h
similarity index 98%
rename from Source/Processors/ExampleProcessor.h
rename to Source/Processors/ExampleProcessor/ExampleProcessor.h
index cdc59987986a4c888e8f262941325bef7619bf36..7bf796cef1dd14f9eca571bacadad22ef1b11d1d 100644
--- a/Source/Processors/ExampleProcessor.h
+++ b/Source/Processors/ExampleProcessor/ExampleProcessor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/FPGAOutput.cpp b/Source/Processors/FPGAOutput/FPGAOutput.cpp
similarity index 94%
rename from Source/Processors/FPGAOutput.cpp
rename to Source/Processors/FPGAOutput/FPGAOutput.cpp
index 8f09a95cfe0d593181284bbd68e1e2e0b909391c..6e313cea80263e8b1158d592cb47fa93a3582125 100755
--- a/Source/Processors/FPGAOutput.cpp
+++ b/Source/Processors/FPGAOutput/FPGAOutput.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#include <stdio.h>
#include "FPGAOutput.h"
-#include "SourceNode.h"
+#include "../SourceNode/SourceNode.h"
FPGAOutput::FPGAOutput()
: GenericProcessor("FPGA Output"), TTLchannel(3),
diff --git a/Source/Processors/FPGAOutput.h b/Source/Processors/FPGAOutput/FPGAOutput.h
similarity index 86%
rename from Source/Processors/FPGAOutput.h
rename to Source/Processors/FPGAOutput/FPGAOutput.h
index a973a6681346d2a4ef422714561b4134454f190d..8c1b3d5ae7f235f36acbf869b42da0866f8aabdd 100755
--- a/Source/Processors/FPGAOutput.h
+++ b/Source/Processors/FPGAOutput/FPGAOutput.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,10 +24,10 @@
#ifndef __FPGAOUTPUT_H_33275017__
#define __FPGAOUTPUT_H_33275017__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/FPGAOutputEditor.h"
-#include "DataThreads/FPGAThread.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "FPGAOutputEditor.h"
+#include "../DataThreads/FPGAThread.h"
/**
diff --git a/Source/Processors/Editors/FPGAOutputEditor.cpp b/Source/Processors/FPGAOutput/FPGAOutputEditor.cpp
similarity index 94%
rename from Source/Processors/Editors/FPGAOutputEditor.cpp
rename to Source/Processors/FPGAOutput/FPGAOutputEditor.cpp
index b3805b6e02f002ed20cc557fc71e062bbd7d55fc..d30630af179da390b7879705be25278ffd7396f7 100644
--- a/Source/Processors/Editors/FPGAOutputEditor.cpp
+++ b/Source/Processors/FPGAOutput/FPGAOutputEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/FPGAOutputEditor.h b/Source/Processors/FPGAOutput/FPGAOutputEditor.h
similarity index 89%
rename from Source/Processors/Editors/FPGAOutputEditor.h
rename to Source/Processors/FPGAOutput/FPGAOutputEditor.h
index 15a7f39a11306af830da125604cab0b9a1e461f2..de9239b8fc5375dbf8599cfd93f8a9a896369cd6 100644
--- a/Source/Processors/Editors/FPGAOutputEditor.h
+++ b/Source/Processors/FPGAOutput/FPGAOutputEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,8 +25,8 @@
#define __FPGAOUTPUTEDITOR_H_5A646CD3__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ImageIcon.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ImageIcon.h"
class ImageIcon;
diff --git a/Source/Processors/FileReader.cpp b/Source/Processors/FileReader/FileReader.cpp
similarity index 94%
rename from Source/Processors/FileReader.cpp
rename to Source/Processors/FileReader/FileReader.cpp
index b4c239f9b70163c23684173e2bdc6d794ef88259..1e46bcfffee705c834cad1fb0784c303d60195b6 100644
--- a/Source/Processors/FileReader.cpp
+++ b/Source/Processors/FileReader/FileReader.cpp
@@ -22,7 +22,7 @@
*/
#include "FileReader.h"
-#include "Editors/FileReaderEditor.h"
+#include "FileReaderEditor.h"
#include <stdio.h>
FileReader::FileReader()
diff --git a/Source/Processors/FileReader.h b/Source/Processors/FileReader/FileReader.h
similarity index 91%
rename from Source/Processors/FileReader.h
rename to Source/Processors/FileReader/FileReader.h
index 6195960fd3815911ec91d146916d3fd6e6f060d4..d5f0ca28cd0ffdd53726b3dbb125e7c681776014 100644
--- a/Source/Processors/FileReader.h
+++ b/Source/Processors/FileReader/FileReader.h
@@ -26,9 +26,9 @@
#define __FILEREADER_H_B327D3D2__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#define BUFFER_SIZE 102400
diff --git a/Source/Processors/Editors/FileReaderEditor.cpp b/Source/Processors/FileReader/FileReaderEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/FileReaderEditor.cpp
rename to Source/Processors/FileReader/FileReaderEditor.cpp
index 0a037164e06dd20d6f12a58b96cd5678f06157b8..c565aa3ec893b29b56f835fe923486ecc9bf4fb4 100644
--- a/Source/Processors/Editors/FileReaderEditor.cpp
+++ b/Source/Processors/FileReader/FileReaderEditor.cpp
@@ -23,7 +23,7 @@
#include "FileReaderEditor.h"
-#include "../FileReader.h"
+#include "FileReader.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/FileReaderEditor.h b/Source/Processors/FileReader/FileReaderEditor.h
similarity index 94%
rename from Source/Processors/Editors/FileReaderEditor.h
rename to Source/Processors/FileReader/FileReaderEditor.h
index 1e789d5ffa5ccc09473a39dc17dd30b5be086bc6..d359796c7a77afc7d4e96c2409e81aa5e8cceabe 100644
--- a/Source/Processors/Editors/FileReaderEditor.h
+++ b/Source/Processors/FileReader/FileReaderEditor.h
@@ -26,7 +26,7 @@
#define __FILEREADEREDITOR_H_D6EC8B48__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
class FileReader;
diff --git a/Source/Processors/Editors/FilterEditor.cpp b/Source/Processors/FilterNode/FilterEditor.cpp
similarity index 96%
rename from Source/Processors/Editors/FilterEditor.cpp
rename to Source/Processors/FilterNode/FilterEditor.cpp
index 6609141f87ae08c6358f9de7cabc56c6b418d1b0..2ac69c04bc72aadcffdaa4036c61dd2f762d50d5 100755
--- a/Source/Processors/Editors/FilterEditor.cpp
+++ b/Source/Processors/FilterNode/FilterEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "FilterEditor.h"
-#include "../FilterNode.h"
+#include "FilterNode.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/FilterEditor.h b/Source/Processors/FilterNode/FilterEditor.h
similarity index 92%
rename from Source/Processors/Editors/FilterEditor.h
rename to Source/Processors/FilterNode/FilterEditor.h
index d691ad6f3793db445c3490278a5dbac7233e5eb4..717cfe874ef3847f9e4718b836eb6edeb4947550 100755
--- a/Source/Processors/Editors/FilterEditor.h
+++ b/Source/Processors/FilterNode/FilterEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,7 +26,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
class FilterViewport;
diff --git a/Source/Processors/FilterNode.cpp b/Source/Processors/FilterNode/FilterNode.cpp
similarity index 95%
rename from Source/Processors/FilterNode.cpp
rename to Source/Processors/FilterNode/FilterNode.cpp
index 9c38eb22fa8080f921bf9af659897e57c9692455..04b92d3c607a4e16961349d47ff37e46424f0734 100755
--- a/Source/Processors/FilterNode.cpp
+++ b/Source/Processors/FilterNode/FilterNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,7 @@
#include <stdio.h>
#include "FilterNode.h"
-#include "Editors/FilterEditor.h"
+#include "FilterEditor.h"
FilterNode::FilterNode()
: GenericProcessor("Bandpass Filter"), defaultLowCut(300.0f), defaultHighCut(6000.0f)
@@ -281,7 +281,7 @@ void FilterNode::setApplyOnADC(bool state)
for (int n = 0; n < channels.size(); n++)
{
- if (channels[n]->isADCchannel)
+ if (channels[n]->getType() == ADC_CHANNEL)
{
setCurrentChannel(n);
diff --git a/Source/Processors/FilterNode.h b/Source/Processors/FilterNode/FilterNode.h
similarity index 90%
rename from Source/Processors/FilterNode.h
rename to Source/Processors/FilterNode/FilterNode.h
index b07818fc78d851d3fd402e04e17a71f1ed55b658..4a0b9886f5ccbd55caae574b493aa6ca59defff2 100755
--- a/Source/Processors/FilterNode.h
+++ b/Source/Processors/FilterNode/FilterNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,9 +24,9 @@
#ifndef __FILTERNODE_H_CED428E__
#define __FILTERNODE_H_CED428E__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include "../Dsp/Dsp.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/GenericProcessor.cpp b/Source/Processors/GenericProcessor/GenericProcessor.cpp
similarity index 94%
rename from Source/Processors/GenericProcessor.cpp
rename to Source/Processors/GenericProcessor/GenericProcessor.cpp
index 09a7e2e27f70fa965f4a94de3f3929e4c98d863b..73f6e3fdf1778ffab402ca09b67b95f470fce6d3 100755
--- a/Source/Processors/GenericProcessor.cpp
+++ b/Source/Processors/GenericProcessor/GenericProcessor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,12 +22,12 @@
*/
#include "GenericProcessor.h"
-#include "../UI/UIComponent.h"
+#include "../../UI/UIComponent.h"
GenericProcessor::GenericProcessor(const String& name_) : AccessClass(),
sourceNode(0), destNode(0), isEnabled(true), wasConnected(false),
nextAvailableChannel(0), saveOrder(-1), loadOrder(-1), currentChannel(-1),
- parametersAsXml(nullptr), name(name_), paramsWereLoaded(false), editor(0), sendSampleCount(true)
+ editor(0), parametersAsXml(nullptr), sendSampleCount(true), name(name_), paramsWereLoaded(false)
{
settings.numInputs = settings.numOutputs = settings.sampleRate = 0;
@@ -360,7 +360,7 @@ void GenericProcessor::update()
ch->setName("ADC"+String(1+i-(numChan-numADC_Chan)));
if (i >= numChan-numADC_Chan)
- ch->isADCchannel = true;
+ ch->getType() == ADC_CHANNEL;
ch->sampleRate = getDefaultSampleRate();
@@ -412,6 +412,23 @@ void GenericProcessor::setAllChannelsToRecord()
}
+void GenericProcessor::setRecording(bool state)
+{
+ GenericEditor* ed = getEditor();
+ if (state)
+ {
+ if (ed != 0)
+ ed->startRecording();
+ startRecording();
+ }
+ else
+ {
+ if (ed != 0)
+ ed->stopRecording();
+ stopRecording();
+ }
+}
+
void GenericProcessor::enableEditor()
{
diff --git a/Source/Processors/GenericProcessor.h b/Source/Processors/GenericProcessor/GenericProcessor.h
similarity index 90%
rename from Source/Processors/GenericProcessor.h
rename to Source/Processors/GenericProcessor/GenericProcessor.h
index c4e6a8aa64d65014d8a929599e96072a9ddac6cf..2719bdfd58fa91347623d5e9f7f6bdc971057d77 100755
--- a/Source/Processors/GenericProcessor.h
+++ b/Source/Processors/GenericProcessor/GenericProcessor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,11 +24,14 @@
#ifndef __GENERICPROCESSOR_H_1F469DAF__
#define __GENERICPROCESSOR_H_1F469DAF__
+enum channelType {DATA_CHANNEL = 0, AUX_CHANNEL = 1, ADC_CHANNEL = 2, EVENT_CHANNEL = 3};
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "Editors/GenericEditor.h"
-#include "Parameter.h"
-#include "../AccessClass.h"
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../Editors/GenericEditor.h"
+#include "../Parameter/Parameter.h"
+#include "../../AccessClass.h"
+#include "../Channel/Channel.h"
#include <time.h>
#include <stdio.h>
@@ -57,6 +60,7 @@ class Channel;
*/
+
class GenericProcessor : public AudioProcessor,
public AccessClass
@@ -128,12 +132,30 @@ public:
{
return GenericProcessor::unusedNameString;
}
-
/** Returns the name of the output channel with a given index.*/
virtual const String getOutputChannelName(int channelIndex) const
{
return GenericProcessor::unusedNameString;
}
+
+ /** returns the names and types of all data, aux and adc channels */
+ virtual void getChannelsInfo(StringArray &Names, Array<channelType> &type, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains)
+ {
+
+ }
+
+ virtual int modifyChannelName(channelType t, int stream, int ch, String newName, bool updateSignalChain)
+ {
+ return -1;
+ }
+
+ virtual int modifyChannelGain(channelType t, int stream, int ch, float newGain, bool updateSignalChain)
+ {
+ return -1;
+ }
+ virtual void getEventChannelNames(StringArray &Names)
+ {
+ }
/** Returns the name of the parameter with a given index.*/
const String getParameterName(int parameterIndex);
@@ -277,7 +299,7 @@ public:
return 2;
}
- virtual int getDefaultADCoutputs()
+ virtual int getDefaultADCoutputs()
{
return 0;
}
@@ -365,7 +387,7 @@ public:
{
return false;
}
-
+
/** Returns true if a processor is a utility (non-merger or splitter), false otherwise.*/
virtual bool isUtility()
{
@@ -399,10 +421,13 @@ public:
return true;
}
- /** Called whenever recording has started. */
+ /** Called when recording starts/stops **/
+ void setRecording(bool state);
+
+ /** Called from setRecording whenever recording has started. */
virtual void startRecording() { }
- /** Called whenever recording has stopped. */
+ /** Called from setRecording whenever recording has stopped. */
virtual void stopRecording() { }
/** Informs a processor's editor that data acquisition is about to begin. */
@@ -477,7 +502,8 @@ public:
CONTINUOUS = 6,
NETWORK = 7,
EYE_POSITION = 8,
- SERIAL = 9
+ SERIAL = 9,
+ MESSAGE = 10
};
enum eventChannelTypes
@@ -544,7 +570,6 @@ public:
/** Toggles record ON for all channels */
void setAllChannelsToRecord();
-
/** Each processor has a unique integer ID that can be used to identify it.*/
int nodeId;
@@ -585,10 +610,7 @@ public:
virtual void loadCustomChannelParametersFromXml(XmlElement* channelElement, bool isEventChannel=false);
/** handle messages from other processors */
- virtual String interProcessorCommunication(String command)
- {
- return String("OK");
- };
+ virtual String interProcessorCommunication(String command) { return String("OK"); };
/** Holds loaded parameters */
XmlElement* parametersAsXml;
@@ -596,8 +618,6 @@ public:
/** When set to false, this disables the sending of sample counts through the event buffer. */
bool sendSampleCount;
- bool paramsWereLoaded;
-
private:
/** Automatically extracts the number of samples in the buffer, then
@@ -621,6 +641,7 @@ private:
/** For getInputChannelName() and getOutputChannelName() */
static const String unusedNameString;
+ bool paramsWereLoaded;
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(GenericProcessor);
diff --git a/Source/Processors/Visualization/LfpDisplayCanvas.cpp b/Source/Processors/LfpDisplayNode/LfpDisplayCanvas.cpp
similarity index 89%
rename from Source/Processors/Visualization/LfpDisplayCanvas.cpp
rename to Source/Processors/LfpDisplayNode/LfpDisplayCanvas.cpp
index e3b567e11986d6e077be92c50d37d89dc5a48e46..15ad29b6a6cc22bc4ad3af2b322fd7688b4109ad 100755
--- a/Source/Processors/Visualization/LfpDisplayCanvas.cpp
+++ b/Source/Processors/LfpDisplayNode/LfpDisplayCanvas.cpp
@@ -105,11 +105,12 @@ LfpDisplayCanvas::LfpDisplayCanvas(LfpDisplayNode* processor_) :
spreads.add("30");
spreads.add("40");
spreads.add("50");
- spreads.add("60");
- spreads.add("70");
- spreads.add("80");
- spreads.add("90");
- spreads.add("100");
+ spreads.add("60");
+ spreads.add("70");
+ spreads.add("80");
+ spreads.add("90");
+ spreads.add("100");
+ spreads.add("100");
colorGroupings.add("1");
colorGroupings.add("2");
@@ -365,22 +366,22 @@ void LfpDisplayCanvas::setParameter(int param, float val)
void LfpDisplayCanvas:: setRangeSelection(float range)
{
- //rangeSelection->setItemEnabled(0,true); //keep custom range unavailable for direct selection
- rangeSelection->setSelectedId(1,true); // but show it for display
- rangeSelection->changeItemText(1,String(int(range))); // and set to correct number
+ //rangeSelection->setItemEnabled(0,true); //keep custom range unavailable for direct selection
+ rangeSelection->setSelectedItemIndex(0, sendNotificationAsync); // but show it for display
+ rangeSelection->changeItemText(1, String(int(range))); // and set to correct number
- repaint();
- refresh();
+ repaint();
+ refresh();
}
void LfpDisplayCanvas:: setSpreadSelection(int spread)
{
- spreadSelection->setSelectedId(1,true);
- spreadSelection->changeItemText(1,String(int(spread))); // and set to correct number
+ spreadSelection->setSelectedItemIndex(0, sendNotificationAsync);
+ spreadSelection->changeItemText(1, String(int(spread))); // and set to correct number
- repaint();
- refresh();
+ repaint();
+ refresh();
}
@@ -644,7 +645,7 @@ bool LfpDisplayCanvas::keyPressed(const KeyPress& key)
{
if (key.getKeyCode() == key.spaceKey)
{
- pauseButton->setToggleState(!pauseButton->getToggleState(),true);
+ pauseButton->setToggleState(!pauseButton->getToggleState(), sendNotification);
return true;
}
@@ -823,7 +824,7 @@ void LfpTimescale::setTimebase(float t)
// ---------------------------------------------------------------
LfpDisplay::LfpDisplay(LfpDisplayCanvas* c, Viewport* v) :
- canvas(c), viewport(v), range(1000.0f), singleChan(-1)
+ singleChan(-1), canvas(c), viewport(v), range(1000.0f)
{
totalHeight = 0;
@@ -1170,13 +1171,14 @@ void LfpDisplay::mouseWheelMove(const MouseEvent& e, const MouseWheelDetails&
void LfpDisplay::toggleSingleChannel(int chan)
{
- std::cout << "Toggle channel " << chan << std::endl;
+ //std::cout << "Toggle channel " << chan << std::endl;
+
if (chan != singleChan)
{
singleChan = chan;
int newHeight = viewport->getHeight();
- setChannelHeight(newHeight,false);
- setSize(getWidth(),numChans*getChannelHeight());
+ setChannelHeight(newHeight, false);
+ setSize(getWidth(), numChans*getChannelHeight());
viewport->setScrollBarsShown(false,false);
//viewport->setViewPosition(Point<int>(0,chan*newHeight));
for (int n = 0; n < numChans; n++)
@@ -1204,22 +1206,22 @@ void LfpDisplay::mouseDown(const MouseEvent& event)
MouseEvent canvasevent = event.getEventRelativeTo(viewport);
int y = canvasevent.getMouseDownY() + viewport->getViewPositionY(); // need to account for scrolling
- int dist=0;
- int mindist=10000;
- int closest=5;
+ int dist = 0;
+ int mindist = 10000;
+ int closest = 5;
for (int n = 0; n < numChans; n++) // select closest instead of relying ot eventComponent
{
channels[n]->deselect();
- int cpos=(channels[n]->getY() + (channels[n]->getHeight()/2));
- dist=int(abs(y - cpos));
+ int cpos = (channels[n]->getY() + (channels[n]->getHeight()/2));
+ dist = int(abs(y - cpos));
//std::cout << "Mouse down at " << y << " pos is "<< cpos << "n:" << n << " dist " << dist << std::endl;
if (dist<mindist)
{
- mindist=dist-1;
- closest=n;
+ mindist = dist-1;
+ closest = n;
}
}
@@ -1227,7 +1229,9 @@ void LfpDisplay::mouseDown(const MouseEvent& event)
//lcd->select();
channels[closest]->select();
- if (event.getNumberOfClicks() == 2) toggleSingleChannel(closest);
+
+ if (event.getNumberOfClicks() == 2)
+ toggleSingleChannel(closest);
canvas->fullredraw = true;//issue full redraw
@@ -1307,10 +1311,10 @@ LfpChannelDisplay::~LfpChannelDisplay()
void LfpChannelDisplay::setEnabledState(bool state)
{
- if (state)
- std::cout << "Setting channel " << name << " to true." << std::endl;
- else
- std::cout << "Setting channel " << name << " to false." << std::endl;
+ //if (state)
+ //std::cout << "Setting channel " << name << " to true." << std::endl;
+ //else
+ //std::cout << "Setting channel " << name << " to false." << std::endl;
isEnabled = state;
@@ -1325,8 +1329,6 @@ void LfpChannelDisplay::paint(Graphics& g)
g.drawLine(canvas->screenBufferIndex+1, 0, canvas->screenBufferIndex+1, getHeight());
-
-
//g.setColour(Colours::red); // draw oldest drawn sample position
//g.drawLine(canvas->lastScreenBufferIndex, 0, canvas->lastScreenBufferIndex, getHeight()-channelOverlap);
@@ -1343,9 +1345,33 @@ void LfpChannelDisplay::paint(Graphics& g)
g.drawLine(0,center+channelHeight/2,getWidth(),center+channelHeight/2);
g.drawLine(0,center-channelHeight/2,getWidth(),center-channelHeight/2);
- g.setColour(Colour(25,25,25));
- g.drawLine(0,center+channelHeight/4,10,center+channelHeight/4);
- g.drawLine(0,center-channelHeight/4,10,center-channelHeight/4);
+ if (!display->getSingleChannelState())
+ {
+ g.setColour(Colour(25,25,25));
+ g.drawLine(0,center+channelHeight/4,10,center+channelHeight/4);
+ g.drawLine(0,center-channelHeight/4,10,center-channelHeight/4);
+ } else {
+ g.setColour(Colour(70,70,70));
+ g.drawLine(0,center+channelHeight/4,getWidth(),center+channelHeight/4);
+ g.drawLine(0,center-channelHeight/4,getWidth(),center-channelHeight/4);
+ }
+
+
+ }
+
+ if (display->getSingleChannelState())
+ {
+
+ int leftEdge = 150;
+
+ g.setColour(Colours::lightgrey);
+ g.setFont(channelFont);
+ g.setFont(20);
+ g.drawText(String(0) + " uV", 20, center, leftEdge, 25, Justification::left, false);
+ g.drawText(String(range/2) + " uV", 20, center-channelHeight/2, leftEdge, 25, Justification::left, false);
+ g.drawText(String(-range/2) + " uV", 20, center+channelHeight/2-25, leftEdge, 25, Justification::left, false);
+ g.drawText(String(range/4) + " uV", 20, center-channelHeight/4, leftEdge, 25, Justification::left, false);
+ g.drawText(String(-range/4) + " uV", 20, center+channelHeight/4, leftEdge, 25, Justification::left, false);
}
@@ -1561,7 +1587,7 @@ LfpChannelDisplayInfo::LfpChannelDisplayInfo(LfpDisplayCanvas* canvas_, LfpDispl
chan = ch;
- enableButton = new UtilityButton("CH"+String(ch+1), Font("Small Text", 13, Font::plain));
+ enableButton = new UtilityButton(String(ch+1), Font("Small Text", 13, Font::plain));
enableButton->setRadius(5.0f);
enableButton->setEnabledState(true);
@@ -1590,7 +1616,7 @@ void LfpChannelDisplayInfo::buttonClicked(Button* button)
// b->setLabel("OFF");
// }
- std::cout << "Turn channel " << chan << " to " << button->getToggleState() << std::endl;
+ //std::cout << "Turn channel " << chan << " to " << button->getToggleState() << std::endl;
}
@@ -1606,7 +1632,10 @@ void LfpChannelDisplayInfo::paint(Graphics& g)
g.setColour(lineColour);
- g.fillRoundedRectangle(5,center-8,41,22,8.0f);
+ //if (chan > 98)
+ // g.fillRoundedRectangle(5,center-8,51,22,8.0f);
+ //else
+ g.fillRoundedRectangle(5,center-8,41,22,8.0f);
// g.setFont(channelFont);
// g.setFont(channelHeightFloat*0.3);
@@ -1620,7 +1649,10 @@ void LfpChannelDisplayInfo::resized()
int center = getHeight()/2;
- enableButton->setBounds(8,center-5,35,16);
+ //if (chan > 98)
+ // enableButton->setBounds(8,center-5,45,16);
+ //else
+ enableButton->setBounds(8,center-5,35,16);
}
diff --git a/Source/Processors/Visualization/LfpDisplayCanvas.h b/Source/Processors/LfpDisplayNode/LfpDisplayCanvas.h
similarity index 95%
rename from Source/Processors/Visualization/LfpDisplayCanvas.h
rename to Source/Processors/LfpDisplayNode/LfpDisplayCanvas.h
index c22746500f63ebcb5089e79438f128a7531dd0fb..7f2064bb4adfc032041cd1b2dc85c5176aba495f 100755
--- a/Source/Processors/Visualization/LfpDisplayCanvas.h
+++ b/Source/Processors/LfpDisplayNode/LfpDisplayCanvas.h
@@ -24,8 +24,8 @@
#define __LFPDISPLAYCANVAS_H_B711873A__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../LfpDisplayNode.h"
-#include "Visualizer.h"
+#include "LfpDisplayNode.h"
+#include "../Visualization/Visualizer.h"
class LfpDisplayNode;
diff --git a/Source/Processors/Editors/LfpDisplayEditor.cpp b/Source/Processors/LfpDisplayNode/LfpDisplayEditor.cpp
similarity index 100%
rename from Source/Processors/Editors/LfpDisplayEditor.cpp
rename to Source/Processors/LfpDisplayNode/LfpDisplayEditor.cpp
diff --git a/Source/Processors/Editors/LfpDisplayEditor.h b/Source/Processors/LfpDisplayNode/LfpDisplayEditor.h
similarity index 88%
rename from Source/Processors/Editors/LfpDisplayEditor.h
rename to Source/Processors/LfpDisplayNode/LfpDisplayEditor.h
index d93f94088db2ffff6af9e760ed2dd30639a36a20..c6fcf331ac2df106b37140c6f9bb2ca34269f3f8 100755
--- a/Source/Processors/Editors/LfpDisplayEditor.h
+++ b/Source/Processors/LfpDisplayNode/LfpDisplayEditor.h
@@ -25,13 +25,13 @@
#define __LFPDISPLAYEDITOR_H_3438800D__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
#include "../../UI/UIComponent.h"
#include "../../UI/DataViewport.h"
#include "../Visualization/DataWindow.h"
-#include "../LfpDisplayNode.h"
-#include "../Visualization/LfpDisplayCanvas.h"
-#include "VisualizerEditor.h"
+#include "LfpDisplayNode.h"
+#include "LfpDisplayCanvas.h"
+#include "../Editors/VisualizerEditor.h"
class Visualizer;
diff --git a/Source/Processors/LfpDisplayNode.cpp b/Source/Processors/LfpDisplayNode/LfpDisplayNode.cpp
similarity index 96%
rename from Source/Processors/LfpDisplayNode.cpp
rename to Source/Processors/LfpDisplayNode/LfpDisplayNode.cpp
index 577e140c05a190a1ebf6b3c965c05e716ff08f7e..bc6b8dd153d91e5791bc86c0cb24c7e274d84533 100755
--- a/Source/Processors/LfpDisplayNode.cpp
+++ b/Source/Processors/LfpDisplayNode/LfpDisplayNode.cpp
@@ -22,7 +22,7 @@
*/
#include "LfpDisplayNode.h"
-#include "Visualization/LfpDisplayCanvas.h"
+#include "LfpDisplayCanvas.h"
#include <stdio.h>
LfpDisplayNode::LfpDisplayNode()
diff --git a/Source/Processors/LfpDisplayNode.h b/Source/Processors/LfpDisplayNode/LfpDisplayNode.h
similarity index 89%
rename from Source/Processors/LfpDisplayNode.h
rename to Source/Processors/LfpDisplayNode/LfpDisplayNode.h
index 0f9d8027af190297ef2e56129646fd82aecb5a76..6a061d44d482980328178747ec256ef5fe79480c 100755
--- a/Source/Processors/LfpDisplayNode.h
+++ b/Source/Processors/LfpDisplayNode/LfpDisplayNode.h
@@ -24,10 +24,10 @@
#ifndef __LFPDISPLAYNODE_H_D969A379__
#define __LFPDISPLAYNODE_H_D969A379__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "Editors/LfpDisplayEditor.h"
-#include "Editors/VisualizerEditor.h"
-#include "GenericProcessor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "LfpDisplayEditor.h"
+#include "../Editors/VisualizerEditor.h"
+#include "../GenericProcessor/GenericProcessor.h"
class DataViewport;
diff --git a/Source/Processors/Visualization/LfpTriggeredAverageCanvas.cpp b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.cpp
similarity index 95%
rename from Source/Processors/Visualization/LfpTriggeredAverageCanvas.cpp
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.cpp
index f27016100e5e0a1f1527a8a4dda0ad968ef3aad9..413a7b7412c6a00721be2304366b3e4f4529b63b 100755
--- a/Source/Processors/Visualization/LfpTriggeredAverageCanvas.cpp
+++ b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.cpp
@@ -86,20 +86,20 @@ LfpTriggeredAverageCanvas::LfpTriggeredAverageCanvas(LfpTriggeredAverageNode* pr
rangeSelection = new ComboBox("Voltage range");
rangeSelection->addItemList(voltageRanges, 1);
- rangeSelection->setSelectedId(4,false);
+ rangeSelection->setSelectedId(4, dontSendNotification);
rangeSelection->addListener(this);
addAndMakeVisible(rangeSelection);
timebaseSelection = new ComboBox("Timebase");
timebaseSelection->addItemList(timebases, 1);
- timebaseSelection->setSelectedId(3,false);
+ timebaseSelection->setSelectedId(3, dontSendNotification);
timebaseSelection->addListener(this);
addAndMakeVisible(timebaseSelection);
spreadSelection = new ComboBox("Spread");
spreadSelection->addItemList(spreads, 1);
- spreadSelection->setSelectedId(5,false);
+ spreadSelection->setSelectedId(5, dontSendNotification);
spreadSelection->addListener(this);
addAndMakeVisible(spreadSelection);
@@ -332,13 +332,13 @@ void LfpTriggeredAverageCanvas::updateScreenBuffer()
screenBuffer->addFrom(channel, // destChannel
screenBufferIndex, // destStartSample
- displayBuffer->getSampleData(channel, displayBufferIndex), // source
+ displayBuffer->getWritePointer(channel, displayBufferIndex), // source
1, // numSamples
invAlpha*gain); // gain
screenBuffer->addFrom(channel, // destChannel
screenBufferIndex, // destStartSample
- displayBuffer->getSampleData(channel, nextPos), // source
+ displayBuffer->getWritePointer(channel, nextPos), // source
1, // numSamples
alpha*gain); // gain
@@ -380,7 +380,7 @@ int LfpTriggeredAverageCanvas::getNumChannels()
float LfpTriggeredAverageCanvas::getYCoord(int chan, int samp)
{
- return *screenBuffer->getSampleData(chan, samp);
+ return *screenBuffer->getReadPointer(chan, samp);
}
void LfpTriggeredAverageCanvas::paint(Graphics& g)
diff --git a/Source/Processors/Visualization/LfpTriggeredAverageCanvas.h b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.h
similarity index 94%
rename from Source/Processors/Visualization/LfpTriggeredAverageCanvas.h
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.h
index d4bfaee4b79da39fa2e51c28a29bd8f01a8d5dc6..94ba2623c88c4c71ebf70585f6c3b8020fe1edc2 100755
--- a/Source/Processors/Visualization/LfpTriggeredAverageCanvas.h
+++ b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.h
@@ -24,8 +24,8 @@
#define __LfpTriggeredAverageCAVCAS_H_B711873A__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../LfpTriggeredAverageNode.h"
-#include "Visualizer.h"
+#include "LfpTriggeredAverageNode.h"
+#include "../Visualization/Visualizer.h"
class LfpTriggeredAverageNode;
diff --git a/Source/Processors/Editors/LfpTriggeredAverageEditor.cpp b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.cpp
similarity index 100%
rename from Source/Processors/Editors/LfpTriggeredAverageEditor.cpp
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.cpp
diff --git a/Source/Processors/Editors/LfpTriggeredAverageEditor.h b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.h
similarity index 88%
rename from Source/Processors/Editors/LfpTriggeredAverageEditor.h
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.h
index 34e0e043425ebacad39ff6e3f3c7d6c00466190a..8c2de426ecbb27bd84d6a129eea8ea0f185f29c3 100644
--- a/Source/Processors/Editors/LfpTriggeredAverageEditor.h
+++ b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.h
@@ -25,13 +25,13 @@
#define __LfpTriggeredAverageEDITOR_H_3438800D__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
#include "../../UI/UIComponent.h"
#include "../../UI/DataViewport.h"
#include "../Visualization/DataWindow.h"
-#include "../LfpTriggeredAverageNode.h"
-#include "../Visualization/LfpTriggeredAverageCanvas.h"
-#include "VisualizerEditor.h"
+#include "LfpTriggeredAverageNode.h"
+#include "LfpTriggeredAverageCanvas.h"
+#include "../Editors/VisualizerEditor.h"
class Visualizer;
diff --git a/Source/Processors/LfpTriggeredAverageNode.cpp b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.cpp
similarity index 96%
rename from Source/Processors/LfpTriggeredAverageNode.cpp
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.cpp
index 8de7d71c33022a5196e678d56c59f88c019350b2..8e9773c270c8a59f93b835915fba22f70115ffd0 100755
--- a/Source/Processors/LfpTriggeredAverageNode.cpp
+++ b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.cpp
@@ -22,7 +22,7 @@
*/
#include "LfpTriggeredAverageNode.h"
-#include "Visualization/LfpTriggeredAverageCanvas.h"
+#include "LfpTriggeredAverageCanvas.h"
#include <stdio.h>
LfpTriggeredAverageNode::LfpTriggeredAverageNode()
diff --git a/Source/Processors/LfpTriggeredAverageNode.h b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.h
similarity index 89%
rename from Source/Processors/LfpTriggeredAverageNode.h
rename to Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.h
index b5ee62b66fa41841a487487fd5114aadef36bba9..413a1732323a19eb5933ad34c0cc1a17e83fa6cb 100755
--- a/Source/Processors/LfpTriggeredAverageNode.h
+++ b/Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.h
@@ -24,10 +24,10 @@
#ifndef __LFPTRIGAVGNODE_H_D969A379__
#define __LFPTRIGAVGNODE_H_D969A379__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "Editors/LfpTriggeredAverageEditor.h"
-#include "Editors/VisualizerEditor.h"
-#include "GenericProcessor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "LfpTriggeredAverageEditor.h"
+#include "../Editors/VisualizerEditor.h"
+#include "../GenericProcessor/GenericProcessor.h"
class DataViewport;
diff --git a/Source/Processors/Utilities/Merger.cpp b/Source/Processors/Merger/Merger.cpp
similarity index 94%
rename from Source/Processors/Utilities/Merger.cpp
rename to Source/Processors/Merger/Merger.cpp
index fa88ecc55ad88a503fdbcfabd699109389193783..40ec6bc5439f0515bde717b2c5fdfcf073c02002 100755
--- a/Source/Processors/Utilities/Merger.cpp
+++ b/Source/Processors/Merger/Merger.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,11 +22,11 @@
*/
#include "Merger.h"
-#include "../Editors/MergerEditor.h"
+#include "MergerEditor.h"
#include "../../UI/EditorViewport.h"
-#include "../Channel.h"
+#include "../Channel/Channel.h"
Merger::Merger()
: GenericProcessor("Merger"),
diff --git a/Source/Processors/Utilities/Merger.h b/Source/Processors/Merger/Merger.h
similarity index 92%
rename from Source/Processors/Utilities/Merger.h
rename to Source/Processors/Merger/Merger.h
index 820684c1eed01f3e7aed0d4101e91871b7d3d25e..90699a154da90ffb9e21f928939ba030a346e7a8 100755
--- a/Source/Processors/Utilities/Merger.h
+++ b/Source/Processors/Merger/Merger.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#define __MERGER_H_ED548E77__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/MergerEditor.cpp b/Source/Processors/Merger/MergerEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/MergerEditor.cpp
rename to Source/Processors/Merger/MergerEditor.cpp
index 72d37a07fd8c3ca1ea24f4b5a52c158d647208c5..28cd7835464050faf7994f6560bdc3d669406ab0 100755
--- a/Source/Processors/Editors/MergerEditor.cpp
+++ b/Source/Processors/Merger/MergerEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,8 +22,8 @@
*/
#include "MergerEditor.h"
-#include "../Utilities/Merger.h"
-#include "../ProcessorGraph.h"
+#include "Merger.h"
+#include "../ProcessorGraph/ProcessorGraph.h"
#include "../../UI/EditorViewport.h"
// PipelineSelectorButton::PipelineSelectorButton()
diff --git a/Source/Processors/Editors/MergerEditor.h b/Source/Processors/Merger/MergerEditor.h
similarity index 92%
rename from Source/Processors/Editors/MergerEditor.h
rename to Source/Processors/Merger/MergerEditor.h
index a9b6b7b3d95192974bac4bf43109be23b2b0523c..b312197abe8032d29b844591b33b0b224f980cd0 100755
--- a/Source/Processors/Editors/MergerEditor.h
+++ b/Source/Processors/Merger/MergerEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,7 +26,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
diff --git a/Source/Processors/MessageCenter/MessageCenter.cpp b/Source/Processors/MessageCenter/MessageCenter.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..e07812744df37e0146153048db9617614c5649a8
--- /dev/null
+++ b/Source/Processors/MessageCenter/MessageCenter.cpp
@@ -0,0 +1,91 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "MessageCenter.h"
+#include "MessageCenterEditor.h"
+
+//---------------------------------------------------------------------
+
+MessageCenter::MessageCenter() :
+ GenericProcessor("Message Center"), newEventAvailable(false), isRecording(false)
+{
+
+ setPlayConfigDetails(0, // number of inputs
+ 0, // number of outputs
+ 44100.0, // sampleRate
+ 128); // blockSize
+
+}
+
+MessageCenter::~MessageCenter()
+{
+
+}
+
+AudioProcessorEditor* MessageCenter::createEditor()
+{
+
+ messageCenterEditor = new MessageCenterEditor(this);
+
+ return messageCenterEditor;
+
+}
+
+void MessageCenter::setParameter(int parameterIndex, float newValue)
+{
+ if (isRecording)
+ {
+ newEventAvailable = true;
+ messageCenterEditor->messageReceived(true);
+ }
+ else
+ {
+ messageCenterEditor->messageReceived(false);
+ }
+
+}
+
+void MessageCenter::process(AudioSampleBuffer& buffer, MidiBuffer& eventBuffer, int& nSamples)
+{
+
+ if (newEventAvailable)
+ {
+ int numBytes = 0;
+
+ String eventString = messageCenterEditor->getLabelString();
+
+ CharPointer_UTF8 data = eventString.toUTF8();
+
+ addEvent(eventBuffer,
+ MESSAGE,
+ 0,
+ 0,
+ 0,
+ data.length()+1, //It doesn't hurt to send the end-string null and can help avoid issues
+ (uint8*) data.getAddress());
+
+ newEventAvailable = false;
+ }
+
+
+}
diff --git a/Source/UI/MessageCenter.h b/Source/Processors/MessageCenter/MessageCenter.h
old mode 100755
new mode 100644
similarity index 54%
rename from Source/UI/MessageCenter.h
rename to Source/Processors/MessageCenter/MessageCenter.h
index e47d4d2d2cb5a16350ff22b068a01d4e01f2fb95..ec4218ce6ef12ddf33c8520d076197b1c06b47ac
--- a/Source/UI/MessageCenter.h
+++ b/Source/Processors/MessageCenter/MessageCenter.h
@@ -2,7 +2,7 @@
-----------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,12 @@
#define __MESSAGECENTER_H_2695FC38__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include <stdio.h>
+
+#include "../GenericProcessor/GenericProcessor.h"
+
+class MessageCenterEditor;
/**
@@ -37,30 +42,35 @@
*/
-class MessageCenter : public Component,
- public ActionListener
+class MessageCenter : public GenericProcessor
{
public:
MessageCenter();
~MessageCenter();
- /** Draws the message center.*/
- void paint(Graphics& g);
+ /** Handle incoming data and decide which files and events to write to disk. */
+ void process(AudioSampleBuffer& buffer, MidiBuffer& eventBuffer, int& nSamples);
-private:
+ /** Called when new events arrive. */
+ void setParameter(int parameterIndex, float newValue);
+
+ /** Creates the MessageCenterEditor (located in the UI component). */
+ AudioProcessorEditor* createEditor();
- /** A JUCE label used to display message text. */
- ScopedPointer<Label> messageDisplayArea;
+ /** A pointer to the Message Center editor. */
+ ScopedPointer<MessageCenterEditor> messageCenterEditor;
+
+ void startRecording() {isRecording = true;}
+ void stopRecording() {isRecording = false;}
+
+private:
- /** Called when the boundaries of the MessageCenter are changed. */
- void resized();
+ bool newEventAvailable;
- /** Called when a new message is received. */
- void actionListenerCallback(const String& message);
+ bool isRecording;
- /** The background color (changes to yellow when a new message arrives). */
- Colour messageBackground;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(MessageCenter);
};
diff --git a/Source/Processors/MessageCenter/MessageCenterEditor.cpp b/Source/Processors/MessageCenter/MessageCenterEditor.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..ab457e9906e0b7919189bf3ff7498e3f3bc6ca0d
--- /dev/null
+++ b/Source/Processors/MessageCenter/MessageCenterEditor.cpp
@@ -0,0 +1,177 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "MessageCenterEditor.h"
+
+MessageCenterEditor::MessageCenterEditor(MessageCenter* owner) :
+ AudioProcessorEditor(owner),
+ messageCenter(owner),
+ incomingBackground(100, 100, 100),
+ outgoingBackground(100, 100, 100)
+{
+
+ incomingMessageDisplayArea = new Label("Message Display Area","No new messages.");
+ outgoingMessageDisplayArea = new Label("Message Display Area","Type a new message here.");
+ outgoingMessageDisplayArea->setEditable(true);
+
+ addAndMakeVisible(incomingMessageDisplayArea);
+ addAndMakeVisible(outgoingMessageDisplayArea);
+
+ sendMessageButton = new UtilityButton("Save", Font("Small Text", 0, Font::plain));
+ sendMessageButton->addListener(this);
+ sendMessageButton->setTooltip("Send a message to be saved by the record node");
+ addAndMakeVisible(sendMessageButton);
+
+}
+
+MessageCenterEditor::~MessageCenterEditor()
+{
+
+}
+
+
+void MessageCenterEditor::buttonClicked(Button* button)
+{
+ messageCenter->setParameter(1,1);
+
+}
+
+void MessageCenterEditor::labelTextChanged(Label* label)
+{
+
+}
+
+void MessageCenterEditor::timerCallback()
+{
+
+ bool shouldRepaint = false;
+
+ float incomingAlpha = incomingBackground.getFloatAlpha();
+
+ if (incomingAlpha > 0)
+ {
+ incomingAlpha -= 0.05;
+
+ if (incomingAlpha < 0)
+ incomingAlpha = 0;
+
+ incomingBackground = incomingBackground.withAlpha(incomingAlpha);
+
+ shouldRepaint = true;
+ }
+
+ if (shouldRepaint)
+ repaint();
+ else
+ stopTimer();
+
+}
+
+bool MessageCenterEditor::keyPressed(const KeyPress& key)
+{
+ return false;
+}
+
+String MessageCenterEditor::getLabelString()
+{
+ return outgoingMessageDisplayArea->getText();
+}
+
+
+void MessageCenterEditor::enable()
+{
+ //sendMessageButton->setVisible(true);
+}
+
+void MessageCenterEditor::disable()
+{
+ //sendMessageButton->setVisible(false);
+}
+
+void MessageCenterEditor::messageReceived(bool state)
+{
+ if (!state)
+ {
+ incomingMessageDisplayArea->setText("Cannot save messages when recording is not active.", sendNotification);
+ incomingBackground = Colours::red;
+ } else {
+ incomingMessageDisplayArea->setText("Message sent.", sendNotification);
+ incomingBackground = Colours::green;
+ }
+
+ startTimer(75);
+}
+
+void MessageCenterEditor::paint(Graphics& g)
+{
+
+ g.setColour(Colour(58,58,58));
+
+ g.fillRect(0, 0, getWidth(), getHeight());
+
+ g.setColour(Colour(100,100,100));
+
+ g.fillRect(5, 5, getWidth()/2-5, getHeight()-10);
+ g.fillRect(getWidth()/2+5, 5, getWidth()/2-60, getHeight()-10);
+
+ g.setColour(incomingBackground);
+
+ g.fillRect(5, 5, getWidth()/2-5, getHeight()-10);
+
+ g.setColour(outgoingBackground);
+
+ g.fillRect(getWidth()/2+5, 5, getWidth()/2-60, getHeight()-10);
+
+}
+
+void MessageCenterEditor::resized()
+{
+ if (incomingMessageDisplayArea != 0)
+ incomingMessageDisplayArea->setBounds(5,0,getWidth()/2-5,getHeight());
+
+ if (outgoingMessageDisplayArea != 0)
+ outgoingMessageDisplayArea->setBounds(getWidth()/2+5,0,getWidth()/2-60, getHeight());
+
+ if (sendMessageButton != 0)
+ sendMessageButton->setBounds(getWidth()-50, 5, 45, getHeight()-10);
+}
+
+void MessageCenterEditor::actionListenerCallback(const String& message)
+{
+
+ incomingMessageDisplayArea->setText(message, sendNotification);
+
+ incomingBackground = Colours::orange;
+ startTimer(75);
+
+}
+
+void MessageCenterEditor::saveStateToXml(XmlElement* xml)
+{
+
+}
+
+void MessageCenterEditor::loadStateFromXml(XmlElement* xml)
+{
+
+}
diff --git a/Source/Processors/MessageCenter/MessageCenterEditor.h b/Source/Processors/MessageCenter/MessageCenterEditor.h
new file mode 100644
index 0000000000000000000000000000000000000000..81df70a72fedf4335398efbfb9df21ff35b75ace
--- /dev/null
+++ b/Source/Processors/MessageCenter/MessageCenterEditor.h
@@ -0,0 +1,97 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#ifndef MESSAGECENTEREDITOR_H_INCLUDED
+#define MESSAGECENTEREDITOR_H_INCLUDED
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "MessageCenter.h"
+#include <stdio.h>
+
+/**
+ Holds the interface for adding events to the message queue
+
+ @see MessageCenter
+
+*/
+
+class MessageCenterEditor : public AudioProcessorEditor,
+ public Button::Listener,
+ public Label::Listener,
+ public AccessClass,
+ public Timer,
+ public ActionListener
+
+{
+public:
+ MessageCenterEditor(MessageCenter* owner);
+ ~MessageCenterEditor();
+
+ void paint(Graphics& g);
+
+ bool keyPressed(const KeyPress& key);
+
+ void resized();
+
+ void enable();
+ void disable();
+
+ void messageReceived(bool state);
+
+ void saveStateToXml(XmlElement* xml);
+ void loadStateFromXml(XmlElement* xml);
+
+ String getLabelString();
+
+private:
+
+ void buttonClicked(Button* button);
+ void labelTextChanged(Label* slider);
+ void timerCallback();
+
+ bool isEnabled;
+
+ /** Called when a new message is received. */
+ void actionListenerCallback(const String& message);
+
+ /** A JUCE label used to display message text. */
+ ScopedPointer<Label> incomingMessageDisplayArea;
+
+ /** A JUCE label used to display message text. */
+ ScopedPointer<Label> outgoingMessageDisplayArea;
+
+ /** A JUCE button used to send messages. */
+ ScopedPointer<Button> sendMessageButton;
+
+ MessageCenter* messageCenter;
+
+ Colour incomingBackground;
+ Colour outgoingBackground;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(MessageCenterEditor);
+
+};
+
+
+
+#endif // MESSAGECENTEREDITOR_H_INCLUDED
diff --git a/Source/Processors/Parameter.cpp b/Source/Processors/Parameter/Parameter.cpp
similarity index 94%
rename from Source/Processors/Parameter.cpp
rename to Source/Processors/Parameter/Parameter.cpp
index da0dc4444967296ccc077f52d700c9e914ba7d77..1fcd924ed5fb01726fc54a42ab59cd3dcc22117e 100755
--- a/Source/Processors/Parameter.cpp
+++ b/Source/Processors/Parameter/Parameter.cpp
@@ -2,7 +2,7 @@
/* ------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Parameter.h b/Source/Processors/Parameter/Parameter.h
similarity index 98%
rename from Source/Processors/Parameter.h
rename to Source/Processors/Parameter/Parameter.h
index 92ee5e7a588b2bfe900b06f5b90ee3ffb075d4ec..33cf68b40269bda6f2adb23f5a8bd914a209a95e 100755
--- a/Source/Processors/Parameter.h
+++ b/Source/Processors/Parameter/Parameter.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,7 +24,7 @@
#ifndef __PARAMETER_H_62922AE5__
#define __PARAMETER_H_62922AE5__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
// #include "Editors/GenericEditor.h"
// #include "GenericProcessor.h"
// #include "../AccessClass.h"
diff --git a/Source/Processors/Editors/ParameterEditor.cpp b/Source/Processors/Parameter/ParameterEditor.cpp
similarity index 96%
rename from Source/Processors/Editors/ParameterEditor.cpp
rename to Source/Processors/Parameter/ParameterEditor.cpp
index 9c139e065078e8b1c607db7e5423fa8eb730f261..29a03585dfee776aa573ef45e85bb5df2a71d8f7 100755
--- a/Source/Processors/Editors/ParameterEditor.cpp
+++ b/Source/Processors/Parameter/ParameterEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/ParameterEditor.h b/Source/Processors/Parameter/ParameterEditor.h
similarity index 92%
rename from Source/Processors/Editors/ParameterEditor.h
rename to Source/Processors/Parameter/ParameterEditor.h
index bb2fd13589caa3259c9ed30547267babd299cf8c..5f08bd2c99b137389a95f99e5ceecd1ea711ab49 100755
--- a/Source/Processors/Editors/ParameterEditor.h
+++ b/Source/Processors/Parameter/ParameterEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,9 +25,9 @@
#define __PARAMETEREDITOR_H_44537DA9__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../GenericProcessor.h"
-#include "ChannelSelector.h"
-#include "../Parameter.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "../Editors/ChannelSelector.h"
+#include "Parameter.h"
#include <stdio.h>
class ParameterButton;
diff --git a/Source/Processors/PhaseDetector.cpp b/Source/Processors/PhaseDetector/PhaseDetector.cpp
similarity index 95%
rename from Source/Processors/PhaseDetector.cpp
rename to Source/Processors/PhaseDetector/PhaseDetector.cpp
index 0a6d07df0749c013b21b62073549df5b47a5bb2d..069b76454b3786709a8fc7b15cc3101eba0f510b 100644
--- a/Source/Processors/PhaseDetector.cpp
+++ b/Source/Processors/PhaseDetector/PhaseDetector.cpp
@@ -23,7 +23,7 @@
#include <stdio.h>
#include "PhaseDetector.h"
-#include "Editors/PhaseDetectorEditor.h"
+#include "PhaseDetectorEditor.h"
PhaseDetector::PhaseDetector()
: GenericProcessor("Phase Detector"), activeModule(-1),
diff --git a/Source/Processors/PhaseDetector.h b/Source/Processors/PhaseDetector/PhaseDetector.h
similarity index 91%
rename from Source/Processors/PhaseDetector.h
rename to Source/Processors/PhaseDetector/PhaseDetector.h
index 21dddad125b7ddb3d83b7c6c29affeae39f545b0..6116e2f2fe6ef0de397f5ba3233a99659d7b5a28 100644
--- a/Source/Processors/PhaseDetector.h
+++ b/Source/Processors/PhaseDetector/PhaseDetector.h
@@ -25,8 +25,8 @@
#define __PHASEDETECTOR_H_F411F29D__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
#define NUM_INTERVALS 5
diff --git a/Source/Processors/Editors/PhaseDetectorEditor.cpp b/Source/Processors/PhaseDetector/PhaseDetectorEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/PhaseDetectorEditor.cpp
rename to Source/Processors/PhaseDetector/PhaseDetectorEditor.cpp
index 2e26307e7a5916d5def2779c32e6ffc5f880523f..5551157a617633f121a39d179c0fd60305a59907 100644
--- a/Source/Processors/Editors/PhaseDetectorEditor.cpp
+++ b/Source/Processors/PhaseDetector/PhaseDetectorEditor.cpp
@@ -23,7 +23,7 @@
#include "PhaseDetectorEditor.h"
-#include "../PhaseDetector.h"
+#include "PhaseDetector.h"
#include <stdio.h>
#include <cmath>
diff --git a/Source/Processors/Editors/PhaseDetectorEditor.h b/Source/Processors/PhaseDetector/PhaseDetectorEditor.h
similarity index 93%
rename from Source/Processors/Editors/PhaseDetectorEditor.h
rename to Source/Processors/PhaseDetector/PhaseDetectorEditor.h
index f7bafda19202ff40aae12557a9fd0ac74d48007c..0041d45129cfad99fe6a1afbea58b1cdee409bd4 100644
--- a/Source/Processors/Editors/PhaseDetectorEditor.h
+++ b/Source/Processors/PhaseDetector/PhaseDetectorEditor.h
@@ -27,8 +27,8 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ElectrodeButtons.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ElectrodeButtons.h"
class DetectorInterface;
class PhaseDetector;
diff --git a/Source/Processors/ProcessorGraph.cpp b/Source/Processors/ProcessorGraph/ProcessorGraph.cpp
similarity index 85%
rename from Source/Processors/ProcessorGraph.cpp
rename to Source/Processors/ProcessorGraph/ProcessorGraph.cpp
index bbec3de2ded58083b6de175517dff05a16dfa672..b12e4cbb2fbe4a56d1f21e2e285e2b4b458c22cd 100644
--- a/Source/Processors/ProcessorGraph.cpp
+++ b/Source/Processors/ProcessorGraph/ProcessorGraph.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,34 +24,36 @@
#include <stdio.h>
#include "ProcessorGraph.h"
-
-#include "AudioNode.h"
-#include "LfpDisplayNode.h"
-#include "SpikeDisplayNode.h"
-#include "EventNode.h"
-#include "FilterNode.h"
-#include "GenericProcessor.h"
-#include "RecordNode.h"
-#include "ResamplingNode.h"
-#include "ReferenceNode.h"
-#include "ChannelMappingNode.h"
-#include "AudioResamplingNode.h"
-#include "SignalGenerator.h"
-#include "SourceNode.h"
-#include "EventDetector.h"
-#include "SpikeDetector.h"
-#include "PhaseDetector.h"
-#include "WiFiOutput.h"
-#include "FileReader.h"
-#include "ArduinoOutput.h"
-#include "FPGAOutput.h"
-#include "PulsePalOutput.h"
-#include "SerialInput.h"
-#include "Utilities/RecordControl.h"
-#include "Utilities/Splitter.h"
-#include "Utilities/Merger.h"
-#include "../UI/UIComponent.h"
-#include "../UI/EditorViewport.h"
+#include "../GenericProcessor/GenericProcessor.h"
+
+#include "../AudioNode/AudioNode.h"
+#include "../LfpDisplayNode/LfpDisplayNode.h"
+#include "../SpikeDisplayNode/SpikeDisplayNode.h"
+#include "../EventNode/EventNode.h"
+#include "../FilterNode/FilterNode.h"
+#include "../RecordNode/RecordNode.h"
+#include "../ResamplingNode/ResamplingNode.h"
+#include "../ReferenceNode/ReferenceNode.h"
+#include "../ChannelMappingNode/ChannelMappingNode.h"
+#include "../AudioResamplingNode/AudioResamplingNode.h"
+#include "../SignalGenerator/SignalGenerator.h"
+#include "../SourceNode/SourceNode.h"
+#include "../EventDetector/EventDetector.h"
+#include "../SpikeDetector/SpikeDetector.h"
+#include "../SpikeSorter/SpikeSorter.h"
+#include "../PhaseDetector/PhaseDetector.h"
+#include "../WiFiOutput/WiFiOutput.h"
+#include "../FileReader/FileReader.h"
+#include "../ArduinoOutput/ArduinoOutput.h"
+#include "../FPGAOutput/FPGAOutput.h"
+#include "../PulsePalOutput/PulsePalOutput.h"
+#include "../SerialInput/SerialInput.h"
+#include "../MessageCenter/MessageCenter.h"
+#include "../RecordControl/RecordControl.h"
+#include "../Splitter/Splitter.h"
+#include "../Merger/Merger.h"
+#include "../../UI/UIComponent.h"
+#include "../../UI/EditorViewport.h"
ProcessorGraph::ProcessorGraph() : currentNodeId(100)
{
@@ -63,8 +65,6 @@ ProcessorGraph::ProcessorGraph() : currentNodeId(100)
44100.0, // sampleRate
1024); // blockSize
- createDefaultNodes();
-
}
ProcessorGraph::~ProcessorGraph()
@@ -88,15 +88,19 @@ void ProcessorGraph::createDefaultNodes()
AudioNode* an = new AudioNode();
an->setNodeId(AUDIO_NODE_ID);
-
// add audio resampling node -- resamples continuous signals to 44.1kHz
AudioResamplingNode* arn = new AudioResamplingNode();
arn->setNodeId(RESAMPLING_NODE_ID);
+ // add message center
+ MessageCenter* msgCenter = new MessageCenter();
+ msgCenter->setNodeId(MESSAGE_CENTER_ID);
+
addNode(on, OUTPUT_NODE_ID);
addNode(recn, RECORD_NODE_ID);
addNode(an, AUDIO_NODE_ID);
addNode(arn, RESAMPLING_NODE_ID);
+ addNode(msgCenter, MESSAGE_CENTER_ID);
}
@@ -105,13 +109,22 @@ void ProcessorGraph::updatePointers()
getAudioNode()->setUIComponent(getUIComponent());
getAudioNode()->updateBufferSize();
getRecordNode()->setUIComponent(getUIComponent());
+ getMessageCenter()->setUIComponent(getUIComponent());
}
void* ProcessorGraph::createNewProcessor(String& description, int id)//,
{
- GenericProcessor* processor = createProcessorFromDescription(description);
+ GenericProcessor* processor = 0;
+ try // Try/catch block added by Michael Borisov
+ {
+ processor = createProcessorFromDescription(description);
+ }
+ catch (std::exception& e)
+ {
+ NativeMessageBox::showMessageBoxAsync(AlertWindow::WarningIcon, "OpenEphys", e.what());
+ }
// int id = currentNodeId++;
@@ -175,7 +188,8 @@ void ProcessorGraph::refreshColors()
if (nodeId != OUTPUT_NODE_ID &&
nodeId != AUDIO_NODE_ID &&
nodeId != RECORD_NODE_ID &&
- nodeId != RESAMPLING_NODE_ID)
+ nodeId != RESAMPLING_NODE_ID &&
+ nodeId != MESSAGE_CENTER_ID)
{
GenericProcessor* p =(GenericProcessor*) node->getProcessor();
GenericEditor* e = (GenericEditor*) p->getEditor();
@@ -198,7 +212,8 @@ void ProcessorGraph::restoreParameters()
if (nodeId != OUTPUT_NODE_ID &&
nodeId != AUDIO_NODE_ID &&
nodeId != RECORD_NODE_ID &&
- nodeId != RESAMPLING_NODE_ID)
+ nodeId != RESAMPLING_NODE_ID &&
+ nodeId != MESSAGE_CENTER_ID)
{
GenericProcessor* p =(GenericProcessor*) node->getProcessor();
p->loadFromXml();
@@ -221,7 +236,8 @@ Array<GenericProcessor*> ProcessorGraph::getListOfProcessors()
if (nodeId != OUTPUT_NODE_ID &&
nodeId != AUDIO_NODE_ID &&
nodeId != RECORD_NODE_ID &&
- nodeId != RESAMPLING_NODE_ID)
+ nodeId != RESAMPLING_NODE_ID &&
+ nodeId != MESSAGE_CENTER_ID)
{
GenericProcessor* p =(GenericProcessor*) node->getProcessor();
a.add(p);
@@ -269,6 +285,9 @@ void ProcessorGraph::clearConnections()
addConnection(AUDIO_NODE_ID, midiChannelIndex,
RESAMPLING_NODE_ID, midiChannelIndex);
+
+ addConnection(MESSAGE_CENTER_ID, midiChannelIndex,
+ RECORD_NODE_ID, midiChannelIndex);
}
@@ -435,6 +454,7 @@ void ProcessorGraph::connectProcessorToAudioAndRecordNodes(GenericProcessor* sou
if (source == nullptr)
return;
+ getRecordNode()->registerProcessor(source);
for (int chan = 0; chan < source->getNumOutputs(); chan++)
{
@@ -491,6 +511,7 @@ GenericProcessor* ProcessorGraph::createProcessorFromDescription(String& descrip
if (subProcessorType.equalsIgnoreCase("RHA2000-EVAL") ||
// subProcessorType.equalsIgnoreCase("File Reader") ||
subProcessorType.equalsIgnoreCase("Custom FPGA") ||
+ subProcessorType.equalsIgnoreCase("eCube") || // Added by Michael Borisov
subProcessorType.equalsIgnoreCase("Rhythm FPGA"))
{
@@ -547,6 +568,11 @@ GenericProcessor* ProcessorGraph::createProcessorFromDescription(String& descrip
std::cout << "Creating a new spike detector." << std::endl;
processor = new SpikeDetector();
}
+ else if (subProcessorType.equalsIgnoreCase("Spike Sorter"))
+ {
+ std::cout << "Creating a new spike sorter." << std::endl;
+ processor = new SpikeSorter();
+ }
else if (subProcessorType.equalsIgnoreCase("Event Detector"))
{
std::cout << "Creating a new event detector." << std::endl;
@@ -662,6 +688,7 @@ void ProcessorGraph::removeProcessor(GenericProcessor* processor)
std::cout << "Removing processor with ID " << processor->getNodeId() << std::endl;
+ disconnectNode(processor->getNodeId());
removeNode(processor->getNodeId());
}
@@ -732,7 +759,7 @@ bool ProcessorGraph::disableProcessors()
for (int i = 0; i < getNumNodes(); i++)
{
Node* node = getNode(i);
- if (node->nodeId != OUTPUT_NODE_ID)
+ if (node->nodeId != OUTPUT_NODE_ID && node->nodeId != MESSAGE_CENTER_ID)
{
GenericProcessor* p = (GenericProcessor*) node->getProcessor();
std::cout << "Disabling " << p->getName() << std::endl;
@@ -774,11 +801,7 @@ void ProcessorGraph::setRecordState(bool isRecording)
{
GenericProcessor* p = (GenericProcessor*) node->getProcessor();
- if (isRecording)
- p->startRecording();
- else
- p->stopRecording();
-
+ p->setRecording(isRecording);
}
}
@@ -802,3 +825,12 @@ RecordNode* ProcessorGraph::getRecordNode()
return (RecordNode*) node->getProcessor();
}
+
+
+MessageCenter* ProcessorGraph::getMessageCenter()
+{
+
+ Node* node = getNodeForId(MESSAGE_CENTER_ID);
+ return (MessageCenter*) node->getProcessor();
+
+}
diff --git a/Source/Processors/ProcessorGraph.h b/Source/Processors/ProcessorGraph/ProcessorGraph.h
similarity index 89%
rename from Source/Processors/ProcessorGraph.h
rename to Source/Processors/ProcessorGraph/ProcessorGraph.h
index 48919679b6b86a3644f6d5b55a66709aa110b764..2edbf0180db47e4d17f8f33022adfbbcfe75e5b3 100644
--- a/Source/Processors/ProcessorGraph.h
+++ b/Source/Processors/ProcessorGraph/ProcessorGraph.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,13 +24,14 @@
#ifndef __PROCESSORGRAPH_H_124F8B50__
#define __PROCESSORGRAPH_H_124F8B50__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../AccessClass.h"
+#include "../../AccessClass.h"
class GenericProcessor;
class RecordNode;
class AudioNode;
+class MessageCenter;
class SignalChainTabButton;
/**
@@ -69,6 +70,7 @@ public:
RecordNode* getRecordNode();
AudioNode* getAudioNode();
+ MessageCenter* getMessageCenter();
void updateConnections(Array<SignalChainTabButton*, CriticalSection>);
@@ -85,6 +87,8 @@ public:
void refreshColors();
+ void createDefaultNodes();
+
private:
int currentNodeId;
@@ -94,11 +98,10 @@ private:
RECORD_NODE_ID = 900,
AUDIO_NODE_ID = 901,
OUTPUT_NODE_ID = 902,
- RESAMPLING_NODE_ID = 903
+ RESAMPLING_NODE_ID = 903,
+ MESSAGE_CENTER_ID = 904
};
- void createDefaultNodes();
-
void clearConnections();
void connectProcessors(GenericProcessor* source, GenericProcessor* dest);
diff --git a/Source/Processors/PulsePalOutput.cpp b/Source/Processors/PulsePalOutput/PulsePalOutput.cpp
similarity index 95%
rename from Source/Processors/PulsePalOutput.cpp
rename to Source/Processors/PulsePalOutput/PulsePalOutput.cpp
index 6cbfe51dc0598fee333d129c85c3ad9aed390b33..addb53f28b75ca92a542b4d319593c9a3c49cfe1 100644
--- a/Source/Processors/PulsePalOutput.cpp
+++ b/Source/Processors/PulsePalOutput/PulsePalOutput.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/PulsePalOutput.h b/Source/Processors/PulsePalOutput/PulsePalOutput.h
similarity index 86%
rename from Source/Processors/PulsePalOutput.h
rename to Source/Processors/PulsePalOutput/PulsePalOutput.h
index 85f192ccaf9b2b36bf88128b1cc6f335f9218131..e9f52a13b60178757136c5568e2db767424af58a 100644
--- a/Source/Processors/PulsePalOutput.h
+++ b/Source/Processors/PulsePalOutput/PulsePalOutput.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,10 +24,10 @@
#ifndef __PULSEPALOUTPUT_H_A8BF66D6__
#define __PULSEPALOUTPUT_H_A8BF66D6__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/PulsePalOutputEditor.h"
-#include "Serial/PulsePal.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "PulsePalOutputEditor.h"
+#include "../Serial/PulsePal.h"
/**
diff --git a/Source/Processors/Editors/PulsePalOutputEditor.cpp b/Source/Processors/PulsePalOutput/PulsePalOutputEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/PulsePalOutputEditor.cpp
rename to Source/Processors/PulsePalOutput/PulsePalOutputEditor.cpp
index 443d5a8aec31525ea3d8ded3f67241fc37f180b2..f4f6648f38cb3c4230dd4da465231147a5fd6821 100644
--- a/Source/Processors/Editors/PulsePalOutputEditor.cpp
+++ b/Source/Processors/PulsePalOutput/PulsePalOutputEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,7 +24,7 @@
#include <stdio.h>
#include "PulsePalOutputEditor.h"
-#include "../PulsePalOutput.h"
+#include "PulsePalOutput.h"
#include "../Serial/PulsePal.h"
PulsePalOutputEditor::PulsePalOutputEditor(GenericProcessor* parentNode, PulsePal* pp, bool useDefaultParameterEditors=true)
diff --git a/Source/Processors/Editors/PulsePalOutputEditor.h b/Source/Processors/PulsePalOutput/PulsePalOutputEditor.h
similarity index 93%
rename from Source/Processors/Editors/PulsePalOutputEditor.h
rename to Source/Processors/PulsePalOutput/PulsePalOutputEditor.h
index a7036704d38740a221c44e3525f753daa8c966ef..9abc2a8903ce06df38733dbeb52cf3da0113260f 100644
--- a/Source/Processors/Editors/PulsePalOutputEditor.h
+++ b/Source/Processors/PulsePalOutput/PulsePalOutputEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#define __PULSEPALOUTPUTEDITOR_H_BB5F0ECC__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
diff --git a/Source/Processors/Utilities/RecordControl.cpp b/Source/Processors/RecordControl/RecordControl.cpp
similarity index 82%
rename from Source/Processors/Utilities/RecordControl.cpp
rename to Source/Processors/RecordControl/RecordControl.cpp
index 8a440fd09f126569ae0ce5d3a63e6181b62129cf..b3ca5b019e3f32dc6a7252f140ed5f01a241a1ba 100644
--- a/Source/Processors/Utilities/RecordControl.cpp
+++ b/Source/Processors/RecordControl/RecordControl.cpp
@@ -28,7 +28,7 @@
RecordControl::RecordControl()
: GenericProcessor("Record Control"),
- createNewFilesOnTrigger(false), triggerChannel(0), recordNode(0)
+ triggerChannel(0), recordNode(0)
{
}
@@ -50,21 +50,6 @@ void RecordControl::setParameter(int parameterIndex, float newValue)
{
updateTriggerChannel((int) newValue);
}
- else
- {
-
- if (newValue == 0.0)
- {
- createNewFilesOnTrigger = false;
-
-
- }
- else
- {
- createNewFilesOnTrigger = true;
- }
- //recordNode->appendTrialNumber(createNewFilesOnTrigger);
- }
}
void RecordControl::updateTriggerChannel(int newChannel)
@@ -77,7 +62,7 @@ bool RecordControl::enable()
if (recordNode == 0)
recordNode = getProcessorGraph()->getRecordNode();
- recordNode->appendTrialNumber(createNewFilesOnTrigger);
+ //recordNode->appendTrialNumber(createNewFilesOnTrigger);
return true;
}
@@ -108,10 +93,6 @@ void RecordControl::handleEvent(int eventType, MidiMessage& event, int)
if (eventId == 1)
{
- if (createNewFilesOnTrigger)
- {
- recordNode->updateTrialNumber();
- }
getControlPanel()->setRecordState(true);
}
else
diff --git a/Source/Processors/Utilities/RecordControl.h b/Source/Processors/RecordControl/RecordControl.h
similarity index 92%
rename from Source/Processors/Utilities/RecordControl.h
rename to Source/Processors/RecordControl/RecordControl.h
index 594c8d04acb2eb421c592da49f0278de3f89d072..ffdfb4239694930dd6027cb8bace79c2216dc156 100644
--- a/Source/Processors/Utilities/RecordControl.h
+++ b/Source/Processors/RecordControl/RecordControl.h
@@ -25,9 +25,9 @@
#define __RECORDCONTROL_H_120DD434__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../GenericProcessor.h"
-#include "../Editors/RecordControlEditor.h"
-#include "../RecordNode.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "RecordControlEditor.h"
+#include "../RecordNode/RecordNode.h"
/**
@@ -49,8 +49,6 @@ public:
void handleEvent(int eventType, MidiMessage& event, int);
bool enable();
- bool createNewFilesOnTrigger;
-
bool isUtility()
{
return true;
diff --git a/Source/Processors/Editors/RecordControlEditor.cpp b/Source/Processors/RecordControl/RecordControlEditor.cpp
similarity index 78%
rename from Source/Processors/Editors/RecordControlEditor.cpp
rename to Source/Processors/RecordControl/RecordControlEditor.cpp
index e97638e92e7ef4e9c97f9d67a6d9c47c78b12584..a8b0f3b3238db8de1db0e0f1579aab904bae7164 100644
--- a/Source/Processors/Editors/RecordControlEditor.cpp
+++ b/Source/Processors/RecordControl/RecordControlEditor.cpp
@@ -22,8 +22,8 @@
*/
#include "RecordControlEditor.h"
-#include "../Utilities/RecordControl.h"
-#include "ChannelSelector.h"
+#include "RecordControl.h"
+#include "../Editors/ChannelSelector.h"
#include <stdio.h>
RecordControlEditor::RecordControlEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors=true)
@@ -58,14 +58,6 @@ RecordControlEditor::RecordControlEditor(GenericProcessor* parentNode, bool useD
channelName += i + 1;
availableChans->addItem(channelName,i+2);
}
-
- newFileToggleButton = new UtilityButton("SPLIT FILES", Font("Small Text", 13, Font::plain));
- newFileToggleButton->setRadius(3.0f);
- newFileToggleButton->setBounds(35, 95, 90, 18);
- newFileToggleButton->addListener(this);
- newFileToggleButton->setClickingTogglesState(true);
- addAndMakeVisible(newFileToggleButton);
-
}
RecordControlEditor::~RecordControlEditor()
@@ -82,18 +74,6 @@ void RecordControlEditor::comboBoxChanged(ComboBox* comboBox)
getProcessor()->setParameter(0, -1);
}
-void RecordControlEditor::buttonEvent(Button* button)
-{
-
- if (button->getToggleState())
- {
- getProcessor()->setParameter(1, 1.0f);
- }
- else
- {
- getProcessor()->setParameter(1, 0.0f);
- }
-}
void RecordControlEditor::updateSettings()
{
@@ -110,7 +90,6 @@ void RecordControlEditor::saveCustomParameters(XmlElement* xml)
info->setAttribute("Type", "RecordControlEditor");
info->setAttribute("Channel",availableChans->getSelectedId());
- info->setAttribute("FileSaveOption",newFileToggleButton->getToggleState());
}
@@ -122,7 +101,6 @@ void RecordControlEditor::loadCustomParameters(XmlElement* xml)
if (xmlNode->hasTagName("PARAMETERS"))
{
- newFileToggleButton->setToggleState(xmlNode->getBoolAttribute("FileSaveOption"), sendNotification);
availableChans->setSelectedId(xmlNode->getIntAttribute("Channel"), sendNotification);
}
diff --git a/Source/Processors/Editors/RecordControlEditor.h b/Source/Processors/RecordControl/RecordControlEditor.h
similarity index 89%
rename from Source/Processors/Editors/RecordControlEditor.h
rename to Source/Processors/RecordControl/RecordControlEditor.h
index 0976ac133237f0e87964658d41e651269175f39c..792c3d5eb566ddf9815a0e5a5900aab48bed0e0e 100644
--- a/Source/Processors/Editors/RecordControlEditor.h
+++ b/Source/Processors/RecordControl/RecordControlEditor.h
@@ -25,7 +25,7 @@
#define __RECORDCONTROLEDITOR_H_F9C69E2B__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
@@ -43,16 +43,14 @@ public:
~RecordControlEditor();
void comboBoxChanged(ComboBox* comboBox);
void updateSettings();
- void buttonEvent(Button* button);
void loadCustomParameters(XmlElement*);
void saveCustomParameters(XmlElement*);
private:
ScopedPointer<ComboBox> availableChans;
ScopedPointer<Label> chanSel;
- ScopedPointer<UtilityButton> newFileToggleButton;
- JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RecordControlEditor);
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RecordControlEditor);
};
diff --git a/Source/Processors/RecordNode.cpp b/Source/Processors/RecordNode.cpp
deleted file mode 100755
index f66b720480293aed9206250a8ba2a8c7be33ec63..0000000000000000000000000000000000000000
--- a/Source/Processors/RecordNode.cpp
+++ /dev/null
@@ -1,864 +0,0 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-*/
-
-#include "RecordNode.h"
-#include "ProcessorGraph.h"
-#include "../UI/EditorViewport.h"
-#include "../UI/ControlPanel.h"
-
-#include "Channel.h"
-
-RecordNode::RecordNode()
- : GenericProcessor("Record Node"),
- newDirectoryNeeded(true), zeroBuffer(1, 50000), timestamp(0),
- appendTrialNum(false), trialNum(0)
-{
-
- isProcessing = false;
- isRecording = false;
- allFilesOpened = false;
- blockIndex = 0;
- signalFilesShouldClose = false;
-
- continuousDataIntegerBuffer = new int16[10000];
- continuousDataFloatBuffer = new float[10000];
- signalFilesShouldClose = false;
-
- settings.numInputs = 2048;
- settings.numOutputs = 0;
-
- eventChannel = new Channel(this, 0);
- eventChannel->isEventChannel = true;
-
- recordMarker = new char[10];
- for (int i = 0; i < 9; i++)
- {
- recordMarker[i] = i;
- }
- recordMarker[9] = 255;
-
- recordingNumber = 0;
-
- // 128 inputs, 0 outputs
- setPlayConfigDetails(getNumInputs(),getNumOutputs(),44100.0,128);
-
- zeroBuffer.clear();
-
-}
-
-
-RecordNode::~RecordNode()
-{
-
-}
-
-void RecordNode::setChannel(Channel* ch)
-{
-
- int channelNum = channelPointers.indexOf(ch);
-
- std::cout << "Record node setting channel to " << channelNum << std::endl;
-
- setCurrentChannel(channelNum);
-
- // for (int i = 0; i < con.size(); i++)
- // {
-
- // if (continuousChannels[i].nodeId == id &&
- // continuousChannels[i].chan == chan)
- // {
- // std::cout << "Found channel " << i << std::endl;
- // setCurrentChannel(i);
- // break;
- // }
-
- // }
-}
-
-void RecordNode::setChannelStatus(Channel* ch, bool status)
-{
-
- //std::cout << "Setting channel status!" << std::endl;
- setChannel(ch);
-
- if (status)
- setParameter(2, 1.0f);
- else
- setParameter(2, 0.0f);
-
-}
-
-// void RecordNode::enableCurrentChannel(bool state)
-// {
-// continuousChannels[nextAvailableChannel].isRecording = state;
-// }
-
-void RecordNode::resetConnections()
-{
- //std::cout << "Resetting connections" << std::endl;
- nextAvailableChannel = 0;
- wasConnected = false;
-
- channelPointers.clear();
- eventChannelPointers.clear();
-
-
-
-}
-
-void RecordNode::filenameComponentChanged(FilenameComponent* fnc)
-{
-
- //std::cout << "Got a new file" << std::endl;
- dataDirectory = fnc->getCurrentFile();
- // std::cout << "File name: " << dataDirectory.getFullPathName();
- // if (dataDirectory.isDirectory())
- // std::cout << " is a directory." << std::endl;
- // else
- // std::cout << " is NOT a directory." << std::endl;
-
- //createNewDirectory();
-
-
-
-}
-
-
-void RecordNode::addInputChannel(GenericProcessor* sourceNode, int chan)
-{
-
- if (chan != getProcessorGraph()->midiChannelIndex)
- {
-
- int channelIndex = getNextChannel(false);
-
- setPlayConfigDetails(channelIndex+1,0,44100.0,128);
-
- channelPointers.add(sourceNode->channels[chan]);
-
- // std::cout << channelIndex << std::endl;
-
- updateFileName(channelPointers[channelIndex]);
-
-
-
- //if (channelPointers[channelIndex]->isRecording)
- // std::cout << " This channel will be recorded." << std::endl;
- //else
- // std::cout << " This channel will NOT be recorded." << std::endl;
-
- //std::cout << "adding channel " << getNextChannel(false) << std::endl;
-
- //std::pair<int, Channel> newPair (getNextChannel(false), newChannel);
-
- //std::cout << "adding channel " << getNextChannel(false) << std::endl;
-
- //continuouschannelPointers.insert(newPair);
-
-
- }
- else
- {
-
- for (int n = 0; n < sourceNode->eventChannels.size(); n++)
- {
-
- eventChannelPointers.add(sourceNode->eventChannels[n]);
-
- }
-
- }
-
-}
-
-void RecordNode::updateFileName(Channel* ch)
-{
- String filename = rootFolder.getFullPathName();
- filename += rootFolder.separatorString;
-
- if (!ch->isEventChannel)
- {
- filename += ch->nodeId;
- filename += "_";
- filename += ch->name;
-
- if (appendTrialNum)
- {
- filename += "_";
- filename += trialNum;
- }
-
- filename += ".continuous";
- }
- else
- {
- filename += "all_channels.events";
- }
-
-
- ch->filename = filename;
- ch->file = 0;
-
-
- //std::cout << "Updating " << filename << std::endl;
-
-}
-
-void RecordNode::updateTrialNumber()
-{
- trialNum++;
-}
-
-void RecordNode::appendTrialNumber(bool t)
-{
- appendTrialNum = t;
-}
-
-void RecordNode::createNewDirectory()
-{
- std::cout << "Creating new directory." << std::endl;
-
- rootFolder = File(dataDirectory.getFullPathName() + File::separator + generateDirectoryName());
-
- updateFileName(eventChannel);
-
- for (int i = 0; i < channelPointers.size(); i++)
- {
- updateFileName(channelPointers[i]);
- }
-
- newDirectoryNeeded = false;
-
- trialNum = 0;
-
-}
-
-void RecordNode::createNewFiles()
-{
- for (int i = 0; i < channelPointers.size(); i++)
- {
- updateFileName(channelPointers[i]);
- }
-
-}
-
-String RecordNode::generateDirectoryName()
-{
- Time calendar = Time::getCurrentTime();
-
- Array<int> t;
- t.add(calendar.getYear());
- t.add(calendar.getMonth()+1); // January = 0
- t.add(calendar.getDayOfMonth());
- t.add(calendar.getHours());
- t.add(calendar.getMinutes());
- t.add(calendar.getSeconds());
-
- String filename = getControlPanel()->getTextToPrepend();
-
- String datestring = "";
-
- for (int n = 0; n < t.size(); n++)
- {
- if (t[n] < 10)
- datestring += "0";
-
- datestring += t[n];
-
- if (n == 2)
- datestring += "_";
- else if (n < 5)
- datestring += "-";
- }
-
- getControlPanel()->setDateText(datestring);
-
- filename += datestring;
- filename += getControlPanel()->getTextToAppend();
-
- return filename;
-
-}
-
-String RecordNode::generateDateString()
-{
- Time calendar = Time::getCurrentTime();
-
- String datestring;
-
- datestring += String(calendar.getDayOfMonth());
- datestring += "-";
- datestring += calendar.getMonthName(true);
- datestring += "-";
- datestring += String(calendar.getYear());
- datestring += " ";
-
- int hrs, mins, secs;
- hrs = calendar.getHours();
- mins = calendar.getMinutes();
- secs = calendar.getSeconds();
-
- datestring += hrs;
-
- if (mins < 10)
- datestring += 0;
-
- datestring += mins;
-
- if (secs < 0)
- datestring += 0;
-
- datestring += secs;
-
- return datestring;
-
-}
-
-
-void RecordNode::setParameter(int parameterIndex, float newValue)
-{
- //editor->updateParameterButtons(parameterIndex);
-
- // 0 = stop recording
- // 1 = start recording
- // 2 = toggle individual channel (0.0f = OFF, anything else = ON)
-
- if (parameterIndex == 1)
- {
-
- isRecording = true;
- // std::cout << "START RECORDING." << std::endl;
-
- if (newDirectoryNeeded)
- {
- createNewDirectory();
- recordingNumber = 0;
- }
- else
- {
- recordingNumber++; // increment recording number within this directory
- }
-
- if (!rootFolder.exists())
- {
- rootFolder.createDirectory();
- String settingsFileName = rootFolder.getFullPathName() + File::separator + "settings.xml";
- getEditorViewport()->saveState(File(settingsFileName));
- }
-
- createNewFiles();
-
- openFile(eventChannel);
-
- blockIndex = 0; // reset index
-
-
- // create / open necessary files
- for (int i = 0; i < channelPointers.size(); i++)
- {
- // std::cout << "Checking channel " << i << std::endl;
-
- if (channelPointers[i]->getRecordState())
- {
- openFile(channelPointers[i]);
- }
- }
-
- allFilesOpened = true;
-
- }
- else if (parameterIndex == 0)
- {
-
-
- // std::cout << "STOP RECORDING." << std::endl;
-
- if (isRecording)
- {
-
- // close necessary files
- signalFilesShouldClose = true;
-
- }
-
- isRecording = false;
-
-
- }
- else if (parameterIndex == 2)
- {
-
- if (isProcessing)
- {
-
- std::cout << "Toggling channel " << currentChannel << std::endl;
-
- if (newValue == 0.0f)
- {
- channelPointers[currentChannel]->setRecordState(false);
-
- if (isRecording)
- {
-
- if (blockIndex < BLOCK_LENGTH)
- {
- // fill out the rest of the current buffer
- writeContinuousBuffer(zeroBuffer.getReadPointer(0), BLOCK_LENGTH - blockIndex, currentChannel);
- }
-
- closeFile(channelPointers[currentChannel]);
- }
-
- }
- else
- {
- channelPointers[currentChannel]->setRecordState(true);
-
- if (isRecording)
- {
-
- openFile(channelPointers[currentChannel]);
-
- if (blockIndex > 0)
- {
- writeTimestampAndSampleCount(channelPointers[currentChannel]->file);
- // fill up the first data block up to sample count
- writeContinuousBuffer(zeroBuffer.getReadPointer(0), blockIndex, currentChannel);
- }
-
- }
- }
- }
- }
-}
-
-void RecordNode::openFile(Channel* ch)
-{
- std::cout << "OPENING FILE: " << ch->filename << std::endl;
-
- File f = File(ch->filename);
- FILE* chFile;
-
- bool fileExists = f.exists();
-
- diskWriteLock.enter();
-
- chFile = fopen(ch->filename.toUTF8(), "ab");
-
- if (!fileExists)
- {
- // create and write header
- std::cout << "Writing header." << std::endl;
- String header = generateHeader(ch);
- //std::cout << header << std::endl;
- std::cout << "File ID: " << chFile << ", number of bytes: " << header.getNumBytesAsUTF8() << std::endl;
-
-
- fwrite(header.toUTF8(), 1, header.getNumBytesAsUTF8(), chFile);
-
- std::cout << "Wrote header." << std::endl;
-
- std::cout << "Block index: " << blockIndex << std::endl;
-
- }
- else
- {
- std::cout << "File already exists, just opening." << std::endl;
- }
-
- diskWriteLock.exit();
-
- //To avoid a race condition resulting on data written before the header,
- //do not assign the channel pointer until the header has been written
- ch->file = chFile;
-
-
-}
-
-void RecordNode::closeFile(Channel* ch)
-{
-
- diskWriteLock.enter();
-
- std::cout << "CLOSING FILE: " << ch->filename << std::endl;
- if (ch->file != NULL)
- fclose(ch->file);
-
- diskWriteLock.exit();
-}
-
-String RecordNode::generateHeader(Channel* ch)
-{
-
- String header = "header.format = 'Open Ephys Data Format'; \n";
-
- header += "header.version = 0.2;";
- header += "header.header_bytes = ";
- header += String(HEADER_SIZE);
- header += ";\n";
-
- if (ch->isEventChannel)
- {
- header += "header.description = 'each record contains one 64-bit timestamp, one 16-bit sample position, one uint8 event type, one uint8 processor ID, one uint8 event ID, one uint8 event channel, and one uint16 recordingNumber'; \n";
-
- }
- else
- {
- header += "header.description = 'each record contains one 64-bit timestamp, one 16-bit sample count (N), 1 uint16 recordingNumber, N 16-bit samples, and one 10-byte record marker (0 1 2 3 4 5 6 7 8 255)'; \n";
- }
-
-
- header += "header.date_created = '";
- header += generateDateString();
- header += "';\n";
-
- header += "header.channel = '";
- header += ch->name;
- header += "';\n";
-
- if (ch->isEventChannel)
- {
-
- header += "header.channelType = 'Event';\n";
- }
- else
- {
- header += "header.channelType = 'Continuous';\n";
- }
-
- header += "header.sampleRate = ";
- // all channels need to have the same sample rate under the current scheme
- header += String(channelPointers[0]->sampleRate);
- header += ";\n";
- header += "header.blockLength = ";
- header += BLOCK_LENGTH;
- header += ";\n";
- header += "header.bufferSize = ";
- header += getAudioComponent()->getBufferSize();
- header += ";\n";
- header += "header.bitVolts = ";
- header += String(ch->bitVolts);
- header += ";\n";
-
- header = header.paddedRight(' ', HEADER_SIZE);
-
- //std::cout << header << std::endl;
-
- return header;
-
-}
-
-void RecordNode::closeAllFiles()
-{
- if (allFilesOpened)
- {
- for (int i = 0; i < channelPointers.size(); i++)
- {
- if (channelPointers[i]->getRecordState())
- {
-
- if (blockIndex < BLOCK_LENGTH)
- {
- // fill out the rest of the current buffer
- writeContinuousBuffer(zeroBuffer.getReadPointer(0), BLOCK_LENGTH - blockIndex, i);
- }
-
- closeFile(channelPointers[i]);
- }
- }
-
- closeFile(eventChannel);
- blockIndex = 0; // back to the beginning of the block
- allFilesOpened = false;
- }
-}
-
-bool RecordNode::enable()
-{
-
- isProcessing = true;
- return true;
-}
-
-
-bool RecordNode::disable()
-{
- // close files if necessary
- setParameter(0, 10.0f);
-
- if (isProcessing)
- closeAllFiles();
-
- isProcessing = false;
-
- return true;
-}
-
-float RecordNode::getFreeSpace()
-{
- return 1.0f - float(dataDirectory.getBytesFreeOnVolume())/float(dataDirectory.getVolumeTotalSize());
-}
-
-void RecordNode::writeContinuousBuffer(const float* data, int nSamples, int channel)
-{
-
- // check to see if the file exists
- if (channelPointers[channel]->file == NULL)
- return;
-
- // scale the data back into the range of int16
- float scaleFactor = float(0x7fff) * channelPointers[channel]->bitVolts;
- for (int n = 0; n < nSamples; n++)
- {
- *(continuousDataFloatBuffer+n) = *(data+n) / scaleFactor;
- }
- AudioDataConverters::convertFloatToInt16BE(continuousDataFloatBuffer, continuousDataIntegerBuffer, nSamples);
-
- if (blockIndex == 0)
- {
- writeTimestampAndSampleCount(channelPointers[channel]->file);
- }
-
- diskWriteLock.enter();
-
- size_t count = fwrite(continuousDataIntegerBuffer, // ptr
- 2, // size of each element
- nSamples, // count
- channelPointers[channel]->file); // ptr to FILE object
-
- jassert(count == nSamples); // make sure all the data was written
-
- diskWriteLock.exit();
-
- if (blockIndex + nSamples == BLOCK_LENGTH)
- {
- writeRecordMarker(channelPointers[channel]->file);
- }
-
-}
-
-void RecordNode::writeTimestampAndSampleCount(FILE* file)
-{
-
-
- diskWriteLock.enter();
-
- uint16 samps = BLOCK_LENGTH;
-
- fwrite(×tamp, // ptr
- 8, // size of each element
- 1, // count
- file); // ptr to FILE object
-
- fwrite(&samps, // ptr
- 2, // size of each element
- 1, // count
- file); // ptr to FILE object
-
- fwrite(&recordingNumber, // ptr
- 2, // size of each element
- 1, // count
- file); // ptr to FILE object
-
- diskWriteLock.exit();
-
-}
-
-void RecordNode::writeRecordMarker(FILE* file)
-{
- // write a 10-byte marker indicating the end of a record
-
- diskWriteLock.enter();
- fwrite(recordMarker, // ptr
- 1, // size of each element
- 10, // count
- file); // ptr to FILE object
-
- diskWriteLock.exit();
-
-}
-
-void RecordNode::writeEventBuffer(MidiMessage& event, int samplePosition) //, int node, int channel)
-{
- // find file and write samples to disk
- // std::cout << "Received event!" << std::endl;
-
- if (eventChannel->file == NULL)
- return;
-
- const uint8* dataptr = event.getRawData();
-
- if (event.getNoteNumber() > 0) // processor ID > 0
- {
- uint64 samplePos = (uint64) samplePosition;
-
- int64 eventTimestamp = timestamp + samplePos; // add the sample position to the buffer timestamp
-
- diskWriteLock.enter();
-
- fwrite(&eventTimestamp, // ptr
- 8, // size of each element
- 1, // count
- eventChannel->file); // ptr to FILE object
-
- fwrite(&samplePos, // ptr
- 2, // size of each element
- 1, // count
- eventChannel->file); // ptr to FILE object
-
- // write 1st four bytes of event (type, nodeId, eventId, eventChannel)
- fwrite(dataptr, 1, 4, eventChannel->file);
-
- // write recording number
- fwrite(&recordingNumber, // ptr
- 2, // size of each element
- 1, // count
- eventChannel->file); // ptr to FILE object
-
- diskWriteLock.exit();
- }
-
-}
-
-void RecordNode::handleEvent(int eventType, MidiMessage& event, int samplePosition)
-{
- if (eventType == TTL)
- {
- writeEventBuffer(event, samplePosition);
- }
- else if (eventType == TIMESTAMP)
- {
- const uint8* dataptr = event.getRawData();
-
- // // double-check buffer contents:s
- // std::cout << (int) *(dataptr + 11) << " " <<
- // (int) *(dataptr + 10) << " " <<
- // (int) *(dataptr + 9) << " " <<
- // (int) *(dataptr + 8) << " " <<
- // (int) *(dataptr + 7) << " " <<
- // (int) *(dataptr + 6) << " " <<
- // (int) *(dataptr + 5) << " " <<
- // (int) *(dataptr + 4) << std::endl;
-
- memcpy(×tamp, dataptr + 4, 8); // remember to skip first four bytes
- }
-
-}
-
-void RecordNode::process(AudioSampleBuffer& buffer,
- MidiBuffer& events,
- int& nSamples)
-{
-
- // TERMINOLOGY:
- // buffer -- incoming data stored in AudioSampleBuffer (nSamples long)
- // block -- 1024-sample sequence for disk writing (BLOCK_LENGTH long)
- // samplesWritten -- number of samples written from the current buffer
- // blockIndex -- index within the current block (used outside this function)
- // numSamplesToWrite -- number of unwritten samples from the buffer
-
- // CONSTRAINTS:
- // samplesWritten must equal nSamples by the end of the process() method
-
- if (isRecording && allFilesOpened)
- {
-
- // FIRST: cycle through events -- extract the TTLs and the timestamps
- checkForEvents(events);
-
- // SECOND: cycle through buffer channels
- int samplesWritten = 0;
-
- if (channelPointers.size() > 0)
- {
-
- while (samplesWritten < nSamples) // there are still unwritten samples in the buffer
- {
-
- int numSamplesToWrite = nSamples - samplesWritten; // samples remaining in the buffer
-
- if (blockIndex + numSamplesToWrite < BLOCK_LENGTH) // we still have space in this block
- {
-
- for (int i = 0; i < buffer.getNumChannels(); i++)
- {
-
- if (channelPointers[i]->getRecordState())
- {
- // write buffer to disk!
- writeContinuousBuffer(buffer.getReadPointer(i,samplesWritten),
- numSamplesToWrite,
- i);
-
- }
- }
-
- // update our variables
- samplesWritten += numSamplesToWrite;
- timestamp += numSamplesToWrite;
- blockIndex += numSamplesToWrite;
-
- }
- else // there's not enough space left in this block for all remaining samples
- {
-
- numSamplesToWrite = BLOCK_LENGTH - blockIndex;
-
- for (int i = 0; i < buffer.getNumChannels(); i++)
- {
-
- if (channelPointers[i]->getRecordState())
- {
- // write buffer to disk!
- writeContinuousBuffer(buffer.getReadPointer(i,samplesWritten),
- numSamplesToWrite,
- i);
-
- //std::cout << "Record channel " << i << std::endl;
- }
- }
-
- // update our variables
- samplesWritten += numSamplesToWrite;
- timestamp += numSamplesToWrite;
- blockIndex = 0; // back to the beginning of the block
-
- }
- }
- }
-
- // std::cout << nSamples << " " << samplesWritten << " " << blockIndex << std::endl;
-
- return;
-
- }
-
- // this is intended to prevent parameter changes from closing files
- // before recording stops
- if (signalFilesShouldClose)
- {
- closeAllFiles();
- signalFilesShouldClose = false;
- }
-
-}
diff --git a/Source/Processors/RecordNode/EngineConfigWindow.cpp b/Source/Processors/RecordNode/EngineConfigWindow.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..d93b6428fc586dd454d05808e3e9ef824c7936e3
--- /dev/null
+++ b/Source/Processors/RecordNode/EngineConfigWindow.cpp
@@ -0,0 +1,189 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#include "EngineConfigWindow.h"
+
+EngineParameterComponent::EngineParameterComponent(EngineParameter ¶m)
+ : Component(param.name), type(param.type), parameter(param)
+{
+ if (param.type == EngineParameter::BOOL)
+ {
+ ToggleButton* but = new ToggleButton();
+ but->setToggleState(param.boolParam.value,dontSendNotification);
+ but->setBounds(120,0,20,20);
+ addAndMakeVisible(but);
+ control = but;
+ }
+ else
+ {
+ Label* lab = new Label();
+ lab->setFont(Font("Small Text",10,Font::plain));
+ switch (param.type)
+ {
+ case EngineParameter::INT:
+ lab->setText(String(param.intParam.value),dontSendNotification);
+ lab->setBounds(120,0,50,20);
+ break;
+ case EngineParameter::FLOAT:
+ lab->setText(String(param.floatParam.value),dontSendNotification);
+ lab->setBounds(120,0,50,20);
+ break;
+ case EngineParameter::STR:
+ lab->setText(String(param.strParam.value),dontSendNotification);
+ lab->setBounds(120,0,150,20);
+ }
+ lab->setEditable(true);
+ lab->setColour(Label::ColourIds::backgroundColourId,Colours::lightgrey);
+ lab->setColour(Label::ColourIds::outlineColourId,Colours::black);
+ lab->addListener(this);
+ addAndMakeVisible(lab);
+ control = lab;
+ }
+}
+
+EngineParameterComponent::~EngineParameterComponent()
+{
+}
+
+void EngineParameterComponent::paint(Graphics& g)
+{
+ g.setColour(Colours::black);
+ g.setFont(13);
+ g.drawText(parameter.name+":",0,0,100,30,Justification::left,false);
+}
+
+void EngineParameterComponent::labelTextChanged(Label *l)
+{
+ if (parameter.type == EngineParameter::INT)
+ {
+ int value = l->getText().getIntValue();
+ if (value < parameter.intParam.min)
+ value = parameter.intParam.min;
+ if (value > parameter.intParam.max)
+ value = parameter.intParam.max;
+ l->setText(String(value),dontSendNotification);
+ }
+ else if (parameter.type == EngineParameter::FLOAT)
+ {
+ float value = l->getText().getFloatValue();
+ if (value < parameter.floatParam.min)
+ value = parameter.floatParam.min;
+ if (value > parameter.floatParam.max)
+ value = parameter.floatParam.max;
+ l->setText(String(value),dontSendNotification);
+ }
+}
+
+void EngineParameterComponent::saveValue()
+{
+ switch (parameter.type)
+ {
+ case EngineParameter::BOOL:
+ parameter.boolParam.value = ((ToggleButton*)control.get())->getToggleState();
+ break;
+ case EngineParameter::INT:
+ parameter.intParam.value = ((Label*)control.get())->getText().getIntValue();
+ if (parameter.intParam.value < parameter.intParam.min)
+ parameter.intParam.value = parameter.intParam.min;
+ if (parameter.intParam.value > parameter.intParam.max)
+ parameter.intParam.value = parameter.intParam.max;
+ break;
+ case EngineParameter::FLOAT:
+ parameter.floatParam.value = ((Label*)control.get())->getText().getFloatValue();
+ if (parameter.floatParam.value < parameter.floatParam.min)
+ parameter.floatParam.value = parameter.floatParam.min;
+ if (parameter.floatParam.value > parameter.floatParam.max)
+ parameter.floatParam.value = parameter.floatParam.max;
+ break;
+ case EngineParameter::STR:
+ parameter.strParam.value = ((Label*)control.get())->getText();
+ break;
+ }
+}
+
+EngineConfigComponent::EngineConfigComponent(RecordEngineManager* man, int height)
+ : Component(man->getID())
+{
+ bool hasString = false;
+ setName(man->getName()+" Recording Configuration");
+
+ for (int i = 0; i < man->getNumParameters(); i++)
+ {
+ EngineParameterComponent* par = new EngineParameterComponent(man->getParameter(i));
+ if (man->getParameter(i).type == EngineParameter::STR)
+ hasString=true;
+ par->setBounds(10,10+40*i,300,30);
+ addAndMakeVisible(par);
+ parameters.add(par);
+ }
+ if (hasString)
+ this->setSize(300,height);
+ else
+ this->setSize(200,height);
+}
+
+EngineConfigComponent::~EngineConfigComponent()
+{
+}
+
+void EngineConfigComponent::saveParameters()
+{
+ for (int i=0; i < parameters.size(); i++)
+ parameters[i]->saveValue();
+}
+
+void EngineConfigComponent::paint(Graphics& g)
+{
+ g.setColour(Colours::darkgrey);
+ g.fillAll();
+}
+
+EngineConfigWindow::EngineConfigWindow(RecordEngineManager* man)
+ : DocumentWindow("RecordEngine Configuration", Colours::red,
+ DocumentWindow::closeButton), manager(man)
+{
+ int height = man->getNumParameters() * 50;
+ if (height == 0)
+ height = 10;
+ centreWithSize(200,height);
+ setUsingNativeTitleBar(true);
+ setResizable(false,false);
+ setName(man->getName()+" recording configuration");
+
+ ui = new EngineConfigComponent(man,height);
+ setContentOwned(ui,true);
+}
+
+EngineConfigWindow::~EngineConfigWindow()
+{
+}
+
+void EngineConfigWindow::closeButtonPressed()
+{
+ manager->toggleConfigWindow();
+}
+
+void EngineConfigWindow::saveParameters()
+{
+ ui->saveParameters();
+}
\ No newline at end of file
diff --git a/Source/Processors/RecordNode/EngineConfigWindow.h b/Source/Processors/RecordNode/EngineConfigWindow.h
new file mode 100644
index 0000000000000000000000000000000000000000..d45e062f094da6ac28a51b6f1fbc0b0270cc32c8
--- /dev/null
+++ b/Source/Processors/RecordNode/EngineConfigWindow.h
@@ -0,0 +1,81 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#ifndef ENGINECONFIGWINDOW_H_INCLUDED
+#define ENGINECONFIGWINDOW_H_INCLUDED
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "RecordEngine.h"
+
+class EngineParameterComponent : public Component,
+ public Label::Listener
+{
+public:
+ EngineParameterComponent(EngineParameter& param);
+ ~EngineParameterComponent();
+
+ void paint(Graphics& g);
+ void labelTextChanged(Label* lab);
+
+ void saveValue();
+
+private:
+ ScopedPointer<Component> control;
+ EngineParameter::EngineParameterType type;
+ EngineParameter& parameter;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(EngineParameterComponent);
+};
+
+class EngineConfigComponent : public Component
+{
+public:
+ EngineConfigComponent(RecordEngineManager *man, int height);
+ ~EngineConfigComponent();
+ void paint(Graphics& g);
+ void saveParameters();
+
+private:
+ OwnedArray<EngineParameterComponent> parameters;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(EngineConfigComponent);
+};
+
+class EngineConfigWindow : public DocumentWindow
+{
+public:
+ EngineConfigWindow(RecordEngineManager* man);
+ ~EngineConfigWindow();
+ void saveParameters();
+
+private:
+ RecordEngineManager* manager;
+ void closeButtonPressed();
+ ScopedPointer<EngineConfigComponent> ui;
+
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(EngineConfigWindow);
+
+};
+
+
+
+#endif // ENGINECONFIGWINDOW_H_INCLUDED
diff --git a/Source/Processors/RecordNode/HDF5FileFormat.cpp b/Source/Processors/RecordNode/HDF5FileFormat.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..62a7466c5079695a0dd4ffd445d506e9ed1eec26
--- /dev/null
+++ b/Source/Processors/RecordNode/HDF5FileFormat.cpp
@@ -0,0 +1,903 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#include <H5Cpp.h>
+#include "HDF5FileFormat.h"
+
+#ifndef CHUNK_XSIZE
+#define CHUNK_XSIZE 256
+#endif
+
+#ifndef EVENT_CHUNK_SIZE
+#define EVENT_CHUNK_SIZE 8
+#endif
+
+#ifndef SPIKE_CHUNK_XSIZE
+#define SPIKE_CHUNK_XSIZE 8
+#endif
+
+#ifndef SPIKE_CHUNK_YSIZE
+#define SPIKE_CHUNK_YSIZE 40
+#endif
+
+#define MAX_TRANSFORM_SIZE 512
+
+#define MAX_STR_SIZE 256
+
+#define PROCESS_ERROR std::cerr << error.getCDetailMsg() << std::endl; return -1
+#define CHECK_ERROR(x) if (x) std::cerr << "Error at HDFRecording " << __LINE__ << std::endl;
+
+using namespace H5;
+
+//HDF5FileBase
+
+HDF5FileBase::HDF5FileBase() : readyToOpen(false), opened(false)
+{
+ Exception::dontPrint();
+};
+
+HDF5FileBase::~HDF5FileBase()
+{
+ close();
+}
+
+bool HDF5FileBase::isOpen() const
+{
+ return opened;
+}
+
+int HDF5FileBase::open()
+{
+ if (!readyToOpen) return -1;
+ if (File(getFileName()).existsAsFile())
+ return open(false);
+ else
+ return open(true);
+
+}
+
+int HDF5FileBase::open(bool newfile)
+{
+ int accFlags,ret=0;
+
+ if (opened) return -1;
+
+ try
+ {
+
+ if (newfile) accFlags = H5F_ACC_TRUNC;
+ else accFlags = H5F_ACC_RDWR;
+ file = new H5File(getFileName().toUTF8(),accFlags);
+ opened = true;
+ if (newfile)
+ {
+ ret = createFileStructure();
+ }
+
+ if (ret)
+ {
+ file = nullptr;
+ opened = false;
+ std::cerr << "Error creating file structure" << std::endl;
+ }
+
+
+ return ret;
+ }
+ catch (FileIException error)
+ {
+ PROCESS_ERROR;
+ }
+}
+
+void HDF5FileBase::close()
+{
+ file = nullptr;
+ opened = false;
+}
+
+int HDF5FileBase::setAttribute(DataTypes type, void* data, String path, String name)
+{
+ Group loc;
+ Attribute attr;
+ DataType H5type;
+ DataType origType;
+
+ if (!opened) return -1;
+ try
+ {
+ loc = file->openGroup(path.toUTF8());
+
+ H5type = getH5Type(type);
+ origType = getNativeType(type);
+
+ if (loc.attrExists(name.toUTF8()))
+ {
+ attr = loc.openAttribute(name.toUTF8());
+ }
+ else
+ {
+ DataSpace attr_dataspace(H5S_SCALAR);
+ attr = loc.createAttribute(name.toUTF8(),H5type,attr_dataspace);
+ }
+
+ attr.write(origType,data);
+
+ }
+ catch (GroupIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (AttributeIException error)
+ {
+ PROCESS_ERROR;
+ }
+
+ return 0;
+}
+
+int HDF5FileBase::setAttributeStr(String value, String path, String name)
+{
+ Group loc;
+ Attribute attr;
+
+ if (!opened) return -1;
+
+ StrType type(PredType::C_S1, value.length());
+ try
+ {
+ loc = file->openGroup(path.toUTF8());
+
+ if (loc.attrExists(name.toUTF8()))
+ {
+ //attr = loc.openAttribute(name.toUTF8());
+ return -1; //string attributes cannot change size easily, better not allow overwritting.
+ }
+ else
+ {
+ DataSpace attr_dataspace(H5S_SCALAR);
+ attr = loc.createAttribute(name.toUTF8(), type, attr_dataspace);
+ }
+ attr.write(type,value.toUTF8());
+
+ }
+ catch (GroupIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (AttributeIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (FileIException error)
+ {
+ PROCESS_ERROR;
+ }
+
+ return 0;
+}
+
+int HDF5FileBase::createGroup(String path)
+{
+ if (!opened) return -1;
+ try
+ {
+ file->createGroup(path.toUTF8());
+ }
+ catch (FileIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (GroupIException error)
+ {
+ PROCESS_ERROR;
+ }
+ return 0;
+}
+
+HDF5RecordingData* HDF5FileBase::getDataSet(String path)
+{
+ ScopedPointer<DataSet> data;
+
+ if (!opened) return nullptr;
+
+ try
+ {
+ data = new DataSet(file->openDataSet(path.toUTF8()));
+ return new HDF5RecordingData(data.release());
+ }
+ catch (DataSetIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+ catch (FileIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+ catch (DataSpaceIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+}
+
+HDF5RecordingData* HDF5FileBase::createDataSet(DataTypes type, int sizeX, int chunkX, String path)
+{
+ int chunks[3] = {chunkX, 0, 0};
+ return createDataSet(type,1,&sizeX,chunks,path);
+}
+
+HDF5RecordingData* HDF5FileBase::createDataSet(DataTypes type, int sizeX, int sizeY, int chunkX, String path)
+{
+ int size[2];
+ int chunks[3] = {chunkX, 0, 0};
+ size[0] = sizeX;
+ size[1] = sizeY;
+ return createDataSet(type,2,size,chunks,path);
+}
+
+HDF5RecordingData* HDF5FileBase::createDataSet(DataTypes type, int sizeX, int sizeY, int sizeZ, int chunkX, String path)
+{
+ int size[3];
+ int chunks[3] = {chunkX, 0, 0};
+ size[0] = sizeX;
+ size[1] = sizeY;
+ size[2] = sizeZ;
+ return createDataSet(type,2,size,chunks,path);
+}
+
+HDF5RecordingData* HDF5FileBase::createDataSet(DataTypes type, int sizeX, int sizeY, int sizeZ, int chunkX, int chunkY, String path)
+{
+ int size[3];
+ int chunks[3] = {chunkX, chunkY, 0};
+ size[0] = sizeX;
+ size[1] = sizeY;
+ size[2] = sizeZ;
+ return createDataSet(type,3,size,chunks,path);
+}
+
+HDF5RecordingData* HDF5FileBase::createDataSet(DataTypes type, int dimension, int* size, int* chunking, String path)
+{
+ ScopedPointer<DataSet> data;
+ DSetCreatPropList prop;
+ if (!opened) return nullptr;
+
+ //Right now this classes don't support datasets with rank > 3.
+ //If it's needed in the future we can extend them to be of generic rank
+ if ((dimension > 3) || (dimension < 1)) return nullptr;
+
+ DataType H5type = getH5Type(type);
+
+ hsize_t dims[3], chunk_dims[3], max_dims[3];
+
+ for (int i=0; i < dimension; i++)
+ {
+ dims[i] = size[i];
+ if (chunking[i] > 0)
+ {
+ chunk_dims[i] = chunking[i];
+ max_dims[i] = H5S_UNLIMITED;
+ }
+ else
+ {
+ chunk_dims[i] = size[i];
+ max_dims[i] = size[i];
+ }
+ }
+
+ try
+ {
+ DataSpace dSpace(dimension,dims,max_dims);
+ prop.setChunk(dimension,chunk_dims);
+
+ data = new DataSet(file->createDataSet(path.toUTF8(),H5type,dSpace,prop));
+ return new HDF5RecordingData(data.release());
+ }
+ catch (DataSetIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+ catch (FileIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+ catch (DataSpaceIException error)
+ {
+ error.printError();
+ return nullptr;
+ }
+
+
+}
+
+H5::DataType HDF5FileBase::getNativeType(DataTypes type)
+{
+ switch (type)
+ {
+ case I8:
+ return PredType::NATIVE_INT8;
+ break;
+ case I16:
+ return PredType::NATIVE_INT16;
+ break;
+ case I32:
+ return PredType::NATIVE_INT32;
+ break;
+ case I64:
+ return PredType::NATIVE_INT64;
+ break;
+ case U8:
+ return PredType::NATIVE_UINT8;
+ break;
+ case U16:
+ return PredType::NATIVE_UINT16;
+ break;
+ case U32:
+ return PredType::NATIVE_UINT32;
+ break;
+ case U64:
+ return PredType::NATIVE_UINT64;
+ break;
+ case F32:
+ return PredType::NATIVE_FLOAT;
+ break;
+ case STR:
+ return StrType(PredType::C_S1,MAX_STR_SIZE);
+ break;
+ }
+ return PredType::NATIVE_INT32;
+}
+
+H5::DataType HDF5FileBase::getH5Type(DataTypes type)
+{
+ switch (type)
+ {
+ case I8:
+ return PredType::STD_I8LE;
+ break;
+ case I16:
+ return PredType::STD_I16LE;
+ break;
+ case I32:
+ return PredType::STD_I32LE;
+ break;
+ case I64:
+ return PredType::STD_I64LE;
+ break;
+ case U8:
+ return PredType::STD_U8LE;
+ break;
+ case U16:
+ return PredType::STD_U16LE;
+ break;
+ case U32:
+ return PredType::STD_U32LE;
+ break;
+ case U64:
+ return PredType::STD_U64LE;
+ break;
+ case F32:
+ return PredType::IEEE_F32LE;
+ break;
+ case STR:
+ return StrType(PredType::C_S1,MAX_STR_SIZE);
+ break;
+ }
+ return PredType::STD_I32LE;
+}
+
+HDF5RecordingData::HDF5RecordingData(DataSet* data)
+{
+ DataSpace dSpace;
+ DSetCreatPropList prop;
+ ScopedPointer<DataSet> dataSet = data;
+ hsize_t dims[3], chunk[3];
+
+ dSpace = dataSet->getSpace();
+ prop = dataSet->getCreatePlist();
+
+ dimension = dSpace.getSimpleExtentDims(dims);
+ prop.getChunk(dimension,chunk);
+
+ this->size[0] = dims[0];
+ if (dimension > 1)
+ this->size[1] = dims[1];
+ else
+ this->size[1] = 1;
+ if (dimension > 1)
+ this->size[2] = dims[2];
+ else
+ this->size[2] = 1;
+
+ this->xChunkSize = chunk[0];
+ this->xPos = dims[0];
+ this->dSet = dataSet;
+ this->rowXPos = 0;
+ this->rowDataSize = 0;
+}
+
+HDF5RecordingData::~HDF5RecordingData()
+{
+}
+int HDF5RecordingData::writeDataBlock(int xDataSize, HDF5FileBase::DataTypes type, void* data)
+{
+ return writeDataBlock(xDataSize,size[1],type,data);
+}
+
+int HDF5RecordingData::writeDataBlock(int xDataSize, int yDataSize, HDF5FileBase::DataTypes type, void* data)
+{
+ hsize_t dim[3],offset[3];
+ DataSpace fSpace;
+ DataType nativeType;
+
+ dim[2] = size[2];
+ //only modify y size if new required size is larger than what we had.
+ if (yDataSize > size[1])
+ dim[1] = yDataSize;
+ else
+ dim[1] = size[1];
+ dim[0] = xPos + xDataSize;
+ try
+ {
+ //First be sure that we have enough space
+ dSet->extend(dim);
+
+ fSpace = dSet->getSpace();
+ fSpace.getSimpleExtentDims(dim);
+ size[0]=dim[0];
+ if (dimension > 1)
+ size[1]=dim[1];
+
+ //Create memory space
+ dim[0]=xDataSize;
+ dim[1]=yDataSize;
+ dim[2] = size[2];
+
+ DataSpace mSpace(dimension,dim);
+ //select where to write
+ offset[0]=xPos;
+ offset[1]=0;
+ offset[2]=0;
+
+ fSpace.selectHyperslab(H5S_SELECT_SET, dim, offset);
+
+ nativeType = HDF5FileBase::getNativeType(type);
+
+ dSet->write(data,nativeType,mSpace,fSpace);
+ xPos += xDataSize;
+ }
+ catch (DataSetIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (DataSpaceIException error)
+ {
+ PROCESS_ERROR;
+ }
+ return 0;
+}
+
+int HDF5RecordingData::prepareDataBlock(int xDataSize)
+{
+ hsize_t dim[3];
+ DataSpace fSpace;
+ if (dimension > 2) return -4; //We're not going to write rows in datasets bigger than 2d.
+
+ dim[2] = size[2];
+ dim[1] = size[1];
+ dim[0] = xPos + xDataSize;
+ try
+ {
+ dSet->extend(dim);
+
+ fSpace = dSet->getSpace();
+ fSpace.getSimpleExtentDims(dim);
+ size[0]=dim[0];
+ }
+ catch (DataSetIException error)
+ {
+ PROCESS_ERROR;
+ }
+ rowXPos = xPos;
+ rowDataSize = xDataSize;
+ xPos += xDataSize;
+ return 0;
+}
+
+int HDF5RecordingData::writeDataRow(int yPos, int xDataSize, HDF5FileBase::DataTypes type, void* data)
+{
+ hsize_t dim[2],offset[2];
+ DataSpace fSpace;
+ DataType nativeType;
+ if (dimension > 2) return -4; //We're not going to write rows in datasets bigger than 2d.
+ if (xDataSize != rowDataSize) return -2;
+ if ((yPos < 0) || (yPos >= size[1])) return -3;
+
+ try
+ {
+ dim[0] = xDataSize;
+ dim[1] = 1;
+ DataSpace mSpace(dimension,dim);
+
+ fSpace = dSet->getSpace();
+ offset[0] = rowXPos;
+ offset[1] = yPos;
+ fSpace.selectHyperslab(H5S_SELECT_SET, dim, offset);
+
+ nativeType = HDF5FileBase::getNativeType(type);
+
+
+ dSet->write(data,nativeType,mSpace,fSpace);
+ }
+ catch (DataSetIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (DataSpaceIException error)
+ {
+ PROCESS_ERROR;
+ }
+ catch (FileIException error)
+ {
+ PROCESS_ERROR;
+ }
+ return 0;
+}
+
+//KWD File
+
+KWDFile::KWDFile(int processorNumber, String basename) : HDF5FileBase()
+{
+ initFile(processorNumber, basename);
+}
+
+KWDFile::KWDFile() : HDF5FileBase()
+{
+}
+
+KWDFile::~KWDFile() {}
+
+String KWDFile::getFileName()
+{
+ return filename;
+}
+
+void KWDFile::initFile(int processorNumber, String basename)
+{
+ if (isOpen()) return;
+ filename = basename + "_" + String(processorNumber) + ".raw.kwd";
+ readyToOpen=true;
+}
+
+void KWDFile::startNewRecording(int recordingNumber, int nChannels, HDF5RecordingInfo* info)
+{
+ this->recordingNumber = recordingNumber;
+ this->nChannels = nChannels;
+
+ String recordPath = String("/recordings/")+String(recordingNumber);
+ CHECK_ERROR(createGroup(recordPath));
+ CHECK_ERROR(setAttributeStr(info->name,recordPath,String("name")));
+ CHECK_ERROR(setAttribute(U64,&(info->start_time),recordPath,String("start_time")));
+ // CHECK_ERROR(setAttribute(U32,&(info->start_sample),recordPath,String("start_sample")));
+ CHECK_ERROR(setAttribute(F32,&(info->sample_rate),recordPath,String("sample_rate")));
+ CHECK_ERROR(setAttribute(U32,&(info->bit_depth),recordPath,String("bit_depth")));
+ recdata = createDataSet(I16,0,nChannels,CHUNK_XSIZE,recordPath+"/data");
+ if (!recdata.get())
+ std::cerr << "Error creating data set" << std::endl;
+ curChan = nChannels;
+}
+
+void KWDFile::stopRecording()
+{
+ //ScopedPointer does the deletion and destructors the closings
+ recdata = nullptr;
+}
+
+int KWDFile::createFileStructure()
+{
+ const uint16 ver = 2;
+ if (createGroup("/recordings")) return -1;
+ if (setAttribute(U16,(void*)&ver,"/","kwik_version")) return -1;
+ return 0;
+}
+
+void KWDFile::writeBlockData(int16* data, int nSamples)
+{
+ CHECK_ERROR(recdata->writeDataBlock(nSamples,I16,data));
+}
+
+void KWDFile::writeRowData(int16* data, int nSamples)
+{
+ if (curChan >= nChannels)
+ {
+ CHECK_ERROR(recdata->prepareDataBlock(nSamples));
+ curChan=0;
+ }
+ CHECK_ERROR(recdata->writeDataRow(curChan,nSamples,I16,data));
+ curChan++;
+}
+
+//KWIK File
+
+KWIKFile::KWIKFile(String basename) : HDF5FileBase()
+{
+ initFile(basename);
+}
+
+KWIKFile::KWIKFile() : HDF5FileBase()
+{
+
+}
+
+KWIKFile::~KWIKFile() {}
+
+String KWIKFile::getFileName()
+{
+ return filename;
+}
+
+void KWIKFile::initFile(String basename)
+{
+ if (isOpen()) return;
+ filename = basename + ".kwik";
+ readyToOpen=true;
+}
+
+int KWIKFile::createFileStructure()
+{
+ const uint16 ver = 2;
+ if (createGroup("/recordings")) return -1;
+ if (createGroup("/event_types")) return -1;
+ for (int i=0; i < eventNames.size(); i++)
+ {
+ ScopedPointer<HDF5RecordingData> dSet;
+ String path = "/event_types/" + eventNames[i];
+ if (createGroup(path)) return -1;
+ path += "/events";
+ if (createGroup(path)) return -1;
+ dSet = createDataSet(U64,0,EVENT_CHUNK_SIZE,path + "/time_samples");
+ if (!dSet) return -1;
+ dSet = createDataSet(U16,0,EVENT_CHUNK_SIZE,path + "/recording");
+ if (!dSet) return -1;
+ path += "/user_data";
+ if (createGroup(path)) return -1;
+ dSet = createDataSet(U8,0,EVENT_CHUNK_SIZE,path + "/eventID");
+ if (!dSet) return -1;
+ dSet = createDataSet(U8,0,EVENT_CHUNK_SIZE,path + "/nodeID");
+ if (!dSet) return -1;
+ dSet = createDataSet(eventTypes[i],0,EVENT_CHUNK_SIZE,path + "/" + eventDataNames[i]);
+ if (!dSet) return -1;
+ }
+ if (setAttribute(U16,(void*)&ver,"/","kwik_version")) return -1;
+ return 0;
+}
+
+void KWIKFile::startNewRecording(int recordingNumber, HDF5RecordingInfo* info)
+{
+ this->recordingNumber = recordingNumber;
+ kwdIndex=0;
+ String recordPath = String("/recordings/")+String(recordingNumber);
+ CHECK_ERROR(createGroup(recordPath));
+ CHECK_ERROR(setAttributeStr(info->name,recordPath,String("name")));
+ CHECK_ERROR(setAttribute(U64,&(info->start_time),recordPath,String("start_time")));
+ // CHECK_ERROR(setAttribute(U32,&(info->start_sample),recordPath,String("start_sample")));
+ CHECK_ERROR(setAttribute(F32,&(info->sample_rate),recordPath,String("sample_rate")));
+ CHECK_ERROR(setAttribute(U32,&(info->bit_depth),recordPath,String("bit_depth")));
+ CHECK_ERROR(createGroup(recordPath + "/raw"));
+ CHECK_ERROR(createGroup(recordPath + "/raw/hdf5_paths"));
+
+ for (int i = 0; i < eventNames.size(); i++)
+ {
+ HDF5RecordingData* dSet;
+ String path = "/event_types/" + eventNames[i] + "/events";
+ dSet = getDataSet(path + "/time_samples");
+ if (!dSet)
+ std::cerr << "Error loading event timestamps dataset for type " << i << std::endl;
+ timeStamps.add(dSet);
+ dSet = getDataSet(path + "/recording");
+ if (!dSet)
+ std::cerr << "Error loading event recordings dataset for type " << i << std::endl;
+ recordings.add(dSet);
+ dSet = getDataSet(path + "/user_data/eventID");
+ if (!dSet)
+ std::cerr << "Error loading event ID dataset for type " << i << std::endl;
+ eventID.add(dSet);
+ dSet = getDataSet(path + "/user_data/nodeID");
+ if (!dSet)
+ std::cerr << "Error loading event node ID dataset for type " << i << std::endl;
+ nodeID.add(dSet);
+ dSet = getDataSet(path + "/user_data/" + eventDataNames[i]);
+ if (!dSet)
+ std::cerr << "Error loading event channel dataset for type " << i << std::endl;
+ eventData.add(dSet);
+ }
+}
+
+void KWIKFile::stopRecording()
+{
+ timeStamps.clear();
+ recordings.clear();
+ eventID.clear();
+ nodeID.clear();
+ eventData.clear();
+}
+
+void KWIKFile::writeEvent(int type, uint8 id, uint8 processor, void* data, uint64 timestamp)
+{
+ if (type > eventNames.size() || type < 0)
+ {
+ std::cerr << "HDF5::writeEvent Invalid event type " << type << std::endl;
+ return;
+ }
+ CHECK_ERROR(timeStamps[type]->writeDataBlock(1,U64,×tamp));
+ CHECK_ERROR(recordings[type]->writeDataBlock(1,I32,&recordingNumber));
+ CHECK_ERROR(eventID[type]->writeDataBlock(1,U8,&id));
+ CHECK_ERROR(nodeID[type]->writeDataBlock(1,U8,&processor));
+ CHECK_ERROR(eventData[type]->writeDataBlock(1,eventTypes[type],data));
+}
+
+void KWIKFile::addKwdFile(String filename)
+{
+ CHECK_ERROR(setAttributeStr(filename + "/recordings/" + String(recordingNumber),"/recordings/" + String(recordingNumber) +
+ "/raw/hdf5_paths",String(kwdIndex)));
+ kwdIndex++;
+}
+
+void KWIKFile::addEventType(String name, DataTypes type, String dataName)
+{
+ eventNames.add(name);
+ eventTypes.add(type);
+ eventDataNames.add(dataName);
+}
+
+//KWX File
+
+KWXFile::KWXFile(String basename) : HDF5FileBase()
+{
+ initFile(basename);
+ numElectrodes=0;
+ transformVector = new int16[MAX_TRANSFORM_SIZE];
+}
+
+KWXFile::KWXFile() : HDF5FileBase()
+{
+ numElectrodes=0;
+ transformVector = new int16[MAX_TRANSFORM_SIZE];
+}
+
+KWXFile::~KWXFile()
+{
+ delete transformVector;
+}
+
+String KWXFile::getFileName()
+{
+ return filename;
+}
+
+void KWXFile::initFile(String basename)
+{
+ if (isOpen()) return;
+ filename = basename + ".kwx";
+ readyToOpen=true;
+}
+
+int KWXFile::createFileStructure()
+{
+ const uint16 ver = 2;
+ if (createGroup("/channel_groups")) return -1;
+ if (setAttribute(U16,(void*)&ver,"/","kwik_version")) return -1;
+ for (int i=0; i < channelArray.size(); i++)
+ {
+ int res = createChannelGroup(i);
+ if (res) return -1;
+ }
+ return 0;
+}
+
+void KWXFile::addChannelGroup(int nChannels)
+{
+ channelArray.add(nChannels);
+ numElectrodes++;
+}
+
+int KWXFile::createChannelGroup(int index)
+{
+ ScopedPointer<HDF5RecordingData> dSet;
+ int nChannels = channelArray[index];
+ String path("/channel_groups/"+String(index));
+ CHECK_ERROR(createGroup(path));
+ dSet = createDataSet(I16,0,0,nChannels,SPIKE_CHUNK_XSIZE,SPIKE_CHUNK_YSIZE,path+"/waveforms_filtered");
+ if (!dSet) return -1;
+ dSet = createDataSet(U64,0,SPIKE_CHUNK_XSIZE,path+"/time_samples");
+ if (!dSet) return -1;
+ dSet = createDataSet(U16,0,SPIKE_CHUNK_XSIZE,path+"/recordings");
+ if (!dSet) return -1;
+ return 0;
+}
+
+void KWXFile::startNewRecording(int recordingNumber)
+{
+ HDF5RecordingData* dSet;
+ String path;
+ this->recordingNumber = recordingNumber;
+
+ for (int i=0; i < channelArray.size(); i++)
+ {
+ path = "/channel_groups/"+String(i);
+ dSet=getDataSet(path+"/waveforms_filtered");
+ if (!dSet)
+ std::cerr << "Error loading spikes dataset for group " << i << std::endl;
+ spikeArray.add(dSet);
+ dSet=getDataSet(path+"/time_samples");
+ if (!dSet)
+ std::cerr << "Error loading spike timestamp dataset for group " << i << std::endl;
+ timeStamps.add(dSet);
+ dSet=getDataSet(path+"/recordings");
+ if (!dSet)
+ std::cerr << "Error loading spike recordings dataset for group " << i << std::endl;
+ recordingArray.add(dSet);
+ }
+}
+
+void KWXFile::stopRecording()
+{
+ spikeArray.clear();
+ timeStamps.clear();
+ recordingArray.clear();
+}
+
+void KWXFile::resetChannels()
+{
+ stopRecording(); //Just in case
+ channelArray.clear();
+}
+
+void KWXFile::writeSpike(int groupIndex, int nSamples, const uint16* data, uint64 timestamp)
+{
+ if ((groupIndex < 0) || (groupIndex >= numElectrodes))
+ {
+ std::cerr << "HDF5::writeSpike Electrode index out of bounds " << groupIndex << std::endl;
+ return;
+ }
+ int nChans= channelArray[groupIndex];
+ int16* dst=transformVector;
+
+ //Given the way we store spike data, we need to transpose it to store in
+ //N x NSAMPLES x NCHANNELS as well as convert from u16 to i16
+ for (int i = 0; i < nSamples; i++)
+ {
+ for (int j = 0; j < nChans; j++)
+ {
+ *(dst++) = *(data+j*nSamples+i)-32768;
+ }
+ }
+
+ CHECK_ERROR(spikeArray[groupIndex]->writeDataBlock(1,nSamples,I16,transformVector));
+ CHECK_ERROR(recordingArray[groupIndex]->writeDataBlock(1,I32,&recordingNumber));
+ CHECK_ERROR(timeStamps[groupIndex]->writeDataBlock(1,U64,×tamp));
+}
diff --git a/Source/Processors/RecordNode/HDF5FileFormat.h b/Source/Processors/RecordNode/HDF5FileFormat.h
new file mode 100644
index 0000000000000000000000000000000000000000..1fc8e675fb5d9c5d9dae130ec4fc0317e5f14f86
--- /dev/null
+++ b/Source/Processors/RecordNode/HDF5FileFormat.h
@@ -0,0 +1,203 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#ifndef HDF5FILEFORMAT_H_INCLUDED
+#define HDF5FILEFORMAT_H_INCLUDED
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+
+class HDF5RecordingData;
+namespace H5
+{
+class DataSet;
+class H5File;
+class DataType;
+}
+
+struct HDF5RecordingInfo
+{
+ String name;
+ int64 start_time;
+ uint32 start_sample;
+ float sample_rate;
+ uint32 bit_depth;
+};
+
+class HDF5FileBase
+{
+public:
+ HDF5FileBase();
+ virtual ~HDF5FileBase();
+
+ int open();
+ void close();
+ virtual String getFileName() = 0;
+ bool isOpen() const;
+ typedef enum DataTypes { U8, U16, U32, U64, I8, I16, I32, I64, F32, STR} DataTypes;
+
+ static H5::DataType getNativeType(DataTypes type);
+ static H5::DataType getH5Type(DataTypes type);
+
+protected:
+
+ virtual int createFileStructure() = 0;
+
+ int setAttribute(DataTypes type, void* data, String path, String name);
+ int setAttributeStr(String value, String path, String name);
+ int createGroup(String path);
+
+ HDF5RecordingData* getDataSet(String path);
+
+ //aliases for createDataSet
+ HDF5RecordingData* createDataSet(DataTypes type, int sizeX, int chunkX, String path);
+ HDF5RecordingData* createDataSet(DataTypes type, int sizeX, int sizeY, int chunkX, String path);
+ HDF5RecordingData* createDataSet(DataTypes type, int sizeX, int sizeY, int sizeZ, int chunkX, String path);
+ HDF5RecordingData* createDataSet(DataTypes type, int sizeX, int sizeY, int sizeZ, int chunkX, int chunkY, String path);
+
+ bool readyToOpen;
+
+private:
+ //create an extendable dataset
+ HDF5RecordingData* createDataSet(DataTypes type, int dimension, int* size, int* chunking, String path);
+ int open(bool newfile);
+ ScopedPointer<H5::H5File> file;
+ bool opened;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(HDF5FileBase);
+};
+
+class HDF5RecordingData
+{
+public:
+ HDF5RecordingData(H5::DataSet* data);
+ ~HDF5RecordingData();
+
+ int writeDataBlock(int xDataSize, HDF5FileBase::DataTypes type, void* data);
+ int writeDataBlock(int xDataSize, int yDataSize, HDF5FileBase::DataTypes type, void* data);
+
+ int prepareDataBlock(int xDataSize);
+ int writeDataRow(int yPos, int xDataSize, HDF5FileBase::DataTypes type, void* data);
+
+private:
+ int xPos;
+ int xChunkSize;
+ int size[3];
+ int dimension;
+ int rowXPos;
+ int rowDataSize;
+ ScopedPointer<H5::DataSet> dSet;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(HDF5RecordingData);
+};
+
+class KWDFile : public HDF5FileBase
+{
+public:
+ KWDFile(int processorNumber, String basename);
+ KWDFile();
+ virtual ~KWDFile();
+ void initFile(int processorNumber, String basename);
+ void startNewRecording(int recordingNumber, int nChannels, HDF5RecordingInfo* info);
+ void stopRecording();
+ void writeBlockData(int16* data, int nSamples);
+ void writeRowData(int16* data, int nSamples);
+ String getFileName();
+
+protected:
+ int createFileStructure();
+
+private:
+ int recordingNumber;
+ int nChannels;
+ int curChan;
+ String filename;
+ ScopedPointer<HDF5RecordingData> recdata;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(KWDFile);
+};
+
+class KWIKFile : public HDF5FileBase
+{
+public:
+ KWIKFile(String basename);
+ KWIKFile();
+ virtual ~KWIKFile();
+ void initFile(String basename);
+ void startNewRecording(int recordingNumber, HDF5RecordingInfo* info);
+ void stopRecording();
+ void writeEvent(int type, uint8 id, uint8 processor, void* data, uint64 timestamp);
+ void addKwdFile(String filename);
+ void addEventType(String name, DataTypes type, String dataName);
+ String getFileName();
+
+protected:
+ int createFileStructure();
+
+private:
+ int recordingNumber;
+ String filename;
+ OwnedArray<HDF5RecordingData> timeStamps;
+ OwnedArray<HDF5RecordingData> recordings;
+ OwnedArray<HDF5RecordingData> eventID;
+ OwnedArray<HDF5RecordingData> nodeID;
+ OwnedArray<HDF5RecordingData> eventData;
+ Array<String> eventNames;
+ Array<DataTypes> eventTypes;
+ Array<String> eventDataNames;
+ int kwdIndex;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(KWIKFile);
+};
+
+class KWXFile : public HDF5FileBase
+{
+public:
+ KWXFile(String basename);
+ KWXFile();
+ virtual ~KWXFile();
+ void initFile(String basename);
+ void startNewRecording(int recordingNumber);
+ void stopRecording();
+ void addChannelGroup(int nChannels);
+ void resetChannels();
+ void writeSpike(int groupIndex, int nSamples, const uint16* data, uint64 timestamp);
+ String getFileName();
+
+protected:
+ int createFileStructure();
+
+private:
+ int createChannelGroup(int index);
+ int recordingNumber;
+ String filename;
+ OwnedArray<HDF5RecordingData> spikeArray;
+ OwnedArray<HDF5RecordingData> recordingArray;
+ OwnedArray<HDF5RecordingData> timeStamps;
+ Array<int> channelArray;
+ int numElectrodes;
+ int16* transformVector;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(KWXFile);
+};
+
+#endif // HDF5FILEFORMAT_H_INCLUDED
diff --git a/Source/Processors/RecordNode/HDF5Recording.cpp b/Source/Processors/RecordNode/HDF5Recording.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..31ad28329d580eeb6cdf83c24ed47717b1052b72
--- /dev/null
+++ b/Source/Processors/RecordNode/HDF5Recording.cpp
@@ -0,0 +1,184 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#include "HDF5Recording.h"
+#define MAX_BUFFER_SIZE 10000
+
+HDF5Recording::HDF5Recording() : processorIndex(-1)
+{
+ timestamp = 0;
+ scaledBuffer = new float[MAX_BUFFER_SIZE];
+ intBuffer = new int16[MAX_BUFFER_SIZE];
+}
+
+HDF5Recording::~HDF5Recording()
+{
+ delete scaledBuffer;
+ delete intBuffer;
+}
+
+String HDF5Recording::getEngineID()
+{
+ return "KWIK";
+}
+
+void HDF5Recording::updateTimeStamp(int64 timestamp)
+{
+ this->timestamp = timestamp;
+}
+
+void HDF5Recording::registerProcessor(GenericProcessor* proc)
+{
+ HDF5RecordingInfo* info = new HDF5RecordingInfo();
+ info->sample_rate = proc->getSampleRate();
+ info->bit_depth = 16;
+ infoArray.add(info);
+ fileArray.add(new KWDFile());
+ activeChannelCount.add(0);
+ processorIndex++;
+}
+
+void HDF5Recording::resetChannels()
+{
+ processorIndex = -1;
+ fileArray.clear();
+ activeChannelCount.clear();
+ processorMap.clear();
+ infoArray.clear();
+ if (spikesFile)
+ spikesFile->resetChannels();
+}
+
+void HDF5Recording::addChannel(int index, Channel* chan)
+{
+ processorMap.add(processorIndex);
+}
+
+void HDF5Recording::openFiles(File rootFolder, int experimentNumber, int recordingNumber)
+{
+ String basepath = rootFolder.getFullPathName() + rootFolder.separatorString + "experiment" + String(experimentNumber);
+ //KWIK file
+ mainFile->initFile(basepath);
+ mainFile->open();
+
+ //KWX file
+ spikesFile->initFile(basepath);
+ spikesFile->open();
+ spikesFile->startNewRecording(recordingNumber);
+
+ //Let's just put the first processor (usually the source node) on the KWIK for now
+ infoArray[0]->name = String("Open-Ephys Recording #") + String(recordingNumber);
+ infoArray[0]->start_time = timestamp;
+ infoArray[0]->start_sample = 0;
+ mainFile->startNewRecording(recordingNumber,infoArray[0]);
+
+ //KWD files
+ for (int i = 0; i < processorMap.size(); i++)
+ {
+ int index = processorMap[i];
+ if (getChannel(i)->getRecordState())
+ {
+ if (!fileArray[index]->isOpen())
+ {
+ fileArray[index]->initFile(getChannel(i)->nodeId,basepath);
+ fileArray[index]->open();
+ }
+ activeChannelCount.set(index,activeChannelCount[index]+1);
+ }
+ }
+ for (int i = 0; i < fileArray.size(); i++)
+ {
+ if (fileArray[i]->isOpen())
+ {
+ File f(fileArray[i]->getFileName());
+ mainFile->addKwdFile(f.getFileName());
+
+ infoArray[i]->name = String("Open-Ephys Recording #") + String(recordingNumber);
+ infoArray[i]->start_time = timestamp;
+ infoArray[i]->start_sample = 0;
+ fileArray[i]->startNewRecording(recordingNumber,activeChannelCount[i],infoArray[i]);
+ }
+ }
+}
+
+void HDF5Recording::closeFiles()
+{
+ mainFile->stopRecording();
+ mainFile->close();
+ spikesFile->stopRecording();
+ spikesFile->close();
+ for (int i = 0; i < fileArray.size(); i++)
+ {
+ fileArray[i]->stopRecording();
+ fileArray[i]->close();
+ activeChannelCount.set(i,0);
+ }
+}
+
+void HDF5Recording::writeData(AudioSampleBuffer& buffer, int nSamples)
+{
+ int index;
+ for (int i = 0; i < buffer.getNumChannels(); i++)
+ {
+ if (getChannel(i)->getRecordState())
+ {
+ double multFactor = 1/(float(0x7fff) * getChannel(i)->bitVolts);
+ int index = processorMap[getChannel(i)->recordIndex];
+ FloatVectorOperations::copyWithMultiply(scaledBuffer,buffer.getReadPointer(i,0),multFactor,nSamples);
+ AudioDataConverters::convertFloatToInt16LE(scaledBuffer,intBuffer,nSamples);
+ fileArray[index]->writeRowData(intBuffer,nSamples);
+ }
+ }
+}
+
+void HDF5Recording::writeEvent(int eventType, MidiMessage& event, int samplePosition)
+{
+ const uint8* dataptr = event.getRawData();
+ if (eventType == GenericProcessor::TTL)
+ mainFile->writeEvent(0,*(dataptr+2),*(dataptr+1),(void*)(dataptr+3),timestamp+samplePosition);
+ else if (eventType == GenericProcessor::MESSAGE)
+ mainFile->writeEvent(1,*(dataptr+2),*(dataptr+1),(void*)(dataptr+4),timestamp+samplePosition);
+}
+
+void HDF5Recording::addSpikeElectrode(int index, SpikeRecordInfo* elec)
+{
+ spikesFile->addChannelGroup(elec->numChannels);
+}
+void HDF5Recording::writeSpike(const SpikeObject& spike, int electrodeIndex)
+{
+ spikesFile->writeSpike(electrodeIndex,spike.nSamples,spike.data,spike.timestamp);
+}
+
+void HDF5Recording::startAcquisition()
+{
+ mainFile = new KWIKFile();
+ mainFile->addEventType("TTL",HDF5FileBase::U8,"event_channels");
+ mainFile->addEventType("Messages",HDF5FileBase::STR,"Text");
+ spikesFile = new KWXFile();
+}
+
+RecordEngineManager* HDF5Recording::getEngineManager()
+{
+ RecordEngineManager* man = new RecordEngineManager("KWIK","Kwik",nullptr);
+ return man;
+}
\ No newline at end of file
diff --git a/Source/Processors/RecordNode/HDF5Recording.h b/Source/Processors/RecordNode/HDF5Recording.h
new file mode 100644
index 0000000000000000000000000000000000000000..50a2657348bbac75fcdec3f8f1a21924b932fffc
--- /dev/null
+++ b/Source/Processors/RecordNode/HDF5Recording.h
@@ -0,0 +1,67 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#ifndef HDF5RECORDING_H_INCLUDED
+#define HDF5RECORDING_H_INCLUDED
+
+#include "RecordEngine.h"
+#include "HDF5FileFormat.h"
+
+class HDF5Recording : public RecordEngine
+{
+public:
+ HDF5Recording();
+ ~HDF5Recording();
+ String getEngineID();
+ void openFiles(File rootFolder, int experimentNumber, int recordingNumber);
+ void closeFiles();
+ void writeData(AudioSampleBuffer& buffer, int nSamples);
+ void writeEvent(int eventType, MidiMessage& event, int samplePosition);
+ void addChannel(int index, Channel* chan);
+ void addSpikeElectrode(int index, SpikeRecordInfo* elec);
+ void writeSpike(const SpikeObject& spike, int electrodeIndex);
+ void registerProcessor(GenericProcessor* processor);
+ void resetChannels();
+ void updateTimeStamp(int64 timestamp);
+ void startAcquisition();
+
+ static RecordEngineManager* getEngineManager();
+private:
+
+ int processorIndex;
+
+ Array<int> processorMap;
+ Array<int> activeChannelCount;
+ OwnedArray<KWDFile> fileArray;
+ OwnedArray<HDF5RecordingInfo> infoArray;
+ ScopedPointer<KWIKFile> mainFile;
+ ScopedPointer<KWXFile> spikesFile;
+ float* scaledBuffer;
+ int16* intBuffer;
+ int64 timestamp;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(HDF5Recording);
+};
+
+
+#endif // HDF5RECORDING_H_INCLUDED
diff --git a/Source/Processors/RecordNode/OriginalRecording.cpp b/Source/Processors/RecordNode/OriginalRecording.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..9ef5d8762f0d08a8efd51d007625412f10e2ce8d
--- /dev/null
+++ b/Source/Processors/RecordNode/OriginalRecording.cpp
@@ -0,0 +1,634 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2013 Florian Franzen
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "OriginalRecording.h"
+#include "../../Audio/AudioComponent.h"
+
+OriginalRecording::OriginalRecording() : separateFiles(false),
+ blockIndex(0), recordingNumber(0), experimentNumber(0), zeroBuffer(1, 50000), eventFile(nullptr), messageFile(nullptr)
+{
+ continuousDataIntegerBuffer = new int16[10000];
+ continuousDataFloatBuffer = new float[10000];
+
+ recordMarker = new char[10];
+ for (int i = 0; i < 9; i++)
+ {
+ recordMarker[i] = i;
+ }
+ recordMarker[9] = 255;
+
+ zeroBuffer.clear();
+}
+
+OriginalRecording::~OriginalRecording()
+{
+ //Cleanup just in case
+ for (int i=0; i < fileArray.size(); i++)
+ {
+ if (fileArray[i] != nullptr) fclose(fileArray[i]);
+ }
+ for (int i=0; i < spikeFileArray.size(); i++)
+ {
+ if (spikeFileArray[i] != nullptr) fclose(spikeFileArray[i]);
+ }
+ delete continuousDataFloatBuffer;
+ delete continuousDataIntegerBuffer;
+ delete recordMarker;
+}
+
+String OriginalRecording::getEngineID()
+{
+ return "OPENEPHYS";
+}
+
+void OriginalRecording::addChannel(int index, Channel* chan)
+{
+ //Just populate the file array with null so we can address it by index afterwards
+ fileArray.add(nullptr);
+}
+
+void OriginalRecording::addSpikeElectrode(int index, SpikeRecordInfo* elec)
+{
+ spikeFileArray.add(nullptr);
+}
+
+void OriginalRecording::resetChannels()
+{
+ fileArray.clear();
+ spikeFileArray.clear();
+}
+
+void OriginalRecording::openFiles(File rootFolder, int experimentNumber, int recordingNumber)
+{
+ this->recordingNumber = recordingNumber;
+ this->experimentNumber = experimentNumber;
+ openFile(rootFolder,nullptr);
+ openMessageFile(rootFolder);
+ for (int i = 0; i < fileArray.size(); i++)
+ {
+ if (getChannel(i)->getRecordState())
+ {
+ openFile(rootFolder,getChannel(i));
+ }
+ }
+ for (int i = 0; i < spikeFileArray.size(); i++)
+ {
+ openSpikeFile(rootFolder,getSpikeElectrode(i));
+ }
+ blockIndex = 0;
+}
+
+void OriginalRecording::openFile(File rootFolder, Channel* ch)
+{
+ FILE* chFile;
+ bool isEvent;
+ String fullPath(rootFolder.getFullPathName() + rootFolder.separatorString);
+
+ std::cout << "OPENING FILE: " << fullPath << std::endl;
+
+ isEvent = (ch == nullptr) ? true : false;
+ if (isEvent)
+ {
+ if (experimentNumber > 1)
+ fullPath += "all_channels_" + String(experimentNumber) + ".events";
+ else
+ fullPath += "all_channels.events";
+ }
+ else
+ {
+ fullPath += getFileName(ch);
+ }
+
+ File f = File(fullPath);
+
+ bool fileExists = f.exists();
+
+ diskWriteLock.enter();
+
+ chFile = fopen(fullPath.toUTF8(), "ab");
+
+ if (!fileExists)
+ {
+ // create and write header
+ std::cout << "Writing header." << std::endl;
+ String header = generateHeader(ch);
+ //std::cout << header << std::endl;
+ std::cout << "File ID: " << chFile << ", number of bytes: " << header.getNumBytesAsUTF8() << std::endl;
+
+
+ fwrite(header.toUTF8(), 1, header.getNumBytesAsUTF8(), chFile);
+
+ std::cout << "Wrote header." << std::endl;
+
+ std::cout << "Block index: " << blockIndex << std::endl;
+
+ }
+ else
+ {
+ std::cout << "File already exists, just opening." << std::endl;
+ }
+
+ diskWriteLock.exit();
+
+ if (isEvent)
+ eventFile = chFile;
+ else
+ fileArray.set(ch->recordIndex,chFile);
+
+}
+
+void OriginalRecording::openSpikeFile(File rootFolder, SpikeRecordInfo* elec)
+{
+
+ FILE* spFile;
+ String fullPath(rootFolder.getFullPathName() + rootFolder.separatorString);
+ fullPath += elec->name.removeCharacters(" ");
+
+ if (experimentNumber > 1)
+ {
+ fullPath += "_" + String(experimentNumber);
+ }
+
+ fullPath += ".spikes";
+
+ std::cout << "OPENING FILE: " << fullPath << std::endl;
+
+ File f = File(fullPath);
+
+ bool fileExists = f.exists();
+
+ diskWriteLock.enter();
+
+ spFile = fopen(fullPath.toUTF8(),"ab");
+
+ if (!fileExists)
+ {
+ String header = generateSpikeHeader(elec);
+ fwrite(header.toUTF8(), 1, header.getNumBytesAsUTF8(), spFile);
+ }
+ diskWriteLock.exit();
+ spikeFileArray.set(elec->recordIndex,spFile);
+
+}
+
+void OriginalRecording::openMessageFile(File rootFolder)
+{
+ FILE* mFile;
+ String fullPath(rootFolder.getFullPathName() + rootFolder.separatorString);
+ fullPath += "messages.events";
+
+ std::cout << "OPENING FILE: " << fullPath << std::endl;
+
+ File f = File(fullPath);
+
+ bool fileExists = f.exists();
+
+ diskWriteLock.enter();
+
+ mFile = fopen(fullPath.toUTF8(),"ab");
+
+ //If this file needs a header, it goes here
+
+ diskWriteLock.exit();
+ messageFile = mFile;
+
+}
+
+String OriginalRecording::getFileName(Channel* ch)
+{
+ String filename;
+
+ filename += ch->nodeId;
+ filename += "_";
+ filename += ch->name;
+
+ if (experimentNumber > 1)
+ {
+ filename += "_" + String(experimentNumber);
+ }
+
+ if (separateFiles)
+ {
+ filename += "_";
+ filename += recordingNumber;
+ }
+ filename += ".continuous";
+
+ return filename;
+}
+
+String OriginalRecording::generateHeader(Channel* ch)
+{
+
+ String header = "header.format = 'Open Ephys Data Format'; \n";
+
+ header += "header.version = 0.4; \n";
+ header += "header.header_bytes = ";
+ header += String(HEADER_SIZE);
+ header += ";\n";
+
+ if (ch == nullptr)
+ {
+ header += "header.description = 'each record contains one 64-bit timestamp, one 16-bit sample position, one uint8 event type, one uint8 processor ID, one uint8 event ID, one uint8 event channel, and one uint16 recordingNumber'; \n";
+
+ }
+ else
+ {
+ header += "header.description = 'each record contains one 64-bit timestamp, one 16-bit sample count (N), 1 uint16 recordingNumber, N 16-bit samples, and one 10-byte record marker (0 1 2 3 4 5 6 7 8 255)'; \n";
+ }
+
+
+ header += "header.date_created = '";
+ header += generateDateString();
+ header += "';\n";
+
+ header += "header.channel = '";
+ header += (ch != nullptr) ? ch->name : "Events";
+ header += "';\n";
+
+ if (ch == nullptr)
+ {
+
+ header += "header.channelType = 'Event';\n";
+ }
+ else
+ {
+ header += "header.channelType = 'Continuous';\n";
+ }
+
+ header += "header.sampleRate = ";
+ // all channels need to have the same sample rate under the current scheme
+ header += String(getChannel(0)->sampleRate);
+ header += ";\n";
+ header += "header.blockLength = ";
+ header += BLOCK_LENGTH;
+ header += ";\n";
+ header += "header.bufferSize = ";
+ header += getAudioComponent()->getBufferSize();
+ header += ";\n";
+ header += "header.bitVolts = ";
+ header += (ch != nullptr) ? String(ch->bitVolts) : "1";
+ header += ";\n";
+
+ header = header.paddedRight(' ', HEADER_SIZE);
+
+ //std::cout << header << std::endl;
+
+ return header;
+
+}
+
+String OriginalRecording::generateSpikeHeader(SpikeRecordInfo* elec)
+{
+ String header = "header.format = 'Open Ephys Data Format'; \n";
+ header += "header.version = 0.4; \n";
+ header += "header.header_bytes = ";
+ header += String(HEADER_SIZE);
+ header += ";\n";
+
+ header += "header.description = 'Each record contains 1 uint8 eventType, 1 uint64 timestamp, 1 uint16 electrodeID, 1 uint16 numChannels (n), 1 uint16 numSamples (m), n*m uint16 samples, n uint16 channelGains, n uint16 thresholds, and 1 uint16 recordingNumber'; \n";
+
+ header += "header.date_created = '";
+ header += generateDateString();
+ header += "';\n";
+
+ header += "header.electrode = '";
+ header += elec->name;
+ header += "';\n";
+
+ header += "header.num_channels = ";
+ header += elec->numChannels;
+ header += ";\n";
+
+ header += "header.sampleRate = ";
+ header += String(elec->sampleRate);
+ header += ";\n";
+
+ header = header.paddedRight(' ', HEADER_SIZE);
+
+ //std::cout << header << std::endl;
+
+ return header;
+}
+
+void OriginalRecording::writeEvent(int eventType, MidiMessage& event, int samplePosition)
+{
+ if (eventType == GenericProcessor::TTL)
+ writeTTLEvent(event,samplePosition);
+ else if (eventType == GenericProcessor::MESSAGE)
+ writeMessage(event,samplePosition);
+}
+
+void OriginalRecording::writeMessage(MidiMessage& event, int samplePosition)
+{
+ if (messageFile == nullptr)
+ return;
+ uint64 samplePos = (uint64) samplePosition;
+
+ int64 eventTimestamp = timestamp + samplePos;
+
+ int msgLength = event.getRawDataSize() - 5;
+ const char* dataptr = (const char*)event.getRawData() + 4;
+
+ String timestampText(eventTimestamp);
+
+ diskWriteLock.enter();
+ fwrite(timestampText.toUTF8(),1,timestampText.length(),messageFile);
+ fwrite(" ",1,1,messageFile);
+ fwrite(dataptr,1,msgLength,messageFile);
+ fwrite("\n",1,1,messageFile);
+ diskWriteLock.exit();
+
+}
+
+void OriginalRecording::writeTTLEvent(MidiMessage& event, int samplePosition)
+{
+ // find file and write samples to disk
+ // std::cout << "Received event!" << std::endl;
+
+ if (eventFile == nullptr)
+ return;
+
+ const uint8* dataptr = event.getRawData();
+
+ uint64 samplePos = (uint64) samplePosition;
+
+ int64 eventTimestamp = timestamp + samplePos; // add the sample position to the buffer timestamp
+
+ diskWriteLock.enter();
+
+ fwrite(&eventTimestamp, // ptr
+ 8, // size of each element
+ 1, // count
+ eventFile); // ptr to FILE object
+
+ fwrite(&samplePos, // ptr
+ 2, // size of each element
+ 1, // count
+ eventFile); // ptr to FILE object
+
+ // write 1st four bytes of event (type, nodeId, eventId, eventChannel)
+ fwrite(dataptr, 1, 4, eventFile);
+
+ // write recording number
+ fwrite(&recordingNumber, // ptr
+ 2, // size of each element
+ 1, // count
+ eventFile); // ptr to FILE object
+
+ diskWriteLock.exit();
+}
+
+void OriginalRecording::writeData(AudioSampleBuffer& buffer, int nSamples)
+{
+ int samplesWritten = 0;
+
+ while (samplesWritten < nSamples) // there are still unwritten samples in the buffer
+ {
+
+ int numSamplesToWrite = nSamples - samplesWritten; // samples remaining in the buffer
+
+ if (blockIndex + numSamplesToWrite < BLOCK_LENGTH) // we still have space in this block
+ {
+ for (int i = 0; i < buffer.getNumChannels(); i++)
+ {
+
+ if (getChannel(i)->getRecordState())
+ {
+ // write buffer to disk!
+ writeContinuousBuffer(buffer.getReadPointer(i,samplesWritten),
+ numSamplesToWrite,
+ i);
+
+
+ }
+ }
+
+ // update our variables
+ samplesWritten += numSamplesToWrite;
+ timestamp += numSamplesToWrite;
+ blockIndex += numSamplesToWrite;
+
+ }
+ else // there's not enough space left in this block for all remaining samples
+ {
+
+ numSamplesToWrite = BLOCK_LENGTH - blockIndex;
+
+ for (int i = 0; i < buffer.getNumChannels(); i++)
+ {
+
+ if (getChannel(i)->getRecordState())
+ {
+ // write buffer to disk!
+ writeContinuousBuffer(buffer.getReadPointer(i,samplesWritten),
+ numSamplesToWrite,
+ i);
+
+ //std::cout << "Record channel " << i << std::endl;
+ }
+ }
+
+ // update our variables
+ samplesWritten += numSamplesToWrite;
+ timestamp += numSamplesToWrite;
+ blockIndex = 0; // back to the beginning of the block
+
+ }
+ }
+}
+
+void OriginalRecording::writeContinuousBuffer(const float* data, int nSamples, int channel)
+{
+ // check to see if the file exists
+ if (fileArray[channel] == nullptr)
+ return;
+
+ // scale the data back into the range of int16
+ float scaleFactor = float(0x7fff) * getChannel(channel)->bitVolts;
+ for (int n = 0; n < nSamples; n++)
+ {
+ *(continuousDataFloatBuffer+n) = *(data+n) / scaleFactor;
+ }
+ AudioDataConverters::convertFloatToInt16BE(continuousDataFloatBuffer, continuousDataIntegerBuffer, nSamples);
+
+ if (blockIndex == 0)
+ {
+ writeTimestampAndSampleCount(fileArray[channel]);
+ }
+
+ diskWriteLock.enter();
+
+ size_t count = fwrite(continuousDataIntegerBuffer, // ptr
+ 2, // size of each element
+ nSamples, // count
+ fileArray[channel]); // ptr to FILE object
+
+ jassert(count == nSamples); // make sure all the data was written
+
+ diskWriteLock.exit();
+
+ if (blockIndex + nSamples == BLOCK_LENGTH)
+ {
+ writeRecordMarker(fileArray[channel]);
+ }
+}
+
+void OriginalRecording::writeTimestampAndSampleCount(FILE* file)
+{
+ diskWriteLock.enter();
+
+ uint16 samps = BLOCK_LENGTH;
+
+ fwrite(×tamp, // ptr
+ 8, // size of each element
+ 1, // count
+ file); // ptr to FILE object
+
+ fwrite(&samps, // ptr
+ 2, // size of each element
+ 1, // count
+ file); // ptr to FILE object
+
+ fwrite(&recordingNumber, // ptr
+ 2, // size of each element
+ 1, // count
+ file); // ptr to FILE object
+
+ diskWriteLock.exit();
+}
+
+void OriginalRecording::writeRecordMarker(FILE* file)
+{
+ // write a 10-byte marker indicating the end of a record
+
+ diskWriteLock.enter();
+ fwrite(recordMarker, // ptr
+ 1, // size of each element
+ 10, // count
+ file); // ptr to FILE object
+
+ diskWriteLock.exit();
+}
+
+void OriginalRecording::closeFiles()
+{
+ for (int i = 0; i < fileArray.size(); i++)
+ {
+ if (fileArray[i] != nullptr)
+ {
+ if (blockIndex < BLOCK_LENGTH)
+ {
+ // fill out the rest of the current buffer
+ writeContinuousBuffer(zeroBuffer.getReadPointer(0), BLOCK_LENGTH - blockIndex, i);
+ diskWriteLock.enter();
+ fclose(fileArray[i]);
+ fileArray.set(i,nullptr);
+ diskWriteLock.exit();
+ }
+ }
+ }
+ for (int i = 0; i < spikeFileArray.size(); i++)
+ {
+ if (spikeFileArray[i] != nullptr)
+ {
+ diskWriteLock.enter();
+ fclose(spikeFileArray[i]);
+ spikeFileArray.set(i,nullptr);
+ diskWriteLock.exit();
+ }
+ }
+ if (eventFile != nullptr)
+ {
+ diskWriteLock.enter();
+ fclose(eventFile);
+ eventFile = nullptr;
+ diskWriteLock.exit();
+ }
+ if (messageFile != nullptr)
+ {
+ diskWriteLock.enter();
+ fclose(messageFile);
+ messageFile = nullptr;
+ diskWriteLock.exit();
+ }
+ blockIndex = 0;
+}
+
+void OriginalRecording::updateTimeStamp(int64 timestamp)
+{
+ this->timestamp = timestamp;
+}
+
+void OriginalRecording::writeSpike(const SpikeObject& spike, int electrodeIndex)
+{
+ uint8_t spikeBuffer[MAX_SPIKE_BUFFER_LEN];
+
+ if (spikeFileArray[electrodeIndex] == nullptr)
+ return;
+
+ packSpike(&spike, spikeBuffer, MAX_SPIKE_BUFFER_LEN);
+
+ int totalBytes = spike.nSamples * spike.nChannels * 2 + // account for samples
+ spike.nChannels * 4 + // acount for gain
+ spike.nChannels * 2 + // account for thresholds
+ SPIKE_METADATA_SIZE; // 42, from SpikeObject.h
+
+
+ // format:
+ // 1 byte of event type (always = 4 for spikes)
+ // 8 bytes for 64-bit timestamp
+ // 2 bytes for 16-bit electrode ID
+ // 2 bytes for 16-bit number of channels (n)
+ // 2 bytes for 16-bit number of samples (m)
+ // 2*n*m bytes for 16-bit samples
+ // 2*n bytes for 16-bit gains
+ // 2*n bytes for 16-bit thresholds
+
+ // const MessageManagerLock mmLock;
+
+ diskWriteLock.enter();
+
+ fwrite(spikeBuffer, 1, totalBytes, spikeFileArray[electrodeIndex]);
+
+ fwrite(&recordingNumber, // ptr
+ 2, // size of each element
+ 1, // count
+ spikeFileArray[electrodeIndex]); // ptr to FILE object
+
+ diskWriteLock.exit();
+}
+
+void OriginalRecording::setParameter(EngineParameter& parameter)
+{
+ boolParameter(0, separateFiles);
+}
+
+RecordEngineManager* OriginalRecording::getEngineManager()
+{
+ RecordEngineManager* man = new RecordEngineManager("OPENEPHYS","Open Ephys",nullptr);
+ EngineParameter* param;
+ param = new EngineParameter(EngineParameter::BOOL,0,"Separate Files",false);
+ man->addParameter(param);
+ return man;
+}
\ No newline at end of file
diff --git a/Source/Processors/RecordNode/OriginalRecording.h b/Source/Processors/RecordNode/OriginalRecording.h
new file mode 100644
index 0000000000000000000000000000000000000000..97c63b915b5fe172dc6f287db16408dfbb01c8c5
--- /dev/null
+++ b/Source/Processors/RecordNode/OriginalRecording.h
@@ -0,0 +1,100 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#ifndef ORIGINALRECORDING_H_INCLUDED
+#define ORIGINALRECORDING_H_INCLUDED
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+
+#include "RecordEngine.h"
+#include <stdio.h>
+
+#define HEADER_SIZE 1024
+#define BLOCK_LENGTH 1024
+
+class OriginalRecording : public RecordEngine
+{
+public:
+ OriginalRecording();
+ ~OriginalRecording();
+
+ void setParameter(EngineParameter& parameter);
+ String getEngineID();
+ void openFiles(File rootFolder, int experimentNumber, int recordingNumber);
+ void closeFiles();
+ void writeData(AudioSampleBuffer& buffer, int nSamples);
+ void writeEvent(int eventType, MidiMessage& event, int samplePosition);
+ void addChannel(int index, Channel* chan);
+ void resetChannels();
+ void updateTimeStamp(int64 timestamp);
+ void addSpikeElectrode(int index, SpikeRecordInfo* elec);
+ void writeSpike(const SpikeObject& spike, int electrodeIndex);
+
+ static RecordEngineManager* getEngineManager();
+
+private:
+ String getFileName(Channel* ch);
+ void openFile(File rootFolder, Channel* ch);
+ String generateHeader(Channel* ch);
+ void writeContinuousBuffer(const float* data, int nSamples, int channel);
+ void writeTimestampAndSampleCount(FILE* file);
+ void writeRecordMarker(FILE* file);
+
+ void openSpikeFile(File rootFolder, SpikeRecordInfo* elec);
+ String generateSpikeHeader(SpikeRecordInfo* elec);
+
+ void openMessageFile(File rootFolder);
+ void writeTTLEvent(MidiMessage& event, int samplePosition);
+ void writeMessage(MidiMessage& event, int samplePosition);
+
+ bool separateFiles;
+ int blockIndex;
+ int recordingNumber;
+ int experimentNumber;
+
+ /** Holds data that has been converted from float to int16 before
+ saving.
+ */
+ int16* continuousDataIntegerBuffer;
+
+ /** Holds data that has been converted from float to int16 before
+ saving.
+ */
+ float* continuousDataFloatBuffer;
+
+ /** Used to indicate the end of each record */
+ char* recordMarker;
+
+ AudioSampleBuffer zeroBuffer;
+ int64 timestamp;
+
+ FILE* eventFile;
+ FILE* messageFile;
+ Array<FILE*> fileArray;
+ Array<FILE*> spikeFileArray;
+ CriticalSection diskWriteLock;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(OriginalRecording);
+};
+
+#endif // ORIGINALRECORDING_H_INCLUDED
diff --git a/Source/Processors/RecordNode/RecordEngine.cpp b/Source/Processors/RecordNode/RecordEngine.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..3d187092502ecfb2dc987d5ff8c55b1147424de1
--- /dev/null
+++ b/Source/Processors/RecordNode/RecordEngine.cpp
@@ -0,0 +1,260 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#include "RecordEngine.h"
+#include "RecordNode.h"
+#include "../ProcessorGraph/ProcessorGraph.h"
+
+#include "EngineConfigWindow.h"
+#include "HDF5Recording.h"
+#include "OriginalRecording.h"
+
+RecordEngine::RecordEngine()
+ : manager(nullptr)
+{
+}
+
+RecordEngine::~RecordEngine() {}
+
+void RecordEngine::setParameter(EngineParameter& parameter) {}
+
+void RecordEngine::resetChannels() {}
+
+void RecordEngine::registerProcessor(GenericProcessor* processor) {}
+
+Channel* RecordEngine::getChannel(int index)
+{
+ return getProcessorGraph()->getRecordNode()->getDataChannel(index);
+}
+
+String RecordEngine::generateDateString()
+{
+ return getProcessorGraph()->getRecordNode()->generateDateString();
+}
+
+SpikeRecordInfo* RecordEngine::getSpikeElectrode(int index)
+{
+ return getProcessorGraph()->getRecordNode()->getSpikeElectrode(index);
+}
+
+void RecordEngine::updateTimeStamp(int64 timestamp) {}
+
+void RecordEngine::registerSpikeSource(GenericProcessor* processor) {}
+
+void RecordEngine::startAcquisition() {}
+
+void RecordEngine::directoryChanged() {}
+
+void RecordEngine::registerManager(RecordEngineManager* recordManager)
+{
+ manager = recordManager;
+}
+
+void RecordEngine::configureEngine()
+{
+ if (!manager)
+ return;
+
+ for (int i=0; i < manager->getNumParameters(); i++)
+ setParameter(manager->getParameter(i));
+}
+
+//Manager
+
+EngineParameter::EngineParameter(EngineParameter::EngineParameterType paramType, int paramId, String paramName, var defaultValue, var min, var max)
+ : type(paramType), name(paramName), id(paramId), def(defaultValue)
+{
+ if (paramType == BOOL && defaultValue.isBool())
+ boolParam.value = defaultValue;
+ else if (paramType == INT)
+ {
+ intParam.value = defaultValue;
+ intParam.min= min;
+ intParam.max= max;
+ }
+ else if (paramType == FLOAT)
+ {
+ floatParam.value = defaultValue;
+ floatParam.min= min;
+ floatParam.max= max;
+ }
+ else if (paramType == STR)
+ strParam.value = defaultValue;
+}
+
+
+void EngineParameter::restoreDefault()
+{
+ switch (type)
+ {
+ case INT:
+ intParam.value = def;
+ break;
+ case FLOAT:
+ floatParam.value = def;
+ break;
+ case BOOL:
+ boolParam.value = def;
+ break;
+ case STR:
+ strParam.value = def;
+ }
+}
+
+RecordEngineManager::RecordEngineManager(String engineID, String engineName, EngineCreator creatorFunc) :
+ creator(creatorFunc), id(engineID), name(engineName), window(nullptr)
+{
+}
+
+RecordEngineManager::~RecordEngineManager()
+{
+}
+
+void RecordEngineManager::addParameter(EngineParameter* param)
+{
+ parameters.add(param);
+}
+
+RecordEngine* RecordEngineManager::instantiateEngine()
+{
+ if (creator)
+ return creator();
+
+ //Built-in engines
+ if (id == "KWIK")
+ return new HDF5Recording();
+
+ if (id == "OPENEPHYS")
+ return new OriginalRecording();
+
+ return nullptr;
+}
+
+int RecordEngineManager::getNumParameters()
+{
+ return parameters.size();
+}
+
+EngineParameter& RecordEngineManager::getParameter(int index)
+{
+ return *(parameters[index]);
+}
+
+String RecordEngineManager::getName()
+{
+ return name;
+}
+
+String RecordEngineManager::getID()
+{
+ return id;
+}
+
+bool RecordEngineManager::isWindowOpen()
+{
+ return window ? true : false;
+}
+
+void RecordEngineManager::toggleConfigWindow()
+{
+ if (window)
+ {
+ window->saveParameters();
+ window->setVisible(false);
+ window = nullptr;
+ }
+ else
+ {
+ window = new EngineConfigWindow(this);
+ window->setVisible(true);
+ }
+}
+
+void RecordEngineManager::saveParametersToXml(XmlElement* xml)
+{
+ for (int i=0; i < parameters.size(); i++)
+ {
+ XmlElement* param = xml->createNewChildElement("PARAMETER");
+ param->setAttribute("id",parameters[i]->id);
+ switch (parameters[i]->type)
+ {
+ case EngineParameter::BOOL:
+ param->setAttribute("type","bool");
+ param->setAttribute("value",parameters[i]->boolParam.value);
+ break;
+ case EngineParameter::INT:
+ param->setAttribute("type","int");
+ param->setAttribute("value",parameters[i]->intParam.value);
+ break;
+ case EngineParameter::FLOAT:
+ param->setAttribute("type","float");
+ param->setAttribute("value",parameters[i]->floatParam.value);
+ break;
+ case EngineParameter::STR:
+ param->setAttribute("type","string");
+ param->setAttribute("value",parameters[i]->strParam.value);
+ break;
+ }
+ }
+}
+
+void RecordEngineManager::loadParametersFromXml(XmlElement* xml)
+{
+ for (int i=0; i < parameters.size(); i++)
+ {
+ forEachXmlChildElementWithTagName(*xml,xmlNode,"PARAMETER")
+ {
+ if (xmlNode->getIntAttribute("id") == parameters[i]->id)
+ {
+ if ((xmlNode->getStringAttribute("type") == "bool") && (parameters[i]->type == EngineParameter::BOOL))
+ parameters[i]->boolParam.value = xmlNode->getBoolAttribute("value");
+ else if ((xmlNode->getStringAttribute("type") == "int") && (parameters[i]->type == EngineParameter::INT))
+ parameters[i]->intParam.value = xmlNode->getIntAttribute("value");
+ else if ((xmlNode->getStringAttribute("type") == "float") && (parameters[i]->type == EngineParameter::FLOAT))
+ parameters[i]->floatParam.value = xmlNode->getDoubleAttribute("value");
+ else if ((xmlNode->getStringAttribute("type") == "string") && (parameters[i]->type == EngineParameter::STR))
+ parameters[i]->strParam.value = xmlNode->getStringAttribute("value");
+ }
+ }
+ }
+}
+
+int RecordEngineManager::getNumOfBuiltInEngines()
+{
+ return 2;
+}
+
+RecordEngineManager* RecordEngineManager::createBuiltInEngineManager(int index)
+{
+ switch (index)
+ {
+ case 0:
+ return OriginalRecording::getEngineManager();
+ break;
+ case 1:
+ return HDF5Recording::getEngineManager();
+ break;
+ default:
+ return nullptr;
+ }
+}
\ No newline at end of file
diff --git a/Source/Processors/RecordNode/RecordEngine.h b/Source/Processors/RecordNode/RecordEngine.h
new file mode 100644
index 0000000000000000000000000000000000000000..2afd58d39fe5dfa2d1b1d0e7ba28d34d444e9343
--- /dev/null
+++ b/Source/Processors/RecordNode/RecordEngine.h
@@ -0,0 +1,239 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Florian Franzen
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ */
+
+#ifndef RECORDENGINE_H_INCLUDED
+#define RECORDENGINE_H_INCLUDED
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../Channel/Channel.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "../Visualization/SpikeObject.h"
+
+//Handy macros for setParameter
+#define boolParameter(i,v) if ((parameter.id == i) && (parameter.type == EngineParameter::BOOL)) \
+ v = parameter.boolParam.value
+#define intParameter(i,v) if ((parameter.id == i) && (parameter.type == EngineParameter::INT)) \
+ v = parameter.intParam.value
+#define floatParameter(i,v) if ((parameter.id == i) && (parameter.type == EngineParameter::FLOAT)) \
+ v = parameter.floatParam.value
+#define strParameter(i,v) if ((parameter.id == i) && (parameter.type == EngineParameter::STR)) \
+ v = parameter.strParam.value
+
+struct SpikeRecordInfo
+{
+ String name;
+ int numChannels;
+ int sampleRate;
+
+ int recordIndex;
+};
+
+class EngineParameter;
+class RecordNode;
+class RecordEngineManager;
+
+class RecordEngine : public AccessClass
+{
+public:
+ RecordEngine();
+ ~RecordEngine();
+ virtual String getEngineID() =0;
+
+ /** All the public methods (except registerManager) are called by RecordNode:
+ When acquisition starts (in the specified order):
+ 1-resetChannels
+ 2-registerProcessor, addChannel, registerSpikeSource, addspikeelectrode
+ 3-configureEngine (which calls setParameter)
+ 3-startAcquisition
+ When recording starts (in the specified order):
+ 1-directoryChanged (if needed)
+ 2-openFiles
+ During recording:
+ writeData, writeEvent, writeSpike, updateTimeStamp
+ When recording stops:
+ closeFiles
+ */
+
+ /** Called for registering parameters
+ */
+ virtual void setParameter(EngineParameter& parameter);
+
+ /** Called when recording starts to open all needed files
+ */
+ virtual void openFiles(File rootFolder, int experimentNumber, int recordingNumber) = 0;
+
+ /** Called when recording stops to close all files
+ and do all the necessary cleanups
+ */
+ virtual void closeFiles() = 0;
+
+ /** Write continuous data.
+ This method gets the full data buffer, it must query getRecordState for
+ each registered channel to determine which channels to actually write to disk
+ */
+ virtual void writeData(AudioSampleBuffer& buffer, int nSamples) = 0;
+
+ /** Write a single event to disk.
+ */
+ virtual void writeEvent(int eventType, MidiMessage& event, int samplePosition) = 0;
+
+ /** Called when acquisition starts once for each processor that might record continuous data
+ */
+ virtual void registerProcessor(GenericProcessor* processor);
+
+ /** Called after registerProcessor, once for each output
+ channel of the processor
+ */
+ virtual void addChannel(int index, Channel* chan) = 0;
+
+ /** Called when acquisition starts once for each processor that might record spikes
+ */
+ virtual void registerSpikeSource(GenericProcessor* processor);
+
+ /** Called after registerSpikesource, once for each channel group
+ */
+ virtual void addSpikeElectrode(int index, SpikeRecordInfo* elec) = 0;
+
+ /** Write a spike to disk
+ */
+ virtual void writeSpike(const SpikeObject& spike, int electrodeIndex) = 0;
+
+ /** Called when a new acquisition starts, to clean all channel data
+ before registering the processors
+ */
+ virtual void resetChannels();
+
+ /** Called every time a new timestamp event is received
+ */
+ virtual void updateTimeStamp(int64 timestamp);
+
+ /** Called after all channels and spike groups have been registered,
+ just before acquisition starts
+ */
+ virtual void startAcquisition();
+
+ /** Called when the recording directory changes during an acquisition
+ */
+ virtual void directoryChanged();
+
+
+ void registerManager(RecordEngineManager* engineManager);
+ void configureEngine();
+
+protected:
+ /** Functions to access RecordNode arrays and utilities
+ */
+
+ /** Gets the specified channel from the channel array stored in RecordNode
+ */
+ Channel* getChannel(int index);
+
+ /** Gets the specified channel group info structure from the array stored in RecordNode
+ */
+ SpikeRecordInfo* getSpikeElectrode(int index);
+
+ /** Generate a Matlab-compatible datestring
+ */
+ String generateDateString();
+
+private:
+ RecordEngineManager* manager;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RecordEngine);
+};
+
+typedef RecordEngine* (*EngineCreator)();
+
+struct EngineParameter
+{
+public:
+ enum EngineParameterType {STR, INT, FLOAT, BOOL};
+ EngineParameter(EngineParameterType paramType, int paramId, String paramName, var defaultValue, var min = 0, var max = 100);
+ void restoreDefault();
+
+ union
+ {
+ struct
+ {
+ int min;
+ int max;
+ int value;
+ } intParam;
+ struct
+ {
+ float min;
+ float max;
+ float value;
+ } floatParam;
+ struct
+ {
+ bool value;
+ } boolParam;
+ };
+ //Strings can't be inside an union. This means wasting a bit of memory, but adds more safety than using char*
+ struct
+ {
+ String value;
+ } strParam;
+
+ const EngineParameterType type;
+ const String name;
+ const int id;
+private:
+ var def;
+};
+
+class EngineConfigWindow;
+class RecordEngineManager
+{
+public:
+ RecordEngineManager(String engineID, String engineName, EngineCreator creatorFunc);
+ ~RecordEngineManager();
+ void addParameter(EngineParameter* param);
+
+ RecordEngine* instantiateEngine();
+ void toggleConfigWindow();
+ bool isWindowOpen();
+
+ void saveParametersToXml(XmlElement* xml);
+ void loadParametersFromXml(XmlElement* xml);
+
+ EngineParameter& getParameter(int index);
+ int getNumParameters();
+
+ String getID();
+ String getName();
+
+ static int getNumOfBuiltInEngines();
+ static RecordEngineManager* createBuiltInEngineManager(int index);
+
+private:
+ EngineCreator creator;
+ String id;
+ String name;
+ OwnedArray<EngineParameter> parameters;
+ ScopedPointer<EngineConfigWindow> window;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RecordEngineManager);
+};
+
+#endif // RECORDENGINE_H_INCLUDED
diff --git a/Source/Processors/RecordNode/RecordNode.cpp b/Source/Processors/RecordNode/RecordNode.cpp
new file mode 100755
index 0000000000000000000000000000000000000000..be85f4f21a78aa61205be4080daec55b662431cd
--- /dev/null
+++ b/Source/Processors/RecordNode/RecordNode.cpp
@@ -0,0 +1,519 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2014 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "RecordNode.h"
+#include "../ProcessorGraph/ProcessorGraph.h"
+#include "../../UI/EditorViewport.h"
+#include "../../UI/ControlPanel.h"
+
+#define EVERY_ENGINE for(int eng = 0; eng < engineArray.size(); eng++) engineArray[eng]
+
+
+
+#include "../Channel/Channel.h"
+
+RecordNode::RecordNode()
+ : GenericProcessor("Record Node"),
+ newDirectoryNeeded(true), timestamp(0)
+{
+
+ isProcessing = false;
+ isRecording = false;
+ allFilesOpened = false;
+ signalFilesShouldClose = false;
+
+ signalFilesShouldClose = false;
+
+ settings.numInputs = 2048;
+ settings.numOutputs = 0;
+
+ eventChannel = new Channel(this, 0);
+ eventChannel->setType(EVENT_CHANNEL);
+ recordingNumber = 0;
+
+
+ spikeElectrodeIndex = 0;
+
+ experimentNumber = 0;
+ hasRecorded = false;
+
+ // 128 inputs, 0 outputs
+ setPlayConfigDetails(getNumInputs(),getNumOutputs(),44100.0,128);
+
+}
+
+
+RecordNode::~RecordNode()
+{
+
+}
+
+void RecordNode::setChannel(Channel* ch)
+{
+
+ int channelNum = channelPointers.indexOf(ch);
+
+ std::cout << "Record node setting channel to " << channelNum << std::endl;
+
+ setCurrentChannel(channelNum);
+
+}
+
+void RecordNode::setChannelStatus(Channel* ch, bool status)
+{
+
+ //std::cout << "Setting channel status!" << std::endl;
+ setChannel(ch);
+
+ if (status)
+ setParameter(2, 1.0f);
+ else
+ setParameter(2, 0.0f);
+
+}
+
+
+void RecordNode::resetConnections()
+{
+ //std::cout << "Resetting connections" << std::endl;
+ nextAvailableChannel = 0;
+ wasConnected = false;
+ spikeElectrodeIndex = 0;
+
+ channelPointers.clear();
+ eventChannelPointers.clear();
+ spikeElectrodePointers.clear();
+
+ EVERY_ENGINE->resetChannels();
+
+}
+
+void RecordNode::filenameComponentChanged(FilenameComponent* fnc)
+{
+
+ dataDirectory = fnc->getCurrentFile();
+
+
+}
+
+void RecordNode::updateChannelName(int channelIndex, String newname)
+{
+ /* if (channelPointers[channelIndex] != nullptr && channelIndex < channelPointers.size())
+ {
+ channelPointers[channelIndex]->name = newname;
+ updateFileName(channelPointers[channelIndex]);
+ } else*/
+ {
+ // keep name and do the change when the pointer actually points to something... ?
+ modifiedChannelNames.add(newname);
+ modifiedChannelInd.add(channelIndex);
+ }
+}
+
+void RecordNode::getChannelNamesAndRecordingStatus(StringArray& names, Array<bool>& recording)
+{
+ names.clear();
+ recording.clear();
+
+ for (int k = 0; k < channelPointers.size(); k++)
+ {
+ if (channelPointers[k] == nullptr)
+ {
+ names.add("not allocated");
+ recording.add(false);
+
+ }
+ else
+ {
+ Channel* ch = channelPointers[k];
+ String n = ch->name;
+ names.add(n);
+ recording.add(channelPointers[k]->getRecordState());
+ }
+ }
+}
+
+void RecordNode::addInputChannel(GenericProcessor* sourceNode, int chan)
+{
+
+ if (chan != getProcessorGraph()->midiChannelIndex)
+ {
+
+ int channelIndex = getNextChannel(false);
+
+ channelPointers.add(sourceNode->channels[chan]);
+ setPlayConfigDetails(channelIndex+1,0,44100.0,128);
+
+ // std::cout << channelIndex << std::endl;
+
+ channelPointers[channelIndex]->recordIndex = channelIndex;
+
+ EVERY_ENGINE->addChannel(channelIndex,channelPointers[channelIndex]);
+
+ }
+ else
+ {
+
+ for (int n = 0; n < sourceNode->eventChannels.size(); n++)
+ {
+
+ eventChannelPointers.add(sourceNode->eventChannels[n]);
+
+ }
+
+ }
+
+}
+
+void RecordNode::updateTrialNumber()
+{
+ trialNum++;
+}
+
+void RecordNode::appendTrialNumber(bool t)
+{
+ appendTrialNum = t;
+}
+
+
+void RecordNode::createNewDirectory()
+{
+ std::cout << "Creating new directory." << std::endl;
+
+ rootFolder = File(dataDirectory.getFullPathName() + File::separator + generateDirectoryName());
+ newDirectoryNeeded = false;
+
+}
+
+String RecordNode::generateDirectoryName()
+{
+ Time calendar = Time::getCurrentTime();
+
+ Array<int> t;
+ t.add(calendar.getYear());
+ t.add(calendar.getMonth()+1); // January = 0
+ t.add(calendar.getDayOfMonth());
+ t.add(calendar.getHours());
+ t.add(calendar.getMinutes());
+ t.add(calendar.getSeconds());
+
+ String filename = getControlPanel()->getTextToPrepend();
+
+ String datestring = "";
+
+ for (int n = 0; n < t.size(); n++)
+ {
+ if (t[n] < 10)
+ datestring += "0";
+
+ datestring += t[n];
+
+ if (n == 2)
+ datestring += "_";
+ else if (n < 5)
+ datestring += "-";
+ }
+
+ getControlPanel()->setDateText(datestring);
+
+ filename += datestring;
+ filename += getControlPanel()->getTextToAppend();
+
+ return filename;
+
+}
+
+String RecordNode::generateDateString()
+{
+ Time calendar = Time::getCurrentTime();
+
+ String datestring;
+
+ datestring += String(calendar.getDayOfMonth());
+ datestring += "-";
+ datestring += calendar.getMonthName(true);
+ datestring += "-";
+ datestring += String(calendar.getYear());
+ datestring += " ";
+
+ int hrs, mins, secs;
+ hrs = calendar.getHours();
+ mins = calendar.getMinutes();
+ secs = calendar.getSeconds();
+
+ datestring += hrs;
+
+ if (mins < 10)
+ datestring += 0;
+
+ datestring += mins;
+
+ if (secs < 0)
+ datestring += 0;
+
+ datestring += secs;
+
+ return datestring;
+
+}
+
+
+void RecordNode::setParameter(int parameterIndex, float newValue)
+{
+ //editor->updateParameterButtons(parameterIndex);
+
+ // 0 = stop recording
+ // 1 = start recording
+ // 2 = toggle individual channel (0.0f = OFF, anything else = ON)
+
+ if (parameterIndex == 1)
+ {
+
+ isRecording = true;
+ hasRecorded = true;
+ // std::cout << "START RECORDING." << std::endl;
+
+ if (newDirectoryNeeded)
+ {
+ createNewDirectory();
+ recordingNumber = 0;
+ experimentNumber = 1;
+ EVERY_ENGINE->directoryChanged();
+ }
+ else
+ {
+ recordingNumber++; // increment recording number within this directory
+ }
+
+ if (!rootFolder.exists())
+ {
+ rootFolder.createDirectory();
+ String settingsFileName = rootFolder.getFullPathName() + File::separator + "settings.xml";
+ getEditorViewport()->saveState(File(settingsFileName));
+ }
+
+ EVERY_ENGINE->openFiles(rootFolder, experimentNumber, recordingNumber);
+
+ allFilesOpened = true;
+
+ }
+ else if (parameterIndex == 0)
+ {
+
+
+ // std::cout << "STOP RECORDING." << std::endl;
+
+ if (isRecording)
+ {
+
+ // close necessary files
+ signalFilesShouldClose = true;
+
+ }
+
+ isRecording = false;
+
+
+ }
+ else if (parameterIndex == 2)
+ {
+
+ if (isProcessing)
+ {
+
+ std::cout << "Toggling channel " << currentChannel << std::endl;
+
+ if (isRecording)
+ {
+ //Toggling channels while recording isn't allowed. Code shouldn't reach here.
+ //In case it does, display an error and exit.
+ sendActionMessage("Toggling record channels while recording is not allowed");
+ std::cout << "ERROR: Wrong code section reached\n Toggling record channels while recording is not allowed." << std::endl;
+ return;
+ }
+
+ if (newValue == 0.0f)
+ {
+ channelPointers[currentChannel]->setRecordState(false);
+ }
+ else
+ {
+ channelPointers[currentChannel]->setRecordState(true);
+ }
+ }
+ }
+}
+
+void RecordNode::closeAllFiles()
+{
+ if (allFilesOpened)
+ {
+ EVERY_ENGINE->closeFiles();
+ allFilesOpened = false;
+ }
+}
+
+bool RecordNode::enable()
+{
+ if (hasRecorded)
+ {
+ hasRecorded = false;
+ experimentNumber++;
+ }
+
+ //When starting a recording, if a new directory is needed it gets rewritten. Else is incremented by one.
+ recordingNumber = -1;
+ EVERY_ENGINE->configureEngine();
+ EVERY_ENGINE->startAcquisition();
+ isProcessing = true;
+ return true;
+}
+
+
+bool RecordNode::disable()
+{
+ // close files if necessary
+ setParameter(0, 10.0f);
+
+ if (isProcessing)
+ closeAllFiles();
+
+ isProcessing = false;
+
+ return true;
+}
+
+float RecordNode::getFreeSpace()
+{
+ return 1.0f - float(dataDirectory.getBytesFreeOnVolume())/float(dataDirectory.getVolumeTotalSize());
+}
+
+
+void RecordNode::handleEvent(int eventType, MidiMessage& event, int samplePosition)
+{
+ if ((eventType == TTL) || (eventType == MESSAGE))
+ {
+ if (event.getNoteNumber() > 0) // processor ID > 0
+ {
+ EVERY_ENGINE->writeEvent(eventType, event, samplePosition);
+ }
+ }
+ else if (eventType == TIMESTAMP)
+ {
+ const uint8* dataptr = event.getRawData();
+
+ // // double-check buffer contents:s
+ // std::cout << (int) *(dataptr + 11) << " " <<
+ // (int) *(dataptr + 10) << " " <<
+ // (int) *(dataptr + 9) << " " <<
+ // (int) *(dataptr + 8) << " " <<
+ // (int) *(dataptr + 7) << " " <<
+ // (int) *(dataptr + 6) << " " <<
+ // (int) *(dataptr + 5) << " " <<
+ // (int) *(dataptr + 4) << std::endl;
+
+ memcpy(×tamp, dataptr + 4, 8); // remember to skip first four bytes
+ EVERY_ENGINE->updateTimeStamp(timestamp);
+ }
+ else if (eventType == MESSAGE)
+ {
+ std::cout << "Received event!" << std::endl;
+ }
+
+}
+
+void RecordNode::process(AudioSampleBuffer& buffer,
+ MidiBuffer& events,
+ int& nSamples)
+{
+
+ if (isRecording && allFilesOpened)
+ {
+
+ // FIRST: cycle through events -- extract the TTLs and the timestamps
+ checkForEvents(events);
+
+ // SECOND: write channel data
+ if (channelPointers.size() > 0)
+ {
+ EVERY_ENGINE->writeData(buffer,nSamples);
+ }
+
+ // std::cout << nSamples << " " << samplesWritten << " " << blockIndex << std::endl;
+
+ return;
+
+ }
+
+ // this is intended to prevent parameter changes from closing files
+ // before recording stops
+ if (signalFilesShouldClose)
+ {
+ closeAllFiles();
+ signalFilesShouldClose = false;
+ }
+
+}
+
+void RecordNode::registerProcessor(GenericProcessor* sourceNode)
+{
+ EVERY_ENGINE->registerProcessor(sourceNode);
+}
+
+Channel* RecordNode::getDataChannel(int index)
+{
+ return channelPointers[index];
+}
+
+void RecordNode::registerRecordEngine(RecordEngine* engine)
+{
+ engineArray.add(engine);
+}
+
+void RecordNode::registerSpikeSource(GenericProcessor* processor)
+{
+ EVERY_ENGINE->registerSpikeSource(processor);
+}
+
+int RecordNode::addSpikeElectrode(SpikeRecordInfo* elec)
+{
+ elec->recordIndex=spikeElectrodeIndex;
+ spikeElectrodePointers.add(elec);
+ EVERY_ENGINE->addSpikeElectrode(spikeElectrodeIndex,elec);
+ return spikeElectrodeIndex++;
+}
+
+void RecordNode::writeSpike(SpikeObject& spike, int electrodeIndex)
+{
+ EVERY_ENGINE->writeSpike(spike,electrodeIndex);
+}
+
+SpikeRecordInfo* RecordNode::getSpikeElectrode(int index)
+{
+ return spikeElectrodePointers[index];
+}
+
+void RecordNode::clearRecordEngines()
+{
+ engineArray.clear();
+}
diff --git a/Source/Processors/RecordNode.h b/Source/Processors/RecordNode/RecordNode.h
similarity index 72%
rename from Source/Processors/RecordNode.h
rename to Source/Processors/RecordNode/RecordNode.h
index 39b3c1d031b7ebf0786b0f17c326c88745ed5a5d..446ba15968ced19e3c20a4330d1f07958c46da3e 100755
--- a/Source/Processors/RecordNode.h
+++ b/Source/Processors/RecordNode/RecordNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,15 +23,16 @@
#ifndef __RECORDNODE_H_FB9B1CA7__
#define __RECORDNODE_H_FB9B1CA7__
-
-
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include <stdio.h>
#include <map>
-#include "GenericProcessor.h"
-#include "Channel.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "../Channel/Channel.h"
+#include "RecordEngine.h"
+
+
#define HEADER_SIZE 1024
#define BLOCK_LENGTH 1024
@@ -71,11 +72,26 @@ public:
*/
void setParameter(int parameterIndex, float newValue);
+ /** Called by the processor graph for each processor that could record data
+ */
+ void registerProcessor(GenericProcessor* sourceNode);
+ /** Called by the processor graph for each recordable channel
+ */
void addInputChannel(GenericProcessor* sourceNode, int chan);
bool enable();
bool disable();
+ /** returns channel names and whether we record them */
+ void getChannelNamesAndRecordingStatus(StringArray &names, Array<bool> &recording);
+
+ /** update channel name */
+ void updateChannelName(int channelIndex, String newname);
+
+ /** Get channel stored in channelPointers array
+ */
+ Channel* getDataChannel(int index);
+
/** Called by the ControlPanel to determine the amount of space
left in the current dataDirectory.
*/
@@ -103,21 +119,40 @@ public:
*/
void createNewDirectory();
- /** Creates a new data file for each channel.
- */
- void createNewFiles();
-
- /** Creates a new data file for each channel.
- */
- void appendTrialNumber(bool);
-
- void updateTrialNumber();
File getDataDirectory()
{
return rootFolder;
}
+ void appendTrialNumber(bool);
+
+ void updateTrialNumber();
+
+ /** Adds a Record Engine to use
+ */
+ void registerRecordEngine(RecordEngine* engine);
+
+ /** Clears the list of active Record Engines
+ */
+ void clearRecordEngines();
+
+ /** Must be called by a spike recording source on the "enable" method
+ */
+ void registerSpikeSource(GenericProcessor* processor);
+
+ /** Registers an electrode group for spike recording
+ Must be called by a spike recording source on the "enable" method
+ after the call to registerSpikeSource
+ */
+ int addSpikeElectrode(SpikeRecordInfo* elec);
+
+ /** Called by a spike recording source to write a spike to file
+ */
+ void writeSpike(SpikeObject& spike, int electrodeIndex);
+
+ SpikeRecordInfo* getSpikeElectrode(int index);
+
/** Signals when to create a new data directory when recording starts.*/
bool newDirectoryNeeded;
@@ -127,12 +162,6 @@ public:
/** Generate a Matlab-compatible datestring */
String generateDateString();
- CriticalSection* getLock()
- {
- return &diskWriteLock;
- }
-
-
private:
/** Keep the RecordNode informed of acquisition and record states.
@@ -148,25 +177,11 @@ private:
*/
File rootFolder;
- /** Holds data that has been converted from float to int16 before
- saving.
- */
- int16* continuousDataIntegerBuffer;
-
- /** Holds data that has been converted from float to int16 before
- saving.
- */
- float* continuousDataFloatBuffer;
-
- AudioSampleBuffer zeroBuffer;
/** Integer timestamp saved for each buffer.
*/
int64 timestamp;
- /** Integer to keep track of the number samples written in each block */
- int blockIndex;
-
/** Integer to keep track of number of recording sessions in the same file */
uint16 recordingNumber;
@@ -174,12 +189,6 @@ private:
*/
Time timer;
- /** Opens a single file */
- void openFile(Channel* ch);
-
- /** Closes a single file */
- void closeFile(Channel* ch);
-
/** Closes all open files after recording has finished.
*/
void closeAllFiles();
@@ -190,16 +199,17 @@ private:
/** Pointers to all event channels */
Array<Channel*> eventChannelPointers;
- /** Generates a header for a given channel */
- String generateHeader(Channel* ch);
+ OwnedArray<SpikeRecordInfo> spikeElectrodePointers;
+
+ int spikeElectrodeIndex;
+
+ int experimentNumber;
+ bool hasRecorded;
/** Generates a default directory name, based on the current date and time */
String generateDirectoryName();
- /** Generate filename for a given channel */
- void updateFileName(Channel* ch);
-
/** Cycle through the event buffer, looking for data to save */
void handleEvent(int eventType, MidiMessage& event, int samplePos);
@@ -222,9 +232,16 @@ private:
CriticalSection diskWriteLock;
+ Array<String> modifiedChannelNames;
+ Array<int> modifiedChannelInd;
+
bool appendTrialNum;
int trialNum;
+ /**RecordEngines loaded**/
+ OwnedArray<RecordEngine> engineArray;
+
+
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(RecordNode);
};
diff --git a/Source/Processors/ReferenceNode.cpp b/Source/Processors/ReferenceNode/ReferenceNode.cpp
similarity index 93%
rename from Source/Processors/ReferenceNode.cpp
rename to Source/Processors/ReferenceNode/ReferenceNode.cpp
index fc87145ba62053a5b0a01cd9b4b6ef9d982d7011..b162d8b42d619a820491c8be70e5c6f9b4871da6 100644
--- a/Source/Processors/ReferenceNode.cpp
+++ b/Source/Processors/ReferenceNode/ReferenceNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,7 @@
#include <stdio.h>
#include "ReferenceNode.h"
-#include "Editors/ReferenceNodeEditor.h"
+#include "ReferenceNodeEditor.h"
diff --git a/Source/Processors/ReferenceNode.h b/Source/Processors/ReferenceNode/ReferenceNode.h
similarity index 88%
rename from Source/Processors/ReferenceNode.h
rename to Source/Processors/ReferenceNode/ReferenceNode.h
index 6f78e4196d08f8ff966a2e1d88aa754e576833c3..15038e72a5d824c7c2a9af0ccbbdb4c31d14f599 100644
--- a/Source/Processors/ReferenceNode.h
+++ b/Source/Processors/ReferenceNode/ReferenceNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,9 +25,9 @@
#define __REFERENCENODE_H_786EA929__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
/**
diff --git a/Source/Processors/Editors/ReferenceNodeEditor.cpp b/Source/Processors/ReferenceNode/ReferenceNodeEditor.cpp
similarity index 93%
rename from Source/Processors/Editors/ReferenceNodeEditor.cpp
rename to Source/Processors/ReferenceNode/ReferenceNodeEditor.cpp
index 0dc80bff2ff439dbce5602cf82f9315cd75a6cf8..25054001c1b7bb6746648e3911703623663aa857 100644
--- a/Source/Processors/Editors/ReferenceNodeEditor.cpp
+++ b/Source/Processors/ReferenceNode/ReferenceNodeEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,7 @@
#include "ReferenceNodeEditor.h"
-#include "../ReferenceNode.h"
+#include "ReferenceNode.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/ReferenceNodeEditor.h b/Source/Processors/ReferenceNode/ReferenceNodeEditor.h
similarity index 92%
rename from Source/Processors/Editors/ReferenceNodeEditor.h
rename to Source/Processors/ReferenceNode/ReferenceNodeEditor.h
index 7ae0f9a5de24865e06b096d5de429a1156a0ee43..efce3f1a014f384e3fab2a6a805c88d8b7571f6c 100644
--- a/Source/Processors/Editors/ReferenceNodeEditor.h
+++ b/Source/Processors/ReferenceNode/ReferenceNodeEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#define __REFERENCENODEEDITOR_H_370C056D__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
diff --git a/Source/Processors/ResamplingNode.cpp b/Source/Processors/ResamplingNode/ResamplingNode.cpp
similarity index 95%
rename from Source/Processors/ResamplingNode.cpp
rename to Source/Processors/ResamplingNode/ResamplingNode.cpp
index cb595dc4c7c2cc537f9181b7adc4595e65ac751c..af68d740f32b795fe7d12dc0fc20536766e1e4ea 100755
--- a/Source/Processors/ResamplingNode.cpp
+++ b/Source/Processors/ResamplingNode/ResamplingNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "ResamplingNode.h"
-#include "Editors/ResamplingNodeEditor.h"
+#include "ResamplingNodeEditor.h"
#include <stdio.h>
diff --git a/Source/Processors/ResamplingNode.h b/Source/Processors/ResamplingNode/ResamplingNode.h
similarity index 90%
rename from Source/Processors/ResamplingNode.h
rename to Source/Processors/ResamplingNode/ResamplingNode.h
index 9cd95c4c183b12f6ad652b18063204d43b864d7c..0b864eade577f5f8fcf20df097be62e1d84db291 100755
--- a/Source/Processors/ResamplingNode.h
+++ b/Source/Processors/ResamplingNode/ResamplingNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,9 +25,9 @@
#define __RESAMPLINGNODE_H_79663B0__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include "../Dsp/Dsp.h"
-#include "GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#define TEMP_BUFFER_WIDTH 5000
diff --git a/Source/Processors/Editors/ResamplingNodeEditor.cpp b/Source/Processors/ResamplingNode/ResamplingNodeEditor.cpp
similarity index 94%
rename from Source/Processors/Editors/ResamplingNodeEditor.cpp
rename to Source/Processors/ResamplingNode/ResamplingNodeEditor.cpp
index f18846b7ded9387c74f10192dad777be1d464d30..6437754e30819ecd5f4692612b3cbace7640886f 100644
--- a/Source/Processors/Editors/ResamplingNodeEditor.cpp
+++ b/Source/Processors/ResamplingNode/ResamplingNodeEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/ResamplingNodeEditor.h b/Source/Processors/ResamplingNode/ResamplingNodeEditor.h
similarity index 91%
rename from Source/Processors/Editors/ResamplingNodeEditor.h
rename to Source/Processors/ResamplingNode/ResamplingNodeEditor.h
index 9e347e62b696f8911113b45e0093233bb8bc1471..2cc8d380d1e6658abcea6c9feeb516f2ad079be3 100644
--- a/Source/Processors/Editors/ResamplingNodeEditor.h
+++ b/Source/Processors/ResamplingNode/ResamplingNodeEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,7 +26,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
diff --git a/Source/Processors/Serial/PulsePal.cpp b/Source/Processors/Serial/PulsePal.cpp
index 8dccb1fbb41558a669f5e9f4e242dd1362953048..f1b745892122b9786a5a2e819d961c732951a6cb 100644
--- a/Source/Processors/Serial/PulsePal.cpp
+++ b/Source/Processors/Serial/PulsePal.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Serial/PulsePal.h b/Source/Processors/Serial/PulsePal.h
index 819f2c4d59a957e2135d72e5858a2052e7d2e8d7..fc3cad7bde23d513c25324922fb0b10876bf915b 100644
--- a/Source/Processors/Serial/PulsePal.h
+++ b/Source/Processors/Serial/PulsePal.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Serial/ofConstants.h b/Source/Processors/Serial/ofConstants.h
index f8179b25d922de782362171a5bcac6a772886a18..1be50a332e8f1cbb8da325607765398eb1e16639 100755
--- a/Source/Processors/Serial/ofConstants.h
+++ b/Source/Processors/Serial/ofConstants.h
@@ -47,9 +47,6 @@
#include <windows.h>
#define GLEW_STATIC
-//#include "GL\glew.h"
-//#include "GL\wglew.h"
-//#include "glu.h"
#define __WINDOWS_DS__
#define __WINDOWS_MM__
#if (_MSC_VER) // microsoft visual studio
@@ -91,9 +88,6 @@
#define __MACOSX_CORE__
#endif
#include <unistd.h>
-//#include "GL/glew.h"
-//#include <OpenGL/gl.h>
-//#include <ApplicationServices/ApplicationServices.h>
#if defined(__LITTLE_ENDIAN__)
#define TARGET_LITTLE_ENDIAN // intel cpu
@@ -103,9 +97,6 @@
#ifdef TARGET_LINUX
#define GL_GLEXT_PROTOTYPES
#include <unistd.h>
-//#include <GL/glew.h>
-//#include <GL/gl.h>
-//#include <GL/glx.h>
// for some reason, this isn't defined at compile time,
// so this hack let's us work
@@ -124,29 +115,15 @@
#ifdef TARGET_OF_IPHONE
-//#import <OpenGLES/ES1/gl.h>
-//#import <OpenGLES/ES1/glext.h>
-
#define TARGET_LITTLE_ENDIAN // arm cpu
#endif
#ifdef TARGET_ANDROID
#include <typeinfo>
#include <unistd.h>
-//#include <GLES/gl.h>
-//#define GL_GLEXT_PROTOTYPES
-//#include <GLES/glext.h>
-
#define TARGET_LITTLE_ENDIAN
#endif
-#ifdef TARGET_OPENGLES
-#include "glu.h"
-//typedef GLushort ofIndexType ;
-#else
-//typedef GLuint ofIndexType;
-#endif
-
#ifndef __MWERKS__
#include <cstdlib>
diff --git a/Source/Processors/SerialInput.cpp b/Source/Processors/SerialInput/SerialInput.cpp
similarity index 95%
rename from Source/Processors/SerialInput.cpp
rename to Source/Processors/SerialInput/SerialInput.cpp
index 4946179ffb22247f8ea5cb1eddb8223d7b7bc52d..3664068bd1e8dd7d479c9d913fdc65c3b7add50a 100644
--- a/Source/Processors/SerialInput.cpp
+++ b/Source/Processors/SerialInput/SerialInput.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Florian Franzen
+ Copyright (C) 2014 Florian Franzen
------------------------------------------------------------------
diff --git a/Source/Processors/SerialInput.h b/Source/Processors/SerialInput/SerialInput.h
similarity index 91%
rename from Source/Processors/SerialInput.h
rename to Source/Processors/SerialInput/SerialInput.h
index 44b14d36595071478cb76b17542813d5448d2157..96f8292d47409ec5f64595db38db4813f6e2bca2 100644
--- a/Source/Processors/SerialInput.h
+++ b/Source/Processors/SerialInput/SerialInput.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Florian Franzen
+ Copyright (C) 2014 Florian Franzen
------------------------------------------------------------------
@@ -28,11 +28,11 @@
#include <Windows.h>
#endif
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
-#include "Editors/SerialInputEditor.h"
-#include "Serial/ofSerial.h"
+#include "SerialInputEditor.h"
+#include "../Serial/ofSerial.h"
/**
diff --git a/Source/Processors/Editors/SerialInputEditor.cpp b/Source/Processors/SerialInput/SerialInputEditor.cpp
similarity index 94%
rename from Source/Processors/Editors/SerialInputEditor.cpp
rename to Source/Processors/SerialInput/SerialInputEditor.cpp
index 9fbf677b81bc37ae4b31a619e7c469ef8b6a52d6..6488366d94947caea8b7ab9a4c7da580c3c42b86 100644
--- a/Source/Processors/Editors/SerialInputEditor.cpp
+++ b/Source/Processors/SerialInput/SerialInputEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Florian Franzen
+ Copyright (C) 2014 Florian Franzen
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "SerialInputEditor.h"
-#include "../SerialInput.h"
+#include "SerialInput.h"
#include <string>
#include <iostream>
diff --git a/Source/Processors/Editors/SerialInputEditor.h b/Source/Processors/SerialInput/SerialInputEditor.h
similarity index 93%
rename from Source/Processors/Editors/SerialInputEditor.h
rename to Source/Processors/SerialInput/SerialInputEditor.h
index ef3fd40c46c5322dce7708c49804a6172a70af6c..49a40a3774738515250723e074864e272f0a399f 100644
--- a/Source/Processors/Editors/SerialInputEditor.h
+++ b/Source/Processors/SerialInput/SerialInputEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Florian Franzen
+ Copyright (C) 2014 Florian Franzen
------------------------------------------------------------------
@@ -29,7 +29,7 @@
#endif
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
class SerialInput;
diff --git a/Source/Processors/SignalGenerator.cpp b/Source/Processors/SignalGenerator/SignalGenerator.cpp
similarity index 96%
rename from Source/Processors/SignalGenerator.cpp
rename to Source/Processors/SignalGenerator/SignalGenerator.cpp
index 63091f84ffa9219ec0205f3e8770f56fd40eada7..43c320fbe062b94ce743ac608f46bfbb5a567ef3 100755
--- a/Source/Processors/SignalGenerator.cpp
+++ b/Source/Processors/SignalGenerator/SignalGenerator.cpp
@@ -25,7 +25,7 @@
#include "SignalGenerator.h"
#include <stdio.h>
#include <math.h>
-#include "Visualization/SpikeObject.h"
+#include "../Visualization/SpikeObject.h"
#ifdef WIN32
#define copysign(x,y) _copysign(x,y)
diff --git a/Source/Processors/SignalGenerator.h b/Source/Processors/SignalGenerator/SignalGenerator.h
similarity index 90%
rename from Source/Processors/SignalGenerator.h
rename to Source/Processors/SignalGenerator/SignalGenerator.h
index 7e19e74aea60e39e6f3884b1613aa31e4b464e04..eef1de4ee0e9202ab9a493196d0737a048b33fd3 100755
--- a/Source/Processors/SignalGenerator.h
+++ b/Source/Processors/SignalGenerator/SignalGenerator.h
@@ -25,9 +25,9 @@
#define __SIGNALGENERATOR_H_EAA44B0B__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/SignalGeneratorEditor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "SignalGeneratorEditor.h"
/**
diff --git a/Source/Processors/Editors/SignalGeneratorEditor.cpp b/Source/Processors/SignalGenerator/SignalGeneratorEditor.cpp
similarity index 96%
rename from Source/Processors/Editors/SignalGeneratorEditor.cpp
rename to Source/Processors/SignalGenerator/SignalGeneratorEditor.cpp
index f4a12a9150bea9d0dc25cf0b3401b440408e8b95..8998f0aeb5a619d8de9a9c1673e8faa6bd210611 100755
--- a/Source/Processors/Editors/SignalGeneratorEditor.cpp
+++ b/Source/Processors/SignalGenerator/SignalGeneratorEditor.cpp
@@ -23,7 +23,7 @@
#include "SignalGeneratorEditor.h"
-#include "../SignalGenerator.h"
+#include "SignalGenerator.h"
#include "../../UI/EditorViewport.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/SignalGeneratorEditor.h b/Source/Processors/SignalGenerator/SignalGeneratorEditor.h
similarity index 94%
rename from Source/Processors/Editors/SignalGeneratorEditor.h
rename to Source/Processors/SignalGenerator/SignalGeneratorEditor.h
index d4c7ddcc20eb2962df4d3e0e9e0fd678b82f012e..69d39d0d1be607ee8232286d5bbd7794f0088aec 100755
--- a/Source/Processors/Editors/SignalGeneratorEditor.h
+++ b/Source/Processors/SignalGenerator/SignalGeneratorEditor.h
@@ -25,7 +25,7 @@
#define __SIGNALGENERATOREDITOR_H_841A7078__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
class FilterViewport;
class WaveformSelector;
diff --git a/Source/Processors/SourceNode.cpp b/Source/Processors/SourceNode/SourceNode.cpp
similarity index 73%
rename from Source/Processors/SourceNode.cpp
rename to Source/Processors/SourceNode/SourceNode.cpp
index b93733cc3ac78235606544384d0e3b661639224f..4fc33fac0e7c1bad823a43b761dd79663af90c58 100755
--- a/Source/Processors/SourceNode.cpp
+++ b/Source/Processors/SourceNode/SourceNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,15 +22,17 @@
*/
#include "SourceNode.h"
-#include "DataThreads/DataBuffer.h"
+#include "../DataThreads/DataBuffer.h"
//#include "DataThreads/IntanThread.h"
-#include "DataThreads/FPGAThread.h"
-#include "DataThreads/FileReaderThread.h"
-#include "DataThreads/RHD2000Thread.h"
-#include "Editors/SourceNodeEditor.h"
-#include "Editors/FileReaderEditor.h"
-#include "Editors/RHD2000Editor.h"
-#include "Channel.h"
+#include "../DataThreads/FPGAThread.h"
+#include "../DataThreads/FileReaderThread.h"
+#include "../DataThreads/RHD2000Thread.h"
+#include "../DataThreads/EcubeThread.h" // Added by Michael Borisov
+#include "../SourceNode/SourceNodeEditor.h"
+#include "../FileReader/FileReaderEditor.h"
+#include "../DataThreads/RHD2000Editor.h"
+#include "../DataThreads/EcubeEditor.h" // Added by Michael Borisov
+#include "../Channel/Channel.h"
#include <stdio.h>
SourceNode::SourceNode(const String& name_)
@@ -43,7 +45,7 @@ SourceNode::SourceNode(const String& name_)
if (getName().equalsIgnoreCase("RHA2000-EVAL"))
{
- // dataThread = new IntanThread(this);
+ // dataThread = new IntanThread(this);o
}
else if (getName().equalsIgnoreCase("Custom FPGA"))
{
@@ -57,6 +59,12 @@ SourceNode::SourceNode(const String& name_)
{
dataThread = new RHD2000Thread(this);
}
+#if ECUBE_COMPILE
+ else if (getName().equalsIgnoreCase("eCube"))
+ {
+ dataThread = new EcubeThread(this);
+ }
+#endif
if (dataThread != 0)
{
@@ -108,6 +116,85 @@ DataThread* SourceNode::getThread()
return dataThread;
}
+int SourceNode::modifyChannelName(channelType t, int str, int ch, String newName, bool updateSignalChain)
+{
+ if (dataThread != 0) {
+ int channel_index = dataThread->modifyChannelName(t, str, ch, newName);
+ if (channel_index >= 0 && channel_index < channels.size())
+ {
+ if (channels[channel_index]->getChannelName() != newName)
+ {
+ channels[channel_index]->setName(newName);
+ // propagate this information...
+
+ if (updateSignalChain)
+ getEditorViewport()->makeEditorVisible(getEditor(), false, true);
+
+ }
+ }
+ return channel_index;
+ }
+ return -1;
+}
+
+int SourceNode::modifyChannelGain(int stream, int channel,channelType type, float gain, bool updateSignalChain)
+{
+ if (dataThread != 0)
+ {
+
+ int channel_index = dataThread->modifyChannelGain(type, stream, channel, gain);
+
+ if (channel_index >= 0 && channel_index < channels.size())
+ {
+ // we now need to update the signal chain to propagate this change.....
+ if (channels[channel_index]->getChannelGain() != gain)
+ {
+ channels[channel_index]->setGain(gain);
+
+ if (updateSignalChain)
+ getEditorViewport()->makeEditorVisible(getEditor(), false, true);
+
+ return channel_index;
+ }
+ }
+ }
+
+ return -1;
+}
+
+void SourceNode::getChannelsInfo(StringArray &names, Array<channelType> &types, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains)
+{
+ if (dataThread != 0)
+ dataThread->getChannelsInfo(names, types,stream,originalChannelNumber,gains);
+}
+
+void SourceNode::setDefaultNamingScheme(int scheme)
+{
+ if (dataThread != 0)
+ {
+ dataThread->setDefaultNamingScheme(scheme);
+
+ StringArray names;
+ Array<channelType> types;
+ Array<int> stream;
+ Array<int> originalChannelNumber;
+ Array<float> gains;
+ getChannelsInfo(names, types, stream, originalChannelNumber, gains);
+ for (int k=0;k<names.size();k++)
+ {
+ modifyChannelName(types[k],stream[k],originalChannelNumber[k], names[k],false);
+ }
+ }
+
+}
+
+void SourceNode::getEventChannelNames(StringArray &names)
+{
+ if (dataThread != 0)
+ dataThread->getEventChannelNames(names);
+
+}
+
void SourceNode::updateSettings()
{
if (inputBuffer == 0 && dataThread != 0)
@@ -122,7 +209,7 @@ void SourceNode::updateSettings()
{
Channel* ch = new Channel(this, i);
ch->eventType = TTL;
- ch->isEventChannel = true;
+ ch->getType() == EVENT_CHANNEL;
eventChannels.add(ch);
}
diff --git a/Source/Processors/SourceNode.h b/Source/Processors/SourceNode/SourceNode.h
similarity index 76%
rename from Source/Processors/SourceNode.h
rename to Source/Processors/SourceNode/SourceNode.h
index 286bfd4ca10806c7bfd4e8f6ad08707fd8901d74..3e92609d9a268a913c8ee5b3b2f6d108d11ef9bb 100755
--- a/Source/Processors/SourceNode.h
+++ b/Source/Processors/SourceNode/SourceNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,11 +24,11 @@
#ifndef __SOURCENODE_H_DCE798F1__
#define __SOURCENODE_H_DCE798F1__
-#include "../../JuceLibraryCode/JuceHeader.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include <stdio.h>
-#include "DataThreads/DataThread.h"
-#include "GenericProcessor.h"
-#include "../UI/UIComponent.h"
+#include "../DataThreads/DataThread.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "../../UI/UIComponent.h"
/**
@@ -60,6 +60,13 @@ public:
int getDefaultNumOutputs();
float getDefaultBitVolts();
+ int modifyChannelGain(int stream, int channel,channelType type, float gain, bool updateSignalChain);
+ int modifyChannelName(channelType t, int str, int ch, String newName, bool updateSignalChain);
+
+ void getChannelsInfo(StringArray &Names, Array<channelType> &type, Array<int> &stream, Array<int> &originalChannelNumber, Array<float> &gains);
+ void setDefaultNamingScheme(int scheme);
+ void getEventChannelNames(StringArray &names);
+
AudioProcessorEditor* createEditor();
bool hasEditor() const
{
diff --git a/Source/Processors/Editors/SourceNodeEditor.cpp b/Source/Processors/SourceNode/SourceNodeEditor.cpp
similarity index 93%
rename from Source/Processors/Editors/SourceNodeEditor.cpp
rename to Source/Processors/SourceNode/SourceNodeEditor.cpp
index c2c52adda4b5407d7b4ea3f5158d81acb3706a91..808534a3c4aa05d1ceb7e0ad46830113a9139587 100755
--- a/Source/Processors/Editors/SourceNodeEditor.cpp
+++ b/Source/Processors/SourceNode/SourceNodeEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -23,7 +23,7 @@
#include "SourceNodeEditor.h"
-#include "../SourceNode.h"
+#include "../SourceNode/SourceNode.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/SourceNodeEditor.h b/Source/Processors/SourceNode/SourceNodeEditor.h
similarity index 89%
rename from Source/Processors/Editors/SourceNodeEditor.h
rename to Source/Processors/SourceNode/SourceNodeEditor.h
index 8425717a3fa02a8b56d2bb263be31bdf01c1c3ad..f4a94262e8fe999403d82b40048a3d38efff8768 100755
--- a/Source/Processors/Editors/SourceNodeEditor.h
+++ b/Source/Processors/SourceNode/SourceNodeEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,8 +25,8 @@
#define __SOURCENODEEDITOR_H_A1B19E1E__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ImageIcon.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ImageIcon.h"
class ImageIcon;
diff --git a/Source/Processors/SpikeDetector.cpp b/Source/Processors/SpikeDetector/SpikeDetector.cpp
similarity index 84%
rename from Source/Processors/SpikeDetector.cpp
rename to Source/Processors/SpikeDetector/SpikeDetector.cpp
index 534a84734f123d51ddaa8b982365542c9e85952f..2328994d82785c6a654fa41da3b3cc3651e0a992 100755
--- a/Source/Processors/SpikeDetector.cpp
+++ b/Source/Processors/SpikeDetector/SpikeDetector.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -24,7 +24,7 @@
#include <stdio.h>
#include "SpikeDetector.h"
-#include "Channel.h"
+#include "../Channel/Channel.h"
SpikeDetector::SpikeDetector()
: GenericProcessor("Spike Detector"),
@@ -89,7 +89,7 @@ void SpikeDetector::updateSettings()
{
Channel* ch = new Channel(this, i);
- ch->isEventChannel = true;
+ //ch->isEventChannel = true;
ch->eventType = SPIKE_BASE_CODE + electrodes[i]->numChannels;
ch->name = electrodes[i]->name;
@@ -111,7 +111,7 @@ bool SpikeDetector::addElectrode(int nChans)
}
else
{
- Electrode* e = electrodes.getLast();
+ SimpleElectrode* e = electrodes.getLast();
firstChan = *(e->channels+(e->numChannels-1))+1;
}
@@ -138,7 +138,7 @@ bool SpikeDetector::addElectrode(int nChans)
newName += " ";
newName += electrodeCounter[nChans];
- Electrode* newElectrode = new Electrode();
+ SimpleElectrode* newElectrode = new SimpleElectrode();
newElectrode->name = newName;
newElectrode->numChannels = nChans;
@@ -183,7 +183,7 @@ StringArray SpikeDetector::getElectrodeNames()
return names;
}
-void SpikeDetector::resetElectrode(Electrode* e)
+void SpikeDetector::resetElectrode(SimpleElectrode* e)
{
e->lastBufferIndex = 0;
}
@@ -228,19 +228,19 @@ int SpikeDetector::getChannel(int index, int i)
return *(electrodes[index]->channels+i);
}
-Array<Electrode*> SpikeDetector::getElectrodes()
+Array<SimpleElectrode*> SpikeDetector::getElectrodes()
{
return electrodes;
}
-Electrode* SpikeDetector::setCurrentElectrodeIndex(int i)
+SimpleElectrode* SpikeDetector::setCurrentElectrodeIndex(int i)
{
jassert(i >= 0 & i < electrodes.size());
currentElectrode = i;
return electrodes[i];
}
-Electrode* SpikeDetector::getActiveElectrode()
+SimpleElectrode* SpikeDetector::getActiveElectrode()
{
if (electrodes.size() == 0)
return nullptr;
@@ -304,6 +304,7 @@ void SpikeDetector::setParameter(int parameterIndex, float newValue)
bool SpikeDetector::enable()
{
+ sampleRateForElectrode = (uint16_t) getSampleRate();
useOverflowBuffer = false;
return true;
}
@@ -344,7 +345,24 @@ void SpikeDetector::addWaveformToSpikeObject(SpikeObject* s,
int spikeLength = electrodes[electrodeNumber]->prePeakSamples +
+ electrodes[electrodeNumber]->postPeakSamples;
+// uint8_t eventType;
+// int64_t timestamp;
+// int64_t timestamp_software;
+// uint16_t source; // used internally, the index of the electrode in the electrode array
+// uint16_t nChannels;
+// uint16_t nSamples;
+// uint16_t sortedId; // sorted unit ID (or 0 if unsorted)
+// uint16_t electrodeID; // unique electrode ID (regardless electrode position in the array)
+// uint16_t channel; // the channel in which threshold crossing was detected (index in channel array, not absolute channel number).
+// uint8_t color[3];
+// float pcProj[2];
+// uint16_t samplingFrequencyHz;
+// uint16_t data[MAX_NUMBER_OF_SPIKE_CHANNELS* MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES];
+// float gain[MAX_NUMBER_OF_SPIKE_CHANNELS];
+// uint16_t threshold[MAX_NUMBER_OF_SPIKE_CHANNELS];
+
s->timestamp = timestamp + peakIndex;
+
s->nSamples = spikeLength;
@@ -411,7 +429,7 @@ void SpikeDetector::process(AudioSampleBuffer& buffer,
{
// cycle through electrodes
- Electrode* electrode;
+ SimpleElectrode* electrode;
dataBuffer = &buffer;
checkForEvents(events); // need to find any timestamp events before extracting spikes
@@ -432,24 +450,17 @@ void SpikeDetector::process(AudioSampleBuffer& buffer,
// cycle through samples
while (samplesAvailable(nSamples))
{
-
sampleIndex++;
-
-
// cycle through channels
for (int chan = 0; chan < electrode->numChannels; chan++)
{
-
// std::cout << " channel " << chan << std::endl;
-
if (*(electrode->isActive+chan))
{
-
int currentChannel = *(electrode->channels+chan);
if (-getNextSample(currentChannel) > *(electrode->thresholds+chan)) // trigger spike
{
-
//std::cout << "Spike detected on electrode " << i << std::endl;
// find the peak
int peakIndex = sampleIndex;
@@ -463,11 +474,32 @@ void SpikeDetector::process(AudioSampleBuffer& buffer,
peakIndex = sampleIndex;
sampleIndex -= (electrode->prePeakSamples+1);
+
+// uint8_t eventType;
+// int64_t timestamp;
+// int64_t timestamp_software;
+// uint16_t source; // used internally, the index of the electrode in the electrode array
+// uint16_t nChannels;
+// uint16_t nSamples;
+// uint16_t sortedId; // sorted unit ID (or 0 if unsorted)
+// uint16_t electrodeID; // unique electrode ID (regardless electrode position in the array)
+// uint16_t channel; // the channel in which threshold crossing was detected (index in channel array, not absolute channel number).
+// uint8_t color[3];
+// float pcProj[2];
+// uint16_t samplingFrequencyHz;
+// uint16_t data[MAX_NUMBER_OF_SPIKE_CHANNELS* MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES];
+// float gain[MAX_NUMBER_OF_SPIKE_CHANNELS];
+// uint16_t threshold[MAX_NUMBER_OF_SPIKE_CHANNELS];
SpikeObject newSpike;
newSpike.timestamp = peakIndex;
+ newSpike.timestamp_software = -1;
newSpike.source = i;
newSpike.nChannels = electrode->numChannels;
+ newSpike.sortedId = 0;
+ newSpike.electrodeID = 0;
+ newSpike.channel = 0;
+ newSpike.samplingFrequencyHz = sampleRateForElectrode;
currentIndex = 0;
diff --git a/Source/Processors/SpikeDetector.h b/Source/Processors/SpikeDetector/SpikeDetector.h
similarity index 88%
rename from Source/Processors/SpikeDetector.h
rename to Source/Processors/SpikeDetector/SpikeDetector.h
index c84ec682b8962b9cc479a28f0a33d019c45e8a98..8c5292c999f0a475ef3ac5e9b001a866aa0e34bf 100755
--- a/Source/Processors/SpikeDetector.h
+++ b/Source/Processors/SpikeDetector/SpikeDetector.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,12 +26,12 @@
#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/SpikeDetectorEditor.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "SpikeDetectorEditor.h"
-#include "Visualization/SpikeObject.h"
+#include "../Visualization/SpikeObject.h"
-struct Electrode
+struct SimpleElectrode
{
String name;
@@ -136,13 +136,13 @@ public:
StringArray getElectrodeNames();
/** Returns array of electrodes. */
- Array<Electrode*> getElectrodes();
+ Array<SimpleElectrode*> getElectrodes();
/** Returns array of electrodes. */
- Electrode* getActiveElectrode();
+ SimpleElectrode* getActiveElectrode();
/** Sets the current electrode index */
- Electrode* setCurrentElectrodeIndex(int);
+ SimpleElectrode* setCurrentElectrodeIndex(int);
/** Returns a list of possible electrode types (e.g., stereotrode, tetrode). */
StringArray electrodeTypes;
@@ -179,7 +179,7 @@ private:
uint8_t* spikeBuffer;///[256];
int64 timestamp;
- Array<Electrode*> electrodes;
+ Array<SimpleElectrode*> electrodes;
// void createSpikeEvent(int& peakIndex,
// int& electrodeNumber,
@@ -194,7 +194,9 @@ private:
int& electrodeNumber,
int& currentChannel);
- void resetElectrode(Electrode*);
+ void resetElectrode(SimpleElectrode*);
+
+ uint16_t sampleRateForElectrode;
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(SpikeDetector);
diff --git a/Source/Processors/Editors/SpikeDetectorEditor.cpp b/Source/Processors/SpikeDetector/SpikeDetectorEditor.cpp
similarity index 91%
rename from Source/Processors/Editors/SpikeDetectorEditor.cpp
rename to Source/Processors/SpikeDetector/SpikeDetectorEditor.cpp
index da6f70061b6fe3101300ce83c85aa9d57e4374dd..75ca82c4522c76d9bb3316383a8c524484ca74f2 100755
--- a/Source/Processors/Editors/SpikeDetectorEditor.cpp
+++ b/Source/Processors/SpikeDetector/SpikeDetectorEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,8 +22,8 @@
*/
#include "SpikeDetectorEditor.h"
-#include "../SpikeDetector.h"
-#include "ChannelSelector.h"
+#include "SpikeDetector.h"
+#include "../Editors/ChannelSelector.h"
#include "../../UI/EditorViewport.h"
#include <stdio.h>
@@ -332,15 +332,15 @@ void SpikeDetectorEditor::buttonEvent(Button* button)
SpikeDetector* processor = (SpikeDetector*) getProcessor();
- Array<Electrode*> electrodes = processor->getElectrodes();
+ Array<SimpleElectrode*> electrodes = processor->getElectrodes();
for (int i = 0; i < electrodes.size(); i++)
{
- Electrode* e = electrodes[i];
+ SimpleElectrode* e = electrodes[i];
e->isMonitored = false;
}
- Electrode* e = processor->getActiveElectrode();
+ SimpleElectrode* e = processor->getActiveElectrode();
if (e != nullptr)
{
@@ -509,14 +509,16 @@ void SpikeDetectorEditor::comboBoxChanged(ComboBox* comboBox)
{
int ID = comboBox->getSelectedId();
+ std::cout << "ID: " << ID << std::endl;
+
if (ID == 0)
{
- SpikeDetector* processor = (SpikeDetector*) getProcessor();
+ //SpikeDetector* processor = (SpikeDetector*) getProcessor();
- processor->setElectrodeName(lastId, comboBox->getText());
- comboBox->changeItemText(lastId, comboBox->getText());
+ //processor->setElectrodeName(lastId, comboBox->getText());
+ //comboBox->changeItemText(lastId, comboBox->getText());
//electrodeList->setText(comboBox->getText());
- //refreshElectrodeList();
+ refreshElectrodeList();
}
else
@@ -525,7 +527,7 @@ void SpikeDetectorEditor::comboBoxChanged(ComboBox* comboBox)
lastId = ID;
SpikeDetector* processor = (SpikeDetector*) getProcessor();
- Electrode* e = processor->setCurrentElectrodeIndex(ID-1);
+ SimpleElectrode* e = processor->setCurrentElectrodeIndex(ID-1);
electrodeEditorButtons[1]->setToggleState(e->isMonitored, dontSendNotification);
@@ -608,8 +610,8 @@ ThresholdSlider::ThresholdSlider(Font f) : Slider("name"), font(f)
{
setSliderStyle(Slider::Rotary);
- setRange(25.0f,400.0f,5.0f);
- // setValue(75.0f);
+ setRange(-400,400.0f,10.0f);
+ setValue(-20.0f);
setTextBoxStyle(Slider::NoTextBox, false, 40, 20);
}
@@ -667,10 +669,17 @@ Path ThresholdSlider::makeRotaryPath(double min, double max, double val)
Path p;
- double start = 5*double_Pi/4 - 0.11;
-
- double range = (val-min)/(max - min)*1.5*double_Pi + start + 0.22;
-
+ double start;
+ double range;
+ if (val > 0)
+ {
+ start = 0;
+ range = (val)/(1.3*max )*double_Pi ;
+ }
+ if (val < 0) {
+ start = -(val)/(1.3*min)*double_Pi ;
+ range = 0;
+ }
p.addPieSegment(6,6, getWidth()-12, getHeight()-12, start, range, 0.65);
return p;
diff --git a/Source/Processors/Editors/SpikeDetectorEditor.h b/Source/Processors/SpikeDetector/SpikeDetectorEditor.h
similarity index 92%
rename from Source/Processors/Editors/SpikeDetectorEditor.h
rename to Source/Processors/SpikeDetector/SpikeDetectorEditor.h
index 6a4b44cf375a880399d543e32328e2998ec43b8a..919c9642150a99671d870e78de5d6e2a975940d0 100755
--- a/Source/Processors/Editors/SpikeDetectorEditor.h
+++ b/Source/Processors/SpikeDetector/SpikeDetectorEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,8 +26,8 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ElectrodeButtons.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ElectrodeButtons.h"
class TriangleButton;
class UtilityButton;
diff --git a/Source/Processors/Visualization/SpikeDisplayCanvas.cpp b/Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.cpp
similarity index 98%
rename from Source/Processors/Visualization/SpikeDisplayCanvas.cpp
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.cpp
index a2dcf5bda7aef0477cc095b0d6ea53a7b3aeba11..14233600abafe3c209f0251f9be80a82d809cc3f 100755
--- a/Source/Processors/Visualization/SpikeDisplayCanvas.cpp
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -267,7 +267,7 @@ void SpikeDisplayCanvas::loadVisualizerParameters(XmlElement* xml)
// ----------------------------------------------------------------
SpikeDisplay::SpikeDisplay(SpikeDisplayCanvas* sdc, Viewport* v) :
- canvas(sdc), viewport(v), thresholdCoordinator(nullptr), shouldInvert(false)
+ canvas(sdc), viewport(v), shouldInvert(false), thresholdCoordinator(nullptr)
{
totalHeight = 1000;
@@ -486,12 +486,14 @@ float SpikeDisplay::getRangeForWaveAxis(int plotNum, int axisNum)
void SpikeDisplay::setThresholdForWaveAxis(int plotNum, int axisNum, float range)
{
- return spikePlots[plotNum]->setDisplayThresholdForChannel(axisNum, range);
+ if (spikePlots.size() > plotNum)
+ return spikePlots[plotNum]->setDisplayThresholdForChannel(axisNum, range);
}
void SpikeDisplay::setRangeForWaveAxis(int plotNum, int axisNum, float range)
{
- return spikePlots[plotNum]->setRangeForChannel(axisNum, range);
+ if (spikePlots.size() > plotNum)
+ return spikePlots[plotNum]->setRangeForChannel(axisNum, range);
}
// ----------------------------------------------------------------
@@ -882,7 +884,7 @@ WaveAxes::WaveAxes(int channel) : GenericAxes(channel),
for (int n = 0; n < bufferSize; n++)
{
SpikeObject so;
- generateEmptySpike(&so, 4);
+ generateEmptySpike(&so, 4, 40);
spikeBuffer.add(so);
}
@@ -1087,7 +1089,7 @@ void WaveAxes::clear()
for (int n = 0; n < bufferSize; n++)
{
SpikeObject so;
- generateEmptySpike(&so, 4);
+ generateEmptySpike(&so, 4, 40);
spikeBuffer.add(so);
}
diff --git a/Source/Processors/Visualization/SpikeDisplayCanvas.h b/Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.h
similarity index 98%
rename from Source/Processors/Visualization/SpikeDisplayCanvas.h
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.h
index 2a1f6e33a1991b667e307e1f69bac0a4fce725b9..78bfc189978b29bf065db5f74f53b020da0af19a 100755
--- a/Source/Processors/Visualization/SpikeDisplayCanvas.h
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,10 +26,10 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../SpikeDisplayNode.h"
-#include "SpikeObject.h"
+#include "SpikeDisplayNode.h"
+#include "../Visualization/SpikeObject.h"
-#include "Visualizer.h"
+#include "../Visualization/Visualizer.h"
#include <vector>
#define WAVE1 0
diff --git a/Source/Processors/Editors/SpikeDisplayEditor.cpp b/Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.cpp
similarity index 99%
rename from Source/Processors/Editors/SpikeDisplayEditor.cpp
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.cpp
index 17bc397322b92b7d23263fe594d2ba24a3c606cf..8444f842e2d7d50f49915c5d26f48be2a0069804 100755
--- a/Source/Processors/Editors/SpikeDisplayEditor.cpp
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/SpikeDisplayEditor.h b/Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.h
similarity index 92%
rename from Source/Processors/Editors/SpikeDisplayEditor.h
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.h
index e8b6294df825e9122864772313af42cdc5075b40..8bf9df9ef876c175adb200d11da1cb095c315666 100755
--- a/Source/Processors/Editors/SpikeDisplayEditor.h
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,13 +25,13 @@
#define SPIKEDISPLAYEDITOR_H_
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
#include "../../UI/UIComponent.h"
#include "../../UI/DataViewport.h"
#include "../Visualization/DataWindow.h"
-#include "../SpikeDisplayNode.h"
-#include "../Visualization/SpikeDisplayCanvas.h"
-#include "VisualizerEditor.h"
+#include "SpikeDisplayNode.h"
+#include "SpikeDisplayCanvas.h"
+#include "../Editors/VisualizerEditor.h"
#define MAX_N_SUB_CHAN 8
class Visualizer;
diff --git a/Source/Processors/SpikeDisplayNode.cpp b/Source/Processors/SpikeDisplayNode/SpikeDisplayNode.cpp
similarity index 60%
rename from Source/Processors/SpikeDisplayNode.cpp
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayNode.cpp
index acad76c45a52e01186c98a093ee21bfd7d7bbecd..4502ea5fae2bdfe396d75662833e774c2c69f895 100755
--- a/Source/Processors/SpikeDisplayNode.cpp
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayNode.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,23 +22,19 @@
*/
#include "SpikeDisplayNode.h"
-#include "RecordNode.h"
-#include "Visualization/SpikeDisplayCanvas.h"
-#include "Channel.h"
+#include "../RecordNode/RecordNode.h"
+#include "SpikeDisplayCanvas.h"
+#include "../Channel/Channel.h"
#include <stdio.h>
SpikeDisplayNode::SpikeDisplayNode()
- : GenericProcessor("Spike Viewer"), displayBufferSize(5), redrawRequested(false), isRecording(false),
- signalFilesShouldClose(false)
+ : GenericProcessor("Spike Viewer"), displayBufferSize(5), redrawRequested(false),
+ isRecording(false)
{
- spikeBuffer = new uint8_t[MAX_SPIKE_BUFFER_LEN]; // MAX_SPIKE_BUFFER_LEN defined in SpikeObject.h
-
- recordingNumber = -1;
-
}
SpikeDisplayNode::~SpikeDisplayNode()
@@ -60,7 +56,6 @@ void SpikeDisplayNode::updateSettings()
//std::cout << "Setting num inputs on SpikeDisplayNode to " << getNumInputs() << std::endl;
electrodes.clear();
-
for (int i = 0; i < eventChannels.size(); i++)
{
if ((eventChannels[i]->eventType < 999) && (eventChannels[i]->eventType > SPIKE_BASE_CODE))
@@ -79,12 +74,10 @@ void SpikeDisplayNode::updateSettings()
}
electrodes.add(elec);
+
}
}
- recordNode = getProcessorGraph()->getRecordNode();
- diskWriteLock = recordNode->getLock();
-
}
// void SpikeDisplayNode::updateVisualizer()
@@ -96,6 +89,18 @@ bool SpikeDisplayNode::enable()
{
std::cout << "SpikeDisplayNode::enable()" << std::endl;
SpikeDisplayEditor* editor = (SpikeDisplayEditor*) getEditor();
+
+ getProcessorGraph()->getRecordNode()->registerSpikeSource(this);
+ for (int i = 0; i < electrodes.size(); i ++)
+ {
+ Electrode& elec = electrodes.getReference(i);
+ SpikeRecordInfo *recElec = new SpikeRecordInfo();
+ recElec->name = elec.name;
+ recElec->numChannels = elec.numChannels;
+ recElec->sampleRate = settings.sampleRate;
+ elec.recordIndex = getProcessorGraph()->getRecordNode()->addSpikeElectrode(recElec);
+ }
+
editor->enable();
return true;
@@ -175,28 +180,12 @@ void SpikeDisplayNode::setParameter(int param, float val)
if (param == 0) // stop recording
{
isRecording = false;
- signalFilesShouldClose = true;
}
else if (param == 1) // start recording
{
isRecording = true;
- dataDirectory = recordNode->getDataDirectory();
-
- if (dataDirectory.getFullPathName().length() == 0)
- {
- // temporary fix in case nothing is returned by the record node.
- dataDirectory = File::getSpecialLocation(File::userHomeDirectory);
- }
-
- baseDirectory = dataDirectory.getFullPathName();
-
- for (int i = 0; i < getNumElectrodes(); i++)
- {
- openFile(i);
- }
-
}
else if (param == 2) // redraw
{
@@ -213,16 +202,6 @@ void SpikeDisplayNode::process(AudioSampleBuffer& buffer, MidiBuffer& events, in
checkForEvents(events); // automatically calls 'handleEvent
- if (signalFilesShouldClose)
- {
- for (int i = 0; i < getNumElectrodes(); i++)
- {
- closeFile(i);
- }
-
- signalFilesShouldClose = false;
- }
-
if (redrawRequested)
{
// update incoming thresholds
@@ -304,7 +283,7 @@ void SpikeDisplayNode::handleEvent(int eventType, MidiMessage& event, int sample
// save spike
if (isRecording)
{
- writeSpike(newSpike, electrodeNum);
+ getProcessorGraph()->getRecordNode()->writeSpike(newSpike,e.recordIndex);
}
}
@@ -333,139 +312,3 @@ bool SpikeDisplayNode::checkThreshold(int chan, float thresh, SpikeObject& s)
return false;
}
-
-void SpikeDisplayNode::openFile(int i)
-{
-
- String filename = baseDirectory;
- filename += File::separator;
- filename += getNameForElectrode(i).removeCharacters(" ");
- filename += ".spikes";
-
- std::cout << "OPENING FILE: " << filename << std::endl;
-
- File fileToUse = File(filename);
-
- diskWriteLock->enter();
- //const MessageManagerLock mmLock;
-
- Electrode& e = electrodes.getReference(i);
-
- FILE* file;
-
- if (!fileToUse.exists())
- {
- // open it and write header
-
- if (i == 0)
- {
- recordingNumber = 0;
- }
-
- file = fopen(filename.toUTF8(), "ab");
- String header = generateHeader(i);
- fwrite(header.toUTF8(), 1, header.getNumBytesAsUTF8(), file);
-
- }
- else
- {
- // append it
- if (i == 0)
- {
- recordingNumber++;
- }
-
- file = fopen(filename.toUTF8(), "ab");
- }
-
- diskWriteLock->exit();
-
- e.file = file;
-}
-
-void SpikeDisplayNode::closeFile(int i)
-{
-
- Electrode& e = electrodes.getReference(i);
-
- std::cout << "CLOSING FILE for " << e.name << std::endl;
-
- diskWriteLock->enter();
-
- if (e.file != NULL)
- {
- fclose(e.file);
- }
-
- diskWriteLock->exit();
-
-}
-
-void SpikeDisplayNode::writeSpike(const SpikeObject& s, int i)
-{
-
- packSpike(&s, spikeBuffer, MAX_SPIKE_BUFFER_LEN);
-
- int totalBytes = s.nSamples * s.nChannels * 2 + // account for samples
- s.nChannels * 4 + // acount for threshold and gain
- 15; // 15 bytes in every SpikeObject
-
-
- // format:
- // 1 byte of event type (always = 4 for spikes)
- // 8 bytes for 64-bit timestamp
- // 2 bytes for 16-bit electrode ID
- // 2 bytes for 16-bit number of channels (n)
- // 2 bytes for 16-bit number of samples (m)
- // 2*n*m bytes for 16-bit samples
- // 2*n bytes for 16-bit gains
- // 2*n bytes for 16-bit thresholds
-
- // const MessageManagerLock mmLock;
-
- diskWriteLock->enter();
-
- fwrite(spikeBuffer, 1, totalBytes, electrodes[i].file);
-
- fwrite(&recordingNumber, // ptr
- 2, // size of each element
- 1, // count
- electrodes[i].file); // ptr to FILE object
-
- diskWriteLock->exit();
-
-
-}
-
-String SpikeDisplayNode::generateHeader(int electrodeNum)
-{
- String header = "header.format = 'Open Ephys Data Format'; \n";
- header += "header.version = 0.2;";
- header += "header.header_bytes = ";
- header += String(HEADER_SIZE);
- header += ";\n";
-
- header += "header.description = 'Each record contains 1 uint8 eventType, 1 uint64 timestamp, 1 uint16 electrodeID, 1 uint16 numChannels (n), 1 uint16 numSamples (m), n*m uint16 samples, n uint16 channelGains, n uint16 thresholds, and 1 uint16 recordingNumber'; \n";
-
- header += "header.date_created = '";
- header += recordNode->generateDateString();
- header += "';\n";
-
- header += "header.electrode = '";
- header += electrodes[electrodeNum].name;
- header += "';\n";
-
- header += "header.num_channels = ";
- header += electrodes[electrodeNum].numChannels;
- header += ";\n";
-
- header += "header.sampleRate = ";
- header += String(settings.sampleRate);
- header += ";\n";
-
- header = header.paddedRight(' ', HEADER_SIZE);
-
- //std::cout << header << std::endl;
-
- return header;
-}
\ No newline at end of file
diff --git a/Source/Processors/SpikeDisplayNode.h b/Source/Processors/SpikeDisplayNode/SpikeDisplayNode.h
similarity index 80%
rename from Source/Processors/SpikeDisplayNode.h
rename to Source/Processors/SpikeDisplayNode/SpikeDisplayNode.h
index cbd08ce92b51b858b2662286e46806c1a6251b06..2b630f7cd528e69656aa4eda757d92423435ef66 100755
--- a/Source/Processors/SpikeDisplayNode.h
+++ b/Source/Processors/SpikeDisplayNode/SpikeDisplayNode.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,10 +25,10 @@
#define SPIKEDISPLAYNODE_H_
#include "../../JuceLibraryCode/JuceHeader.h"
-#include "Editors/SpikeDisplayEditor.h"
-#include "Editors/VisualizerEditor.h"
-#include "GenericProcessor.h"
-#include "Visualization/SpikeObject.h"
+#include "SpikeDisplayEditor.h"
+#include "../Editors/VisualizerEditor.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "../Visualization/SpikeObject.h"
class DataViewport;
class SpikePlot;
@@ -95,7 +95,7 @@ private:
SpikePlot* spikePlot;
- FILE* file;
+ int recordIndex;
};
@@ -104,24 +104,18 @@ private:
int displayBufferSize;
bool redrawRequested;
- // methods for recording:
- void openFile(int index);
- void closeFile(int index);
- void writeSpike(const SpikeObject& s, int index);
- String generateHeader(int index);
-
// members for recording
bool isRecording;
- bool signalFilesShouldClose;
- RecordNode* recordNode;
- String baseDirectory;
- File dataDirectory;
- uint8_t* spikeBuffer;
- SpikeObject currentSpike;
+ // bool signalFilesShouldClose;
+ // RecordNode* recordNode;
+ // String baseDirectory;
+ // File dataDirectory;
+ // uint8_t* spikeBuffer;
+ // SpikeObject currentSpike;
- uint16 recordingNumber;
+ // uint16 recordingNumber;
- CriticalSection* diskWriteLock;
+// CriticalSection* diskWriteLock;
JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(SpikeDisplayNode);
diff --git a/Source/Processors/SpikeSorter/SpikeSortBoxes.cpp b/Source/Processors/SpikeSorter/SpikeSortBoxes.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..6689fedadf6b6d167aca8c9c8231c310c05d96df
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSortBoxes.cpp
@@ -0,0 +1,2139 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2013 Open Ephys
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include <stdio.h>
+#include <algorithm>
+#include "SpikeSortBoxes.h"
+#include "SpikeSorter.h"
+
+PointD::PointD()
+{
+ X = Y = 0;
+}
+
+
+PointD::PointD(float x, float y)
+{
+ X = x;
+ Y = y;
+}
+
+PointD::PointD(const PointD &P)
+{
+ X = P.X;
+ Y = P.Y;
+}
+
+PointD& PointD::operator+=(const PointD &rhs)
+{
+ X += rhs.X;
+ Y += rhs.Y;
+ return *this;
+}
+
+PointD& PointD::operator-=(const PointD &rhs)
+{
+ X -= rhs.X;
+ Y -= rhs.Y;
+ return *this;
+}
+
+const PointD PointD::operator+(const PointD &other) const
+{
+ PointD result = *this;
+ result += other;
+ return result;
+}
+
+
+const PointD PointD::operator-(const PointD &other) const
+{
+ PointD result = *this;
+ result -= other;
+ return result;
+}
+
+
+const PointD PointD::operator*(const PointD &other) const
+{
+ PointD result = *this;
+ result.X *= other.X;
+ result.Y *= other.Y;
+ return result;
+
+}
+
+float PointD::cross(PointD c) const
+{
+ return X*c.Y-Y*c.X;
+}
+
+/**************************************/
+
+
+Box::Box()
+{
+ x = -0.2; // in ms
+ y = -10; // in uV
+ w = 0.5; // in ms
+ h = 70; // in uV
+ channel=0;
+}
+
+
+Box::Box(int ch)
+{
+ x = -0.2; // in ms
+ y = -10; // in uV
+ w = 0.5; // in ms
+ h = 70; // in uV
+ channel = ch;
+}
+
+Box::Box(float X, float Y, float W, float H, int ch)
+{
+ x = X;
+ y = Y;
+ w = W;
+ h = H;
+ channel = ch;
+}
+
+bool Box::LineSegmentIntersection(PointD p11, PointD p12, PointD p21, PointD p22)
+{
+ PointD r = (p12 - p11);
+ PointD s = (p22 - p21);
+ PointD q = p21;
+ PointD p = p11;
+ double rs = r.cross(s);
+ double eps = 1e-6;
+ if (fabs(rs) < eps)
+ return false; // lines are parallel
+ double t = (q - p).cross(s) / rs;
+ double u = (q - p).cross(r) / rs;
+ return (t>=0&&t<=1 &&u>0&&u<=1);
+}
+
+#ifndef MAX
+#define MAX(x,y)((x)>(y))?(x):(y)
+#endif
+
+#ifndef MIN
+#define MIN(x,y)((x)<(y))?(x):(y)
+#endif
+
+bool Box::isWaveFormInside(SpikeObject *so)
+{
+ PointD BoxTopLeft(x, y);
+ PointD BoxBottomLeft(x, (y - h));
+
+ PointD BoxTopRight(x + w, y);
+ PointD BoxBottomRight(x + w, (y - h));
+
+ // y,and h are given in micro volts.
+ // x and w and given in micro seconds.
+
+ // no point testing all wave form points. Just ones that are between x and x+w...
+ int BinLeft = microSecondsToSpikeTimeBin(so,x);
+ int BinRight = microSecondsToSpikeTimeBin(so,x+w);
+
+ /*
+ float minValue=1e10, maxValue=1e-10;
+ for (int pt = 0; pt < so->nSamples; pt++)
+ {
+ float v = spikeDataBinToMicrovolts(so, pt, channel);
+ minValue = MIN(minValue,v);
+ maxValue = MAX(maxValue,v);
+ }
+ */
+
+ for (int pt = BinLeft; pt < BinRight; pt++)
+ {
+ PointD Pwave1(spikeTimeBinToMicrosecond(so,pt),spikeDataBinToMicrovolts(so, pt, channel));
+ PointD Pwave2(spikeTimeBinToMicrosecond(so,pt+1),spikeDataBinToMicrovolts(so, pt+1, channel));
+
+ bool bLeft = LineSegmentIntersection(Pwave1,Pwave2,BoxTopLeft,BoxBottomLeft) ;
+ bool bRight = LineSegmentIntersection(Pwave1,Pwave2,BoxTopRight,BoxBottomRight);
+ bool bTop = LineSegmentIntersection(Pwave1,Pwave2,BoxTopLeft,BoxTopRight);
+ bool bBottom = LineSegmentIntersection(Pwave1, Pwave2, BoxBottomLeft, BoxBottomRight);
+ if (bLeft || bRight || bTop || bBottom)
+ {
+ return true;
+ }
+
+ }
+ return false;
+}
+
+
+BoxUnit::BoxUnit()
+{
+
+}
+/**************************************/
+void BoxUnit::setDefaultColors(uint8_t col[3], int ID)
+{
+ int IDmodule = (ID-1) % 6; // ID can't be zero
+ const int colors[6][3] = {
+ {0xFF,0xFF,0x00},
+ {0x00,0xFF,0x00},
+ {0x00, 0xFF, 0xFF},
+ {0xFF, 0x00, 0x00},
+ {0x00,0x00,0xFF},
+ {0xFF,0x00,0xFF}};
+ col[0] = colors[IDmodule][0];
+ col[1] = colors[IDmodule][1];
+ col[2] = colors[IDmodule][2];
+}
+
+BoxUnit::BoxUnit(int ID, int localID_): UnitID(ID), localID(localID_)
+{
+ std::cout << "Adding new box unit." << std::endl;
+ Active = false;
+ Activated_TS_S = -1;
+ setDefaultColors(ColorRGB, localID);
+ Box B(50, -20 - localID*20, 300, 40);
+ addBox(B);
+}
+
+void BoxUnit::resizeWaveform(int newlength)
+{
+ WaveformStat.resizeWaveform(newlength);
+}
+
+BoxUnit::BoxUnit(Box B, int ID, int localID_) : UnitID(ID), localID(localID_)
+{
+ addBox(B);
+}
+
+bool BoxUnit::isWaveFormInsideAllBoxes(SpikeObject *so)
+{
+ for (int k=0;k< lstBoxes.size();k++)
+ {
+ if (!lstBoxes[k].isWaveFormInside(so))
+ return false;
+ }
+ return lstBoxes.size() == 0 ? false : true;
+}
+
+bool BoxUnit::isActivated()
+{
+ return Active;
+}
+
+void BoxUnit::activateUnit()
+{
+ Active = true;
+ Activated_TS_S = timer.getHighResolutionTicks();
+}
+
+void BoxUnit::deactivateUnit()
+{
+ Active = false;
+ Activated_TS_S = timer.getHighResolutionTicks();
+
+}
+
+double BoxUnit::getNumSecondsActive()
+{
+ if (!Active)
+ return 0;
+ else
+ return (timer.getHighResolutionTicks() - Activated_TS_S) / timer.getHighResolutionTicksPerSecond();
+}
+
+void BoxUnit::toggleActive()
+{
+ if (Active)
+ deactivateUnit();
+ else
+ activateUnit();
+}
+
+void BoxUnit::addBox(Box b)
+{
+ lstBoxes.push_back(b);
+}
+
+void BoxUnit::addBox()
+{
+ Box B(50 + 350 * lstBoxes.size(), -20 - UnitID * 20, 300, 40);
+ lstBoxes.push_back(B);
+}
+
+int BoxUnit::getNumBoxes()
+{
+ return lstBoxes.size();
+}
+
+void BoxUnit::modifyBox(int boxindex, Box b)
+{
+ lstBoxes[boxindex] = b;
+}
+
+
+bool BoxUnit::deleteBox(int boxindex)
+{
+
+ if (lstBoxes.size() > boxindex) {
+ lstBoxes.erase(lstBoxes.begin()+boxindex);
+ return true;
+ }
+ return false;
+}
+
+Box BoxUnit::getBox(int box)
+{
+ return lstBoxes[box];
+}
+
+void BoxUnit::setBox(int boxid, Box B)
+{
+ lstBoxes[boxid].x = B.x;
+ lstBoxes[boxid].y = B.y;
+ lstBoxes[boxid].w = B.w;
+ lstBoxes[boxid].h = B.h;
+}
+
+
+void BoxUnit::setBoxPos(int boxid, PointD P)
+{
+ lstBoxes[boxid].x = P.X;
+ lstBoxes[boxid].y = P.Y;
+}
+
+void BoxUnit::setBoxSize(int boxid, double W, double H)
+{
+ lstBoxes[boxid].w = W;
+ lstBoxes[boxid].h = H;
+}
+
+void BoxUnit::MoveBox(int boxid, int dx, int dy)
+{
+ lstBoxes[boxid].x += dx;
+ lstBoxes[boxid].y += dy;
+}
+
+std::vector<Box> BoxUnit::getBoxes()
+{
+ return lstBoxes;
+}
+
+// Members
+int BoxUnit::getUnitID()
+{
+ return UnitID;
+}
+
+int BoxUnit::getLocalID()
+{
+ return localID;
+}
+
+
+/************************/
+
+Histogram::~Histogram()
+{
+ Time.clear();
+ Counter.clear();
+}
+
+Histogram::Histogram()
+{
+
+}
+
+void Histogram::setParameters(int N, double T0, double T1)
+{
+
+ t0 = T0;
+ t1 = T1;
+ numBins = N;
+ Time.resize(N);
+ Counter.resize(N);
+ for (int k = 0; k < N; k++)
+ {
+ Time[k] = (double)k / (N - 1) * (T1 - T0) + T0;
+ Counter[k] = 0;
+ }
+}
+
+Histogram::Histogram(int N, double T0, double T1)
+{
+ t0 = T0;
+ t1 = T1;
+ numBins = N;
+ Time.resize(N);
+ Counter.resize(N);
+ for (int k = 0; k < N; k++)
+ {
+ Time[k] = (double)k / (N - 1) * (T1 - T0) + T0;
+ Counter[k] = 0;
+ }
+}
+
+void Histogram::update(double x) {
+ int Bin = ((x - t0) / (t1 - t0) * (numBins-1));
+ if (Bin >= 0 && Bin < numBins)
+ {
+ Counter[Bin]++;
+ if (Counter[Bin] > Max)
+ {
+ Max = Counter[Bin];
+ }
+ }
+}
+
+void Histogram::reset()
+{
+ Max = 0;
+ for (int k = 0; k < numBins; k++)
+ Counter[k] = 0;
+}
+
+std::vector<int> Histogram::getCounter()
+{
+ return Counter;
+}
+
+
+/**********************/
+// computes statistics about the unit (non-trial related statistics)
+
+
+
+// Running variance...
+//Mk = Mk-1+ (xk - Mk-1)/k
+//Sk = Sk-1 + (xk - Mk-1)*(xk - Mk).
+//For 2 ≤ k ≤ n, the kth estimate of the variance is s2 = Sk/(k - 1).
+RunningStats::~RunningStats()
+{
+}
+RunningStats::RunningStats()
+{
+ hist.setParameters(101, 0, 100); // Inter spike histogram. Fixed range [0..100 ms]
+ numSamples = 0;
+}
+
+void RunningStats::reset()
+{
+ numSamples = 0;
+ hist.reset();
+}
+
+Histogram RunningStats::getHistogram()
+{
+ return hist;
+}
+
+std::vector<double> RunningStats::getMean(int index)
+{
+ std::vector<double> m;
+
+ if (numSamples == 0)
+ {
+ return m;
+ }
+
+ int numSamplesInWaveForm = WaveFormMean[0].size();
+ m.resize(numSamplesInWaveForm);
+
+ for (int k = 0; k < numSamplesInWaveForm; k++)
+ m[k] = WaveFormMean[index][k];
+ return m;
+}
+
+std::vector<double> RunningStats::getStandardDeviation(int index)
+{
+ std::vector<double> WaveFormVar;
+
+ if (numSamples == 0)
+ {
+ return WaveFormVar;
+ }
+ int numSamplesInWaveForm = WaveFormMean[0].size();
+ WaveFormVar.resize(numSamplesInWaveForm);
+
+ for (int j = 0; j < numSamplesInWaveForm; j++)
+ {
+ if (numSamples - 1 == 0)
+ WaveFormVar[j] = 0;
+ else
+ WaveFormVar[j] = sqrt(WaveFormSk[index][j] / (numSamples - 1));
+ }
+ return WaveFormVar;
+}
+
+
+void RunningStats::resizeWaveform(int newlength)
+{
+ numSamples = 0; // this should ensure that update reallocates upon the next update.
+}
+
+void RunningStats::update(SpikeObject *so)
+{
+ double ts = so->timestamp/so->samplingFrequencyHz;
+ if (numSamples == 0)
+ {
+ LastSpikeTime = ts;
+ }
+ else
+ {
+ hist.update(1000.0 * (ts - LastSpikeTime));
+ LastSpikeTime = ts;
+ }
+
+ newData = true;
+ if (numSamples == 0)
+ {
+ // allocate
+ WaveFormMean.resize(so->nChannels);
+ WaveFormSk.resize(so->nChannels);
+ WaveFormMk.resize(so->nChannels);
+ for (int k=0;k<so->nChannels;k++)
+ {
+ WaveFormMean[k].resize(so->nSamples);
+ WaveFormSk[k].resize(so->nSamples);
+ WaveFormMk[k].resize(so->nSamples);
+ }
+
+ for (int i = 0; i < so->nChannels; i++)
+ {
+ for (int j = 0; j < so->nSamples; j++)
+ {
+ WaveFormMean[i][j] = so->data[j + i*so->nSamples];
+ WaveFormSk[i][j] = 0;
+ WaveFormMk[i][j] = so->data[j + i*so->nSamples];
+ }
+ }
+ numSamples += 1.0F;
+ return;
+ }
+ // running mean
+ for (int i = 0; i < so->nChannels; i++)
+ {
+ for (int j = 0; j < so->nSamples; j++)
+ {
+ WaveFormMean[i][j] = (numSamples * WaveFormMean[i][j] + so->data[j + i*so->nSamples]) / (numSamples + 1);
+ WaveFormMk[i][j] += (so->data[j + i*so->nSamples] - WaveFormMk[i][j]) / numSamples;
+ WaveFormSk[i][j] += (so->data[j + i*so->nSamples] - WaveFormMk[i][j]) * (so->data[j + i*so->nSamples] - WaveFormMk[i][j]);
+ }
+ }
+ numSamples += 1.0F;
+}
+
+
+bool RunningStats::queryNewData()
+{
+ if (newData == false)
+ return false;
+ newData = false;
+ return true;
+}
+
+void BoxUnit::updateWaveform(SpikeObject *so)
+{
+ WaveformStat.update(so);
+}
+
+
+/*
+ public bool QueryNewData()
+ {
+ return WaveFormStat.QueryNewData();
+ }
+
+ public Histogram GetInterSpikeHistogram()
+ {
+ return WaveFormStat.GetHistogram();
+ }
+
+ public void GetWaveFormMeanStd(out double[] Mean, out double[] Std, int index)
+ {
+ Mean = WaveFormStat.GetMean(index);
+ Std = WaveFormStat.GetStandardDeviation(index);
+ }
+
+ public void ResetWaveForm()
+ {
+ WaveFormStat.Reset();
+ }
+
+
+ }
+ */
+
+/***********************************************/
+
+ SpikeSortBoxes::SpikeSortBoxes(UniqueIDgenerator *uniqueIDgenerator_,PCAcomputingThread *pth, int numch, double SamplingRate, int WaveFormLength)
+ {
+ uniqueIDgenerator = uniqueIDgenerator_;
+ computingThread = pth;
+ pc1 = pc2 = nullptr;
+ bufferSize = 200;
+ spikeBufferIndex = -1;
+ bPCAcomputed = false;
+ bPCAJobSubmitted = false;
+ bPCAjobFinished = false;
+ selectedUnit = -1;
+ selectedBox = -1;
+ bRePCA = false;
+ pc1min = -1;
+ pc2min = -1;
+ pc1max = 1;
+ pc2max = 1;
+ numChannels = numch;
+ waveformLength = WaveFormLength;
+
+ pc1 = new float[numChannels * waveformLength];
+ pc2 = new float[numChannels * waveformLength];
+ for (int n = 0; n < bufferSize; n++)
+ {
+ SpikeObject so;
+ generateEmptySpike(&so, 4,waveformLength);
+
+ spikeBuffer.add(so);
+ }
+ }
+
+ void SpikeSortBoxes::resizeWaveform(int numSamples)
+ {
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ waveformLength = numSamples;
+ delete pc1;
+ delete pc2;
+ pc1 = new float[numChannels * waveformLength];
+ pc2 = new float[numChannels * waveformLength];
+ spikeBuffer.clear();
+ for (int n = 0; n < bufferSize; n++)
+ {
+ SpikeObject so;
+ generateEmptySpike(&so, 4,waveformLength);
+ spikeBuffer.add(so);
+ }
+ bPCAcomputed = false;
+ spikeBufferIndex = 0;
+ for (int k=0;k<pcaUnits.size();k++)
+ {
+ pcaUnits[k].resizeWaveform(waveformLength);
+ }
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ boxUnits[k].resizeWaveform(waveformLength);
+ }
+ //EndCriticalSection();
+ }
+
+
+
+ void SpikeSortBoxes::loadCustomParametersFromXml(XmlElement *electrodeNode)
+ {
+
+ forEachXmlChildElement(*electrodeNode, spikesortNode)
+ {
+ if (spikesortNode->hasTagName("SPIKESORTING"))
+ {
+ int numBoxUnit = spikesortNode->getIntAttribute("numBoxUnits");
+ int numPCAUnit = spikesortNode->getIntAttribute("numPCAUnits");
+ selectedUnit = spikesortNode->getIntAttribute("selectedUnit");
+ selectedBox = spikesortNode->getIntAttribute("selectedBox");
+
+
+ pcaUnits.clear();
+ boxUnits.clear();
+
+ forEachXmlChildElement(*spikesortNode, UnitNode)
+ {
+ if (UnitNode->hasTagName("PCA"))
+ {
+ numChannels = UnitNode->getIntAttribute("numChannels");
+ waveformLength = UnitNode->getIntAttribute("waveformLength");
+
+ pc1min = UnitNode->getDoubleAttribute("pc1min");
+ pc2min = UnitNode->getDoubleAttribute("pc2min");
+ pc1max = UnitNode->getDoubleAttribute("pc1max");
+ pc2max = UnitNode->getDoubleAttribute("pc2max");
+
+ bPCAjobFinished = UnitNode->getBoolAttribute("PCAjobFinished");
+ bPCAcomputed = UnitNode->getBoolAttribute("PCAcomputed");
+
+ delete(pc1);
+ delete(pc2);
+
+ pc1 = new float[waveformLength*numChannels];
+ pc2 = new float[waveformLength*numChannels];
+ int dimcounter = 0;
+ forEachXmlChildElement(*UnitNode, dimNode)
+ {
+ if (dimNode->hasTagName("PCA_DIM"))
+ {
+ pc1[dimcounter]=dimNode->getDoubleAttribute("pc1");
+ pc2[dimcounter]=dimNode->getDoubleAttribute("pc2");
+ dimcounter++;
+ }
+ }
+ }
+
+ if (UnitNode->hasTagName("BOXUNIT"))
+ {
+ BoxUnit boxUnit;
+ boxUnit.UnitID = UnitNode->getIntAttribute("UnitID");
+ boxUnit.ColorRGB[0] = UnitNode->getIntAttribute("ColorR");
+ boxUnit.ColorRGB[1] = UnitNode->getIntAttribute("ColorG");
+ boxUnit.ColorRGB[2] = UnitNode->getIntAttribute("ColorB");
+ int numBoxes = UnitNode->getIntAttribute("NumBoxes");
+ boxUnit.lstBoxes.resize(numBoxes);
+ int boxCounter = 0;
+ forEachXmlChildElement(*UnitNode, boxNode)
+ {
+ if (boxNode->hasTagName("BOX"))
+ {
+ Box box;
+ box.channel = boxNode->getIntAttribute("ch");
+ box.x = boxNode->getDoubleAttribute("x");
+ box.y = boxNode->getDoubleAttribute("y");
+ box.w = boxNode->getDoubleAttribute("w");
+ box.h = boxNode->getDoubleAttribute("h");
+ boxUnit.lstBoxes[boxCounter++] = box;
+ }
+ }
+ // add box unit
+ boxUnits.push_back(boxUnit);
+ }
+ if (UnitNode->hasTagName("PCAUNIT"))
+ {
+ PCAUnit pcaUnit;
+
+ pcaUnit.UnitID = UnitNode->getIntAttribute("UnitID");
+ pcaUnit.ColorRGB[0] = UnitNode->getIntAttribute("ColorR");
+ pcaUnit.ColorRGB[1] = UnitNode->getIntAttribute("ColorG");
+ pcaUnit.ColorRGB[2] = UnitNode->getIntAttribute("ColorB");
+
+ int numPolygonPoints = UnitNode->getIntAttribute("PolygonNumPoints");
+ pcaUnit.poly.pts.resize(numPolygonPoints);
+ pcaUnit.poly.offset.X = UnitNode->getDoubleAttribute("PolygonOffsetX");
+ pcaUnit.poly.offset.Y = UnitNode->getDoubleAttribute("PolygonOffsetY");
+ // read polygon
+ int pointCounter = 0;
+ forEachXmlChildElement(*UnitNode, polygonPoint)
+ {
+ if (polygonPoint->hasTagName("POLYGON_POINT"))
+ {
+ pcaUnit.poly.pts[pointCounter].X = polygonPoint->getDoubleAttribute("pointX");
+ pcaUnit.poly.pts[pointCounter].Y = polygonPoint->getDoubleAttribute("pointY");
+ pointCounter++;
+ }
+ }
+ // add polygon unit
+ pcaUnits.push_back(pcaUnit);
+ }
+ }
+ }
+ }
+ }
+
+ void SpikeSortBoxes::saveCustomParametersToXml(XmlElement *electrodeNode)
+ {
+
+ XmlElement* spikesortNode = electrodeNode->createNewChildElement("SPIKESORTING");
+ spikesortNode->setAttribute("numBoxUnits", (int)boxUnits.size());
+ spikesortNode->setAttribute("numPCAUnits", (int)pcaUnits.size());
+ spikesortNode->setAttribute("selectedUnit",selectedUnit);
+ spikesortNode->setAttribute("selectedBox",selectedBox);
+
+
+ XmlElement* pcaNode = electrodeNode->createNewChildElement("PCA");
+ pcaNode->setAttribute("numChannels",numChannels);
+ pcaNode->setAttribute("waveformLength",waveformLength);
+ pcaNode->setAttribute("pc1min", pc1min);
+ pcaNode->setAttribute("pc2min", pc2min);
+ pcaNode->setAttribute("pc1max", pc1max);
+ pcaNode->setAttribute("pc2max", pc2max);
+
+ pcaNode->setAttribute("PCAjobFinished", bPCAjobFinished);
+ pcaNode->setAttribute("PCAcomputed", bPCAcomputed);
+
+ for (int k=0;k<numChannels*waveformLength;k++)
+ {
+ XmlElement* dimNode = pcaNode->createNewChildElement("PCA_DIM");
+ dimNode->setAttribute("pc1",pc1[k]);
+ dimNode->setAttribute("pc2",pc2[k]);
+ }
+
+ for (int boxUnitIter=0;boxUnitIter<boxUnits.size();boxUnitIter++)
+ {
+ XmlElement* BoxUnitNode = spikesortNode->createNewChildElement("BOXUNIT");
+
+ BoxUnitNode->setAttribute("UnitID",boxUnits[boxUnitIter].UnitID);
+ BoxUnitNode->setAttribute("ColorR",boxUnits[boxUnitIter].ColorRGB[0]);
+ BoxUnitNode->setAttribute("ColorG",boxUnits[boxUnitIter].ColorRGB[1]);
+ BoxUnitNode->setAttribute("ColorB",boxUnits[boxUnitIter].ColorRGB[2]);
+ BoxUnitNode->setAttribute("NumBoxes", (int)boxUnits[boxUnitIter].lstBoxes.size());
+ for (int boxIter=0;boxIter<boxUnits[boxUnitIter].lstBoxes.size();boxIter++)
+ {
+ XmlElement* BoxNode = BoxUnitNode->createNewChildElement("BOX");
+ BoxNode->setAttribute("ch", (int)boxUnits[boxUnitIter].lstBoxes[boxIter].channel);
+ BoxNode->setAttribute("x", (int)boxUnits[boxUnitIter].lstBoxes[boxIter].x);
+ BoxNode->setAttribute("y", (int)boxUnits[boxUnitIter].lstBoxes[boxIter].y);
+ BoxNode->setAttribute("w", (int)boxUnits[boxUnitIter].lstBoxes[boxIter].w);
+ BoxNode->setAttribute("h", (int)boxUnits[boxUnitIter].lstBoxes[boxIter].h);
+ }
+ }
+
+ for (int pcaUnitIter=0;pcaUnitIter<pcaUnits.size();pcaUnitIter++)
+ {
+ XmlElement* PcaUnitNode = spikesortNode->createNewChildElement("PCAUNIT");
+
+ PcaUnitNode->setAttribute("UnitID",pcaUnits[pcaUnitIter].UnitID);
+ PcaUnitNode->setAttribute("ColorR",pcaUnits[pcaUnitIter].ColorRGB[0]);
+ PcaUnitNode->setAttribute("ColorG",pcaUnits[pcaUnitIter].ColorRGB[1]);
+ PcaUnitNode->setAttribute("ColorB",pcaUnits[pcaUnitIter].ColorRGB[2]);
+ PcaUnitNode->setAttribute("PolygonNumPoints",(int)pcaUnits[pcaUnitIter].poly.pts.size());
+ PcaUnitNode->setAttribute("PolygonOffsetX",(int)pcaUnits[pcaUnitIter].poly.offset.X);
+ PcaUnitNode->setAttribute("PolygonOffsetY",(int)pcaUnits[pcaUnitIter].poly.offset.Y);
+
+ for (int p=0;p<pcaUnits[pcaUnitIter].poly.pts.size();p++)
+ {
+ XmlElement* PolygonNode = PcaUnitNode->createNewChildElement("POLYGON_POINT");
+ PolygonNode->setAttribute("pointX", pcaUnits[pcaUnitIter].poly.pts[p].X);
+ PolygonNode->setAttribute("pointY", pcaUnits[pcaUnitIter].poly.pts[p].Y);
+ }
+ }
+
+
+ //float *pc1, *pc2;
+
+
+ }
+
+SpikeSortBoxes::~SpikeSortBoxes()
+{
+ // wait until PCA job is done (if one was submitted).
+ delete pc1;
+ delete pc2;
+ pc1 = nullptr;
+ pc2 = nullptr;
+}
+
+void SpikeSortBoxes::setSelectedUnitAndBox(int unitID, int boxID)
+{
+ selectedUnit = unitID;
+ selectedBox = boxID;
+}
+
+void SpikeSortBoxes::getSelectedUnitAndBox(int &unitID, int &boxid)
+{
+ unitID = selectedUnit;
+ boxid = selectedBox;
+}
+
+void SpikeSortBoxes::projectOnPrincipalComponents(SpikeObject *so)
+{
+ SpikeObject copySpike = *so;
+ spikeBufferIndex++;
+ spikeBufferIndex %= bufferSize;
+ spikeBuffer.set(spikeBufferIndex, copySpike);
+ if (bPCAjobFinished)
+ {
+ bPCAcomputed = true;
+ }
+
+ if (bPCAcomputed)
+ {
+ so->pcProj[0] = so->pcProj[1] = 0;
+ for (int k=0;k<so->nChannels*so->nSamples;k++)
+ {
+ float v = spikeDataIndexToMicrovolts(so, k);
+ so->pcProj[0] += pc1[k]* v;
+ so->pcProj[1] += pc2[k]* v;
+ }
+ if (so->pcProj[0] > 1e5 || so->pcProj[0] < -1e5 || so->pcProj[1] > 1e5 || so->pcProj[1] < -1e5)
+ {
+ int dbg = 1;
+ }
+ } else
+ {
+ // add a spike object to the buffer.
+ // if we have enough spikes, start the PCA computation thread.
+ if ((spikeBufferIndex == bufferSize -1 && !bPCAcomputed && !bPCAJobSubmitted) || bRePCA)
+ {
+ bPCAJobSubmitted = true;
+ bRePCA = false;
+ // submit a new job to compute the spike buffer.
+ PCAjob job(spikeBuffer,pc1,pc2, &pc1min, &pc2min, &pc1max, &pc2max, &bPCAjobFinished);
+ computingThread->addPCAjob(job);
+ }
+ }
+}
+
+ void SpikeSortBoxes::getPCArange(float &p1min,float &p2min, float &p1max, float &p2max)
+ {
+ p1min = pc1min;
+ p2min = pc2min;
+ p1max = pc1max;
+ p2max = pc2max;
+ }
+
+ void SpikeSortBoxes::setPCArange(float p1min,float p2min, float p1max, float p2max)
+ {
+ pc1min=p1min;
+ pc2min=p2min;
+ pc1max=p1max;
+ pc2max=p2max;
+ }
+
+
+ void SpikeSortBoxes::resetJobStatus()
+ {
+ bPCAjobFinished = false;
+ }
+
+ bool SpikeSortBoxes::isPCAfinished()
+ {
+ return bPCAjobFinished;
+ }
+ void SpikeSortBoxes::RePCA()
+ {
+ bPCAcomputed = false;
+ bPCAJobSubmitted = false;
+ bRePCA = true;
+ }
+
+ void SpikeSortBoxes::addPCAunit(PCAUnit unit)
+ {
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ pcaUnits.push_back(unit);
+ //EndCriticalSection();
+ }
+
+ // Adds a new unit with a single box at some default location.
+ // returns the unit id
+ int SpikeSortBoxes::addBoxUnit(int channel)
+ {
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ int unusedID = uniqueIDgenerator->generateUniqueID(); //generateUnitID();
+ BoxUnit unit(unusedID, generateLocalID());
+ boxUnits.push_back(unit);
+ setSelectedUnitAndBox(unusedID, 0);
+ //EndCriticalSection();
+ return unusedID;
+ }
+/*
+void SpikeSortBoxes::StartCriticalSection()
+{
+ mut.enter();
+}
+
+void SpikeSortBoxes::EndCriticalSection()
+{
+ mut.exit();
+}
+*/
+ int SpikeSortBoxes::addBoxUnit(int channel, Box B)
+ {
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ int unusedID = uniqueIDgenerator->generateUniqueID(); //generateUnitID();
+ BoxUnit unit(B, unusedID,generateLocalID());
+ boxUnits.push_back(unit);
+ setSelectedUnitAndBox(unusedID, 0);
+ //EndCriticalSection();
+ return unusedID;
+ }
+
+ void SpikeSortBoxes::getUnitColor(int UnitID, uint8 &R, uint8 &G, uint8 &B)
+ {
+ for (int k = 0; k < boxUnits.size(); k++)
+ {
+ if (boxUnits[k].getUnitID() == UnitID)
+ {
+ R = boxUnits[k].ColorRGB[0];
+ G = boxUnits[k].ColorRGB[1];
+ B = boxUnits[k].ColorRGB[2];
+ break;
+ }
+ }
+ for (int k = 0; k < pcaUnits.size(); k++)
+ {
+ if (pcaUnits[k].getUnitID() == UnitID)
+ {
+ R = pcaUnits[k].ColorRGB[0];
+ G = pcaUnits[k].ColorRGB[1];
+ B = pcaUnits[k].ColorRGB[2];
+ break;
+ }
+ }
+ }
+
+ int SpikeSortBoxes::generateLocalID()
+ {
+ // finds the first unused ID and return it
+
+ int ID = 1;
+
+ while (true)
+ {
+ bool used=false;
+ for (int k = 0; k < boxUnits.size(); k++)
+ {
+ if (boxUnits[k].getLocalID() == ID)
+ {
+ used = true;
+ break;
+ }
+ }
+ for (int k = 0; k < pcaUnits.size(); k++)
+ {
+ if (pcaUnits[k].getLocalID() == ID)
+ {
+ used = true;
+ break;
+ }
+ }
+
+ if (used)
+ ID++;
+ else
+ break;
+ }
+ return ID;
+ }
+
+ int SpikeSortBoxes::generateUnitID()
+ {
+
+ int ID = uniqueIDgenerator->generateUniqueID();
+ return ID;
+}
+
+
+ void SpikeSortBoxes::generateNewIDs()
+ {
+ const ScopedLock myScopedLock (mut);
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ boxUnits[k].UnitID = generateUnitID();
+ }
+ for (int k=0;k<pcaUnits.size();k++)
+ {
+ pcaUnits[k].UnitID = generateUnitID();
+ }
+ }
+
+void SpikeSortBoxes::removeAllUnits()
+{
+ const ScopedLock myScopedLock (mut);
+ boxUnits.clear();
+ pcaUnits.clear();
+}
+
+bool SpikeSortBoxes::removeUnit(int unitID)
+{
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ if ( boxUnits[k].getUnitID() == unitID)
+ {
+ boxUnits.erase(boxUnits.begin()+k);
+ //EndCriticalSection();
+ return true;
+ }
+ }
+
+ for (int k=0;k<pcaUnits.size();k++)
+ {
+ if ( pcaUnits[k].getUnitID() == unitID)
+ {
+ pcaUnits.erase(pcaUnits.begin()+k);
+ //EndCriticalSection();
+ return true;
+ }
+ }
+
+ // EndCriticalSection();
+ return false;
+
+}
+
+bool SpikeSortBoxes::addBoxToUnit(int channel, int unitID)
+{
+ const ScopedLock myScopedLock (mut);
+
+ //StartCriticalSection();
+
+ for (int k = 0; k < boxUnits.size(); k++)
+ {
+ if (boxUnits[k].getUnitID() == unitID)
+ {
+ Box B = boxUnits[k].lstBoxes[boxUnits[k].lstBoxes.size() - 1];
+ B.x += 100;
+ B.y -= 30;
+ B.channel = channel;
+ boxUnits[k].addBox(B);
+ setSelectedUnitAndBox(unitID, boxUnits[k].lstBoxes.size() - 1);
+ // EndCriticalSection();
+ return true;
+ }
+ }
+// EndCriticalSection();
+ return false;
+}
+
+
+bool SpikeSortBoxes::addBoxToUnit(int channel, int unitID, Box B)
+{
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ if ( boxUnits[k].getUnitID() == unitID)
+ {
+ boxUnits[k].addBox(B);
+ // EndCriticalSection();
+ return true;
+ }
+ }
+ //EndCriticalSection();
+ return false;
+}
+
+std::vector<BoxUnit> SpikeSortBoxes::getBoxUnits()
+{
+ //StartCriticalSection();
+ const ScopedLock myScopedLock (mut);
+ std::vector<BoxUnit> unitsCopy = boxUnits;
+ //EndCriticalSection();
+ return unitsCopy;
+}
+
+
+std::vector<PCAUnit> SpikeSortBoxes::getPCAUnits()
+{
+ //StartCriticalSection();
+ const ScopedLock myScopedLock (mut);
+ std::vector<PCAUnit> unitsCopy = pcaUnits;
+ //EndCriticalSection();
+ return unitsCopy;
+}
+
+void SpikeSortBoxes::updatePCAUnits(std::vector<PCAUnit> _units)
+{
+ //StartCriticalSection();
+ const ScopedLock myScopedLock (mut);
+ pcaUnits = _units;
+ //EndCriticalSection();
+}
+
+void SpikeSortBoxes::updateBoxUnits(std::vector<BoxUnit> _units)
+{
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ boxUnits = _units;
+ //EndCriticalSection();
+}
+
+
+
+
+// tests whether a candidate spike belongs to one of the defined units
+bool SpikeSortBoxes::sortSpike(SpikeObject *so, bool PCAfirst)
+{
+ const ScopedLock myScopedLock (mut);
+ if (PCAfirst) {
+
+ for (int k=0;k<pcaUnits.size();k++)
+ {
+ if (pcaUnits[k].isWaveFormInsidePolygon(so))
+ {
+ so->sortedId = pcaUnits[k].getUnitID();
+ so->color[0] = pcaUnits[k].ColorRGB[0];
+ so->color[1] = pcaUnits[k].ColorRGB[1];
+ so->color[2] = pcaUnits[k].ColorRGB[2];
+ return true;
+ }
+ }
+
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ if ( boxUnits[k].isWaveFormInsideAllBoxes(so)) {
+ so->sortedId = boxUnits[k].getUnitID();
+ so->color[0] = boxUnits[k].ColorRGB[0];
+ so->color[1] = boxUnits[k].ColorRGB[1];
+ so->color[2] = boxUnits[k].ColorRGB[2];
+ boxUnits[k].updateWaveform(so);
+ return true;
+ }
+ }
+ } else
+ {
+
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ if ( boxUnits[k].isWaveFormInsideAllBoxes(so)) {
+ so->sortedId = boxUnits[k].getUnitID();
+ so->color[0] = boxUnits[k].ColorRGB[0];
+ so->color[1] = boxUnits[k].ColorRGB[1];
+ so->color[2] = boxUnits[k].ColorRGB[2];
+ boxUnits[k].updateWaveform(so);
+ return true;
+ }
+ }
+ for (int k=0;k<pcaUnits.size();k++)
+ {
+ if (pcaUnits[k].isWaveFormInsidePolygon(so))
+ {
+ so->sortedId = pcaUnits[k].getUnitID();
+ so->color[0] = pcaUnits[k].ColorRGB[0];
+ so->color[1] = pcaUnits[k].ColorRGB[1];
+ so->color[2] = pcaUnits[k].ColorRGB[2];
+ pcaUnits[k].updateWaveform(so);
+ return true;
+ }
+ }
+
+ }
+
+ return false;
+}
+
+
+bool SpikeSortBoxes::removeBoxFromUnit(int unitID, int boxIndex)
+{
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ for (int k=0;k<boxUnits.size();k++)
+ {
+ if ( boxUnits[k].getUnitID() == unitID)
+ {
+ bool s= boxUnits[k].deleteBox(boxIndex);
+ setSelectedUnitAndBox(-1,-1);
+ //EndCriticalSection();
+ return s;
+ }
+
+ }
+
+ //EndCriticalSection();
+ return false;
+}
+
+std::vector<Box> SpikeSortBoxes::getUnitBoxes(int unitID)
+{
+ std::vector<Box> boxes;
+ const ScopedLock myScopedLock (mut);
+ //StartCriticalSection();
+ for (int k=0;k< boxUnits.size();k++)
+ {
+ if ( boxUnits[k].getUnitID() == unitID)
+ {
+
+ boxes = boxUnits[k].getBoxes();
+ // EndCriticalSection();
+ return boxes;
+ }
+ }
+ //EndCriticalSection();
+ return boxes;
+}
+
+
+int SpikeSortBoxes::getNumBoxes(int unitID)
+{
+ const ScopedLock myScopedLock (mut);
+ // StartCriticalSection();
+ for (int k=0;k< boxUnits.size();k++)
+ {
+ if ( boxUnits[k].getUnitID() == unitID)
+ {
+
+ int n =boxUnits[k].getNumBoxes();
+ // EndCriticalSection();
+ return n;
+ }
+ }
+ //EndCriticalSection();
+ return -1;
+}
+
+/*
+ public void DrawBoxes(BufferedGraphics buf, int channel, int SelectedUnit, int SelectedBox,
+ double XScale, double XOffset, double YScale, double YOffset)
+ {
+ mut.WaitOne();
+ int unitcounter=0;
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ {
+ Pen myPen = new Pen(unit.ColorRGB);
+ int boxcounter =0;
+ foreach (Box b in unit.getBoxes())
+ {
+ if (unit.GetUnitID() == SelectedUnit && SelectedBox == boxcounter)
+ {
+ myPen.Width = 3;
+
+ }
+ else
+ {
+ myPen.Width = 1;
+ }
+
+ buf.Graphics.DrawRectangle(myPen, (float)(b.x * XScale + XOffset),
+ (float)(YOffset-YScale*b.y),
+ (float)((b.w) * XScale),
+ (float)(YScale*b.h));
+ boxcounter++;
+ }
+ unitcounter++;
+ }
+ mut.ReleaseMutex();
+ }
+
+ public bool IsUnitActivated(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ return unit.IsActivated();
+ return false;
+ }
+
+ public void ActivateUnit(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ unit.ActivateUnit();
+ }
+ public void DectivateUnit(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ unit.DeactivateUnit();
+ }
+ public double GetNumSecUnitActive(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ return unit.GetNumSecondsActive();
+
+ return 0;
+ }
+ public void ToggleActivate(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ unit.ToggleActive();
+ }
+
+
+ public void UpdateUnitBoxPos(int channel, int unitID, int boxID, PointD P)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ unit.SetBoxPos(boxID,P);
+ }
+
+ public void UpdateUnitBoxPosAndSize(int channel, int unitID, int boxID, Box B)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ if (unit.GetUnitID() == unitID)
+ unit.SetBox(boxID, B);
+ }
+
+
+ //YScaleFactors[yScaleIndex]
+ public void DrawWavesInBuffer(BufferedGraphics buf, int channel, double XScale, double YScale, double YOffset)
+ {
+ mut.WaitOne();
+ foreach (WaveForm wf in WaveFormBuffer[channel])
+ {
+ Pen myPen = new Pen(wf.colorRGB);
+ for (int j = 0; j < wf.numpts - 1; j++)
+ {
+ buf.Graphics.DrawLine(myPen,
+ (float)(XScale * j),
+ (float)(YOffset - YScale * wf.Wave[wf.detected_on_channel_index, j]),
+ (float)(XScale * (j + 1)), (float)(YOffset - YScale * wf.Wave[wf.detected_on_channel_index, j + 1]));
+ }
+ }
+ mut.ReleaseMutex();
+ }
+
+ public void ClearAvgWaveForm(int channel, int UnitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ {
+ if (unit.GetUnitID() == UnitID)
+ {
+ unit.ResetWaveForm();
+ return;
+ }
+ }
+ }
+
+ public void GetWaveFormsMeanVar(int Channel, out double[,] Mean, out double[,] Std, out int[] UnitIDs, out Boolean[] HasData)
+ {
+ mut.WaitOne();
+ int Counter=0,dim1;
+ if (WaveFormBuffer[0].Count == 0)
+ dim1 = 62;
+ else
+ dim1 = WaveFormBuffer[0][0].Wave.GetLength(1);
+
+ HasData = new Boolean[lstChannelUnits[Channel].Count];
+ Mean = new double[lstChannelUnits[Channel].Count,dim1];
+ Std = new double[lstChannelUnits[Channel].Count,dim1];
+ UnitIDs = new int[lstChannelUnits[Channel].Count];
+ foreach (BoxUnit unit in lstChannelUnits[Channel])
+ {
+ double[] MeanUnit, StdUnit;
+ HasData[Counter] = false;
+ UnitIDs[Counter] = unit.GetUnitID();
+ unit.GetWaveFormMeanStd(out MeanUnit, out StdUnit, 0);
+ if (MeanUnit == null)
+ {
+ Counter++;
+ continue;
+ }
+ HasData[Counter] = true;
+ for (int j = 0; j < dim1; j++)
+ {
+ Mean[Counter,j] = MeanUnit[j];
+ Std[Counter, j] = StdUnit[j];
+ }
+
+ Counter++;
+ }
+ mut.ReleaseMutex();
+ }
+
+
+ private bool GetUnit(int Channel, int UnitID, out BoxUnit box)
+ {
+ box = new BoxUnit(0);
+ foreach (BoxUnit unit in lstChannelUnits[Channel])
+ {
+ if (unit.GetUnitID() == UnitID)
+ {
+ box = unit;
+ return true;
+ }
+ }
+ return false;
+ }
+
+ public void DrawInterSpikeHistogram(int channel, int UnitID, BufferedGraphics buf, int Width, int Height)
+ {
+ mut.WaitOne();
+ BoxUnit unit;
+ if (!GetUnit(channel, UnitID, out unit))
+ {
+ mut.ReleaseMutex();
+ return;
+ }
+
+ Color FadedColor = Color.FromArgb(unit.ColorRGB.A, unit.ColorRGB.R / 2, unit.ColorRGB.G / 2, unit.ColorRGB.B / 2);
+ Pen myPen = new Pen(FadedColor);
+
+ int NumPointsToDraw = 30;
+ float XScale = (float)Width / NumPointsToDraw;
+ Histogram hist = unit.GetInterSpikeHistogram();
+ SolidBrush myBrush = new SolidBrush(FadedColor);
+ SolidBrush myRedBrush = new SolidBrush(Color.Red);
+ if (hist.Max > 0)
+ {
+ float YScale = (float)Height / hist.Max;
+
+ for (int j = 0; j < NumPointsToDraw - 1; j++)
+ {
+ if (j > 2)
+ buf.Graphics.FillRectangle(myBrush, new Rectangle((int)(XScale * (j + 0.5)), (int)(Height - YScale * hist.Counter[j]), (int)(Width / NumPointsToDraw), (int)(YScale * hist.Counter[j])));
+ else
+ buf.Graphics.FillRectangle(myRedBrush, new Rectangle((int)(XScale * (j + 0.5)), (int)(Height - YScale * hist.Counter[j]), (int)(Width / NumPointsToDraw), (int)(YScale * hist.Counter[j])));
+
+ }
+ }
+ mut.ReleaseMutex();
+ }
+
+
+ public void DrawAvgWaveForm(int channel, int UnitID, BufferedGraphics buf, int Width, int Height, double YScale )
+ {
+ BoxUnit unit;
+ mut.WaitOne();
+ if (!GetUnit(channel, UnitID, out unit))
+ {
+ mut.ReleaseMutex();
+ return;
+ }
+
+ double [] Mean;
+ double [] Std;
+ unit.GetWaveFormMeanStd(out Mean, out Std, 0);
+ if (Mean == null)
+ {
+ mut.ReleaseMutex();
+ return;
+ }
+
+
+ Pen myPen = new Pen(unit.ColorRGB);
+ Pen myDashPen = new Pen(unit.ColorRGB);
+ myDashPen.DashStyle = System.Drawing.Drawing2D.DashStyle.DashDot;
+
+ int WaveFormLength = Mean.Length;
+ float XScale = (float)Width / 62.0F;
+ float YOffset = (float)Height / 2.0F;
+
+ for (int j = 0; j < WaveFormLength - 1; j++)
+ {
+ buf.Graphics.DrawLine(myPen,
+ (float)(XScale * j),
+ (float)(YOffset - YScale * Mean[j]),
+ (float)(XScale * (j + 1)), (float)(YOffset - YScale * Mean[j + 1]));
+
+ buf.Graphics.DrawLine(myDashPen,
+ (float)(XScale * j),
+ (float)(YOffset - YScale * (Std[ j] + Mean[ j])),
+ (float)(XScale * (j + 1)), (float)(YOffset - YScale * (Std[ j + 1] +Mean[ j + 1])));
+
+ buf.Graphics.DrawLine(myDashPen,
+ (float)(XScale * j),
+ (float)(YOffset - YScale * (-Std[ j] + Mean[ j])),
+ (float)(XScale * (j + 1)), (float)(YOffset - YScale * (-Std[j + 1] + Mean[ j + 1])));
+
+ }
+ mut.ReleaseMutex();
+ }
+
+
+ public Histogram GetInterSpikeHistogram(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ {
+ if (unit.GetUnitID() == unitID)
+ {
+ return unit.GetInterSpikeHistogram();
+ }
+ }
+ return new Histogram(0,0,0);
+ }
+
+ public bool QueryNewData(int channel, int unitID)
+ {
+ foreach (BoxUnit unit in lstChannelUnits[channel])
+ {
+ if (unit.GetUnitID() == unitID)
+ {
+ return unit.QueryNewData();
+ }
+ }
+ return false;
+ }
+
+ public void ClearBuffer(int ch)
+ {
+ WaveFormBuffer[ch].Clear();
+ }
+
+ public WaveForm GetLastWaveForm(int channel)
+ {
+ mut.WaitOne();
+ WaveForm wf ;
+ if (WaveFormBuffer[channel].Count > 0)
+ wf = WaveFormBuffer[channel][WaveFormBuffer[channel].Count - 1];
+ else
+ wf = new WaveForm();
+
+ mut.ReleaseMutex();
+ return wf;
+ }
+
+ */
+
+/**************************/
+
+cPolygon::cPolygon()
+{
+};
+
+bool cPolygon::isPointInside(PointD p)
+{
+ PointD p1, p2;
+
+ bool inside = false;
+
+ if (pts.size() < 3)
+ {
+ return inside;
+ }
+
+ PointD oldPoint(pts[pts.size()- 1].X + offset.X, pts[pts.size()- 1].Y + offset.Y);
+
+ for (int i = 0; i < pts.size(); i++)
+ {
+ PointD newPoint(pts[i].X + offset.X, pts[i].Y + offset.Y);
+
+ if (newPoint.X > oldPoint.X)
+ {
+ p1 = oldPoint;
+ p2 = newPoint;
+ }
+ else
+ {
+ p1 = newPoint;
+ p2 = oldPoint;
+ }
+
+ if ((newPoint.X < p.X) == (p.X <= oldPoint.X)
+ && ((p.Y - p1.Y) * (p2.X - p1.X) < (p2.Y - p1.Y) * (p.X - p1.X)))
+ {
+ inside = !inside;
+ }
+
+ oldPoint = newPoint;
+ }
+
+ return inside;
+}
+
+
+
+
+
+
+
+
+
+/*****************/
+
+
+/*************************/
+PCAUnit::PCAUnit()
+{
+
+}
+
+PCAUnit::PCAUnit(int ID, int localID_): UnitID(ID),localID(localID_)
+{
+ BoxUnit::setDefaultColors(ColorRGB, localID);
+};
+
+PCAUnit::~PCAUnit()
+{
+}
+
+PCAUnit::PCAUnit(cPolygon B, int ID, int localID_) : UnitID(ID), localID(localID_)
+{
+ poly = B;
+}
+
+int PCAUnit::getUnitID()
+{
+ return UnitID;
+}
+int PCAUnit::getLocalID()
+{
+ return localID;
+}
+
+bool PCAUnit::isPointInsidePolygon(PointD p)
+{
+ return poly.isPointInside(p);
+}
+
+bool PCAUnit::isWaveFormInsidePolygon(SpikeObject *so)
+{
+ return poly.isPointInside(PointD(so->pcProj[0],so->pcProj[1]));
+}
+
+void PCAUnit::resizeWaveform(int newlength)
+{
+}
+
+
+void PCAUnit::updateWaveform(SpikeObject *so)
+{
+ WaveformStat.update(so);
+}
+
+/***************************/
+
+
+/*
+ An implementation of SVD from Numerical Recipes in C and Mike Erhdmann's lectures
+*/
+
+
+#define SIGN(a,b) ((b) > 0.0 ? fabs(a) : - fabs(a))
+
+static double maxarg1,maxarg2;
+#define FMAX(a,b) (maxarg1 = (a),maxarg2 = (b),(maxarg1) > (maxarg2) ? (maxarg1) : (maxarg2))
+
+static int iminarg1,iminarg2;
+#define IMIN(a,b) (iminarg1 = (a),iminarg2 = (b),(iminarg1 < (iminarg2) ? (iminarg1) : iminarg2))
+
+static double sqrarg;
+#define SQR(a) ((sqrarg = (a)) == 0.0 ? 0.0 : sqrarg * sqrarg)
+
+PCAjob::PCAjob(Array<SpikeObject> _spikes, float *_pc1, float *_pc2,
+ float *pc1Min, float *pc2Min, float *pc1Max, float *pc2Max, bool *_reportDone) : spikes(_spikes), reportDone(_reportDone)
+{
+ cov = nullptr;
+ pc1 = _pc1;
+ pc2 = _pc2;
+ pc1min = pc1Min;
+ pc2min = pc2Min;
+ pc1max = pc1Max;
+ pc2max = pc2Max;
+ dim = spikes[0].nChannels*spikes[0].nSamples;
+
+};
+
+ PCAjob::~PCAjob()
+{
+
+}
+
+
+
+// calculates sqrt( a^2 + b^2 ) with decent precision
+float PCAjob::pythag(float a, float b) {
+ float absa,absb;
+
+ absa = fabs(a);
+ absb = fabs(b);
+
+ if(absa > absb)
+ return(absa * sqrt(1.0 + SQR(absb/absa)));
+ else
+ return(absb == 0.0 ? 0.0 : absb * sqrt(1.0 + SQR(absa / absb)));
+}
+
+/*
+ Modified from Numerical Recipes in C
+ Given a matrix a[nRows][nCols], svdcmp() computes its singular value
+ decomposition, A = U * W * Vt. A is replaced by U when svdcmp
+ returns. The diagonal matrix W is output as a vector w[nCols].
+ V (not V transpose) is output as the matrix V[nCols][nCols].
+*/
+int PCAjob::svdcmp(float **a, int nRows, int nCols, float *w, float **v) {
+
+ int flag, i, its, j, jj, k, l, nm;
+ float anorm, c, f, g, h, s, scale, x, y, z, *rv1;
+
+ rv1 = new float[nCols];
+ if(rv1 == NULL) {
+ printf("svdcmp(): Unable to allocate vector\n");
+ return(-1);
+ }
+
+ g = scale = anorm = 0.0;
+ for(i = 0; i < nCols; i++) {
+ l = i+1;
+ rv1[i] = scale*g;
+ g = s = scale = 0.0;
+ if (i < nRows)
+ {
+ for(k = i; k < nRows; k++)
+ {
+ //std::cout << k << " " << i << std::endl;
+ scale += fabs(a[k][i]);
+ }
+
+ if(scale)
+ {
+ for(k = i; k < nRows; k++)
+ {
+ a[k][i] /= scale;
+ s += a[k][i] * a[k][i];
+ }
+ f = a[i][i];
+ g = -SIGN(sqrt(s),f);
+ h = f * g - s;
+ a[i][i] = f - g;
+
+ for(j = l; j < nCols; j++)
+ {
+ for(s = 0.0, k = i; k < nRows; k++) s += a[k][i] * a[k][j];
+ f = s / h;
+ for(k = i; k < nRows; k++) a[k][j] += f * a[k][i];
+ }
+
+ for(k = i; k < nRows; k++)
+ a[k][i] *= scale;
+ } // end if (scale)
+ } // end if (i < nRows)
+ w[i] = scale * g;
+ g = s = scale = 0.0;
+ if(i < nRows && i != nCols-1) {
+ for(k = l; k < nCols; k++) scale += fabs(a[i][k]);
+ if(scale) {
+ for(k = l; k < nCols; k++)
+ {
+ a[i][k] /= scale;
+ s += a[i][k] * a[i][k];
+ }
+ f = a[i][l];
+ g = - SIGN(sqrt(s),f);
+ h = f * g - s;
+ a[i][l] = f - g;
+ for(k=l;k<nCols;k++) rv1[k] = a[i][k] / h;
+ for(j=l;j<nRows;j++) {
+ for(s=0.0,k=l;k<nCols;k++) s += a[j][k] * a[i][k];
+ for(k=l;k<nCols;k++) a[j][k] += s * rv1[k];
+ }
+ for(k=l;k<nCols;k++) a[i][k] *= scale;
+ }
+ }
+ anorm = FMAX(anorm, (fabs(w[i]) + fabs(rv1[i])));
+
+
+ }
+
+ for(i=nCols-1;i>=0;i--) {
+ if(i < nCols-1) {
+ if(g) {
+ for(j=l;j<nCols;j++)
+ v[j][i] = (a[i][j] / a[i][l]) / g;
+ for(j=l;j<nCols;j++) {
+ for(s=0.0,k=l;k<nCols;k++) s += a[i][k] * v[k][j];
+ for(k=l;k<nCols;k++) v[k][j] += s * v[k][i];
+ }
+ }
+ for(j=l;j<nCols;j++) v[i][j] = v[j][i] = 0.0;
+ }
+ v[i][i] = 1.0;
+ g = rv1[i];
+ l = i;
+ }
+
+ for(i=IMIN(nRows,nCols) - 1;i >= 0;i--) {
+ l = i + 1;
+ g = w[i];
+ for(j=l;j<nCols;j++) a[i][j] = 0.0;
+ if(g) {
+ g = 1.0 / g;
+ for(j=l;j<nCols;j++) {
+ for(s=0.0,k=l;k<nRows;k++) s += a[k][i] * a[k][j];
+ f = (s / a[i][i]) * g;
+ for(k=i;k<nRows;k++) a[k][j] += f * a[k][i];
+ }
+ for(j=i;j<nRows;j++) a[j][i] *= g;
+ }
+ else
+ for(j=i;j<nRows;j++) a[j][i] = 0.0;
+ ++a[i][i];
+ }
+
+ for(k=nCols-1;k>=0;k--) {
+ for(its=0;its<30;its++) {
+ flag = 1;
+ for(l=k;l>=0;l--) {
+ nm = l-1;
+ if((fabs(rv1[l]) + anorm) == anorm) {
+ flag = 0;
+ break;
+ }
+ if((fabs(w[nm]) + anorm) == anorm) break;
+ }
+ if(flag) {
+ c = 0.0;
+ s = 1.0;
+ for(i=l;i<=k;i++) {
+ f = s * rv1[i];
+ rv1[i] = c * rv1[i];
+ if((fabs(f) + anorm) == anorm) break;
+ g = w[i];
+ h = pythag(f,g);
+ w[i] = h;
+ h = 1.0 / h;
+ c = g * h;
+ s = -f * h;
+ for(j=0;j<nRows;j++) {
+ y = a[j][nm];
+ z = a[j][i];
+ a[j][nm] = y * c + z * s;
+ a[j][i] = z * c - y * s;
+ }
+ }
+ }
+ z = w[k];
+ if(l == k) {
+ if(z < 0.0) {
+ w[k] = -z;
+ for(j=0;j<nCols;j++) v[j][k] = -v[j][k];
+ }
+ break;
+ }
+ //if(its == 29) printf("no convergence in 30 svdcmp iterations\n");
+ x = w[l];
+ nm = k-1;
+ y = w[nm];
+ g = rv1[nm];
+ h = rv1[k];
+ f = ((y - z) * (y + z) + (g - h) * (g + h)) / (2.0 * h * y);
+ g = pythag(f,1.0);
+ f = ((x - z) * (x + z) + h * ((y / (f + SIGN(g,f))) - h)) / x;
+ c = s = 1.0;
+ for(j=l;j<=nm;j++) {
+ i = j+1;
+ g = rv1[i];
+ y = w[i];
+ h = s * g;
+ g = c * g;
+ z = pythag(f,h);
+ rv1[j] = z;
+ c = f/z;
+ s = h/z;
+ f = x * c + g * s;
+ g = g * c - x * s;
+ h = y * s;
+ y *= c;
+ for(jj=0;jj<nCols;jj++) {
+ x = v[jj][j];
+ z = v[jj][i];
+ v[jj][j] = x * c + z * s;
+ v[jj][i] = z * c - x * s;
+ }
+ z = pythag(f,h);
+ w[j] = z;
+ if(z) {
+ z = 1.0 / z;
+ c = f * z;
+ s = h * z;
+ }
+ f = c * g + s * y;
+ x = c * y - s * g;
+ for(jj=0;jj < nRows;jj++) {
+ y = a[jj][j];
+ z = a[jj][i];
+ a[jj][j] = y * c + z * s;
+ a[jj][i] = z * c - y * s;
+ }
+ }
+ rv1[l] = 0.0;
+ rv1[k] = f;
+ w[k] = x;
+ }
+ }
+
+ delete rv1;
+
+ return(0);
+}
+
+
+void PCAjob::computeCov()
+{
+ // allocate and zero
+ cov = new float*[dim];
+ float* mean = new float[dim];
+ for (int k = 0;k < dim; k++) {
+ cov[k] = new float[dim];
+ for (int j=0;j<dim;j++)
+ {
+ cov[k][j] = 0;
+ }
+ }
+ // compute mean
+
+ for (int j=0;j<dim;j++)
+ {
+ mean[j] = 0;
+ for (int i=0;i<spikes.size();i++)
+ {
+ SpikeObject spike = spikes[i];
+ float v = spikeDataIndexToMicrovolts(&spike, j) ;
+ mean[j] += v / dim;
+ }
+ }
+ // aggregate
+
+
+ for (int i=0;i<dim;i++) {
+ for (int j=i;j<dim;j++)
+ {
+ // cov[i][j] = sum_k[ (X(i,:)) * (Xj-mue(j) ]
+ float sum = 0 ;
+ for (int k=0;k<spikes.size();k++)
+ {
+
+ SpikeObject spike = spikes[k];
+ float vi = spikeDataIndexToMicrovolts(&spike, i);
+ float vj = spikeDataIndexToMicrovolts(&spike, j);
+ sum += (vi-mean[i]) * (vj-mean[j]);
+ }
+ cov[i][j] = sum / (dim-1);
+ cov[j][i] = sum / (dim-1);
+ }
+ }
+ delete mean;
+
+ // delete covariances
+ //for (int k = 0; k < dim; k++)
+ //delete cov[k];
+
+ //delete(cov);
+ //cov = nullptr;
+
+}
+
+std::vector<int> sort_indexes( std::vector<float> v)
+{
+ // initialize original index locations
+ std::vector<int> idx(v.size());
+
+ for (int i = 0; i != idx.size(); ++i)
+ {
+ idx[i] = i;
+ }
+
+ //sort indexes based on comparing values in v
+ sort(
+ idx.begin(),
+ idx.end()//,
+ //[&v](size_t i1, size_t i2)
+ //{
+ // return v[i1] > v[i2];
+ //}
+ );
+
+ return idx;
+}
+
+void PCAjob::computeSVD()
+{
+
+
+ float **eigvec, *sigvalues;
+ sigvalues = new float[dim];
+
+ eigvec = new float*[dim];
+ for (int k = 0; k < dim; k++) {
+ eigvec[k] = new float[dim];
+ for (int j=0;j<dim;j++)
+ {
+ eigvec[k][j] = 0;
+ }
+ }
+
+ svdcmp(cov, dim, dim, sigvalues, eigvec);
+
+ std::vector<float> sig;
+ sig.resize(dim);
+ for (int k = 0; k < dim; k++)
+ sig[k] = sigvalues[k];
+
+ std::vector<int> sortind = sort_indexes(sig);
+
+ for (int k = 0; k < dim; k++)
+ {
+ pc1[k] = eigvec[k][sortind[0]];
+ pc2[k] = eigvec[k][sortind[1]];
+ }
+ // project samples to find the display range
+ float min1 = 1e10, min2 = 1e10, max1 = -1e10, max2 = -1e10;
+
+ for (int j = 0; j < spikes.size(); j++)
+ {
+ float sum1 = 0, sum2=0;
+ for (int k = 0; k < dim; k++)
+ {
+ SpikeObject spike = spikes[j];
+ sum1 += spikeDataIndexToMicrovolts(&spike,k) * pc1[k];
+ sum2 += spikeDataIndexToMicrovolts(&spike,k) * pc2[k];
+ }
+ if (sum1 < min1)
+ min1 = sum1;
+ if (sum2 < min2)
+ min2 = sum2;
+ if (sum1 > max1)
+ max1 = sum1;
+ if (sum2 > max2)
+ max2 = sum2;
+ }
+
+
+ *pc1min = min1 - 1.5 * (max1-min1);
+ *pc2min = min2 - 1.5 * (max2-min2);
+ *pc1max = max1 + 1.5 * (max1-min1);
+ *pc2max = max2 + 1.5 * (max2-min2);
+
+ // clear memory
+ for (int k = 0; k < dim; k++)
+ {
+ delete eigvec[k];
+ }
+ delete eigvec;
+ delete sigvalues;
+
+ // delete covariances
+ for (int k = 0; k < dim; k++)
+ delete cov[k];
+
+ delete(cov);
+ cov = nullptr;
+
+}
+
+
+/**********************/
+
+
+void PCAcomputingThread::addPCAjob(PCAjob job)
+{
+ jobs.push(job);
+ if (!isThreadRunning())
+ {
+ startThread();
+ }
+}
+
+void PCAcomputingThread::run()
+{
+ while (jobs.size() > 0)
+ {
+ PCAjob J = jobs.front();
+ jobs.pop();
+ // compute PCA
+ // 1. Compute Covariance matrix
+ // 2. Apply SVD on covariance matrix
+ // 3. Extract the two principal components corresponding to the largest singular values
+
+ J.computeCov();
+ J.computeSVD();
+
+ // 4. Report to the spike sorting electrode that PCA is finished
+ *(J.reportDone) = true;
+ }
+}
+
+
+PCAcomputingThread::PCAcomputingThread() : Thread("PCA")
+{
+
+}
diff --git a/Source/Processors/SpikeSorter/SpikeSortBoxes.h b/Source/Processors/SpikeSorter/SpikeSortBoxes.h
new file mode 100644
index 0000000000000000000000000000000000000000..1af4e2352668a1d6016b02ec284abbcd2150dcc0
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSortBoxes.h
@@ -0,0 +1,292 @@
+/*
+------------------------------------------------------------------
+
+This file is part of the Open Ephys GUI
+Copyright (C) 2013 Open Ephys
+
+------------------------------------------------------------------
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#ifndef __SPIKESORTBOXES_H
+#define __SPIKESORTBOXES_H
+
+#include "../../JuceLibraryCode/JuceHeader.h"
+
+#include "../GenericProcessor/GenericProcessor.h"
+#include "SpikeSorterEditor.h"
+#include "../Visualization/SpikeObject.h"
+#include <algorithm> // std::sort
+#include <list>
+#include <queue>
+
+class PCAcomputingThread;
+class UniqueIDgenerator;
+class PointD
+{
+public:
+
+ PointD();
+ PointD(float x, float y);
+ PointD(const PointD &P);
+ const PointD operator+(const PointD &c1) const;
+ PointD& operator+=(const PointD &rhs);
+ PointD& operator-=(const PointD &rhs);
+
+
+ const PointD operator-(const PointD &c1) const;
+ const PointD operator*(const PointD &c1) const;
+
+ float cross(PointD c) const;
+ float X,Y;
+};
+
+
+class Box
+{
+public:
+ Box();
+ Box(int channel);
+ Box(float X, float Y, float W, float H, int ch=0);
+ bool LineSegmentIntersection(PointD p11, PointD p12, PointD p21, PointD p22);
+ bool isWaveFormInside(SpikeObject *so);
+ double x,y,w,h; // x&w and specified in microseconds. y&h in microvolts
+ int channel;
+};
+
+
+/************************/
+class Histogram
+{
+public:
+ Histogram();
+ Histogram(int N, double T0, double T1);
+ ~Histogram();
+
+ void setParameters(int N, double T0, double T1);
+ std::vector<int> getCounter();
+ void reset();
+ void update(double x);
+
+ int Max;
+ double t0, t1;
+ std::vector<double> Time;
+ int numBins;
+ std::vector<int> Counter;
+
+};
+
+class RunningStats
+{
+public:
+ RunningStats();
+ ~RunningStats();
+ void resizeWaveform(int newlength);
+ void reset();
+ Histogram getHistogram();
+ std::vector<double> getMean(int index);
+ std::vector<double> getStandardDeviation(int index);
+ void update(SpikeObject *so);
+ bool queryNewData();
+
+ double LastSpikeTime;
+ bool newData;
+ Histogram hist;
+ std::vector<std::vector<double> > WaveFormMean,WaveFormSk,WaveFormMk;
+ double numSamples;
+
+
+};
+
+// Box unit defines a single unit (with multiple boxes)
+// Each box can be on a different channel
+class BoxUnit
+{
+public:
+ BoxUnit();
+ BoxUnit(int ID, int localID);
+ BoxUnit(Box B, int ID, int localID);
+ bool isWaveFormInsideAllBoxes(SpikeObject *so);
+ bool isActivated();
+ void activateUnit();
+ void deactivateUnit();
+ double getNumSecondsActive();
+ void toggleActive();
+ void addBox(Box b);
+ void addBox();
+ int getNumBoxes();
+ void modifyBox(int boxindex, Box b);
+ bool deleteBox(int boxindex);
+ Box getBox(int box);
+ void setBox(int boxid, Box B);
+ void setBoxPos(int boxid, PointD P);
+ void setBoxSize(int boxid, double W, double H);
+ void MoveBox(int boxid, int dx, int dy);
+ std::vector<Box> getBoxes();
+ int getUnitID();
+ int getLocalID();
+ void updateWaveform(SpikeObject *so);
+ static void setDefaultColors(uint8_t col[3], int ID);
+ void resizeWaveform(int newlength);
+public:
+ int UnitID;
+ int localID; // used internally, for colors and position.
+ std::vector<Box> lstBoxes;
+ uint8_t ColorRGB[3];
+ RunningStats WaveformStat;
+ bool Active;
+ juce::int64 Activated_TS_S;
+ Time timer;
+
+};
+
+/*
+class PCAjob
+{
+public:
+PCAjob();
+};*/
+class PCAjob
+{
+public:
+ PCAjob(Array<SpikeObject> _spikes, float *_pc1, float *_pc2,
+ float *, float *, float *, float *, bool *_reportDone);
+ ~PCAjob();
+ void computeCov();
+ void computeSVD();
+
+ float **cov;
+ Array<SpikeObject> spikes;
+ float *pc1, *pc2;
+ float *pc1min, *pc2min, *pc1max, *pc2max;
+ bool *reportDone;
+private:
+ int svdcmp(float **a, int nRows, int nCols, float *w, float **v);
+ float pythag(float a, float b);
+ int dim;
+};
+
+
+class cPolygon
+{
+public:
+ cPolygon();
+ bool isPointInside(PointD p);
+ std::vector<PointD> pts;
+ PointD offset;
+};
+
+
+
+class PCAcomputingThread : juce::Thread
+{
+public:
+ PCAcomputingThread();
+ void run(); // computes PCA on waveforms
+ void addPCAjob(PCAjob job);
+
+ std::queue<PCAjob> jobs;
+};
+
+class PCAUnit
+{
+public:
+ PCAUnit();
+ PCAUnit(int ID, int localID);
+ PCAUnit(cPolygon B, int ID, int localID_);
+ ~PCAUnit();
+ int getUnitID();
+ int getLocalID();
+ bool isWaveFormInsidePolygon(SpikeObject *so);
+ bool isPointInsidePolygon(PointD p);
+ void resizeWaveform(int newlength);
+ void updateWaveform(SpikeObject *so);
+public:
+ int UnitID;
+ int localID; // used internally, for colors and position.
+ cPolygon poly;
+ uint8_t ColorRGB[3];
+ RunningStats WaveformStat;
+ bool Active;
+ juce::int64 Activated_TS_S;
+ Time timer;
+};
+
+// Sort spikes from a single electrode (which could have any number of channels)
+// using the box method. Any electrode could have an arbitrary number of units specified.
+// Each unit is defined by a set of boxes, which can be placed on any of the given channels.
+class SpikeSortBoxes
+{
+public:
+ SpikeSortBoxes(UniqueIDgenerator *uniqueIDgenerator_, PCAcomputingThread *pth, int numch, double SamplingRate, int WaveFormLength);
+ ~SpikeSortBoxes();
+
+ void resizeWaveform(int numSamples);
+
+
+ void projectOnPrincipalComponents(SpikeObject *so);
+ bool sortSpike(SpikeObject *so, bool PCAfirst);
+ void RePCA();
+ void addPCAunit(PCAUnit unit);
+ int addBoxUnit(int channel);
+ int addBoxUnit(int channel, Box B);
+
+ void getPCArange(float &p1min,float &p2min, float &p1max, float &p2max);
+ void setPCArange(float p1min,float p2min, float p1max, float p2max);
+ void resetJobStatus();
+ bool isPCAfinished();
+
+ bool removeUnit(int unitID);
+
+ void removeAllUnits();
+ bool addBoxToUnit(int channel, int unitID);
+ bool addBoxToUnit(int channel, int unitID, Box B);
+ bool removeBoxFromUnit(int unitID, int boxIndex);
+ int getNumBoxes(int unitID);
+ std::vector<Box> getUnitBoxes(int unitID);
+ std::vector<BoxUnit> getBoxUnits();
+ std::vector<PCAUnit> getPCAUnits();
+
+ void getUnitColor(int UnitID, uint8 &R, uint8 &G, uint8 &B);
+ void updateBoxUnits(std::vector<BoxUnit> _units);
+ void updatePCAUnits(std::vector<PCAUnit> _units);
+ int generateUnitID();
+ int generateLocalID();
+ void generateNewIDs();
+ void setSelectedUnitAndBox(int unitID, int boxID);
+ void getSelectedUnitAndBox(int &unitID, int &boxid);
+ void saveCustomParametersToXml(XmlElement *electrodeNode);
+ void loadCustomParametersFromXml(XmlElement *electrodeNode);
+private:
+ //void StartCriticalSection();
+ //void EndCriticalSection();
+ UniqueIDgenerator* uniqueIDgenerator;
+ int numChannels, waveformLength;
+ int selectedUnit, selectedBox;
+ CriticalSection mut;
+ std::vector<BoxUnit> boxUnits;
+ std::vector<PCAUnit> pcaUnits;
+ float *pc1, *pc2;
+ float pc1min, pc2min, pc1max, pc2max;
+ Array<SpikeObject> spikeBuffer;
+ int bufferSize,spikeBufferIndex;
+ PCAcomputingThread *computingThread;
+ bool bPCAJobSubmitted,bPCAcomputed,bRePCA,bPCAjobFinished ;
+
+
+};
+
+#endif // __SPIKESORTBOXES_H
diff --git a/Source/Processors/SpikeSorter/SpikeSorter.cpp b/Source/Processors/SpikeSorter/SpikeSorter.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..ffbc1bd466cab205055211fb93f972c6f0c6e48f
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorter.cpp
@@ -0,0 +1,1804 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include <stdio.h>
+#include "SpikeSorter.h"
+#include "SpikeSortBoxes.h"
+#include "SpikeSorterCanvas.h"
+#include "../Channel/Channel.h"
+#include "../SpikeDisplayNode/SpikeDisplayNode.h"
+
+class spikeSorter;
+
+SpikeSorter::SpikeSorter()
+ : GenericProcessor("Spike Sorter"),
+ overflowBuffer(2,100), dataBuffer(nullptr),
+ overflowBufferSize(100), currentElectrode(-1),
+ numPreSamples(8),numPostSamples(32)
+{
+ uniqueID = 0; // for electrode count
+ uniqueSpikeID = 0;
+ juce::Time timer;
+ ticksPerSec = (float) timer.getHighResolutionTicksPerSecond();
+ electrodeTypes.clear();
+ electrodeCounter.clear();
+ spikeBuffer = new uint8_t[MAX_SPIKE_BUFFER_LEN]; // MAX_SPIKE_BUFFER_LEN defined in SpikeObject.h
+ channelBuffers=nullptr;
+ PCAbeforeBoxes = true;
+ autoDACassignment = true;
+ syncThresholds = false;
+ flipSignal = false;
+}
+
+bool SpikeSorter::getFlipSignalState()
+{
+ return flipSignal;
+}
+
+
+void SpikeSorter::setFlipSignalState(bool state)
+{
+ flipSignal = state;
+
+ mut.enter();
+ if (currentElectrode >= 0)
+ {
+ if (electrodes[currentElectrode]->spikePlot != nullptr)
+ electrodes[currentElectrode]->spikePlot->setFlipSignal(state);
+
+ }
+ mut.exit();
+
+}
+
+int SpikeSorter::getNumPreSamples()
+{
+ return numPreSamples;
+}
+
+int SpikeSorter::getNumPostSamples()
+{
+ return numPostSamples;
+}
+
+bool SpikeSorter::getAutoDacAssignmentStatus()
+{
+ return autoDACassignment;
+}
+
+bool SpikeSorter::getThresholdSyncStatus()
+{
+ return syncThresholds;
+}
+
+void SpikeSorter::setThresholdSyncStatus(bool status)
+{
+ syncThresholds= status;
+}
+
+
+void SpikeSorter::seteAutoDacAssignment(bool status)
+{
+ autoDACassignment = status;
+}
+
+void SpikeSorter::setNumPreSamples(int numSamples)
+{
+ // we need to update all electrodes, and also inform other modules that this has happened....
+ numPreSamples = numSamples;
+
+ for (int k = 0; k < electrodes.size(); k++)
+ {
+ electrodes[k]->resizeWaveform(numPreSamples,numPostSamples);
+ }
+
+}
+
+void SpikeSorter::setNumPostSamples(int numSamples)
+{
+ numPostSamples = numSamples;
+ for (int k = 0; k < electrodes.size(); k++)
+ {
+ electrodes[k]->resizeWaveform(numPreSamples,numPostSamples);
+ }
+}
+
+
+int SpikeSorter::getUniqueProbeID(String type)
+{
+ for (int i = 0; i < electrodeTypes.size(); i++)
+ {
+ if (electrodeTypes[i] == type)
+ {
+ return electrodeCounter[i];
+ }
+ }
+ // if we reached here, we didn't find the type. Add it.
+ electrodeTypes.push_back(type);
+ electrodeCounter.push_back(1);
+ return 1;
+}
+
+
+void SpikeSorter::increaseUniqueProbeID(String type)
+{
+ for (int i = 0; i < electrodeTypes.size(); i++)
+ {
+ if (electrodeTypes[i] == type)
+ {
+ electrodeCounter[i]++;
+ }
+ }
+}
+
+
+
+SpikeSorter::~SpikeSorter()
+{
+ delete spikeBuffer;
+ spikeBuffer = nullptr;
+
+ if (channelBuffers != nullptr)
+ delete channelBuffers;
+
+}
+
+
+
+AudioProcessorEditor* SpikeSorter::createEditor()
+{
+ editor = new SpikeSorterEditor(this, true);
+
+ return editor;
+}
+
+void SpikeSorter::updateSettings()
+{
+
+ mut.enter();
+ int numChannels = getNumInputs();
+ if (numChannels > 0)
+ overflowBuffer.setSize(getNumInputs(), overflowBufferSize);
+
+ if (channelBuffers != nullptr)
+ delete channelBuffers;
+
+ double SamplingRate = getSampleRate();;
+ double ContinuousBufferLengthSec = 5;
+ channelBuffers = new ContinuousCircularBuffer(numChannels,SamplingRate,1, ContinuousBufferLengthSec);
+
+ for (int i = 0; i < electrodes.size(); i++)
+ {
+
+ Channel* ch = new Channel(this, i);
+ //ch->isEventChannel = true;
+ ch->eventType = SPIKE_BASE_CODE + electrodes[i]->numChannels;
+ ch->name = electrodes[i]->name;
+
+ eventChannels.add(ch);
+ // String eventlog = "NewElectrode "+String(electrodes[k]->electrodeID) + " "+String(electrodes[k]->numChannels)+" ";
+ // for (int j=0;j<electrodes[k]->numChannels;j++)
+ // eventlog += String(electrodes[k]->channels[j])+ " "+electrodes[k]->name;
+ // //addNetworkEventToQueue(StringTS(eventlog));
+ }
+
+ mut.exit();
+}
+
+
+Electrode::~Electrode()
+{
+ delete thresholds;
+ delete isActive;
+ delete voltageScale;
+ delete channels;
+ delete spikeSort;
+}
+
+Electrode::Electrode(int ID, UniqueIDgenerator *uniqueIDgenerator_, PCAcomputingThread *pth, String _name, int _numChannels, int *_channels, float default_threshold, int pre, int post, float samplingRate )
+{
+ electrodeID = ID;
+ computingThread = pth;
+ uniqueIDgenerator = uniqueIDgenerator_;
+ name = _name;
+
+ numChannels = _numChannels;
+ prePeakSamples = pre;
+ postPeakSamples = post;
+
+ thresholds = new double[numChannels];
+ isActive = new bool[numChannels];
+ channels = new int[numChannels];
+ voltageScale = new double[numChannels];
+ depthOffsetMM = 0.0;
+
+ advancerID = -1;
+
+ for (int i = 0; i < numChannels; i++)
+ {
+ channels[i] = _channels[i];
+ thresholds[i] = default_threshold;
+ isActive[i] = true;
+ voltageScale[i] = 500;
+ }
+ spikePlot = nullptr;
+
+ if (computingThread != nullptr)
+ spikeSort = new SpikeSortBoxes(uniqueIDgenerator, computingThread, numChannels, samplingRate, pre+post);
+ else
+ spikeSort = nullptr;
+
+ isMonitored = false;
+}
+
+void Electrode::resizeWaveform(int numPre, int numPost)
+{
+ // update electrode and all sorted units....
+ // we can't keep pca space anymore, so we discard of all pca units (?)
+ prePeakSamples = numPre;
+ postPeakSamples = numPost;
+
+ //spikePlot = nullptr;
+ spikeSort->resizeWaveform(prePeakSamples+postPeakSamples);
+
+}
+
+void SpikeSorter::setElectrodeVoltageScale(int electrodeID, int index, float newvalue)
+{
+ std::vector<float> values;
+ mut.enter();
+ for (int k=0;k<electrodes.size();k++)
+ {
+ if (electrodes[k]->electrodeID == electrodeID)
+ {
+ electrodes[k]->voltageScale[index] = newvalue;
+ mut.exit();
+ return;
+ }
+ }
+ mut.exit();
+}
+
+std::vector<float> SpikeSorter::getElectrodeVoltageScales(int electrodeID)
+{
+ std::vector<float> values;
+ mut.enter();
+ for (int k=0;k<electrodes.size();k++)
+ {
+ if (electrodes[k]->electrodeID == electrodeID)
+ {
+ values.resize(electrodes[k]->numChannels);
+ for (int i=0;i<electrodes[k]->numChannels;i++)
+ {
+ values[i] = electrodes[k]->voltageScale[i];
+ }
+ mut.exit();
+ return values;
+ }
+ }
+ mut.exit();
+ return values;
+}
+
+// void SpikeSorter::setElectrodeAdvancerOffset(int i, double v)
+// {
+// mut.enter();
+// if (i >= 0)
+// {
+// electrodes[i]->depthOffsetMM = v;
+// addNetworkEventToQueue(StringTS("NewElectrodeDepthOffset "+String(electrodes[i]->electrodeID)+" "+String(v,4)));
+// }
+// mut.exit();
+// }
+
+// void SpikeSorter::setElectrodeAdvancer(int i, int ID)
+// {
+// mut.enter();
+// if (i >= 0)
+// {
+// electrodes[i]->advancerID = ID;
+// }
+// mut.exit();
+// }
+
+void SpikeSorter::addNewUnit(int electrodeID, int newUnitID, uint8 r, uint8 g, uint8 b)
+{
+ String eventlog = "NewUnit "+String(electrodeID) + " "+String(newUnitID)+" "+String(r)+" "+String(g)+" "+String(b);
+ //addNetworkEventToQueue(StringTS(eventlog));
+ //updateSinks( electrodeID, newUnitID, r,g,b,true);
+}
+
+void SpikeSorter::removeUnit(int electrodeID, int unitID)
+{
+ String eventlog = "RemoveUnit "+String(electrodeID) + " "+String(unitID);
+ //addNetworkEventToQueue(StringTS(eventlog));
+ //updateSinks( electrodeID, unitID, 0,0,0,false);
+
+}
+
+
+void SpikeSorter::removeAllUnits(int electrodeID)
+{
+ String eventlog = "RemoveAllUnits "+String(electrodeID);
+ //addNetworkEventToQueue(StringTS(eventlog));
+ //updateSinks( electrodeID,true);
+}
+
+RHD2000Thread* SpikeSorter::getRhythmAccess()
+{
+
+ ProcessorGraph *gr = getProcessorGraph();
+ Array<GenericProcessor*> p = gr->getListOfProcessors();
+ for (int k=0;k<p.size();k++)
+ {
+ if (p[k]->getName() == "Rhythm FPGA")
+ {
+ SourceNode* src = (SourceNode* )p[k];
+ return (RHD2000Thread*)src->getThread();
+ }
+ }
+ return nullptr;
+}
+
+void SpikeSorter::updateDACthreshold(int dacChannel, float threshold)
+{
+ RHD2000Thread* th = getRhythmAccess();
+ if (th != nullptr)
+ {
+ th->setDACthreshold(dacChannel,threshold);
+ }
+}
+
+Array<int> SpikeSorter::getDACassignments()
+{
+ Array<int> dacChannels ;
+ RHD2000Thread* th = getRhythmAccess();
+ if (th != nullptr)
+ {
+ dacChannels = th->getDACchannels();
+ }
+ return dacChannels;
+}
+
+int SpikeSorter::getDACassignment(int dacchannel)
+{
+ RHD2000Thread* th = getRhythmAccess();
+ if (th != nullptr)
+ {
+ Array<int> dacChannels = th->getDACchannels();
+ return dacChannels[dacchannel];
+ }
+
+ return -1; // not assigned
+}
+
+void SpikeSorter::assignDACtoChannel(int dacOutput, int channel)
+{
+ // inform sinks about a new unit
+ //getSourceNode()
+ RHD2000Thread* th = getRhythmAccess();
+ if (th != nullptr)
+ {
+ th->setDACchannel(dacOutput, channels[channel]->originalStream, channels[channel]->originalChannel);
+ }
+}
+
+void SpikeSorter::addElectrode(Electrode* newElectrode)
+{
+ mut.enter();
+ resetElectrode(newElectrode);
+ electrodes.add(newElectrode);
+ // inform PSTH sink, if it exists, about this new electrode.
+ //updateSinks(newElectrode);
+ mut.exit();
+}
+
+bool SpikeSorter::addElectrode(int nChans, String name, double Depth)
+{
+
+ mut.enter();
+ int firstChan;
+
+ if (electrodes.size() == 0)
+ {
+ firstChan = 0;
+ }
+ else
+ {
+ Electrode* e = electrodes.getLast();
+ firstChan = *(e->channels + (e->numChannels - 1)) + 1;
+ }
+
+ if (firstChan + nChans > getNumInputs())
+ {
+ mut.exit();
+ return false;
+ }
+
+ int *channels = new int[nChans];
+ for (int k = 0; k < nChans; k++)
+ channels[k] = firstChan + k;
+
+ Electrode* newElectrode = new Electrode(++uniqueID, &uniqueIDgenerator, &computingThread, name, nChans, channels, getDefaultThreshold(),
+ numPreSamples, numPostSamples, getSampleRate());
+
+ newElectrode->depthOffsetMM = Depth;
+ String log = "Added electrode (ID "+ String(uniqueID)+") with " + String(nChans) + " channels." ;
+ std::cout << log << std::endl;
+ String eventlog = "NewElectrode "+ String(uniqueID) + " " + String(nChans) + " ";
+ for (int k = 0; k < nChans; k++)
+ eventlog += String(channels[k])+ " " + name;
+
+ //addNetworkEventToQueue(StringTS(eventlog));
+
+ resetElectrode(newElectrode);
+ electrodes.add(newElectrode);
+ //updateSinks(newElectrode);
+ setCurrentElectrodeIndex(electrodes.size()-1);
+ mut.exit();
+ return true;
+
+}
+
+float SpikeSorter::getDefaultThreshold()
+{
+ return -20.0f;
+}
+
+StringArray SpikeSorter::getElectrodeNames()
+{
+ StringArray names;
+ mut.enter();
+ for (int i = 0; i < electrodes.size(); i++)
+ {
+ names.add(electrodes[i]->name);
+ }
+ mut.exit();
+ return names;
+}
+
+void SpikeSorter::resetElectrode(Electrode* e)
+{
+ e->lastBufferIndex = 0;
+}
+
+bool SpikeSorter::removeElectrode(int index)
+{
+ mut.enter();
+ // std::cout << "Spike detector removing electrode" << std::endl;
+
+ if (index > electrodes.size() || index < 0) {
+ mut.exit();
+ return false;
+ }
+
+
+ String log = "Removing electrode (ID " + String(electrodes[index]->electrodeID)+")";
+ std::cout << log <<std::endl;
+
+ String eventlog = "RemoveElectrode " + String(electrodes[index]->electrodeID);
+ //addNetworkEventToQueue(StringTS(eventlog));
+
+ int idToRemove = electrodes[index]->electrodeID;
+ electrodes.remove(index);
+
+ //(idToRemove);
+
+ if (electrodes.size() > 0)
+ currentElectrode = electrodes.size()-1;
+ else
+ currentElectrode = -1;
+
+ mut.exit();
+ return true;
+}
+
+void SpikeSorter::setElectrodeName(int index, String newName)
+{
+ mut.enter();
+ if ((electrodes.size() > 0) && (index > 0))
+ electrodes[index-1]->name = newName;
+ //updateSinks(electrodes[index-1]->electrodeID, newName);
+ mut.exit();
+}
+
+void SpikeSorter::setChannel(int electrodeIndex, int channelNum, int newChannel)
+{
+ mut.enter();
+ String log = "Setting electrode " + String(electrodeIndex) + " channel " + String( channelNum )+
+ " to " + String( newChannel );
+ std::cout << log<< std::endl;
+
+
+
+ String eventlog = "ChanelElectrodeChannel " + String(electrodes[electrodeIndex]->electrodeID) + " " + String(channelNum) + " " + String(newChannel);
+ //addNetworkEventToQueue(StringTS(eventlog));
+
+ //updateSinks(electrodes[electrodeIndex]->electrodeID, channelNum,newChannel);
+
+ *(electrodes[electrodeIndex]->channels+channelNum) = newChannel;
+ mut.exit();
+}
+
+int SpikeSorter::getNumChannels(int index)
+{
+ mut.enter();
+ int i=electrodes[index]->numChannels;
+ mut.exit();
+ return i;
+}
+
+int SpikeSorter::getChannel(int index, int i)
+{
+ mut.enter();
+ int ii=*(electrodes[index]->channels+i);
+ mut.exit();
+ return ii;
+}
+
+
+void SpikeSorter::setChannelActive(int electrodeIndex, int subChannel, bool active)
+{
+
+ currentElectrode = electrodeIndex;
+ currentChannelIndex = subChannel;
+
+ if (active)
+ setParameter(98, 1);
+ else
+ setParameter(98, 0);
+
+ //getEditorViewport()->makeEditorVisible(this, true, true);
+}
+
+bool SpikeSorter::isChannelActive(int electrodeIndex, int i)
+{
+ mut.enter();
+ bool b= *(electrodes[electrodeIndex]->isActive+i);
+ mut.exit();
+ return b;
+}
+
+
+void SpikeSorter::setChannelThreshold(int electrodeNum, int channelNum, float thresh)
+{
+ mut.enter();
+ currentElectrode = electrodeNum;
+ currentChannelIndex = channelNum;
+ electrodes[electrodeNum]->thresholds[channelNum] = thresh;
+ if (electrodes[electrodeNum]->spikePlot != nullptr)
+ electrodes[electrodeNum]->spikePlot->setDisplayThresholdForChannel(channelNum,thresh);
+
+ if (syncThresholds)
+ {
+ for (int k=0;k<electrodes.size();k++)
+ {
+ for (int i=0;i<electrodes[k]->numChannels;i++)
+ {
+ electrodes[k]->thresholds[i] = thresh;
+ }
+ }
+ }
+
+ mut.exit();
+ setParameter(99, thresh);
+}
+
+double SpikeSorter::getChannelThreshold(int electrodeNum, int channelNum)
+{
+ mut.enter();
+ double f= *(electrodes[electrodeNum]->thresholds+channelNum);
+ mut.exit();
+ return f;
+}
+
+void SpikeSorter::setParameter(int parameterIndex, float newValue)
+{
+ //editor->updateParameterButtons(parameterIndex);
+ mut.enter();
+ if (parameterIndex == 99 && currentElectrode > -1)
+ {
+ *(electrodes[currentElectrode]->thresholds+currentChannelIndex) = newValue;
+ }
+ else if (parameterIndex == 98 && currentElectrode > -1)
+ {
+ if (newValue == 0.0f)
+ *(electrodes[currentElectrode]->isActive+currentChannelIndex) = false;
+ else
+ *(electrodes[currentElectrode]->isActive+currentChannelIndex) = true;
+ }
+ mut.exit();
+}
+
+
+bool SpikeSorter::enable()
+{
+
+ useOverflowBuffer = false;
+ SpikeSorterEditor* editor = (SpikeSorterEditor*) getEditor();
+ editor->enable();
+
+ return true;
+}
+
+
+bool SpikeSorter::isReady()
+{
+ return true;
+}
+
+
+bool SpikeSorter::disable()
+{
+ mut.enter();
+ for (int n = 0; n < electrodes.size(); n++)
+ {
+ resetElectrode(electrodes[n]);
+ }
+ //editor->disable();
+ mut.exit();
+ return true;
+}
+
+Electrode* SpikeSorter::getActiveElectrode()
+{
+ if (electrodes.size() == 0)
+ return nullptr;
+
+ return electrodes[currentElectrode];
+}
+
+
+void SpikeSorter::addSpikeEvent(SpikeObject* s, MidiBuffer& eventBuffer, int peakIndex)
+{
+
+ // std::cout << "Adding spike event for index " << peakIndex << std::endl;
+
+ s->eventType = SPIKE_EVENT_CODE;
+
+ int numBytes = packSpike(s, // SpikeObject
+ spikeBuffer, // uint8_t*
+ MAX_SPIKE_BUFFER_LEN); // int
+
+ if (numBytes > 0)
+ eventBuffer.addEvent(spikeBuffer, numBytes, peakIndex);
+
+ //std::cout << "Adding spike" << std::endl;
+}
+
+void SpikeSorter::addWaveformToSpikeObject(SpikeObject* s,
+ int& peakIndex,
+ int& electrodeNumber,
+ int& currentChannel)
+{
+ mut.enter();
+ int spikeLength = electrodes[electrodeNumber]->prePeakSamples +
+ + electrodes[electrodeNumber]->postPeakSamples;
+
+ s->timestamp = hardware_timestamp + peakIndex;
+
+ // convert sample offset to software ticks
+ float samplesPerSec = getSampleRate();
+ s->timestamp_software = software_timestamp + int64( ticksPerSec*float(peakIndex)/samplesPerSec);
+ s->nSamples = spikeLength;
+
+ int chan = *(electrodes[electrodeNumber]->channels+currentChannel);
+
+ s->gain[currentChannel] = (1.0f / channels[chan]->getChannelGain())*1000;
+ s->threshold[currentChannel] = (int) electrodes[electrodeNumber]->thresholds[currentChannel];
+
+ // cycle through buffer
+
+ if (isChannelActive(electrodeNumber, currentChannel))
+ {
+
+ for (int sample = 0; sample < spikeLength; sample++)
+ {
+
+ // warning -- be careful of bitvolts conversion
+ // do not flip signal (!).
+ float value = getNextSample(electrodes[electrodeNumber]->channels[currentChannel]);
+ s->data[currentIndex] = uint16(jmin(65535,jmax(0, int(value / channels[chan]->getChannelGain()) + 32768)));
+ // recovered data
+ //float value2 = (s->data[currentIndex]-32768) /float(s->gain[currentChannel])*1000.0f;
+
+ currentIndex++;
+ sampleIndex++;
+
+ //std::cout << currentIndex << std::endl;
+
+ }
+ }
+ else
+ {
+ for (int sample = 0; sample < spikeLength; sample++)
+ {
+
+ // insert a blank spike if the
+ s->data[currentIndex] = 0;
+ currentIndex++;
+ sampleIndex++;
+
+ //std::cout << currentIndex << std::endl;
+
+ }
+ }
+
+
+ sampleIndex -= spikeLength; // reset sample index
+ mut.exit();
+
+}
+
+void SpikeSorter::startRecording()
+{
+ // send status messages about which electrodes and units are available.
+ mut.enter();
+ for (int k=0;k<electrodes.size();k++)
+ {
+ String eventlog = "CurrentElectrodes "+String(electrodes[k]->electrodeID) + " "+ String(electrodes[k]->advancerID) + " "+String(electrodes[k]->depthOffsetMM) + " "+
+ String(electrodes[k]->numChannels) + " ";
+ for (int i=0;i<electrodes[k]->numChannels;i++)
+ {
+ eventlog += String(electrodes[k]->channels[i])+ " " + electrodes[k]->name;
+ }
+ //addNetworkEventToQueue(StringTS(eventlog));
+
+ std::vector<BoxUnit> boxUnits = electrodes[k]->spikeSort->getBoxUnits();
+ for (int i=0;i<boxUnits.size();i++)
+ {
+ String eventlog = "CurrentElectrodeUnits "+String(electrodes[k]->electrodeID) + " " + String(boxUnits[i].UnitID);
+ }
+
+ std::vector<PCAUnit> pcaUnits = electrodes[k]->spikeSort->getPCAUnits();
+ for (int i=0;i<pcaUnits.size();i++)
+ {
+ String eventlog = "CurrentElectrodeUnits "+String(electrodes[k]->electrodeID) + " " + String(pcaUnits[i].UnitID);
+ }
+
+ }
+
+ mut.exit();
+}
+
+// int64 SpikeSorter::getExtrapolatedHardwareTimestamp(int64 softwareTS)
+// {
+// Time timer;
+// // this is the case in which messages arrived before the data stream started....
+// if (hardware_timestamp == 0)
+// return 0;
+
+// // compute how many ticks passed since the last known software-hardware pair
+// int64 ticksPassed = software_timestamp-softwareTS;
+// float secondPassed = (float)ticksPassed / timer.getHighResolutionTicksPerSecond();
+// // adjust hardware stamp accordingly
+// return hardware_timestamp + secondPassed*getSampleRate();
+// }
+
+
+
+
+// void SpikeSorter::postTimestamppedStringToMidiBuffer(StringTS s, MidiBuffer& events)
+// {
+// uint8* msg_with_ts = new uint8[s.len+8]; // for the two timestamps
+// memcpy(msg_with_ts, s.str, s.len);
+// memcpy(msg_with_ts+s.len, &s.timestamp, 8);
+
+// addEvent(events, // eventBuffer
+// (uint8) NETWORK, // type
+// 0, // sampleNum
+// 0, // eventId
+// (uint8) GENERIC_EVENT, // eventChannel
+// (uint8) s.len+8, // numBytes
+// msg_with_ts); // eventData
+
+// delete msg_with_ts;
+// }
+
+void SpikeSorter::handleEvent(int eventType, MidiMessage& event, int sampleNum)
+{
+ if (eventType == TIMESTAMP)
+ {
+ const uint8* dataptr = event.getRawData();
+ memcpy(&hardware_timestamp, dataptr + 4, 8); // remember to skip first four bytes
+ memcpy(&software_timestamp, dataptr + 12, 8); // remember to skip first four bytes
+ }
+}
+
+// void SpikeSorter::addNetworkEventToQueue(StringTS S)
+// {
+// StringTS copy(S);
+// getUIComponent()->getLogWindow()->addLineToLog(copy.getString());
+// eventQueue.push(copy);
+// }
+
+
+// void SpikeSorter::postEventsInQueue(MidiBuffer& events)
+// {
+// while (eventQueue.size() > 0)
+// {
+// StringTS msg = eventQueue.front();
+// postTimestamppedStringToMidiBuffer(msg,events);
+// eventQueue.pop();
+// }
+// }
+
+void SpikeSorter::process(AudioSampleBuffer& buffer,
+ MidiBuffer& events,
+ int& nSamples)
+{
+
+ //printf("Entering Spike Detector::process\n");
+ mut.enter();
+ uint16_t samplingFrequencyHz = getSampleRate();//buffer.getSamplingFrequency();
+ // cycle through electrodes
+ Electrode* electrode;
+ dataBuffer = &buffer;
+
+ checkForEvents(events); // find latest's packet timestamps
+
+ //postEventsInQueue(events);
+
+ channelBuffers->update(buffer, hardware_timestamp,software_timestamp,nSamples);
+
+ for (int i = 0; i < electrodes.size(); i++)
+ {
+
+ // std::cout << "ELECTRODE " << i << std::endl;
+
+ electrode = electrodes[i];
+
+ // refresh buffer index for this electrode
+ sampleIndex = electrode->lastBufferIndex - 1; // subtract 1 to account for
+ // increment at start of getNextSample()
+
+ // cycle through samples
+ while (samplesAvailable(nSamples))
+ {
+
+ sampleIndex++;
+
+ // cycle through channels
+ for (int chan = 0; chan < electrode->numChannels; chan++)
+ {
+
+ // std::cout << " channel " << chan << std::endl;
+
+ if (*(electrode->isActive+chan))
+ {
+ //float v = getNextSample(currentChannel);
+
+ int currentChannel = electrode->channels[chan];
+
+ bool bSpikeDetectedPositive = electrode->thresholds[chan] > 0 &&
+ (getNextSample(currentChannel) > electrode->thresholds[chan]); // rising edge
+ bool bSpikeDetectedNegative = electrode->thresholds[chan] < 0 &&
+ (getNextSample(currentChannel) < electrode->thresholds[chan]); // falling edge
+
+ if (bSpikeDetectedPositive || bSpikeDetectedNegative)
+ {
+
+ //std::cout << "Spike detected on electrode " << i << std::endl;
+ // find the peak
+ int peakIndex = sampleIndex;
+
+ //if (sampleIndex == 0 && i == 0)
+ // std::cout << getCurrentSample(currentChannel) << std::endl;
+
+ if (bSpikeDetectedPositive)
+ {
+ // find localmaxima
+ while (getCurrentSample(currentChannel) < getNextSample(currentChannel) &&
+ sampleIndex < peakIndex + electrode->postPeakSamples)
+ {
+ sampleIndex++;
+ }
+ } else {
+ // find local minimum
+
+ while (getCurrentSample(currentChannel) > getNextSample(currentChannel) &&
+ sampleIndex < peakIndex + electrode->postPeakSamples)
+ {
+ sampleIndex++;
+ }
+ }
+
+ peakIndex = sampleIndex;
+ sampleIndex -= (electrode->prePeakSamples+1);
+
+ SpikeObject newSpike;
+ newSpike.sortedId = 0; // unsorted.
+ newSpike.timestamp = peakIndex;
+ newSpike.electrodeID = electrode->electrodeID;
+ newSpike.channel = chan;
+ newSpike.source = i;
+ newSpike.nChannels = electrode->numChannels;
+ newSpike.samplingFrequencyHz = samplingFrequencyHz;
+ newSpike.color[0] = newSpike.color[1] = newSpike.color[2] = 127;
+ currentIndex = 0;
+
+ // package spikes;
+ for (int channel = 0; channel < electrode->numChannels; channel++)
+ {
+
+ addWaveformToSpikeObject(&newSpike,
+ peakIndex,
+ i,
+ channel);
+
+ //std::cout << "adding waveform" << std::endl;
+ }
+
+ /*
+ bool perfectMatch = true;
+ for (int k=0;k<40;k++) {
+ perfectMatch = perfectMatch & (prevSpike.data[k] == newSpike.data[k]);
+ }
+ if (perfectMatch)
+ {
+ int x;
+ x++;
+ }
+ */
+
+ //for (int xxx = 0; xxx < 1000; xxx++) // overload with spikes for testing purposes
+ electrode->spikeSort->projectOnPrincipalComponents(&newSpike);
+
+ // Add spike to drawing buffer....
+ electrode->spikeSort->sortSpike(&newSpike, PCAbeforeBoxes);
+
+
+ // transfer buffered spikes to spike plot
+ if (electrode->spikePlot != nullptr) {
+ if (electrode->spikeSort->isPCAfinished())
+ {
+ electrode->spikeSort->resetJobStatus();
+ float p1min,p2min, p1max, p2max;
+ electrode->spikeSort->getPCArange(p1min,p2min, p1max, p2max);
+ electrode->spikePlot->setPCARange(p1min,p2min, p1max, p2max);
+ }
+
+
+ electrode->spikePlot->processSpikeObject(newSpike);
+ }
+
+
+ addSpikeEvent(&newSpike, events, peakIndex);
+ //prevSpike = newSpike;
+ // advance the sample index
+ sampleIndex = peakIndex + electrode->postPeakSamples;
+
+ break; // quit spike "for" loop
+ } // end spike trigger
+
+ } // end if channel is active
+ } // end cycle through channels on electrode
+
+
+ } // end cycle through samples
+
+ //float vv = getNextSample(currentChannel);
+ electrode->lastBufferIndex = sampleIndex - nSamples; // should be negative
+
+ //jassert(electrode->lastBufferIndex < 0);
+
+ } // end cycle through electrodes
+
+ // copy end of this buffer into the overflow buffer
+
+ //std::cout << "Copying buffer" << std::endl;
+ // std::cout << "nSamples: " << nSamples;
+ //std::cout << "overflowBufferSize:" << overflowBufferSize;
+
+ //std::cout << "sourceStartSample = " << nSamples-overflowBufferSize << std::endl;
+ // std::cout << "numSamples = " << overflowBufferSize << std::endl;
+ // std::cout << "buffer size = " << buffer.getNumSamples() << std::endl;
+
+ if (nSamples > overflowBufferSize)
+ {
+
+ for (int i = 0; i < overflowBuffer.getNumChannels(); i++)
+ {
+
+ overflowBuffer.copyFrom(i, 0,
+ buffer, i,
+ nSamples-overflowBufferSize,
+ overflowBufferSize);
+
+
+ useOverflowBuffer = true;
+ }
+
+ }
+ else
+ {
+
+ useOverflowBuffer = false;
+ }
+
+
+ mut.exit();
+ //printf("Exitting Spike Detector::process\n");
+}
+
+float SpikeSorter::getNextSample(int& chan)
+{
+
+
+
+ //if (useOverflowBuffer)
+ //{
+ if (sampleIndex < 0)
+ {
+ // std::cout << " sample index " << sampleIndex << "from overflowBuffer" << std::endl;
+ int ind = overflowBufferSize + sampleIndex;
+
+ if (ind < overflowBuffer.getNumSamples())
+ return (*overflowBuffer.getReadPointer(chan, ind));
+ else
+ return 0;
+
+ }
+ else
+ {
+ // useOverflowBuffer = false;
+ // std::cout << " sample index " << sampleIndex << "from regular buffer" << std::endl;
+
+ if (sampleIndex < dataBuffer->getNumSamples())
+ return (*dataBuffer->getReadPointer(chan, sampleIndex));
+ else
+ return 0;
+ }
+ //} else {
+ // std::cout << " sample index " << sampleIndex << "from regular buffer" << std::endl;
+ // return *dataBuffer.getSampleData(chan, sampleIndex);
+ //}
+
+}
+
+float SpikeSorter::getCurrentSample(int& chan)
+{
+
+ // if (useOverflowBuffer)
+ // {
+ // return *overflowBuffer.getSampleData(chan, overflowBufferSize + sampleIndex - 1);
+ // } else {
+ // return *dataBuffer.getSampleData(chan, sampleIndex - 1);
+ // }
+
+ if (sampleIndex < 1)
+ {
+ //std::cout << " sample index " << sampleIndex << "from overflowBuffer" << std::endl;
+ return (*overflowBuffer.getReadPointer(chan, overflowBufferSize + sampleIndex - 1)) ;
+ }
+ else
+ {
+ // useOverflowBuffer = false;
+ // std::cout << " sample index " << sampleIndex << "from regular buffer" << std::endl;
+ return (*dataBuffer->getReadPointer(chan, sampleIndex - 1));
+ }
+ //} else {
+
+}
+
+
+bool SpikeSorter::samplesAvailable(int& nSamples)
+{
+
+ if (sampleIndex > nSamples - overflowBufferSize/2)
+ {
+ return false;
+ }
+ else
+ {
+ return true;
+ }
+
+}
+
+void SpikeSorter::addProbes(String probeType,int numProbes, int nElectrodesPerProbe, int nChansPerElectrode, double firstContactOffset, double interelectrodeDistance)
+{
+ for (int probeIter=0;probeIter<numProbes;probeIter++)
+ {
+ int probeCounter = getUniqueProbeID(probeType);
+ for (int electrodeIter=0;electrodeIter<nElectrodesPerProbe;electrodeIter++)
+ {
+ double depth = firstContactOffset - electrodeIter*interelectrodeDistance;
+ String name;
+ if (nElectrodesPerProbe > 1)
+ name = probeType + " " + String(probeCounter) + " ["+String(electrodeIter+1)+"/"+String(nElectrodesPerProbe)+"]";
+ else
+ name = probeType + " " + String(probeCounter);
+
+ bool successful = addElectrode(nChansPerElectrode, name, depth);
+ if (!successful) {
+ sendActionMessage("Not enough channels to add electrode.");
+ return;
+ }
+ }
+ increaseUniqueProbeID(probeType);
+ }
+}
+Array<Electrode*> SpikeSorter::getElectrodes()
+{
+ return electrodes;
+}
+
+// double SpikeSorter::getAdvancerPosition(int advancerID)
+// {
+// ProcessorGraph *g = getProcessorGraph();
+// Array<GenericProcessor*> p = g->getListOfProcessors();
+// for (int k=0;k<p.size();k++)
+// {
+// if (p[k] != nullptr)
+// {
+// if (p[k]->getName() == "Advancers")
+// {
+// AdvancerNode *node = (AdvancerNode*)p[k];
+// return node->getAdvancerPosition(advancerID);
+// }
+// }
+// }
+// return 0.0;
+// }
+
+// double SpikeSorter::getElectrodeDepth(int electrodeID)
+// {
+// for (int k=0;k<electrodes.size();k++)
+// {
+// if (electrodes[k]->electrodeID == electrodeID)
+// {
+// double currentAdvancerPos = getAdvancerPosition(electrodes[k]->advancerID);
+// return electrodes[k]->depthOffsetMM + currentAdvancerPos;
+// }
+// }
+// return 0.0;
+// }
+
+
+// double SpikeSorter::getSelectedElectrodeDepth()
+// {
+// if (electrodes.size() == 0)
+// return 0.0;
+
+// double currentAdvancerPos = getAdvancerPosition(electrodes[currentElectrode]->advancerID);
+// return electrodes[currentElectrode]->depthOffsetMM + currentAdvancerPos;
+// }
+
+bool SpikeSorter::isSelectedElectrodeRecorded(int channel_index)
+{
+ if (electrodes.size() == 0)
+ return false;
+ int channel = electrodes[currentElectrode]->channels[channel_index];
+ RecordNode* recordNode = getProcessorGraph()->getRecordNode();
+
+ StringArray names;
+ Array<bool> recording;
+ recordNode->getChannelNamesAndRecordingStatus(names, recording);
+ if (channel >= 0 && channel < recording.size())
+ return recording[channel];
+
+ return false;
+ //return electrodes[currentElectrode]->depthOffsetMM + currentAdvancerPos;
+}
+
+void SpikeSorter::saveCustomParametersToXml(XmlElement* parentElement)
+{
+ XmlElement* mainNode = parentElement->createNewChildElement("SpikeSorter");
+ mainNode->setAttribute("numElectrodes", electrodes.size());
+
+ SpikeSorterEditor* ed = (SpikeSorterEditor*) getEditor();
+
+ mainNode->setAttribute("activeElectrode", ed->getSelectedElectrode()-1);
+ mainNode->setAttribute("numPreSamples", numPreSamples);
+ mainNode->setAttribute("numPostSamples", numPostSamples);
+ mainNode->setAttribute("autoDACassignment", autoDACassignment);
+ mainNode->setAttribute("syncThresholds",syncThresholds);
+ mainNode->setAttribute("uniqueID",uniqueID);
+ mainNode->setAttribute("flipSignal",flipSignal);
+
+ XmlElement* countNode = mainNode->createNewChildElement("ELECTRODE_COUNTER");
+
+ countNode->setAttribute("numElectrodeTypes", (int)electrodeTypes.size());
+ for (int k=0;k<electrodeTypes.size();k++)
+ {
+ XmlElement* countNode2 = countNode->createNewChildElement("ELECTRODE_TYPE");
+ countNode2->setAttribute("type", electrodeTypes[k]);
+ countNode2->setAttribute("count", electrodeCounter[k]);
+ }
+
+ for (int i = 0; i < electrodes.size(); i++)
+ {
+ XmlElement* electrodeNode = mainNode->createNewChildElement("ELECTRODE");
+ electrodeNode->setAttribute("name", electrodes[i]->name);
+ electrodeNode->setAttribute("numChannels", electrodes[i]->numChannels);
+ electrodeNode->setAttribute("prePeakSamples", electrodes[i]->prePeakSamples);
+ electrodeNode->setAttribute("postPeakSamples", electrodes[i]->postPeakSamples);
+ electrodeNode->setAttribute("advancerID", electrodes[i]->advancerID);
+ electrodeNode->setAttribute("depthOffsetMM", electrodes[i]->depthOffsetMM);
+ electrodeNode->setAttribute("electrodeID", electrodes[i]->electrodeID);
+
+ for (int j = 0; j < electrodes[i]->numChannels; j++)
+ {
+ XmlElement* channelNode = electrodeNode->createNewChildElement("SUBCHANNEL");
+ channelNode->setAttribute("ch",*(electrodes[i]->channels+j));
+ channelNode->setAttribute("thresh",*(electrodes[i]->thresholds+j));
+ channelNode->setAttribute("isActive",*(electrodes[i]->isActive+j));
+
+ }
+
+ // save spike sorting data.
+ electrodes[i]->spikeSort->saveCustomParametersToXml(electrodeNode);
+
+ }
+
+
+}
+
+void SpikeSorter::loadCustomParametersFromXml()
+{
+
+ if (parametersAsXml != nullptr)
+ {
+
+ int electrodeIndex = -1;
+
+ forEachXmlChildElement(*parametersAsXml, mainNode)
+ {
+
+ // use parametersAsXml to restore state
+
+ if (mainNode->hasTagName("SpikeSorter"))
+ {
+ int numElectrodes = mainNode->getIntAttribute("numElectrodes");
+ currentElectrode = mainNode->getIntAttribute("activeElectrode");
+ numPreSamples = mainNode->getIntAttribute("numPreSamples");
+ numPostSamples = mainNode->getIntAttribute("numPostSamples");
+ autoDACassignment = mainNode->getBoolAttribute("autoDACassignment");
+ syncThresholds = mainNode->getBoolAttribute("syncThresholds");
+ uniqueID = mainNode->getIntAttribute("uniqueID");
+ flipSignal = mainNode->getBoolAttribute("flipSignal");
+
+ forEachXmlChildElement(*mainNode, xmlNode)
+ {
+
+ if (xmlNode->hasTagName("ELECTRODE_COUNTER"))
+ {
+ int numElectrodeTypes = xmlNode->getIntAttribute("numElectrodeTypes");
+ electrodeCounter.resize(numElectrodeTypes);
+ electrodeTypes.resize(numElectrodeTypes);
+ int counter = 0;
+ forEachXmlChildElement(*xmlNode, xmltype)
+ {
+ if (xmltype->hasTagName("ELECTRODE_TYPE"))
+ {
+ electrodeTypes[counter] = xmltype->getStringAttribute("type");
+ electrodeCounter[counter] = xmltype->getIntAttribute("count");
+ counter++;
+ }
+ }
+ } else
+ if (xmlNode->hasTagName("ELECTRODE"))
+ {
+
+ electrodeIndex++;
+
+ int channelsPerElectrode = xmlNode->getIntAttribute("numChannels");
+
+ int advancerID = xmlNode->getIntAttribute("advancerID");
+ float depthOffsetMM = xmlNode->getDoubleAttribute("depthOffsetMM");
+ int electrodeID = xmlNode->getIntAttribute("electrodeID");
+ String electrodeName=xmlNode->getStringAttribute("name");
+
+
+ int channelIndex = -1;
+
+ int *channels = new int[channelsPerElectrode];
+ float *thres = new float[channelsPerElectrode];
+ bool *isActive = new bool[channelsPerElectrode];
+
+ forEachXmlChildElement(*xmlNode, channelNode)
+ {
+ if (channelNode->hasTagName("SUBCHANNEL"))
+ {
+ channelIndex++;
+ channels[channelIndex] = channelNode->getIntAttribute("ch");
+ thres[channelIndex] = channelNode->getDoubleAttribute("thresh");
+ isActive[channelIndex] = channelNode->getBoolAttribute("isActive");
+ }
+ }
+ Electrode* newElectrode = new Electrode(electrodeID, &uniqueIDgenerator,&computingThread, electrodeName, channelsPerElectrode, channels,getDefaultThreshold(),
+ numPreSamples,numPostSamples, getSampleRate());
+ for (int k=0;k<channelsPerElectrode;k++)
+ {
+ newElectrode->thresholds[k] = thres[k];
+ newElectrode->isActive[k] = isActive[k];
+ }
+
+ newElectrode->advancerID = advancerID;
+ newElectrode->depthOffsetMM = depthOffsetMM;
+ // now read sorted units information
+ newElectrode->spikeSort->loadCustomParametersFromXml(xmlNode);
+ addElectrode(newElectrode);
+
+ }
+ }
+ }
+ }
+ }
+ SpikeSorterEditor* ed = (SpikeSorterEditor*) getEditor();
+ // ed->updateAdvancerList();
+
+ if (currentElectrode >= 0) {
+ ed->refreshElectrodeList(currentElectrode);
+ ed->setSelectedElectrode(1+currentElectrode);
+ } else
+ {
+ ed->refreshElectrodeList();
+ }
+
+
+}
+
+
+
+void SpikeSorter::removeSpikePlots()
+{
+ mut.enter();
+ for (int i = 0; i < getNumElectrodes(); i++)
+ {
+ Electrode *ee = electrodes[i];
+ ee->spikePlot = nullptr;
+ }
+ mut.exit();
+}
+
+int SpikeSorter::getNumElectrodes()
+{
+ mut.enter();
+ int i= electrodes.size();
+ mut.exit();
+ return i;
+
+}
+
+int SpikeSorter::getNumberOfChannelsForElectrode(int i)
+{
+ mut.enter();
+ if (i > -1 && i < electrodes.size())
+ {
+ Electrode *ee = electrodes[i];
+ int ii=ee->numChannels;
+ mut.exit();
+ return ii;
+ } else {
+ mut.exit();
+ return 0;
+ }
+}
+
+
+
+String SpikeSorter::getNameForElectrode(int i)
+{
+ mut.enter();
+ if (i > -1 && i < electrodes.size())
+ {
+ Electrode *ee = electrodes[i];
+ String s= ee->name;
+ mut.exit();
+ return s;
+ } else {
+ mut.exit();
+ return " ";
+ }
+}
+
+
+void SpikeSorter::addSpikePlotForElectrode(SpikeHistogramPlot* sp, int i)
+{
+ mut.enter();
+ Electrode *ee = electrodes[i];
+ ee->spikePlot = sp;
+ mut.exit();
+}
+
+int SpikeSorter::getCurrentElectrodeIndex()
+{
+ return currentElectrode;
+}
+
+Electrode* SpikeSorter::getElectrode(int i)
+{
+ return electrodes[i];
+}
+
+
+std::vector<int> SpikeSorter::getElectrodeChannels(int ID)
+{
+ std::vector<int> ch;
+ mut.enter();
+ for (int k=0;k<electrodes.size();k++)
+ {
+ if (electrodes[k]->electrodeID == ID)
+ {
+
+ ch.resize(electrodes[k]->numChannels);
+ for (int j=0;j<electrodes[k]->numChannels;j++)
+ {
+ ch[j] = electrodes[k]->channels[j];
+ }
+
+ return ch;
+ mut.exit();
+ }
+
+
+ }
+ mut.exit();
+ return ch;
+}
+
+Electrode* SpikeSorter::setCurrentElectrodeIndex(int i)
+{
+ jassert(i >= 0 & i < electrodes.size());
+ currentElectrode = i;
+ return electrodes[i];
+}
+/*
+
+
+Histogram::Histogram(float _minValue, float _maxValue, float _resolution, bool _throwOutsideSamples) :
+ minValue(_minValue), maxValue(_maxValue), resolution(_resolution), throwOutsideSamples(_throwOutsideSamples)
+{
+ numBins = 1+ abs(maxValue-minValue) / resolution;
+ binCounts = new unsigned long[numBins];
+ binCenters = new float[numBins];
+ float deno = (numBins-1)/abs(maxValue-minValue);
+ for (int k=0;k<numBins;k++)
+ {
+ binCounts[k] = 0;
+ binCenters[k] = minValue + k/deno;
+ }
+}
+//
+//Histogram::Histogram(float _minValue, float _maxValue, int _numBins, bool _throwOutsideSamples) :
+// minValue(_minValue), maxValue(_maxValue), numBins(_numBins), throwOutsideSamples(_throwOutsideSamples)
+//{
+// resolution = abs(maxValue-minValue) / numBins ;
+// binCounts = new int[numBins];
+// binCenters = new float[numBins];
+// for (int k=0;k<numBins;k++)
+// {
+// binCounts[k] = 0;
+// binCenters[k] = minValue + k/(numBins-1)*resolution;
+// }
+//
+//}
+
+void Histogram::clear()
+{
+for (int k=0;k<numBins;k++)
+ {
+ binCounts[k] = 0;
+ }
+}
+
+
+void Histogram::addSamples(float *Samples, int numSamples) {
+ for (int k=0;k<numSamples;k++)
+ {
+ int indx = ceil( (Samples[k] - minValue) / (maxValue-minValue) * (numBins-1));
+ if (indx >= 0 && indx < numBins)
+ binCounts[indx]++;
+ }
+}
+
+Histogram::~Histogram()
+{
+ delete [] binCounts;
+ delete [] binCenters;
+}
+
+ */
+
+
+
+
+
+
+
+
+
+
+
+
+
+/***********************************/
+//
+//circularBuffer::circularBuffer(int NumCh, int NumSamplesToHoldPerChannel, double SamplingRate)
+//{
+// numCh = NumCh;
+// samplingRate = SamplingRate;
+// Buf.resize(numCh);
+// for (int ch=0;ch<numCh;ch++) {
+// Buf[ch].resize(NumSamplesToHoldPerChannel);
+// }
+// BufTS_H.resize(NumSamplesToHoldPerChannel);
+// BufTS_S.resize(NumSamplesToHoldPerChannel);
+// bufLen = NumSamplesToHoldPerChannel;
+// numSamplesInBuf = 0;
+// ptr = 0; // points to a valid position in the buffer.
+//}
+//
+//circularBuffer::~circularBuffer()
+//{
+//
+//}
+//
+//
+//std::vector<double> circularBuffer::getDataArray(int channel, int N)
+//{
+// std::vector<double> LongArray;
+// LongArray.resize(N);
+// mut.enter();
+//
+// int p = ptr - 1;
+// for (int k = 0; k < N; k++)
+// {
+// if (p < 0)
+// p = bufLen - 1;
+// LongArray[k] = Buf[channel][p];
+// p--;
+// }
+// mut.exit();
+// return LongArray;
+//}
+//
+//void circularBuffer::addDataToBuffer(std::vector<std::vector<double>> Data, double SoftwareTS, double HardwareTS)
+//{
+// mut.enter();
+// int iNumPoints = Data[0].size();
+// for (int k = 0; k < iNumPoints; k++)
+// {
+// BufTS_H[ptr] = HardwareTS + k;
+// BufTS_S[ptr] = SoftwareTS + k / samplingRate;
+// for (int ch = 0; ch < numCh; ch++)
+// {
+// Buf[ch, ptr] = Data[ch, k];
+// }
+// ptr++;
+//
+// if (ptr == bufLen)
+// {
+// ptr = 0;
+// }
+// numSamplesInBuf++;
+// if (numSamplesInBuf >= bufLen)
+// {
+// numSamplesInBuf = bufLen;
+// }
+// }
+// mut.exit();
+//}
+//
+//
+//double circularBuffer::findThresholdForChannel(int channel)
+//{
+// // Run median on analog input
+// double numSamplesPerSecond = 30000;
+// std::vector<double> LongArray = getDataArray(channel, numSamplesPerSecond*5);
+//
+// for (int k = 0; k < LongArray.size(); k++)
+// LongArray[k] = fabs(LongArray[k]);
+//
+// std::sort (LongArray.begin(), LongArray.begin()+LongArray.size()); //(12 32 45 71)26 80 53 33
+//
+//
+// int Middle = LongArray.size() / 2;
+// double Median = LongArray[Middle];
+// double NewThres = -4.0F * Median / 0.675F;
+//
+// return NewThres;
+//}
+
+
+// ===================================================
+
+void ContinuousCircularBuffer::reallocate(int NumCh)
+{
+ numCh =NumCh;
+ Buf.resize(numCh);
+ for (int k=0;k< numCh;k++)
+ {
+ Buf[k].resize(bufLen);
+ }
+ numSamplesInBuf = 0;
+ ptr = 0; // points to a valid position in the buffer.
+
+}
+
+
+ContinuousCircularBuffer::ContinuousCircularBuffer(int NumCh, float SamplingRate, int SubSampling, float NumSecInBuffer)
+{
+ Time t;
+
+ numTicksPerSecond = (double) t.getHighResolutionTicksPerSecond();
+
+ int numSamplesToHoldPerChannel = (int)(SamplingRate * NumSecInBuffer / SubSampling);
+ buffer_dx = 1.0 / (SamplingRate / SubSampling);
+ subSampling = SubSampling;
+ samplingRate = SamplingRate;
+ numCh =NumCh;
+ leftover_k = 0;
+ Buf.resize(numCh);
+
+
+ for (int k=0;k< numCh;k++)
+ {
+ Buf[k].resize(numSamplesToHoldPerChannel);
+ }
+
+ hardwareTS.resize(numSamplesToHoldPerChannel);
+ softwareTS.resize(numSamplesToHoldPerChannel);
+ valid.resize(numSamplesToHoldPerChannel);
+ bufLen = numSamplesToHoldPerChannel;
+ numSamplesInBuf = 0;
+ ptr = 0; // points to a valid position in the buffer.
+}
+
+
+void ContinuousCircularBuffer::update(int channel, int64 hardware_ts, int64 software_ts, bool rise)
+{
+ // used to record ttl pulses as continuous data...
+ mut.enter();
+ valid[ptr] = true;
+ hardwareTS[ptr] = hardware_ts;
+ softwareTS[ptr] = software_ts;
+
+ Buf[channel][ptr] = (rise) ? 1.0 : 0.0;
+
+ ptr++;
+ if (ptr == bufLen)
+ {
+ ptr = 0;
+ }
+ numSamplesInBuf++;
+ if (numSamplesInBuf >= bufLen)
+ {
+ numSamplesInBuf = bufLen;
+ }
+ mut.exit();
+}
+
+void ContinuousCircularBuffer::update(AudioSampleBuffer& buffer, int64 hardware_ts, int64 software_ts, int numpts)
+{
+ mut.enter();
+
+ // we don't start from zero because of subsampling issues.
+ // previous packet may not have ended exactly at the last given sample.
+ int k = leftover_k;
+ int lastUsedSample;
+ for (; k < numpts; k+=subSampling)
+ {
+ lastUsedSample = k;
+ valid[ptr] = true;
+ hardwareTS[ptr] = hardware_ts + k;
+ softwareTS[ptr] = software_ts + int64(float(k) / samplingRate * numTicksPerSecond);
+
+ for (int ch = 0; ch < numCh; ch++)
+ {
+ Buf[ch][ptr] = *(buffer.getReadPointer(ch,k));
+ }
+ ptr++;
+ if (ptr == bufLen)
+ {
+ ptr = 0;
+ }
+ numSamplesInBuf++;
+ if (numSamplesInBuf >= bufLen)
+ {
+ numSamplesInBuf = bufLen;
+ }
+ }
+
+ int numMissedSamples = (numpts-1)-lastUsedSample;
+ leftover_k = (subSampling-numMissedSamples-1) % subSampling;
+ mut.exit();
+
+}
+
+
+void ContinuousCircularBuffer::update(std::vector<std::vector<bool>> contdata, int64 hardware_ts, int64 software_ts, int numpts)
+{
+ mut.enter();
+
+ // we don't start from zero because of subsampling issues.
+ // previous packet may not have ended exactly at the last given sample.
+ int k = leftover_k;
+ int lastUsedSample;
+ for (; k < numpts; k+=subSampling)
+ {
+ lastUsedSample = k;
+ valid[ptr] = true;
+ hardwareTS[ptr] = hardware_ts + k;
+ softwareTS[ptr] = software_ts + int64(float(k) / samplingRate * numTicksPerSecond);
+
+ for (int ch = 0; ch < numCh; ch++)
+ {
+ Buf[ch][ptr] = contdata[ch][k];
+ }
+ ptr++;
+ if (ptr == bufLen)
+ {
+ ptr = 0;
+ }
+ numSamplesInBuf++;
+ if (numSamplesInBuf >= bufLen)
+ {
+ numSamplesInBuf = bufLen;
+ }
+ }
+
+ int numMissedSamples = (numpts-1)-lastUsedSample;
+ leftover_k =subSampling-numMissedSamples-1;
+ mut.exit();
+
+}
+/*
+void ContinuousCircularBuffer::AddDataToBuffer(std::vector<std::vector<double>> lfp, double soft_ts)
+{
+ mut.enter();
+ int numpts = lfp[0].size();
+ for (int k = 0; k < numpts / subSampling; k++)
+ {
+ valid[ptr] = true;
+ for (int ch = 0; ch < numCh; ch++)
+ {
+ Buf[ch][ptr] = lfp[ch][k];
+ TS[ptr] = soft_ts + (double)(k * subSampling) / samplingRate;
+ }
+ ptr++;
+ if (ptr == bufLen)
+ {
+ ptr = 0;
+ }
+ numSamplesInBuf++;
+ if (numSamplesInBuf >= bufLen)
+ {
+ numSamplesInBuf = bufLen;
+ }
+ }
+ mut.exit();
+}
+*/
+
+int ContinuousCircularBuffer::GetPtr()
+{
+ return ptr;
+}
+
+/************************************************************/
+
+
+
diff --git a/Source/Processors/SpikeSorter/SpikeSorter.h b/Source/Processors/SpikeSorter/SpikeSorter.h
new file mode 100644
index 0000000000000000000000000000000000000000..7c07a439deff6477ed0c52e3226eab621ded23bf
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorter.h
@@ -0,0 +1,408 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#ifndef __SPIKESORTER_H_3F920F95__
+#define __SPIKESORTER_H_3F920F95__
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+
+#include "../GenericProcessor/GenericProcessor.h"
+#include "SpikeSorterEditor.h"
+#include "SpikeSortBoxes.h"
+#include "../Visualization/SpikeObject.h"
+#include "../SourceNode/SourceNode.h"
+#include "../DataThreads/RHD2000Thread.h"
+#include <algorithm> // std::sort
+#include <queue>
+#include <stdlib.h>
+#include <stdio.h>
+#include <math.h>
+
+class SpikeSorterEditor;
+class SpikeHistogramPlot;
+class Trial;
+/**
+
+ Detects spikes in a continuous signal and outputs events containing the spike data.
+
+ Allows the user to draw boundaries around clusters.
+
+ @see GenericProcessor, SpikeSorterEditor
+
+*/
+
+/*
+class Histogram {
+public:
+ Histogram(float _minValue, float _maxValue, float _resolution, bool _throwOutsideSamples);
+ //Histogram(float _minValue, float _maxValue, int _numBins, bool _throwOutsideSamples);
+ void addSamples(float *Samples, int numSamples);
+ ~Histogram();
+ void clear();
+
+ float minValue, maxValue, resolution;
+ int numBins;
+ bool throwOutsideSamples;
+ unsigned long *binCounts;
+ float *binCenters;
+};
+*/
+
+class PCAjob;
+class PCAcomputingThread;
+class UniqueIDgenerator
+{
+public:
+ UniqueIDgenerator() {globalUniqueID=0;}
+ int generateUniqueID() {return ++globalUniqueID;};
+ void setUniqueID(int ID) {globalUniqueID= ID;}
+ int getLastUniqueID() {return globalUniqueID;}
+private:
+ int globalUniqueID;
+};
+
+class Electrode
+{
+ public:
+ Electrode(int electrodeID, UniqueIDgenerator *uniqueIDgenerator_, PCAcomputingThread *pth,String _name, int _numChannels, int *_channels, float default_threshold, int pre, int post, float samplingRate );
+ ~Electrode();
+
+ void resizeWaveform(int numPre, int numPost);
+
+ String name;
+
+ int numChannels;
+ int prePeakSamples, postPeakSamples;
+ int lastBufferIndex;
+
+ int advancerID;
+ float depthOffsetMM;
+
+ int electrodeID;
+ int* channels;
+ double* thresholds;
+ bool* isActive;
+ double *voltageScale;
+ //float PCArange[4];
+
+ SpikeHistogramPlot* spikePlot;
+ SpikeSortBoxes* spikeSort;
+ PCAcomputingThread *computingThread;
+ UniqueIDgenerator *uniqueIDgenerator;
+ bool isMonitored;
+};
+
+
+class ContinuousCircularBuffer
+{
+public:
+ ContinuousCircularBuffer(int NumCh, float SamplingRate, int SubSampling, float NumSecInBuffer);
+ void reallocate(int N);
+ void update(std::vector<std::vector<bool>> contdata, int64 hardware_ts, int64 software_ts, int numpts);
+ void update(AudioSampleBuffer& buffer, int64 hardware_ts, int64 software_ts, int numpts);
+ void update(int channel, int64 hardware_ts, int64 software_ts, bool rise);
+ int GetPtr();
+ void addTrialStartToSmartBuffer(int trialID);
+ int numCh;
+ int subSampling;
+ float samplingRate;
+ CriticalSection mut;
+ int numSamplesInBuf;
+ double numTicksPerSecond;
+ int ptr;
+ int bufLen;
+ int leftover_k;
+ double buffer_dx;
+
+ std::vector<std::vector<float> > Buf;
+ std::vector<bool> valid;
+ std::vector<int64> hardwareTS,softwareTS;
+};
+
+
+//class StringTS;
+
+
+
+class SpikeSorter : public GenericProcessor
+{
+public:
+
+ // CONSTRUCTOR AND DESTRUCTOR //
+
+ /** constructor */
+ SpikeSorter();
+
+ /** destructor */
+ ~SpikeSorter();
+
+
+ // PROCESSOR METHODS //
+
+ /** Processes an incoming continuous buffer and places new
+ spikes into the event buffer. */
+ void process(AudioSampleBuffer& buffer, MidiBuffer& events, int& nSamples);
+
+ /** Used to alter parameters of data acquisition. */
+ void setParameter(int parameterIndex, float newValue);
+
+ /** Called whenever the signal chain is altered. */
+ void updateSettings();
+
+ /** Called prior to start of acquisition. */
+ bool enable();
+
+ /** Called after acquisition is finished. */
+ bool disable();
+
+
+ bool isReady();
+ /** Creates the SpikeSorterEditor. */
+ AudioProcessorEditor* createEditor();
+
+
+
+ //void addNetworkEventToQueue(StringTS S);
+
+ void postEventsInQueue(MidiBuffer& events);
+
+ // INTERNAL BUFFERS //
+
+ /** Extra samples are placed in this buffer to allow seamless
+ transitions between callbacks. */
+ AudioSampleBuffer overflowBuffer;
+
+
+ // CREATE AND DELETE ELECTRODES //
+
+ /** Adds an electrode with n channels to be processed. */
+ bool addElectrode(int nChans, String name, double depth);
+
+ void addProbes(String probeType,int numProbes, int nElectrodesPerProbe, int nChansPerElectrode, double firstContactOffset, double interelectrodeDistance);
+
+ /** Removes an electrode with a given index. */
+ bool removeElectrode(int index);
+
+
+ // EDIT AND QUERY ELECTRODE SETTINGS //
+
+ /** Returns the number of channels for a given electrode. */
+ int getNumChannels(int index);
+
+ /** Edits the mapping between input channels and electrode channels. */
+ void setChannel(int electrodeIndex, int channelNum, int newChannel);
+
+ /** Returns the continuous channel that maps to a given
+ electrode channel. */
+ int getChannel(int index, int chan);
+
+ /** Sets the name of a given electrode. */
+ void setElectrodeName(int index, String newName);
+
+ /** */
+ void setChannelActive(int electrodeIndex, int channelNum, bool active);
+
+ /** */
+ bool isChannelActive(int electrodeIndex, int channelNum);
+
+ /** returns the current active electrode, i.e., the one displayed in the editor */
+ Electrode* getActiveElectrode();
+
+ /** Returns a StringArray containing the names of all electrodes */
+ StringArray getElectrodeNames();
+
+ /** modify a channel spike detection threshold */
+ void setChannelThreshold(int electrodeNum, int channelNum, float threshold);
+
+ /** returns a channel's detection threshold */
+ double getChannelThreshold(int electrodeNum, int channelNum);
+
+ /** used to generate messages over the network and to inform PSTH sink */
+ void addNewUnit(int electrodeID, int newUnitID, uint8 r, uint8 g, uint8 b);
+ void removeUnit(int electrodeID, int newUnitID);
+
+ /** saves all electrodes, thresholds, units, etc to xml */
+ void saveCustomParametersToXml(XmlElement* parentElement);
+ void loadCustomParametersFromXml();
+
+ /** returns the depth of an electrode. The depth is calculated as the
+ known depth of the advancer that is used to control that electrode, plus
+ the defined depth offset. Depth offset is mainly useful for depth probes,
+ in which the contact position is not always the at the tip */
+ //double getElectrodeDepth(int electrodeID);
+
+ /** returns the number of electrodes */
+ int getNumElectrodes();
+
+ /** clears up the spike plots. Called during updates */
+ void removeSpikePlots();
+
+ int getNumberOfChannelsForElectrode(int i);
+ String getNameForElectrode(int i);
+ void addSpikePlotForElectrode(SpikeHistogramPlot* sp, int i);
+ int getCurrentElectrodeIndex();
+ Electrode* setCurrentElectrodeIndex(int i);
+ Electrode* getElectrode(int i);
+ //StringTS createStringTS(String S);
+ //int64 getExtrapolatedHardwareTimestamp(int64 softwareTS);
+ //void postTimestamppedStringToMidiBuffer(StringTS s, MidiBuffer& events);
+ //void setElectrodeAdvancer(int i,int ID);
+ //void setElectrodeAdvancerOffset(int i, double v);
+ //double getAdvancerPosition(int advancerID);
+ //double getSelectedElectrodeDepth();
+ bool getAutoDacAssignmentStatus();
+ void seteAutoDacAssignment(bool status);
+ int getNumPreSamples();
+ int getNumPostSamples();
+ void setNumPreSamples(int numSamples);
+ void setNumPostSamples(int numSamples);
+ int getDACassignment(int channel);
+ void assignDACtoChannel(int dacOutput, int channel);
+ Array<int> getDACassignments();
+ void updateDACthreshold(int dacChannel, float threshold);
+ bool getThresholdSyncStatus();
+ void setThresholdSyncStatus(bool status);
+ bool getFlipSignalState();
+ void setFlipSignalState(bool state);
+ void startRecording();
+ std::vector<float> getElectrodeVoltageScales(int electrodeID);
+ //void getElectrodePCArange(int electrodeID, float &minX,float &maxX,float &minY,float &maxY);
+ //void setElectrodePCArange(int electrodeID, float minX,float maxX,float minY,float maxY);
+
+ void removeAllUnits(int electrodeID);
+
+ void setElectrodeVoltageScale(int electrodeID, int index, float newvalue);
+ bool isSelectedElectrodeRecorded(int channel);
+ std::vector<int> getElectrodeChannels(int ID);
+
+ Array<Electrode*> getElectrodes();
+
+ std::vector<String> electrodeTypes;
+
+private:
+ UniqueIDgenerator uniqueIDgenerator;
+ long uniqueSpikeID;
+ SpikeObject prevSpike;
+
+ void addElectrode(Electrode* newElectrode);
+ void increaseUniqueProbeID(String type);
+ int getUniqueProbeID(String type);
+
+ float ticksPerSec;
+ int uniqueID;
+ //std::queue<StringTS> eventQueue;
+ /** pointer to a continuous buffer. */
+ AudioSampleBuffer* dataBuffer;
+
+ float getDefaultThreshold();
+
+ int overflowBufferSize;
+
+ int sampleIndex;
+
+ std::vector<int> electrodeCounter;
+ float getNextSample(int& chan);
+ float getCurrentSample(int& chan);
+ bool samplesAvailable(int& nSamples);
+
+ bool useOverflowBuffer;
+
+ int currentElectrode;
+ int currentChannelIndex;
+ int currentIndex;
+
+
+ int numPreSamples,numPostSamples;
+ uint8_t* spikeBuffer;///[256];
+ //int64 timestamp;
+ int64 hardware_timestamp;
+ int64 software_timestamp;
+
+ bool PCAbeforeBoxes;
+ ContinuousCircularBuffer* channelBuffers; // used to compute auto threshold
+
+ void handleEvent(int eventType, MidiMessage& event, int sampleNum);
+
+ void addSpikeEvent(SpikeObject* s, MidiBuffer& eventBuffer, int peakIndex);
+
+ void resetElectrode(Electrode*);
+ CriticalSection mut;
+ bool autoDACassignment;
+ bool syncThresholds;
+ RHD2000Thread* getRhythmAccess();
+ bool flipSignal;
+
+
+ void addWaveformToSpikeObject(SpikeObject* s,
+ int& peakIndex,
+ int& electrodeNumber,
+ int& currentChannel);
+
+
+ Array<Electrode*> electrodes;
+ PCAcomputingThread computingThread;
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(SpikeSorter);
+
+};
+
+
+
+
+/*
+
+class circularBuffer {
+public:
+ circularBuffer(int NumCh, int NumSamplesToHoldPerChannel, double SamplingRate);
+ ~circularBuffer();
+
+ std::vector<double> getDataArray(int channel, int N);
+ double findThresholdForChannel(int channel);
+ void update(AudioSampleBuffer& buffer);
+
+private:
+ CriticalSection mut;
+
+ int numCh;
+ int numSamplesInBuf;
+ int ptr;
+ double samplingRate;
+ int bufLen;
+ std::vector<std::vector<double>> Buf;
+ std::vector<double> BufTS_H;
+ std::vector<double> BufTS_S;
+};
+
+
+*/
+
+
+
+
+
+
+
+
+
+
+
+#endif // __SPIKESORTER_H_3F920F95__
diff --git a/Source/Processors/SpikeSorter/SpikeSorterCanvas.cpp b/Source/Processors/SpikeSorter/SpikeSorterCanvas.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..abfc13528109520887efa69b8d9299b0269feda4
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorterCanvas.cpp
@@ -0,0 +1,2212 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "SpikeSorterCanvas.h"
+#include "../SpikeDisplayNode/SpikeDisplayCanvas.h"
+
+SpikeSorterCanvas::SpikeSorterCanvas(SpikeSorter* n) :
+ processor(n), newSpike(false)
+{
+ electrode = nullptr;
+ viewport = new Viewport();
+ spikeDisplay = new SpikeThresholdDisplay(n,this, viewport);
+
+ viewport->setViewedComponent(spikeDisplay, false);
+ viewport->setScrollBarsShown(true, true);
+
+ inDrawingPolygonMode = false;
+ scrollBarThickness = viewport->getScrollBarThickness();
+
+ addUnitButton = new UtilityButton("New box unit", Font("Small Text", 13, Font::plain));
+ addUnitButton->setRadius(3.0f);
+ addUnitButton->addListener(this);
+ addAndMakeVisible(addUnitButton);
+
+ addPolygonUnitButton = new UtilityButton("New polygon", Font("Small Text", 13, Font::plain));
+ addPolygonUnitButton->setRadius(3.0f);
+ addPolygonUnitButton->addListener(this);
+ addAndMakeVisible(addPolygonUnitButton);
+
+ addBoxButton = new UtilityButton("Add box", Font("Small Text", 13, Font::plain));
+ addBoxButton->setRadius(3.0f);
+ addBoxButton->addListener(this);
+ addAndMakeVisible(addBoxButton);
+
+ delUnitButton = new UtilityButton("Delete", Font("Small Text", 13, Font::plain));
+ delUnitButton->setRadius(3.0f);
+ delUnitButton->addListener(this);
+ addAndMakeVisible(delUnitButton);
+
+ rePCAButton = new UtilityButton("Re-PCA", Font("Small Text", 13, Font::plain));
+ rePCAButton->setRadius(3.0f);
+ rePCAButton->addListener(this);
+ addAndMakeVisible(rePCAButton);
+
+ newIDbuttons = new UtilityButton("New IDs", Font("Small Text", 13, Font::plain));
+ newIDbuttons->setRadius(3.0f);
+ newIDbuttons->addListener(this);
+ addAndMakeVisible(newIDbuttons);
+
+ deleteAllUnits = new UtilityButton("Delete All", Font("Small Text", 13, Font::plain));
+ deleteAllUnits->setRadius(3.0f);
+ deleteAllUnits->addListener(this);
+ addAndMakeVisible(deleteAllUnits);
+
+ nextElectrode = new UtilityButton("Next Electrode", Font("Small Text", 13, Font::plain));
+ nextElectrode->setRadius(3.0f);
+ nextElectrode->addListener(this);
+ addAndMakeVisible(nextElectrode);
+
+ prevElectrode = new UtilityButton("Prev Electrode", Font("Small Text", 13, Font::plain));
+ prevElectrode->setRadius(3.0f);
+ prevElectrode->addListener(this);
+ addAndMakeVisible(prevElectrode);
+
+ addAndMakeVisible(viewport);
+
+ setWantsKeyboardFocus(true);
+
+ update();
+
+}
+
+SpikeSorterCanvas::~SpikeSorterCanvas()
+{
+
+}
+
+void SpikeSorterCanvas::beginAnimation()
+{
+ std::cout << "SpikeSorterCanvas beginning animation." << std::endl;
+
+ startCallbacks();
+}
+
+void SpikeSorterCanvas::endAnimation()
+{
+ std::cout << "SpikeSorterCanvas ending animation." << std::endl;
+
+ stopCallbacks();
+}
+
+void SpikeSorterCanvas::update()
+{
+
+ std::cout << "Updating SpikeSorterCanvas" << std::endl;
+
+ int nPlots = processor->getNumElectrodes();
+ processor->removeSpikePlots();
+ spikeDisplay->removePlots();
+
+ if (nPlots > 0)
+ {
+ // Plot only active electrode
+ int currentElectrode = processor->getCurrentElectrodeIndex();
+ electrode = processor->getActiveElectrode();
+ SpikeHistogramPlot* sp = spikeDisplay->addSpikePlot(processor->getNumberOfChannelsForElectrode(currentElectrode), electrode->electrodeID,
+ processor->getNameForElectrode(currentElectrode));
+ processor->addSpikePlotForElectrode(sp, currentElectrode);
+ electrode->spikePlot->setFlipSignal(processor->getFlipSignalState());
+ electrode->spikePlot->updateUnitsFromProcessor();
+
+ }
+ spikeDisplay->resized();
+ spikeDisplay->repaint();
+}
+
+
+void SpikeSorterCanvas::refreshState()
+{
+ // called when the component's tab becomes visible again
+ resized();
+}
+
+void SpikeSorterCanvas::resized()
+{
+ viewport->setBounds(130,0,getWidth()-140,getHeight());
+
+ spikeDisplay->setBounds(0,0,getWidth()-140, spikeDisplay->getTotalHeight());
+
+ nextElectrode->setBounds(0, 20, 120,30);
+ prevElectrode->setBounds(0, 60, 120,30);
+
+ addUnitButton->setBounds(0, 120, 120,20);
+ addPolygonUnitButton->setBounds(0, 150, 120,20);
+ addBoxButton->setBounds(0, 180, 120,20);
+ delUnitButton->setBounds(0, 210, 120,20);
+
+ rePCAButton->setBounds(0, 240, 120,20);
+
+ newIDbuttons->setBounds(0, 270, 120,20);
+ deleteAllUnits->setBounds(0, 300, 120,20);
+
+}
+
+void SpikeSorterCanvas::paint(Graphics& g)
+{
+
+ g.fillAll(Colours::darkgrey);
+
+}
+
+void SpikeSorterCanvas::refresh()
+{
+ // called every 10 Hz
+ processSpikeEvents();
+
+ repaint();
+}
+
+
+void SpikeSorterCanvas::processSpikeEvents()
+{
+
+
+ Electrode* e = ((SpikeSorter*) processor)->getActiveElectrode();
+
+ // e->spikeSort->lstLastSpikes
+ // processor->setParameter(2, 0.0f); // request redraw
+
+}
+
+
+
+
+
+void SpikeSorterCanvas::removeUnitOrBox()
+{
+ int electrodeID = processor->getActiveElectrode()->electrodeID;
+ int unitID, boxID;
+ processor->getActiveElectrode()->spikePlot->getSelectedUnitAndBox(unitID, boxID);
+ bool selectNewBoxUnit = false;
+ bool selectNewPCAUnit = false;
+ if (unitID > 0)
+ {
+ if (boxID >= 0)
+ {
+ // box unit
+ int numBoxes = processor->getActiveElectrode()->spikeSort->getNumBoxes(unitID);
+ if (numBoxes > 1)
+ {
+ // delete box, but keep unit
+ processor->getActiveElectrode()->spikeSort->removeBoxFromUnit(unitID, boxID);
+ electrode->spikePlot->updateUnitsFromProcessor();
+ electrode->spikePlot->setSelectedUnitAndBox(unitID,0);
+ }
+ else
+ {
+ // delete unit
+ processor->getActiveElectrode()->spikeSort->removeUnit(unitID);
+ electrode->spikePlot->updateUnitsFromProcessor();
+ processor->removeUnit(electrodeID, unitID);
+
+ std::vector<BoxUnit> boxunits = processor->getActiveElectrode()->spikeSort->getBoxUnits();
+ std::vector<PCAUnit> pcaunits = processor->getActiveElectrode()->spikeSort->getPCAUnits();
+ if (boxunits.size() > 0)
+ {
+ selectNewBoxUnit = true;
+ }
+ else if (pcaunits.size() > 0)
+ {
+ selectNewPCAUnit = true;
+ }
+ else
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(-1,-1);
+ }
+ }
+ }
+ else
+ {
+ // pca unit
+ processor->getActiveElectrode()->spikeSort->removeUnit(unitID);
+ electrode->spikePlot->updateUnitsFromProcessor();
+ processor->removeUnit(electrodeID, unitID);
+
+ std::vector<BoxUnit> boxunits = processor->getActiveElectrode()->spikeSort->getBoxUnits();
+ std::vector<PCAUnit> pcaunits = processor->getActiveElectrode()->spikeSort->getPCAUnits();
+ if (pcaunits.size() > 0)
+ {
+ selectNewPCAUnit = true;
+ }
+ else if (boxunits.size() > 0)
+ {
+ selectNewBoxUnit = true;
+ }
+ else
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(-1,-1);
+ }
+
+
+ }
+ if (selectNewPCAUnit)
+ {
+ // set new selected unit to be the last existing unit
+ std::vector<PCAUnit> u = processor->getActiveElectrode()->spikeSort->getPCAUnits();
+ if (u.size() > 0)
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(u[u.size()-1].getUnitID(),-1);
+ }
+ else
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(-1,-1);
+ }
+ }
+ if (selectNewBoxUnit)
+ {
+ // set new selected unit to be the last existing unit
+ std::vector<BoxUnit> u = processor->getActiveElectrode()->spikeSort->getBoxUnits();
+ if (u.size() > 0)
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(u[u.size()-1].getUnitID(),0);
+ }
+ else
+ {
+ electrode->spikePlot->setSelectedUnitAndBox(-1,-1);
+ }
+ }
+
+
+
+ }
+
+}
+
+bool SpikeSorterCanvas::keyPressed(const KeyPress& key)
+{
+
+ KeyPress c = KeyPress::createFromDescription("c");
+ KeyPress e = KeyPress::createFromDescription("escape");
+ KeyPress d = KeyPress::createFromDescription("delete");
+
+ if (key.isKeyCode(c.getKeyCode())) // C
+ {
+ spikeDisplay->clear();
+
+ std::cout << "Clearing display" << std::endl;
+ return true;
+ }
+ else if (key.isKeyCode(e.getKeyCode())) // ESC
+ {
+ spikeDisplay->setPolygonMode(false);
+ return true;
+ }
+ else if (key.isKeyCode(d.getKeyCode())) // Delete
+ {
+ removeUnitOrBox();
+ return true;
+ }
+
+ return false;
+
+}
+
+void SpikeSorterCanvas::buttonClicked(Button* button)
+{
+ int channel = 0;
+ int unitID = -1;
+ int boxID = -1;
+ Time t;
+
+ if (button == addPolygonUnitButton)
+ {
+ inDrawingPolygonMode = true;
+ addPolygonUnitButton->setToggleState(true, dontSendNotification);
+ electrode->spikePlot->setPolygonDrawingMode(true);
+ }
+ else if (button == addUnitButton)
+ {
+ Electrode* e = processor->getActiveElectrode();
+
+ if (e != nullptr)
+ {
+ int electrodeID = processor->getActiveElectrode()->electrodeID;
+
+ std::cout << "Adding box unit to electrode " << e->electrodeID << std::endl;
+ int newUnitID = processor->getActiveElectrode()->spikeSort->addBoxUnit(0);
+
+ uint8 r, g, b;
+ processor->getActiveElectrode()->spikeSort->getUnitColor(newUnitID, r, g, b);
+ electrode->spikePlot->updateUnitsFromProcessor();
+ electrode->spikePlot->setSelectedUnitAndBox(newUnitID, 0);
+ processor->addNewUnit(electrodeID, newUnitID, r, g, b);
+ }
+
+ }
+ else if (button == delUnitButton)
+ {
+ removeUnitOrBox();
+
+ }
+ else if (button == addBoxButton)
+ {
+
+ processor->getActiveElectrode()->spikePlot->getSelectedUnitAndBox(unitID, boxID);
+
+ if (unitID > 0)
+ {
+ std::cout << "Adding box to channel " << channel << " with unitID " << unitID << std::endl;
+ processor->getActiveElectrode()->spikeSort->addBoxToUnit(channel, unitID);
+ electrode->spikePlot->updateUnitsFromProcessor();
+ }
+ }
+ else if (button == rePCAButton)
+ {
+ processor->getActiveElectrode()->spikeSort->RePCA();
+ }
+ else if (button == nextElectrode)
+ {
+ SpikeSorterEditor* ed = (SpikeSorterEditor*)processor->getEditor();
+ ed->setElectrodeComboBox(1);
+ }
+ else if (button == prevElectrode)
+ {
+
+ SpikeSorterEditor* ed = (SpikeSorterEditor*)processor->getEditor();
+
+ ed->setElectrodeComboBox(-1);
+
+ }
+ else if (button == newIDbuttons)
+ {
+ // generate new IDs
+ processor->getActiveElectrode()->spikeSort->generateNewIDs();
+ electrode->spikePlot->updateUnitsFromProcessor();
+ //processor->updateSinks(electrode->electrodeID,false);
+ }
+ else if (button == deleteAllUnits)
+ {
+ // delete unit
+ processor->getActiveElectrode()->spikeSort->removeAllUnits();
+ electrode->spikePlot->updateUnitsFromProcessor();
+ processor->removeAllUnits(electrode->electrodeID);
+ }
+
+ repaint();
+}
+
+
+
+
+
+// ----------------------------------------------------------------
+
+SpikeThresholdDisplay::SpikeThresholdDisplay(SpikeSorter* p, SpikeSorterCanvas* sdc, Viewport* v) :
+ processor(p),canvas(sdc), viewport(v)
+{
+
+ totalHeight = 1000;
+
+}
+
+SpikeThresholdDisplay::~SpikeThresholdDisplay()
+{
+
+}
+
+void SpikeThresholdDisplay::clear()
+{
+ if (spikePlots.size() > 0)
+ {
+ for (int i = 0; i < spikePlots.size(); i++)
+ {
+ spikePlots[i]->clear();
+ }
+ }
+
+}
+
+
+void SpikeThresholdDisplay::removePlots()
+{
+ spikePlots.clear();
+
+}
+
+SpikeHistogramPlot* SpikeThresholdDisplay::addSpikePlot(int numChannels, int electrodeID, String name_)
+{
+
+ std::cout << "Adding new spike plot." << std::endl;
+
+ SpikeHistogramPlot* spikePlot = new SpikeHistogramPlot(processor,canvas, electrodeID, 1000 + numChannels, name_);
+ spikePlots.add(spikePlot);
+ addAndMakeVisible(spikePlot);
+
+ return spikePlot;
+}
+
+void SpikeThresholdDisplay::paint(Graphics& g)
+{
+
+ g.fillAll(Colours::grey);
+
+}
+
+void SpikeThresholdDisplay::setPolygonMode(bool on)
+{
+ if (spikePlots.size() > 0)
+ spikePlots[0]->setPolygonDrawingMode(on);
+}
+
+void SpikeThresholdDisplay::resized()
+{
+ // this is kind of a mess -- is there any way to optimize it?
+
+ if (spikePlots.size() > 0)
+ {
+
+ int w = getWidth();
+ int h = 430;//getHeight();
+
+ spikePlots[0]->setBounds(0, 0, w, h);
+
+
+ setBounds(0, 0, w, h);
+ }
+
+}
+
+void SpikeThresholdDisplay::mouseDown(const MouseEvent& event)
+{
+
+}
+
+void SpikeThresholdDisplay::plotSpike(const SpikeObject& spike, int electrodeNum)
+{
+ spikePlots[electrodeNum]->processSpikeObject(spike);
+
+}
+
+
+
+
+
+
+// ----------------------------------------------------------------
+
+SpikeHistogramPlot::SpikeHistogramPlot(SpikeSorter* prc,SpikeSorterCanvas* sdc, int electrodeID_, int p, String name_) :
+ canvas(sdc), isSelected(false), plotType(p), electrodeID(electrodeID_),
+ limitsChanged(true), processor(prc), name(name_)
+
+{
+
+ font = Font("Default", 15, Font::plain);
+
+ switch (p)
+ {
+ case SINGLE_PLOT:
+ // std::cout<<"SpikePlot as SINGLE_PLOT"<<std::endl;
+ nWaveAx = 1;
+ nProjAx = 1;
+ nChannels = 1;
+ minWidth = 600;
+ aspectRatio = 0.5f;
+ break;
+ case STEREO_PLOT:
+ // std::cout<<"SpikePlot as STEREO_PLOT"<<std::endl;
+ nWaveAx = 2;
+ nProjAx = 1;
+ nChannels = 2;
+ minWidth = 300;
+ aspectRatio = 0.5f;
+ break;
+ case TETRODE_PLOT:
+ // std::cout<<"SpikePlot as TETRODE_PLOT"<<std::endl;
+ nWaveAx = 4;
+ nProjAx = 1;
+ nChannels = 4;
+ minWidth = 400;
+ aspectRatio = 0.5f;
+ break;
+ // case HIST_PLOT:
+ // nWaveAx = 1;
+ // nProjAx = 0;
+ // nHistAx = 1;
+ // break;
+ default: // unsupported number of axes provided
+ std::cout << "SpikePlot as UNKNOWN, defaulting to SINGLE_PLOT" << std::endl;
+ nWaveAx = 1;
+ nProjAx = 0;
+ plotType = SINGLE_PLOT;
+ nChannels = 1;
+ }
+
+ std::vector<float> scales = processor->getElectrodeVoltageScales(electrodeID);
+ initAxes(scales);
+
+ for (int i = 0; i < nChannels; i++)
+ {
+ UtilityButton* rangeButton = new UtilityButton(String(scales[i],0), Font("Small Text", 10, Font::plain));
+ rangeButton->setRadius(3.0f);
+ rangeButton->addListener(this);
+ addAndMakeVisible(rangeButton);
+
+ rangeButtons.add(rangeButton);
+ }
+
+}
+
+
+void SpikeHistogramPlot::setSelectedUnitAndBox(int unitID, int boxID)
+{
+ const ScopedLock myScopedLock(mut);
+ processor->getActiveElectrode()->spikeSort->setSelectedUnitAndBox(unitID, boxID);
+}
+
+void SpikeHistogramPlot::getSelectedUnitAndBox(int& unitID, int& boxID)
+{
+ const ScopedLock myScopedLock(mut);
+ processor->getActiveElectrode()->spikeSort->getSelectedUnitAndBox(unitID, boxID);
+}
+
+
+SpikeHistogramPlot::~SpikeHistogramPlot()
+{
+ pAxes.clear();
+ wAxes.clear();
+
+}
+
+void SpikeHistogramPlot::paint(Graphics& g)
+{
+
+ //const MessageManagerLock mmLock;
+
+ g.setColour(Colours::white);
+ g.drawRect(0,0,getWidth(),getHeight());
+
+ g.setFont(font);
+
+ g.drawText(name,10,0,200,20,Justification::left,false);
+
+}
+
+void SpikeHistogramPlot::setFlipSignal(bool state)
+{
+ for (int i = 0; i < wAxes.size(); i++)
+ {
+ wAxes[i]->setSignalFlip(state);
+ }
+}
+
+void SpikeHistogramPlot::setPolygonDrawingMode(bool on)
+{
+ const ScopedLock myScopedLock(mut);
+ pAxes[0]->setPolygonDrawingMode(on);
+}
+
+void SpikeHistogramPlot::updateUnitsFromProcessor()
+{
+ const ScopedLock myScopedLock(mut);
+ boxUnits = processor->getActiveElectrode()->spikeSort->getBoxUnits();
+ pcaUnits = processor->getActiveElectrode()->spikeSort->getPCAUnits();
+
+ if (nWaveAx > 0)
+ {
+ wAxes[0]->updateUnits(boxUnits);
+ }
+ pAxes[0]->updateUnits(pcaUnits);
+
+
+ int selectedUnitID, selectedBoxID;
+ processor->getActiveElectrode()->spikeSort->getSelectedUnitAndBox(selectedUnitID, selectedBoxID);
+
+
+
+
+}
+
+void SpikeHistogramPlot::setPCARange(float p1min, float p2min, float p1max, float p2max)
+{
+ const ScopedLock myScopedLock(mut);
+ pAxes[0]->setPCARange(p1min, p2min, p1max, p2max);
+}
+
+void SpikeHistogramPlot::processSpikeObject(const SpikeObject& s)
+{
+ const ScopedLock myScopedLock(mut);
+ if (nWaveAx > 0)
+ {
+ for (int i = 0; i < nWaveAx; i++)
+ {
+ wAxes[i]->updateSpikeData(s);
+ }
+
+ pAxes[0]->updateSpikeData(s);
+
+
+ }
+}
+
+void SpikeHistogramPlot::select()
+{
+ isSelected = true;
+}
+
+void SpikeHistogramPlot::deselect()
+{
+ isSelected = false;
+}
+
+void SpikeHistogramPlot::initAxes(std::vector<float> scales)
+{
+ const ScopedLock myScopedLock(mut);
+ initLimits();
+
+ for (int i = 0; i < nWaveAx; i++)
+ {
+ WaveformAxes* wAx = new WaveformAxes(this,processor, electrodeID, i);
+ wAx->setDetectorThreshold(processor->getActiveElectrode()->thresholds[i]);
+ wAxes.add(wAx);
+ addAndMakeVisible(wAx);
+ ranges.add(scales[i]);
+ }
+
+ PCAProjectionAxes* pAx = new PCAProjectionAxes(processor);
+ float p1min,p2min, p1max, p2max;
+ processor->getActiveElectrode()->spikeSort->getPCArange(p1min,p2min, p1max, p2max);
+ pAx->setPCARange(p1min,p2min, p1max, p2max);
+
+ pAxes.add(pAx);
+ addAndMakeVisible(pAx);
+
+ setLimitsOnAxes(); // initialize the ranges
+}
+
+void SpikeHistogramPlot::resized()
+{
+ const ScopedLock myScopedLock(mut);
+
+ float width = (float)getWidth()-10;
+ float height = (float) getHeight()-25;
+
+ float axesWidth, axesHeight;
+
+ // to compute the axes positions we need to know how many columns of proj and wave axes should exist
+ // using these two values we can calculate the positions of all of the sub axes
+ int nProjCols, nWaveCols;
+
+ switch (plotType)
+ {
+ case SINGLE_PLOT:
+ nProjCols = 1;
+ nWaveCols = 1;
+ axesWidth = width/2;
+ axesHeight = height;
+ break;
+
+ case STEREO_PLOT:
+ nProjCols = 1;
+ nWaveCols = 2;
+ axesWidth = width/2;
+ axesHeight = height;
+ break;
+ case TETRODE_PLOT:
+ nProjCols = 1;
+ nWaveCols = 2;
+ axesWidth = width/2;
+ axesHeight = height/2;
+ break;
+ }
+
+ for (int i = 0; i < nWaveAx; i++)
+ {
+ wAxes[i]->setBounds(5 + (i % nWaveCols) * axesWidth/nWaveCols, 20 + (i/nWaveCols) * axesHeight, axesWidth/nWaveCols, axesHeight);
+ rangeButtons[i]->setBounds(8 + (i % nWaveCols) * axesWidth/nWaveCols,
+ 20 + (i/nWaveCols) * axesHeight + axesHeight - 18,
+ 35, 15);
+ }
+ pAxes[0]->setBounds(5 + axesWidth, 20 + 0, width/2, height);
+
+
+}
+
+
+
+void SpikeHistogramPlot::modifyRange(std::vector<float> values)
+{
+ const int NUM_RANGE = 7;
+ float range_array[NUM_RANGE] = {100,250,500,750,1000,1250,1500};
+ String label;
+ int newIndex = 0;
+
+ for (int index = 0; index < nChannels; index++)
+ {
+ for (int k = 0; k < NUM_RANGE; k++)
+ {
+ if (abs(values[index] - range_array[k]) < 0.1)
+ {
+ newIndex = k;
+ break;
+ }
+ }
+
+ ranges.set(index, range_array[newIndex]);
+ String label = String(range_array[newIndex],0);
+ rangeButtons[index]->setLabel(label);
+ }
+ setLimitsOnAxes();
+}
+
+
+void SpikeHistogramPlot::modifyRange(int index,bool up)
+{
+ const int NUM_RANGE = 7;
+ float range_array[NUM_RANGE] = {100,250,500,750,1000,1250,1500};
+ String label;
+ for (int k = 0; k < NUM_RANGE; k++)
+ {
+ if (abs(ranges[index] - range_array[k]) < 0.1)
+ {
+ int newIndex;
+ if (up)
+ newIndex = (k + 1) % NUM_RANGE;
+ else
+ {
+ newIndex = (k - 1);
+ if (newIndex < 0)
+ newIndex = NUM_RANGE-1;
+ }
+ ranges.set(index, range_array[newIndex]);
+ String label = String(range_array[newIndex],0);
+ rangeButtons[index]->setLabel(label);
+ setLimitsOnAxes();
+
+ processor->setElectrodeVoltageScale(electrodeID, index, range_array[newIndex]);
+ return;
+ }
+
+ }
+ // we shoudl never reach here.
+ jassert(false);
+ return ;
+
+}
+
+void SpikeHistogramPlot::buttonClicked(Button* button)
+{
+ UtilityButton* buttonThatWasClicked = (UtilityButton*) button;
+
+ int index = rangeButtons.indexOf(buttonThatWasClicked);
+ modifyRange(index,true);
+
+}
+
+void SpikeHistogramPlot::setLimitsOnAxes()
+{
+ const ScopedLock myScopedLock(mut);
+ for (int i = 0; i < nWaveAx; i++)
+ wAxes[i]->setRange(ranges[i]);
+}
+
+void SpikeHistogramPlot::initLimits()
+{
+ for (int i = 0; i < nChannels; i++)
+ {
+ limits[i][0] = 1209;//-1*pow(2,11);
+ limits[i][1] = 11059;//pow(2,14)*1.6;
+ }
+
+}
+
+void SpikeHistogramPlot::getBestDimensions(int* w, int* h)
+{
+ switch (plotType)
+ {
+ case TETRODE_PLOT:
+ *w = 4;
+ *h = 2;
+ break;
+ case STEREO_PLOT:
+ *w = 2;
+ *h = 1;
+ break;
+ case SINGLE_PLOT:
+ *w = 1;
+ *h = 1;
+ break;
+ default:
+ *w = 1;
+ *h = 1;
+ break;
+ }
+}
+
+void SpikeHistogramPlot::clear()
+{
+ const ScopedLock myScopedLock(mut);
+ std::cout << "SpikePlot::clear()" << std::endl;
+
+ for (int i = 0; i < nWaveAx; i++)
+ wAxes[i]->clear();
+ for (int i = 0; i < nProjAx; i++)
+ pAxes[i]->clear();
+
+
+}
+
+
+void SpikeHistogramPlot::setDisplayThresholdForChannel(int i, float f)
+{
+ const ScopedLock myScopedLock(mut);
+ if (i < wAxes.size())
+ wAxes[i]->setDetectorThreshold(f);
+
+ return;
+}
+
+
+float SpikeHistogramPlot::getDisplayThresholdForChannel(int i)
+{
+ const ScopedLock myScopedLock(mut);
+ float f= wAxes[i]->getDisplayThreshold();
+
+ return f;
+}
+
+/********************************/
+
+
+
+// --------------------------------------------------
+
+GenericDrawAxes::GenericDrawAxes(int t)
+ : gotFirstSpike(false), type(t)
+{
+ ylims[0] = 0;
+ ylims[1] = 1;
+
+ xlims[0] = 0;
+ xlims[1] = 1;
+
+ font = Font("Default", 12, Font::plain);
+
+}
+
+GenericDrawAxes::~GenericDrawAxes()
+{
+
+}
+
+bool GenericDrawAxes::updateSpikeData(const SpikeObject& newSpike)
+{
+ if (!gotFirstSpike)
+ {
+ gotFirstSpike = true;
+ }
+
+ s = newSpike;
+ return true;
+}
+
+void GenericDrawAxes::setYLims(double ymin, double ymax)
+{
+
+ //std::cout << "setting y limits to " << ymin << " " << ymax << std::endl;
+ ylims[0] = ymin;
+ ylims[1] = ymax;
+}
+void GenericDrawAxes::getYLims(double* min, double* max)
+{
+ *min = ylims[0];
+ *max = ylims[1];
+}
+void GenericDrawAxes::setXLims(double xmin, double xmax)
+{
+ xlims[0] = xmin;
+ xlims[1] = xmax;
+}
+void GenericDrawAxes::getXLims(double* min, double* max)
+{
+ *min = xlims[0];
+ *max = xlims[1];
+}
+
+
+void GenericDrawAxes::setType(int t)
+{
+ if (t < WAVE1 || t > PROJ3x4)
+ {
+ std::cout<<"Invalid Axes type specified";
+ return;
+ }
+ type = t;
+}
+
+int GenericDrawAxes::getType()
+{
+ return type;
+}
+
+int GenericDrawAxes::roundUp(int numToRound, int multiple)
+{
+ if (multiple == 0)
+ {
+ return numToRound;
+ }
+
+ int remainder = numToRound % multiple;
+ if (remainder == 0)
+ return numToRound;
+ return numToRound + multiple - remainder;
+}
+
+
+void GenericDrawAxes::makeLabel(int val, int gain, bool convert, char* s)
+{
+ if (convert)
+ {
+ double volt = ad16ToUv(val, gain)/1000.;
+ if (abs(val)>1e6)
+ {
+ //val = val/(1e6);
+ sprintf(s, "%.2fV", volt);
+ }
+ else if (abs(val)>1e3)
+ {
+ //val = val/(1e3);
+ sprintf(s, "%.2fmV", volt);
+ }
+ else
+ sprintf(s, "%.2fuV", volt);
+ }
+ else
+ {
+ sprintf(s,"%d", (int)val);
+ }
+}
+
+double GenericDrawAxes::ad16ToUv(int x, int gain)
+{
+ int result = (double)(x * 20e6) / (double)(gain * pow(2.0,16));
+ return result;
+}
+
+
+// --------------------------------------------------
+
+
+WaveformAxes::WaveformAxes(SpikeHistogramPlot* plt, SpikeSorter* p,int electrodeID_, int _channel) : GenericDrawAxes(channel), electrodeID(electrodeID_),
+ signalFlipped(false),
+ channel(_channel),
+ drawGrid(true),
+ displayThresholdLevel(0.0f),
+ spikesReceivedSinceLastRedraw(0),
+ spikeIndex(0),
+ bufferSize(5),
+ range(250.0f),
+ isOverThresholdSlider(false),
+ isDraggingThresholdSlider(false),
+ processor(p),
+ spikeHistogramPlot(plt)
+{
+ bDragging = false;
+
+ isOverUnit = -1;
+ isOverBox = -1;
+ // selectedUnit = -1;
+ // selectedBox = -1;
+ addMouseListener(this, true);
+
+ thresholdColour = Colours::red;
+
+
+ font = Font("Small Text",10,Font::plain);
+ int numSamples = 40;
+ for (int n = 0; n < bufferSize; n++)
+ {
+ SpikeObject so;
+ generateEmptySpike(&so, 4, numSamples);
+
+ spikeBuffer.add(so);
+ }
+}
+
+void WaveformAxes::mouseWheelMove(const MouseEvent& event, const MouseWheelDetails& wheel)
+{
+ // weirdly enough, sometimes we get twice of this event even though a single wheel move was made...
+ if (wheel.deltaY < 0)
+ spikeHistogramPlot->modifyRange(channel, true);
+ else
+ spikeHistogramPlot->modifyRange(channel, false);
+
+}
+
+void WaveformAxes::setSignalFlip(bool state)
+{
+ signalFlipped = state;
+ repaint();
+}
+
+void WaveformAxes::setRange(float r)
+{
+
+ //std::cout << "Setting range to " << r << std::endl;
+
+ range = r;
+
+ repaint();
+}
+
+void WaveformAxes::plotSpike(const SpikeObject& s, Graphics& g)
+{
+
+ float h = getHeight();
+ g.setColour(Colour(s.color[0],s.color[1],s.color[2]));
+ //g.setColour(Colours::pink);
+ //compute the spatial width for each waveform sample
+ float dx = getWidth()/float(spikeBuffer[0].nSamples);
+
+ /*
+ float align = 8 * getWidth()/float(spikeBuffer[0].nSamples);
+ g.drawLine(align,
+ 0,
+ align,
+ h);
+ */
+
+ // type corresponds to channel so we need to calculate the starting
+ // sample based upon which channel is getting plotted
+ int offset = channel*s.nSamples; //spikeBuffer[0].nSamples * type; //
+
+ int dSamples = 1;
+
+ float x = 0.0f;
+
+ for (int i = 0; i < s.nSamples-1; i++)
+ {
+ //std::cout << s.data[sampIdx] << std::endl;
+
+ if (*s.gain != 0)
+ {
+ float s1 =h- (h/2 + float(s.data[offset+i]-32768)/float(*s.gain)*1000.0f / (range) * h);
+ float s2 =h- (h/2 + float(s.data[offset+i+1]-32768)/float(*s.gain)*1000.0f / (range) * h);
+ if (signalFlipped)
+ {
+ s1=h-s1;
+ s2=h-s2;
+ }
+ g.drawLine(x,
+ s1,
+ x+dx,
+ s2);
+ }
+ x += dx;
+ }
+
+}
+
+void WaveformAxes::drawThresholdSlider(Graphics& g)
+{
+
+ // draw display threshold (editable)
+ g.setColour(thresholdColour);
+ if (signalFlipped)
+ {
+ float h = getHeight()-(getHeight()*(0.5f - displayThresholdLevel/range));
+ g.drawLine(0, h, getWidth(), h);
+ g.drawText(String(roundFloatToInt(displayThresholdLevel)),2,h,35,10,Justification::left, false);
+ }
+ else
+ {
+ float h = getHeight()*(0.5f - displayThresholdLevel/range);
+ g.drawLine(0, h, getWidth(), h);
+ g.drawText(String(roundFloatToInt(displayThresholdLevel)),2,h,35,10,Justification::left, false);
+ }
+
+}
+
+
+void WaveformAxes::drawWaveformGrid(Graphics& g)
+{
+
+ float h = getHeight();
+ float w = getWidth();
+
+ g.setColour(Colours::darkgrey);
+
+ for (float y = -range/2; y < range/2; y += 25.0f)
+ {
+ if (y == 0)
+ g.drawLine(0,h/2 + y/range*h, w, h/2+ y/range*h,2.0f);
+ else
+ g.drawLine(0,h/2 + y/range*h, w, h/2+ y/range*h);
+ }
+
+}
+
+
+bool WaveformAxes::updateSpikeData(const SpikeObject& s)
+{
+ if (!gotFirstSpike)
+ {
+ gotFirstSpike = true;
+ }
+
+ if (spikesReceivedSinceLastRedraw < bufferSize)
+ {
+
+ SpikeObject newSpike = s;
+
+ spikeIndex++;
+ spikeIndex %= bufferSize;
+
+ spikeBuffer.set(spikeIndex, newSpike);
+
+ spikesReceivedSinceLastRedraw++;
+
+ }
+
+ return true;
+
+}
+
+bool WaveformAxes::checkThreshold(const SpikeObject& s)
+{
+ int sampIdx = 40*type;
+
+ for (int i = 0; i < s.nSamples-1; i++)
+ {
+
+ if (float(s.data[sampIdx]-32768)/float(*s.gain)*1000.0f > displayThresholdLevel)
+ {
+ return true;
+ }
+
+ sampIdx++;
+ }
+
+ return false;
+
+}
+
+void WaveformAxes::clear()
+{
+
+ spikeBuffer.clear();
+ spikeIndex = 0;
+ int numSamples=40;
+ for (int n = 0; n < bufferSize; n++)
+ {
+ SpikeObject so;
+ generateEmptySpike(&so, 4,numSamples);
+
+ spikeBuffer.add(so);
+ }
+
+ repaint();
+}
+
+void WaveformAxes::mouseMove(const MouseEvent& event)
+{
+
+ // Point<int> pos = event.getPosition();
+
+ float y = event.y;
+
+ float h = getHeight()*(0.5f - displayThresholdLevel/range);
+ if (signalFlipped)
+ {
+ h = getHeight() - h;
+ }
+
+ // std::cout << y << " " << h << std::endl;
+
+ if (y > h - 10.0f && y < h + 10.0f && !isOverThresholdSlider)
+ {
+ thresholdColour = Colours::yellow;
+ // std::cout << "Yes." << std::endl;
+ isOverThresholdSlider = true;
+ // cursorType = MouseCursor::DraggingHandCursor;
+ }
+ else if ((y < h - 10.0f || y > h + 10.0f) && isOverThresholdSlider)
+ {
+ thresholdColour = Colours::red;
+ isOverThresholdSlider = false;
+ }
+ else
+ {
+ // are we inside a box ?
+ isOverUnit = 0;
+ isOverBox = -1;
+ strOverWhere = "";
+ isOverUnitBox(event.x, event.y, isOverUnit, isOverBox, strOverWhere);
+
+ }
+ repaint();
+
+}
+
+int WaveformAxes::findUnitIndexByID(int ID)
+{
+ for (int k = 0; k < units.size(); k++)
+ if (units[k].UnitID == ID)
+ return k;
+ return -1;
+}
+
+void WaveformAxes::mouseDown(const juce::MouseEvent& event)
+{
+
+ if (event.mods.isRightButtonDown())
+ {
+ clear();
+ }
+
+ float h = getHeight();
+ float w = getWidth();
+ float microsec_span = 40.0/30000.0 * 1e6;
+ float microvolt_span = range/2;
+ mouseDownX = event.x/w * microsec_span ;
+ if (signalFlipped)
+ mouseDownY=(h/2- (h-event.y))/(h/2)*microvolt_span;
+ else
+ mouseDownY=(h/2- event.y)/(h/2)*microvolt_span;
+
+ if (isOverUnit > 0)
+ {
+ processor->getActiveElectrode()->spikeSort->setSelectedUnitAndBox(isOverUnit, isOverBox);
+ int indx = findUnitIndexByID(isOverUnit);
+ jassert(indx >= 0);
+ mouseOffsetX = mouseDownX - units[indx].lstBoxes[isOverBox].x;
+ mouseOffsetY = mouseDownY - units[indx].lstBoxes[isOverBox].y;
+ }
+ else
+ {
+ processor->getActiveElectrode()->spikeSort->setSelectedUnitAndBox(-1, -1);
+
+ }
+ // MouseUnitOffset = ScreenToMS_uV(e.X, e.Y) - new PointD(boxOnDown.x, boxOnDown.y);
+
+ // if (isOverThresholdSlider)
+ // {
+ // cursorType = MouseCursor::DraggingHandCursor;
+ // }
+}
+
+
+void WaveformAxes::mouseUp(const MouseEvent& event)
+{
+ if (bDragging)
+ {
+ bDragging = false;
+ // send a message to processor to update its internal structure?
+ Electrode* e = processor->getActiveElectrode();
+ e->spikeSort->updateBoxUnits(units);
+ }
+ // if (isOverThresholdSlider)
+ // {
+ // cursorType = MouseCursor::DraggingHandCursor;
+ // }
+}
+
+void WaveformAxes::mouseDrag(const MouseEvent& event)
+{
+ bDragging = true;
+
+ if (isOverUnit > 0)
+ {
+ // dragging a box
+ // convert position to metric coordinates.
+ float h = getHeight();
+ float w = getWidth();
+ float microsec_span = 40.0/30000.0 * 1e6;
+ float microvolt_span = range/2;
+ float x = event.x/w * microsec_span ;
+
+ float y;
+ if (signalFlipped)
+ y=(h/2- (h-event.y))/(h/2)*microvolt_span;
+ else
+ y=(h/2- event.y)/(h/2)*microvolt_span;
+
+ // update units position....
+
+ for (int k=0; k<units.size(); k++)
+ {
+ if (units[k].getUnitID() == isOverUnit)
+ {
+ float oldx = units[k].lstBoxes[isOverBox].x;
+ float oldy = units[k].lstBoxes[isOverBox].y;
+
+ float dx = x - oldx;
+ float dy = y - oldy;
+
+ if (strOverWhere == "right")
+ {
+ units[k].lstBoxes[isOverBox].w = x - oldx;
+ }
+ else if (strOverWhere == "left")
+ {
+ units[k].lstBoxes[isOverBox].w += -dx;
+ units[k].lstBoxes[isOverBox].x = x;
+ }
+ else if ((!signalFlipped && strOverWhere == "top") || (signalFlipped && strOverWhere == "bottom"))
+ {
+ units[k].lstBoxes[isOverBox].y += dy;
+ units[k].lstBoxes[isOverBox].h += dy;
+ }
+ else if ((!signalFlipped && strOverWhere == "bottom") || (signalFlipped && strOverWhere == "top"))
+ {
+ units[k].lstBoxes[isOverBox].h = -dy;
+ }
+ else if ((!signalFlipped && strOverWhere == "bottomright") || (signalFlipped && strOverWhere == "topright"))
+ {
+ units[k].lstBoxes[isOverBox].w = x - oldx;
+ units[k].lstBoxes[isOverBox].h = -dy;
+
+ }
+ else if ((!signalFlipped && strOverWhere == "bottomleft") || (signalFlipped && strOverWhere == "topleft"))
+ {
+ units[k].lstBoxes[isOverBox].w += -dx;
+ units[k].lstBoxes[isOverBox].x = x;
+ units[k].lstBoxes[isOverBox].h = -dy;
+ }
+ else if ((!signalFlipped && strOverWhere == "topright") || (signalFlipped && strOverWhere == "bottomright"))
+ {
+ units[k].lstBoxes[isOverBox].y += dy;
+ units[k].lstBoxes[isOverBox].h += dy;
+ units[k].lstBoxes[isOverBox].w = x - oldx;
+
+ }
+ else if ((!signalFlipped && strOverWhere == "topleft") || (signalFlipped && strOverWhere == "bottomleft"))
+ {
+ units[k].lstBoxes[isOverBox].w += -dx;
+ units[k].lstBoxes[isOverBox].x = x;
+ units[k].lstBoxes[isOverBox].y += dy;
+ units[k].lstBoxes[isOverBox].h += dy;
+
+ }
+ else if (strOverWhere == "inside")
+ {
+ units[k].lstBoxes[isOverBox].x = x-mouseOffsetX;
+ units[k].lstBoxes[isOverBox].y = y-mouseOffsetY;
+ }
+
+ if (units[k].lstBoxes[isOverBox].h < 0)
+ {
+ units[k].lstBoxes[isOverBox].y -= units[k].lstBoxes[isOverBox].h;
+ units[k].lstBoxes[isOverBox].h *= -1;
+ if (strOverWhere == "top")
+ strOverWhere = "bottom";
+ else if (strOverWhere == "bottom")
+ strOverWhere = "top";
+ else if (strOverWhere == "topleft")
+ strOverWhere = "bottomleft";
+ else if (strOverWhere == "topright")
+ strOverWhere = "bottomright";
+ else if (strOverWhere == "bottomleft")
+ strOverWhere = "topleft";
+ else if (strOverWhere == "bottomright")
+ strOverWhere = "topright";
+ }
+ if (units[k].lstBoxes[isOverBox].w < 0)
+ {
+ units[k].lstBoxes[isOverBox].x += units[k].lstBoxes[isOverBox].w;
+ units[k].lstBoxes[isOverBox].w *= -1;
+ if (strOverWhere == "left")
+ strOverWhere = "right";
+ else if (strOverWhere == "right")
+ strOverWhere = "left";
+ else if (strOverWhere == "topleft")
+ strOverWhere = "topright";
+ else if (strOverWhere == "topright")
+ strOverWhere = "topleft";
+ else if (strOverWhere == "bottomleft")
+ strOverWhere = "bottomright";
+ else if (strOverWhere == "bottomright")
+ strOverWhere = "bottomleft";
+ }
+
+ }
+
+ }
+
+ //void WaveformAxes::isOverUnitBox(float x, float y, int &UnitID, int &BoxID, String &where)
+ }
+ else if (isOverThresholdSlider)
+ {
+
+ float thresholdSliderPosition ;
+ if (signalFlipped)
+ thresholdSliderPosition = (getHeight()-float(event.y)) / float(getHeight());
+ else
+ thresholdSliderPosition = float(event.y) / float(getHeight());
+
+ if (thresholdSliderPosition > 1)
+ thresholdSliderPosition = 1;
+ else if (thresholdSliderPosition < -1) // Modified to allow negative thresholds.
+ thresholdSliderPosition =-1;
+
+
+ displayThresholdLevel = (0.5f - thresholdSliderPosition) * range;
+ // update processor
+ processor->getActiveElectrode()->thresholds[channel] = displayThresholdLevel;
+ SpikeSorterEditor* edt = (SpikeSorterEditor*) processor->getEditor();
+ for (int k=0; k<processor->getActiveElectrode()->numChannels; k++)
+ edt->electrodeButtons[k]->setToggleState(false, dontSendNotification);
+
+ edt->electrodeButtons[channel]->setToggleState(true, dontSendNotification);
+
+ edt->setThresholdValue(channel,displayThresholdLevel);
+ }
+ repaint();
+}
+
+// MouseCursor WaveAxes::getMouseCursor()
+// {
+// MouseCursor c = MouseCursor(cursorType);
+
+// return c;
+// }
+
+void WaveformAxes::mouseExit(const MouseEvent& event)
+{
+ if (isOverThresholdSlider)
+ {
+ isOverThresholdSlider = false;
+ thresholdColour = Colours::red;
+ repaint();
+ }
+}
+
+float WaveformAxes::getDisplayThreshold()
+{
+ return displayThresholdLevel;
+}
+
+void WaveformAxes::setDetectorThreshold(float t)
+{
+ displayThresholdLevel = t;
+}
+
+
+
+void WaveformAxes::isOverUnitBox(float x, float y, int& UnitID, int& BoxID, String& where)
+{
+
+ float h = getHeight();
+ float w = getWidth();
+ // Map box coordinates to screen coordinates.
+ // Assume time span is 40 samples at 30 Khz?
+ float microsec_span = 40.0/30000.0 * 1e6;
+ float microvolt_span = range/2;
+
+ // Typical spike is 40 samples, at 30kHz ~ 1.3 ms or 1300 usecs.
+ for (int k = 0; k < units.size(); k++)
+ {
+ for (int boxiter = 0; boxiter< units[k].lstBoxes.size(); boxiter++)
+ {
+ Box B = units[k].lstBoxes[boxiter];
+ float rectx1 = B.x / microsec_span * w;
+ float recty1 = h/2 - (B.y / microvolt_span * h/2);
+ float rectx2 = (B.x+B.w) / microsec_span * w;
+ float recty2 = h/2 - ((B.y-B.h) / microvolt_span * h/2);
+
+ if (signalFlipped)
+ {
+ recty1 = h-recty1;
+ recty2 = h-recty2;
+ }
+
+ if (rectx1 > rectx2)
+ swapVariables(rectx1,rectx2);
+ if (recty1 > recty2)
+ swapVariables(recty1,recty2);
+
+ if (x >= rectx1 - 10 & y >= recty1 -10 & x <= rectx2 + 10 & y <= recty2+10)
+ {
+ //setMouseCursor(MouseCursor::DraggingHandCursor);
+ UnitID = units[k].UnitID;
+ BoxID = boxiter;
+ if (x >= rectx1 - 10 & x <= rectx1 + 10 && y >= recty1-10 & y <= recty1+10)
+ {
+ where = "topleft";
+ setMouseCursor(MouseCursor::TopLeftCornerResizeCursor);
+ }
+ else if (x >= rectx2 - 10 & x <= rectx2 + 10 && y >= recty1-10 & y <= recty1+10)
+ {
+ where = "topright";
+ setMouseCursor(MouseCursor::TopRightCornerResizeCursor);
+ }
+ else if (x >= rectx1 - 10 & x <= rectx1 + 10 && y >= recty2-10 & y <= recty2+10)
+ {
+ where = "bottomleft";
+ setMouseCursor(MouseCursor::BottomLeftCornerResizeCursor);
+ }
+ else if (x >= rectx2 - 10 & x <= rectx2 + 10 && y >= recty2-10 & y <= recty2+10)
+ {
+ where = "bottomright";
+ setMouseCursor(MouseCursor::BottomRightCornerResizeCursor);
+ }
+ else if (x >= rectx1 - 10 & x <= rectx1 + 10)
+ {
+ where = "left";
+ setMouseCursor(MouseCursor::LeftEdgeResizeCursor);
+ }
+ else if (x >= rectx2 - 10 & x <= rectx2 + 10)
+ {
+ where = "right";
+ setMouseCursor(MouseCursor::RightEdgeResizeCursor);
+ }
+ else if (y >= recty1 - 10 & y <= recty1 + 10)
+ {
+ setMouseCursor(MouseCursor::TopEdgeResizeCursor);
+ where = "top";
+ }
+ else if (y >= recty2 - 10 & y <= recty2 + 10)
+ {
+ where = "bottom";
+ setMouseCursor(MouseCursor::BottomEdgeResizeCursor);
+ }
+ else
+ {
+ setMouseCursor(MouseCursor::DraggingHandCursor);
+ where = "inside";
+ }
+ return;
+ }
+ }
+ }
+
+ setMouseCursor(MouseCursor::NormalCursor); // not inside any boxes
+}
+
+void WaveformAxes::drawBoxes(Graphics& g)
+{
+ // y and h are given in micro volts.
+ // x and w and given in micro seconds.
+
+ float h = getHeight();
+ float w = getWidth();
+ // Map box coordinates to screen coordinates.
+ // Assume time span is 40 samples at 30 Khz?
+ float microsec_span = 40.0/30000.0 * 1e6;
+ float microvolt_span = range/2;
+
+ int selectedUnitID, selectedBoxID;
+ processor->getActiveElectrode()->spikeSort->getSelectedUnitAndBox(selectedUnitID, selectedBoxID);
+
+ // Typical spike is 40 samples, at 30kHz ~ 1.3 ms or 1300 usecs.
+ for (int k = 0; k < units.size(); k++)
+ {
+ g.setColour(Colour(units[k].ColorRGB[0],units[k].ColorRGB[1],units[k].ColorRGB[2]));
+
+ for (int boxiter = 0; boxiter < units[k].lstBoxes.size(); boxiter++)
+ {
+ Box B = units[k].lstBoxes[boxiter];
+
+ float thickness = 2;
+ if (units[k].getUnitID() == selectedUnitID && boxiter == selectedBoxID)
+ thickness = 3;
+ else if (units[k].getUnitID() == isOverUnit && boxiter == isOverBox)
+ thickness = 2;
+ else
+ thickness = 1;
+
+
+ float rectx1 = B.x / microsec_span * w;
+ float recty1 = (h/2 - (B.y / microvolt_span * h/2));
+
+ float rectx2 = (B.x+B.w) / microsec_span * w;
+ float recty2 = (h/2 - ((B.y-B.h) / microvolt_span * h/2));
+
+ //std::cout << rectx1 << " " << rectx2 << " " << recty1 << " " << recty2 << std::endl;
+
+ float drawRecty1, drawRecty2;
+ if (signalFlipped)
+ {
+ drawRecty2 = h-recty1;
+ drawRecty1 = h-recty2;
+ }
+ else
+ {
+ drawRecty1 = recty1;
+ drawRecty2 = recty2;
+ }
+ g.drawRect(rectx1,drawRecty1,rectx2-rectx1, drawRecty2-drawRecty1,thickness);
+ g.drawText(String(units[k].UnitID), rectx1,drawRecty1-15,rectx2-rectx1,15,juce::Justification::centred,false);
+
+ }
+ }
+}
+
+
+
+void WaveformAxes::updateUnits(std::vector<BoxUnit> _units)
+{
+ units = _units;
+}
+
+void WaveformAxes::paint(Graphics& g)
+{
+ g.setColour(Colours::black);
+ g.fillRect(0,0,getWidth(), getHeight());
+
+ // int chan = 0;
+
+ if (drawGrid)
+ drawWaveformGrid(g);
+
+ if (channel == 0)
+ {
+ //double depth = processor->getSelectedElectrodeDepth();
+ //String d = "Depth: "+String(depth,4) +" mm";
+ //g.setFont(Font("Small Text", 13, Font::plain));
+ // g.setColour(Colours::white);
+
+ //g.drawText(d,10,10,150,20,Justification::left,false);
+ }
+ // draw the grid lines for the waveforms
+
+ // draw the threshold line and labels
+ drawThresholdSlider(g);
+ drawBoxes(g);
+ // if no spikes have been received then don't plot anything
+ if (!gotFirstSpike)
+ {
+ return;
+ }
+
+
+ for (int spikeNum = 0; spikeNum < bufferSize; spikeNum++)
+ {
+
+ if (spikeNum != spikeIndex)
+ {
+ g.setColour(Colours::grey);
+ plotSpike(spikeBuffer[spikeNum], g);
+ }
+
+ }
+
+ g.setColour(Colours::white);
+ plotSpike(spikeBuffer[spikeIndex], g);
+
+ bool isRecorded = processor->isSelectedElectrodeRecorded(channel);
+
+ if (!isRecorded)
+ {
+ String d = "NOT RECORDED";
+ g.setFont(Font("Small Text", 15, Font::plain));
+ g.setColour(Colours::red);
+ g.drawText(d,getWidth()-140,10,120,25,Justification::right,false);
+
+ }
+
+ spikesReceivedSinceLastRedraw = 0;
+
+}
+
+// --------------------------------------------------
+
+
+PCAProjectionAxes::PCAProjectionAxes(SpikeSorter* p) : GenericDrawAxes(0), processor(p), imageDim(500),
+ rangeX(250), rangeY(250), spikesReceivedSinceLastRedraw(0)
+{
+ projectionImage = Image(Image::RGB, imageDim, imageDim, true);
+ bufferSize = 600;
+ pcaMin[0] = pcaMin[1] = 0;
+ pcaMax[0] = pcaMax[1] = 0;
+
+ rangeSet = false;
+ inPolygonDrawingMode = false;
+ clear();
+ updateProcessor = false;
+ isOverUnit = -1;
+
+ rangeUpButton = new UtilityButton("+", Font("Small Text", 10, Font::plain));
+ rangeUpButton->setRadius(3.0f);
+ rangeUpButton->addListener(this);
+ addAndMakeVisible(rangeUpButton);
+
+ rangeDownButton = new UtilityButton("-", Font("Small Text", 10, Font::plain));
+ rangeDownButton->setRadius(3.0f);
+ rangeDownButton->addListener(this);
+ addAndMakeVisible(rangeDownButton);
+
+ redrawSpikes = true;
+
+}
+
+void PCAProjectionAxes::resized()
+{
+
+ rangeDownButton->setBounds(10,10, 20, 15);
+ rangeUpButton->setBounds(35,10, 20, 15);
+}
+
+void PCAProjectionAxes::setPolygonDrawingMode(bool on)
+{
+ if (on)
+ {
+ inPolygonDrawingMode = true;
+ setMouseCursor(MouseCursor::CrosshairCursor);
+
+ }
+ else
+ {
+ inPolygonDrawingMode = false;
+ setMouseCursor(MouseCursor::NormalCursor);
+ }
+}
+
+void PCAProjectionAxes::updateUnits(std::vector<PCAUnit> _units)
+{
+ units = _units;
+}
+
+void PCAProjectionAxes::drawUnit(Graphics& g, PCAUnit unit)
+{
+ float w = getWidth();
+ float h = getHeight();
+
+ int selectedUnitID, selectedBoxID;
+ processor->getActiveElectrode()->spikeSort->getSelectedUnitAndBox(selectedUnitID, selectedBoxID);
+ g.setColour(Colour(unit.ColorRGB[0],unit.ColorRGB[1],unit.ColorRGB[2]));
+ if (unit.poly.pts.size() > 2)
+ {
+ float thickness;
+ if (unit.getUnitID() == selectedUnitID)
+ thickness = 3;
+ else if (unit.getUnitID() == isOverUnit)
+ thickness = 2;
+ else
+ thickness = 1;
+
+ double cx=0,cy=0;
+ for (int k=0; k<unit.poly.pts.size()-1; k++)
+ {
+ // convert projection coordinates to screen coordinates.
+ float x1 = (unit.poly.offset.X + unit.poly.pts[k].X - pcaMin[0]) / (pcaMax[0]-pcaMin[0]) * w;
+ float y1 = (unit.poly.offset.Y + unit.poly.pts[k].Y - pcaMin[1]) / (pcaMax[1]-pcaMin[1]) * h;
+ float x2 = (unit.poly.offset.X + unit.poly.pts[k+1].X - pcaMin[0]) / (pcaMax[0]-pcaMin[0]) * w;
+ float y2 = (unit.poly.offset.Y + unit.poly.pts[k+1].Y - pcaMin[1]) / (pcaMax[1]-pcaMin[1]) * h;
+ cx+=x1;
+ cy+=y1;
+ g.drawLine(x1,y1,x2,y2,thickness);
+ }
+ float x1 = (unit.poly.offset.X + unit.poly.pts[0].X - pcaMin[0]) / (pcaMax[0]-pcaMin[0]) * w;
+ float y1 = (unit.poly.offset.Y + unit.poly.pts[0].Y - pcaMin[1]) / (pcaMax[1]-pcaMin[1]) * h;
+ float x2 = (unit.poly.offset.X + unit.poly.pts[unit.poly.pts.size()-1].X - pcaMin[0]) / (pcaMax[0]-pcaMin[0]) * w;
+ float y2 = (unit.poly.offset.Y + unit.poly.pts[unit.poly.pts.size()-1].Y - pcaMin[1]) / (pcaMax[1]-pcaMin[1]) * h;
+ g.drawLine(x1,y1,x2,y2,thickness);
+
+ cx+=x2;
+ cy+=y2;
+
+ g.drawText(String(unit.UnitID), (cx/unit.poly.pts.size())-10,(cy/unit.poly.pts.size())-10,20,15,juce::Justification::centred,false);
+ }
+}
+
+void PCAProjectionAxes::paint(Graphics& g)
+{
+
+ spikesReceivedSinceLastRedraw = 0;
+
+ g.drawImage(projectionImage,
+ 0, 0, getWidth(), getHeight(),
+ 0, 0, rangeX, rangeY);
+
+
+ // draw pca units polygons
+ for (int k=0; k<units.size(); k++)
+ {
+ drawUnit(g, units[k]);
+ }
+
+
+ if (inPolygonDrawingMode)
+ {
+ setMouseCursor(MouseCursor::CrosshairCursor);
+ // draw polygon
+ bool first = true;
+ PointD prev;
+
+ if (drawnPolygon.size() > 0)
+ {
+ g.setColour(Colour(drawnUnit.ColorRGB[0],drawnUnit.ColorRGB[1],drawnUnit.ColorRGB[2]));
+
+ for (std::list<PointD>::iterator it = drawnPolygon.begin(); it != drawnPolygon.end(); it++)
+ {
+ if (first)
+ {
+ first = false;
+ }
+ else
+ {
+ g.drawLine((*it).X, (*it).Y, prev.X,prev.Y);
+ }
+ prev = *it;
+ }
+
+ g.drawLine(drawnPolygon.front().X,drawnPolygon.front().Y,drawnPolygon.back().X,drawnPolygon.back().Y);
+ }
+ }
+
+ //Graphics im(projectionImage);
+
+ if (redrawSpikes)
+ {
+ // recompute image
+ int w = getWidth();
+ int h = getHeight();
+ projectionImage.clear(juce::Rectangle<int>(0, 0, projectionImage.getWidth(), projectionImage.getHeight()),
+ Colours::black);
+
+ bool subsample = false;
+ int dk = (subsample) ? 5 : 1;
+
+ for (int k=0; k<bufferSize; k+=dk)
+ {
+ drawProjectedSpike(spikeBuffer[k]);
+ }
+ redrawSpikes = false;
+ }
+
+}
+
+
+void PCAProjectionAxes::drawProjectedSpike(SpikeObject s)
+{
+ if (rangeSet)
+ {
+ Graphics g(projectionImage);
+
+ g.setColour(Colour(s.color[0],s.color[1],s.color[2]));
+
+ float x = (s.pcProj[0] - pcaMin[0]) / (pcaMax[0]-pcaMin[0]) * rangeX;
+ float y = (s.pcProj[1] - pcaMin[1]) / (pcaMax[1]-pcaMin[1]) * rangeY;
+ if (x >= 0 & y >= 0 & x <= rangeX & y <= rangeY)
+ g.fillEllipse(x,y,2,2);
+ }
+}
+
+void PCAProjectionAxes::redraw(bool subsample)
+{
+ Graphics g(projectionImage);
+
+ // recompute image
+ int w = getWidth();
+ int h = getHeight();
+ projectionImage.clear(juce::Rectangle<int>(0, 0, projectionImage.getWidth(), projectionImage.getHeight()),
+ Colours::black);
+
+ int dk = (subsample) ? 5 : 1;
+
+ for (int k=0; k<bufferSize; k+=dk)
+ {
+ drawProjectedSpike(spikeBuffer[k]);
+ }
+
+}
+
+void PCAProjectionAxes::setPCARange(float p1min, float p2min, float p1max, float p2max)
+{
+
+ pcaMin[0] = p1min;
+ pcaMin[1] = p2min;
+ pcaMax[0] = p1max;
+ pcaMax[1] = p2max;
+ rangeSet = true;
+ redrawSpikes = true;
+ processor->getActiveElectrode()->spikeSort->setPCArange(p1min,p2min, p1max, p2max);
+
+}
+
+bool PCAProjectionAxes::updateSpikeData(const SpikeObject& s)
+{
+
+ if (spikesReceivedSinceLastRedraw < bufferSize)
+ {
+
+ SpikeObject newSpike = s;
+
+ spikeIndex++;
+ spikeIndex %= bufferSize;
+
+ spikeBuffer.set(spikeIndex, newSpike);
+
+ spikesReceivedSinceLastRedraw++;
+ //drawProjectedSpike(newSpike);
+ redrawSpikes = true;
+
+ }
+ return true;
+}
+
+
+void PCAProjectionAxes::clear()
+{
+ projectionImage.clear(juce::Rectangle<int>(0, 0, projectionImage.getWidth(), projectionImage.getHeight()),
+ Colours::black);
+
+
+ spikeBuffer.clear();
+ spikeIndex = 0;
+
+ redrawSpikes = true;
+ //repaint();
+}
+
+
+void PCAProjectionAxes::mouseDrag(const juce::MouseEvent& event)
+{
+
+ if (!inPolygonDrawingMode)
+ {
+
+ setMouseCursor(MouseCursor::DraggingHandCursor);
+ int selectedUnitID, selectedBoxID;
+ processor->getActiveElectrode()->spikeSort->getSelectedUnitAndBox(selectedUnitID, selectedBoxID);
+
+ if (isOverUnit > 0 && selectedUnitID == isOverUnit)
+ {
+ // pan unit
+ int unitindex=-1;
+
+ for (int k=0; k<units.size(); k++)
+ {
+ if (units[k].getUnitID() == selectedUnitID)
+ {
+ unitindex = k;
+ break;
+ }
+ }
+ jassert(unitindex >= 0);
+
+ int w = getWidth();
+ int h = getHeight();
+ float range0 = pcaMax[0]-pcaMin[0];
+ float range1 = pcaMax[1]-pcaMin[1];
+
+ float dx = float(event.x-prevx) / w*range0;
+ float dy = float(event.y-prevy) / h*range1;
+
+
+ units[unitindex].poly.offset.X += dx;
+ units[unitindex].poly.offset.Y += dy;
+ updateProcessor = true;
+ // draw polygon
+ prevx = event.x;
+ prevy = event.y;
+
+ }
+ else
+ {
+ // Pan PCA space
+ int w = getWidth();
+ int h = getHeight();
+ float range0 = pcaMax[0]-pcaMin[0];
+ float range1 = pcaMax[1]-pcaMin[1];
+
+ float dx = -float(event.x-prevx) / w*range0;
+ float dy = -float(event.y-prevy) / h*range1;
+
+ pcaMin[0]+=dx;
+ pcaMin[1]+=dy;
+ pcaMax[0]+=dx;
+ pcaMax[1]+=dy;
+ processor->getActiveElectrode()->spikeSort->setPCArange(pcaMin[0],pcaMin[1], pcaMax[0], pcaMax[1]);
+
+ // draw polygon
+ prevx = event.x;
+ prevy = event.y;
+
+ redrawSpikes = true;
+ }
+
+ }
+ else
+ {
+ int pixel_quantizer = 6;
+ float distance = float(event.x-prevx)*float(event.x-prevx)+
+ float(event.y-prevy)*float(event.y-prevy);
+ if (distance > pixel_quantizer*pixel_quantizer) // add a point every n pixels.
+ {
+ drawnPolygon.push_back(PointD(event.x,event.y));
+ // draw polygon
+ prevx = event.x;
+ prevy = event.y;
+
+ repaint();
+ }
+ }
+
+}
+
+void PCAProjectionAxes::mouseUp(const juce::MouseEvent& event)
+{
+ repaint();
+ //redraw(false);
+ setMouseCursor(MouseCursor::NormalCursor);
+ if (updateProcessor)
+ {
+ processor->getActiveElectrode()->spikeSort->updatePCAUnits(units);
+ updateProcessor = false;
+
+ }
+
+ if (inPolygonDrawingMode)
+ {
+ inPolygonDrawingMode = false;
+ SpikeSorterEditor* edt = (SpikeSorterEditor*)processor->getEditor();
+ edt->spikeSorterCanvas->addPolygonUnitButton->setToggleState(false, dontSendNotification);
+
+ // convert pixel coordinates to pca space coordinates and update unit
+ cPolygon poly;
+ poly.pts.resize(drawnPolygon.size());
+ int k=0;
+
+ float w = getWidth();
+ float h = getHeight();
+ float range0 = pcaMax[0]-pcaMin[0];
+ float range1 = pcaMax[1]-pcaMin[1];
+
+ for (std::list<PointD>::iterator it = drawnPolygon.begin(); it != drawnPolygon.end(); it++,k++)
+ {
+ poly.pts[k].X = (*it).X / w * range0 + pcaMin[0];
+ poly.pts[k].Y = (*it).Y / h * range1 + pcaMin[1];
+ }
+ drawnUnit.poly = poly;
+ units.push_back(drawnUnit);
+ // add a new PCA unit
+ Electrode* e = processor->getActiveElectrode();
+ e->spikeSort->addPCAunit(drawnUnit);
+
+
+ uint8 r,g,b;
+ e->spikeSort->getUnitColor(drawnUnit.getUnitID(), r,g,b);
+
+ processor->addNewUnit(e->electrodeID, drawnUnit.getUnitID(),r,g,b);
+
+ drawnPolygon.clear();
+ }
+}
+
+
+void PCAProjectionAxes::mouseMove(const juce::MouseEvent& event)
+{
+ isOverUnit = -1;
+ float w = getWidth();
+ float h = getHeight();
+
+ for (int k=0; k<units.size(); k++)
+ {
+ // convert projection coordinates to screen coordinates.
+ float x1 = ((float)event.x/w) * (pcaMax[0]-pcaMin[0]) + pcaMin[0];
+ float y1 = ((float)event.y/h) * (pcaMax[1]-pcaMin[1]) + pcaMin[1];
+ if (units[k].isPointInsidePolygon(PointD(x1,y1)))
+ {
+ isOverUnit = units[k].getUnitID();
+ break;
+ }
+
+ }
+
+
+}
+
+
+void PCAProjectionAxes::mouseDown(const juce::MouseEvent& event)
+{
+ prevx = event.x;
+ prevy = event.y;
+ if (event.mods.isRightButtonDown())
+ {
+ clear();
+ }
+ if (inPolygonDrawingMode)
+ {
+ drawnUnit = PCAUnit(processor->getActiveElectrode()->spikeSort->generateUnitID(),processor->getActiveElectrode()->spikeSort->generateLocalID());
+ drawnPolygon.push_back(PointD(event.x,event.y));
+ }
+ else
+ {
+ if (isOverUnit > 0)
+ processor->getActiveElectrode()->spikeSort->setSelectedUnitAndBox(isOverUnit, -1);
+ else
+ processor->getActiveElectrode()->spikeSort->setSelectedUnitAndBox(-1, -1);
+ }
+}
+
+
+bool PCAProjectionAxes::keyPressed(const KeyPress& key)
+{
+ KeyPress e = KeyPress::createFromDescription("escape");
+
+ if (key.isKeyCode(e.getKeyCode()) && inPolygonDrawingMode) // C
+ {
+ inPolygonDrawingMode = false;
+ setMouseCursor(MouseCursor::NormalCursor);
+ return true;
+ }
+ return false;
+}
+
+void PCAProjectionAxes::rangeDown()
+{
+ float range0 = pcaMax[0]-pcaMin[0];
+ float range1 = pcaMax[1]-pcaMin[1];
+ pcaMin[0] = pcaMin[0] - 0.1 * range0;
+ pcaMax[0] = pcaMax[0] + 0.1 * range0;
+ pcaMin[1] = pcaMin[1] - 0.1 * range1;
+ pcaMax[1] = pcaMax[1] + 0.1 * range1;
+ setPCARange(pcaMin[0], pcaMin[1], pcaMax[0], pcaMax[1]);
+}
+
+void PCAProjectionAxes::rangeUp()
+{
+ float range0 = pcaMax[0]-pcaMin[0];
+ float range1 = pcaMax[1]-pcaMin[1];
+ pcaMin[0] = pcaMin[0] + 0.1 * range0;
+ pcaMax[0] = pcaMax[0] - 0.1 * range0;
+ pcaMin[1] = pcaMin[1] + 0.1 * range1;
+ pcaMax[1] = pcaMax[1] - 0.1 * range1;
+
+ setPCARange(pcaMin[0], pcaMin[1], pcaMax[0], pcaMax[1]);
+
+}
+
+void PCAProjectionAxes::buttonClicked(Button* button)
+{
+ if (button == rangeDownButton)
+ {
+ rangeDown();
+ }
+
+ else if (button == rangeUpButton)
+ {
+ rangeUp();
+ }
+
+}
+
+void PCAProjectionAxes::mouseWheelMove(const MouseEvent& event, const MouseWheelDetails& wheel)
+{
+ if (wheel.deltaY > 0)
+ rangeDown();
+ else
+ rangeUp();
+}
\ No newline at end of file
diff --git a/Source/Processors/SpikeSorter/SpikeSorterCanvas.h b/Source/Processors/SpikeSorter/SpikeSorterCanvas.h
new file mode 100644
index 0000000000000000000000000000000000000000..8f5e52fb2d3ffa5c31ad5bd49eea75f028aa2720
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorterCanvas.h
@@ -0,0 +1,436 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#ifndef SPIKESORTERCANVAS_H_
+#define SPIKESORTERCANVAS_H_
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+
+#include "SpikeSorter.h"
+#include "../Visualization/SpikeObject.h"
+
+#include "../Visualization/Visualizer.h"
+#include <vector>
+
+#define WAVE1 0
+#define WAVE2 1
+#define WAVE3 2
+#define WAVE4 3
+#define PROJ1x2 4
+#define PROJ1x3 5
+#define PROJ1x4 6
+#define PROJ2x3 7
+#define PROJ2x4 8
+#define PROJ3x4 9
+
+#define TETRODE_PLOT 1004
+#define STEREO_PLOT 1002
+#define SINGLE_PLOT 1001
+
+#define MAX_NUMBER_OF_SPIKE_SOURCES 128
+#define MAX_N_CHAN 4
+
+class SpikeHistogramPlot;
+class SpikeThresholdDisplay;
+class SpikeDisplayNode;
+class SpikePlot;
+class SpikeDisplay;
+class GenericAxes;
+class ProjectionAxes;
+class WaveAxes;
+class SpikePlot;
+class RecordNode;
+
+/**
+
+ Displays spike waveforms and projections for Spike Sorter
+
+ @see SpikeDisplayNode, SpikeDisplayEditor, Visualizer
+
+*/
+
+class SpikeSorterCanvas : public Visualizer, public Button::Listener
+
+{
+public:
+ SpikeSorterCanvas(SpikeSorter* n);
+ ~SpikeSorterCanvas();
+
+ void paint(Graphics& g);
+
+ void refresh();
+
+ void processSpikeEvents();
+
+ void beginAnimation();
+ void endAnimation();
+
+ void refreshState();
+
+ void setParameter(int, float) {}
+ void setParameter(int, int, int, float) {}
+
+ void update();
+
+ void resized();
+
+ bool keyPressed(const KeyPress& key);
+
+ void buttonClicked(Button* button);
+
+ void startRecording() { } // unused
+ void stopRecording() { } // unused
+
+ SpikeSorter* processor;
+
+ ScopedPointer<UtilityButton> addPolygonUnitButton,
+ addUnitButton, delUnitButton, addBoxButton, delBoxButton, rePCAButton,nextElectrode,prevElectrode,newIDbuttons,deleteAllUnits;
+
+private:
+ void removeUnitOrBox();
+ ScopedPointer<SpikeThresholdDisplay> spikeDisplay;
+ ScopedPointer<Viewport> viewport;
+
+ bool inDrawingPolygonMode;
+ bool newSpike;
+ SpikeObject spike;
+ Electrode *electrode;
+ int scrollBarThickness;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(SpikeSorterCanvas);
+
+};
+
+
+class SpikeThresholdDisplay : public Component
+{
+public:
+ SpikeThresholdDisplay(SpikeSorter*, SpikeSorterCanvas*, Viewport*);
+
+ ~SpikeThresholdDisplay();
+
+ void removePlots();
+ void clear();
+ SpikeHistogramPlot* addSpikePlot(int numChannels, int electrodeNum, String name);
+
+ void paint(Graphics& g);
+
+ void resized();
+ void setPolygonMode(bool on);
+ void mouseDown(const juce::MouseEvent& event);
+
+ void plotSpike(const SpikeObject& spike, int electrodeNum);
+
+ int getTotalHeight()
+ {
+ return totalHeight;
+ }
+
+private:
+ int numColumns;
+ int totalHeight;
+
+ SpikeSorter* processor;
+ SpikeSorterCanvas* canvas;
+ Viewport* viewport;
+
+ OwnedArray<SpikeHistogramPlot> spikePlots;
+
+
+};
+
+
+
+class UnitWaveformAxes : public Component
+{
+public:
+ UnitWaveformAxes();
+
+};
+
+class GenericDrawAxes : public Component
+{
+public:
+
+ GenericDrawAxes(int t);
+
+ virtual ~GenericDrawAxes();
+
+ virtual bool updateSpikeData(const SpikeObject& s);
+
+ void setXLims(double xmin, double xmax);
+ void getXLims(double* xmin, double* xmax);
+ void setYLims(double ymin, double ymax);
+ void getYLims(double* ymin, double* ymax);
+
+ void setType(int type);
+ int getType();
+
+ virtual void paint(Graphics& g) = 0;
+
+ int roundUp(int, int);
+ void makeLabel(int val, int gain, bool convert, char* s);
+
+protected:
+ double xlims[2];
+ double ylims[2];
+
+ SpikeObject s;
+
+ bool gotFirstSpike;
+
+ int type;
+
+ Font font;
+
+ double ad16ToUv(int x, int gain);
+
+};
+
+class WaveformAxes : public GenericDrawAxes
+{
+public:
+ WaveformAxes(SpikeHistogramPlot *plt, SpikeSorter *p, int electrodeID_, int channel);
+ ~WaveformAxes() {}
+
+
+ bool updateSpikeData(const SpikeObject& s);
+ bool checkThreshold(const SpikeObject& spike);
+
+ void setSignalFlip(bool state);
+ void paint(Graphics& g);
+ void isOverUnitBox(float x, float y, int &UnitID, int &BoxID, String &where) ;
+
+ void plotSpike(const SpikeObject& s, Graphics& g);
+ void drawBoxes(Graphics &g);
+
+ void clear();
+ int findUnitIndexByID(int ID);
+ void mouseMove(const MouseEvent& event);
+ void mouseExit(const MouseEvent& event);
+ void mouseDown(const MouseEvent& event);
+ void mouseDrag(const MouseEvent& event);
+ void mouseWheelMove(const MouseEvent &event, const MouseWheelDetails &wheel);
+ void mouseUp(const MouseEvent& event);
+
+ void setRange(float);
+ float getRange()
+ {
+ return range;
+ }
+
+ float getDisplayThreshold();
+ void setDetectorThreshold(float);
+
+ //MouseCursor getMouseCursor();
+ void updateUnits(std::vector<BoxUnit> _units);
+
+// int selectedUnit, selectedBox;
+
+private:
+ int electrodeID;
+ bool signalFlipped;
+ bool bDragging ;
+ Colour waveColour;
+ Colour thresholdColour;
+ Colour gridColour;
+ int channel;
+ bool drawGrid;
+
+ float displayThresholdLevel;
+ float detectorThresholdLevel;
+
+ void drawWaveformGrid(Graphics& g);
+
+ void drawThresholdSlider(Graphics& g);
+
+ int spikesReceivedSinceLastRedraw;
+
+ Font font;
+ float mouseDownX, mouseDownY;
+ float mouseOffsetX,mouseOffsetY;
+ Array<SpikeObject> spikeBuffer;
+
+ int spikeIndex;
+ int bufferSize;
+
+ float range;
+
+ bool isOverThresholdSlider;
+ bool isDraggingThresholdSlider;
+ int isOverUnit,isOverBox;
+ String strOverWhere;
+
+ std::vector<BoxUnit> units;
+ SpikeSorter* processor;
+ SpikeHistogramPlot* spikeHistogramPlot;
+ MouseCursor::StandardCursorType cursorType;
+
+};
+
+
+
+class PCAProjectionAxes : public GenericDrawAxes, Button::Listener
+{
+public:
+ PCAProjectionAxes(SpikeSorter *p);
+ ~PCAProjectionAxes() {}
+
+ void setPCARange(float p1min, float p2min, float p1max, float p2max);
+ bool updateSpikeData(const SpikeObject& s);
+ void resized();
+ void paint(Graphics& g);
+ void setPolygonDrawingMode(bool on);
+ void clear();
+ void mouseDown(const juce::MouseEvent& event);
+ void mouseUp(const juce::MouseEvent& event);
+ void mouseMove(const juce::MouseEvent& event);
+ void mouseDrag(const juce::MouseEvent& event);
+ bool keyPressed(const KeyPress& key);
+ void mouseWheelMove(const MouseEvent &event, const MouseWheelDetails &wheel);
+ void redraw(bool subsample);
+
+ void updateUnits(std::vector<PCAUnit> _units);
+
+ void buttonClicked(Button* button);
+
+ void drawUnit(Graphics &g, PCAUnit unit);
+ void rangeDown();
+ void rangeUp();
+
+private:
+ float prevx,prevy;
+ bool inPolygonDrawingMode;
+ void drawProjectedSpike(SpikeObject s);
+
+ bool rangeSet;
+ SpikeSorter* processor;
+ void updateProjectionImage(uint16_t, uint16_t, uint16_t, const uint8_t *col);
+ void updateRange(const SpikeObject& s);
+ ScopedPointer<UtilityButton> rangeDownButton, rangeUpButton;
+
+ Array<SpikeObject> spikeBuffer;
+ int bufferSize;
+ int spikeIndex;
+ bool updateProcessor;
+ void calcWaveformPeakIdx(const SpikeObject&, int, int, int*, int*);
+
+ Image projectionImage;
+
+ Colour pointColour;
+ Colour gridColour;
+
+ int imageDim;
+
+ int rangeX;
+ int rangeY;
+
+ int spikesReceivedSinceLastRedraw;
+
+ float pcaMin[2],pcaMax[2];
+ std::list<PointD> drawnPolygon;
+
+ std::vector<PCAUnit> units;
+ int isOverUnit;
+ PCAUnit drawnUnit;
+
+ bool redrawSpikes;
+};
+
+
+class SpikeHistogramPlot : public Component, Button::Listener
+{
+public:
+ SpikeHistogramPlot(SpikeSorter *, SpikeSorterCanvas*, int electrodeID, int plotType, String name_);
+ virtual ~SpikeHistogramPlot();
+
+ void paint(Graphics& g);
+ void resized();
+ void setFlipSignal(bool state);
+
+ void select();
+ void deselect();
+
+ void setPolygonDrawingMode(bool on);
+ void setPCARange(float p1min, float p2min, float p1max, float p2max);
+ void modifyRange(int index,bool up);
+ void updateUnitsFromProcessor();
+ void processSpikeObject(const SpikeObject& s);
+
+ SpikeSorterCanvas* canvas;
+
+ bool isSelected;
+
+ int electrodeNumber;
+
+ void getSelectedUnitAndBox(int &unitID, int &boxID);
+ void setSelectedUnitAndBox(int unitID, int boxID);
+ int nChannels;
+
+ void initAxes(std::vector<float> scales);
+ void getBestDimensions(int*, int*);
+
+ void clear();
+
+ float minWidth;
+ float aspectRatio;
+
+ void buttonClicked(Button* button);
+
+ float getDisplayThresholdForChannel(int);
+ void setDisplayThresholdForChannel(int channelNum, float thres);
+ //void setDetectorThresholdForChannel(int, float);
+
+private:
+ void modifyRange(std::vector<float> values);
+
+ int plotType;
+ int nWaveAx;
+ int nProjAx;
+ int electrodeID;
+ bool limitsChanged;
+
+ double limits[MAX_N_CHAN][2];
+
+ std::vector<BoxUnit> boxUnits;
+ std::vector<PCAUnit> pcaUnits;
+ SpikeSorter* processor;
+ OwnedArray<PCAProjectionAxes> pAxes;
+ OwnedArray<WaveformAxes> wAxes;
+ OwnedArray<UtilityButton> rangeButtons;
+ Array<float> ranges;
+
+ void initLimits();
+ void setLimitsOnAxes();
+ void updateAxesPositions();
+
+
+ String name;
+ CriticalSection mut;
+ Font font;
+
+
+
+};
+
+#endif // SPIKESORTERCANVAS_H_
diff --git a/Source/Processors/SpikeSorter/SpikeSorterEditor.cpp b/Source/Processors/SpikeSorter/SpikeSorterEditor.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..1cae5e6ad91a4a52cb28e050e128b65fcf9b25b6
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorterEditor.cpp
@@ -0,0 +1,859 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#include "SpikeSorterEditor.h"
+#include "../SpikeDisplayNode/SpikeDisplayEditor.h"
+#include "SpikeSorterCanvas.h"
+#include "SpikeSorter.h"
+#include "../Editors/ChannelSelector.h"
+#include "../../UI/EditorViewport.h"
+
+#include <stdio.h>
+
+
+
+SpikeSorterEditor::SpikeSorterEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors=true)
+ : VisualizerEditor(parentNode, 300, useDefaultParameterEditors), spikeSorterCanvas(nullptr), isPlural(true)
+
+{
+ tabText = "Spike Detector";
+
+
+ MemoryInputStream mis(BinaryData::silkscreenserialized, BinaryData::silkscreenserializedSize, false);
+ Typeface::Ptr typeface = new CustomTypeface(mis);
+ font = Font(typeface);
+
+ desiredWidth = 300;
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ advancerList = new ComboBox("Advancers");
+ advancerList->addListener(this);
+ advancerList->setBounds(10,95,130,20);
+ addAndMakeVisible(advancerList);
+
+ depthOffsetLabel = new Label("Depth Offset","Depth Offset");
+ depthOffsetLabel->setFont(Font("Default", 10, Font::plain));
+ depthOffsetLabel->setEditable(false);
+ depthOffsetLabel->setBounds(125,115,80,20);
+ depthOffsetLabel->setColour(Label::textColourId, Colours::grey);
+ addAndMakeVisible(depthOffsetLabel);
+
+ advancerLabel = new Label("Depth Offset","ADVANCER:");
+ advancerLabel->setFont(Font("Default", 10, Font::plain));
+ advancerLabel->setEditable(false);
+ advancerLabel->setBounds(10,80,80,20);
+ advancerLabel->setColour(Label::textColourId, Colours::grey);
+ addAndMakeVisible(advancerLabel);
+
+ depthOffsetEdit = new Label("Depth Offset","0.0");
+ depthOffsetEdit->setFont(Font("Default", 10, Font::plain));
+ depthOffsetEdit->setEditable(true);
+ depthOffsetEdit->setBounds(145,95,40,20);
+ depthOffsetEdit->addListener(this);
+ depthOffsetEdit->setColour(Label::textColourId, Colours::white);
+ depthOffsetEdit->setColour(Label::backgroundColourId, Colours::grey);
+
+ addAndMakeVisible(depthOffsetEdit);
+
+ electrodeList = new ComboBox("Electrode List");
+ electrodeList->setEditableText(false);
+ electrodeList->setJustificationType(Justification::centredLeft);
+ electrodeList->addListener(this);
+ electrodeList->setBounds(65,30,130,20);
+ addAndMakeVisible(electrodeList);
+
+ numElectrodes = new Label("Number of Electrodes","1");
+ numElectrodes->setEditable(true);
+ numElectrodes->addListener(this);
+ numElectrodes->setBounds(30,30,25,20);
+ addAndMakeVisible(numElectrodes);
+
+ upButton = new TriangleButton(1);
+ upButton->addListener(this);
+ upButton->setBounds(50,30,10,8);
+ addAndMakeVisible(upButton);
+
+ downButton = new TriangleButton(2);
+ downButton->addListener(this);
+ downButton->setBounds(50,40,10,8);
+ addAndMakeVisible(downButton);
+
+ plusButton = new UtilityButton("+", titleFont);
+ plusButton->addListener(this);
+ plusButton->setRadius(3.0f);
+ plusButton->setBounds(15,27,14,14);
+ addAndMakeVisible(plusButton);
+
+ audioMonitorButton = new UtilityButton("MONITOR", Font("Default", 12, Font::plain));
+ audioMonitorButton->addListener(this);
+ audioMonitorButton->setRadius(3.0f);
+ audioMonitorButton->setBounds(80,65,65,15);
+ audioMonitorButton->setClickingTogglesState(true);
+ addAndMakeVisible(audioMonitorButton);
+
+ removeElectrodeButton = new UtilityButton("-",font);
+ removeElectrodeButton->addListener(this);
+ removeElectrodeButton->setBounds(15,45,14,14);
+ addAndMakeVisible(removeElectrodeButton);
+
+
+ configButton = new UtilityButton("CONFIG",Font("Default", 12, Font::plain));
+ configButton->addListener(this);
+ configButton->setBounds(10,65,60,15);
+ addAndMakeVisible(configButton);
+
+ thresholdSlider = new ThresholdSlider(font);
+ thresholdSlider->setBounds(210,25,65,65);
+ addAndMakeVisible(thresholdSlider);
+ thresholdSlider->addListener(this);
+ thresholdSlider->setActive(false);
+ Array<double> v;
+ thresholdSlider->setValues(v);
+
+ thresholdLabel = new Label("Name","Threshold");
+ font.setHeight(10);
+ thresholdLabel->setFont(font);
+ thresholdLabel->setBounds(208, 85, 95, 15);
+ thresholdLabel->setColour(Label::textColourId, Colours::grey);
+ addAndMakeVisible(thresholdLabel);
+
+ // create a custom channel selector
+ deleteAndZero(channelSelector);
+
+ channelSelector = new ChannelSelector(true, font);
+ addChildComponent(channelSelector);
+ channelSelector->setVisible(false);
+
+ channelSelector->activateButtons();
+ channelSelector->setRadioStatus(true);
+ channelSelector->paramButtonsToggledByDefault(false);
+ // updateAdvancerList();
+
+ dacAssignmentLabel= new Label("DAC output","DAC output");
+ dacAssignmentLabel->setFont(Font("Default", 10, Font::plain));
+ dacAssignmentLabel->setEditable(false);
+ dacAssignmentLabel->setBounds(210,115,80,20);
+ dacAssignmentLabel->setColour(Label::textColourId, Colours::grey);
+ addAndMakeVisible(dacAssignmentLabel);
+
+ dacCombo = new ComboBox("DAC Assignment");
+ dacCombo->addListener(this);
+ dacCombo->setBounds(205,100,70,18);
+ dacCombo->addItem("-",1);
+ for (int k=0; k<8; k++)
+ {
+ dacCombo->addItem("DAC"+String(k+1),k+2);
+ }
+ dacCombo->setSelectedId(1);
+ addAndMakeVisible(dacCombo);
+
+}
+
+Visualizer* SpikeSorterEditor::createNewCanvas()
+{
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ spikeSorterCanvas = new SpikeSorterCanvas(processor);
+ //ActionListener* listener = (ActionListener*) SpikeSorterCanvas;
+ //getUIComponent()->registerAnimatedComponent(listener);
+ return spikeSorterCanvas;
+}
+
+
+SpikeSorterEditor::~SpikeSorterEditor()
+{
+
+ for (int i = 0; i < electrodeButtons.size(); i++)
+ {
+ removeChildComponent(electrodeButtons[i]);
+ }
+
+}
+
+void SpikeSorterEditor::sliderEvent(Slider* slider)
+{
+ int electrodeNum = -1;
+
+ for (int i = 0; i < electrodeButtons.size(); i++)
+ {
+ if (electrodeButtons[i]->getToggleState())
+ {
+ electrodeNum = i;
+ break;
+ }
+ }
+
+ if (electrodeNum > -1)
+ {
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ processor->setChannelThreshold(electrodeList->getSelectedItemIndex(),
+ electrodeNum,
+ slider->getValue());
+
+
+
+ //Array<int> dacChannels = processor->getDACassignments;
+ int dacChannel = dacCombo->getSelectedId()-2;
+ if (dacChannel >= 0)
+ {
+ // update dac threshold.
+ processor->updateDACthreshold(dacChannel, slider->getValue());
+ }
+
+ }
+ repaint();
+ if (canvas!= nullptr)
+ canvas->repaint();
+
+}
+
+
+void SpikeSorterEditor::buttonEvent(Button* button)
+{
+ VisualizerEditor::buttonEvent(button);
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ if (electrodeButtons.contains((ElectrodeButton*) button))
+ {
+
+ {
+ for (int k=0; k<electrodeButtons.size(); k++)
+ {
+ if (electrodeButtons[k] != button)
+ electrodeButtons[k]->setToggleState(false,dontSendNotification);
+ }
+ if (electrodeButtons.size() == 1)
+ electrodeButtons[0]->setToggleState(true,dontSendNotification);
+
+ ElectrodeButton* eb = (ElectrodeButton*) button;
+ int channelNum = eb->getChannelNum()-1;
+
+ std::cout << "Channel number: " << channelNum << std::endl;
+ Array<int> a;
+ a.add(channelNum);
+ channelSelector->setActiveChannels(a);
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ thresholdSlider->setActive(true);
+ thresholdSlider->setValue(processor->getChannelThreshold(electrodeList->getSelectedItemIndex(),
+ electrodeButtons.indexOf((ElectrodeButton*) button)));
+
+
+ if (processor->getAutoDacAssignmentStatus())
+ {
+ processor->assignDACtoChannel(0, channelNum);
+ processor->assignDACtoChannel(1, channelNum);
+ }
+ Array<int> dacAssignmentToChannels = processor->getDACassignments();
+ // search for channel[0]. If found, set the combo box accordingly...
+ dacCombo->setSelectedId(1, sendNotification);
+ for (int i=0; i<dacAssignmentToChannels.size(); i++)
+ {
+ if (dacAssignmentToChannels[i] == channelNum)
+ {
+ dacCombo->setSelectedId(i+2, sendNotification);
+ break;
+ }
+ }
+
+ }
+ }
+
+
+ int num = numElectrodes->getText().getIntValue();
+
+ if (button == upButton)
+ {
+ numElectrodes->setText(String(++num), sendNotification);
+
+ return;
+
+ }
+ else if (button == downButton)
+ {
+
+ if (num > 1)
+ numElectrodes->setText(String(--num), sendNotification);
+
+ return;
+
+ }
+ else if (button == configButton)
+ {
+ PopupMenu configMenu;
+ PopupMenu waveSizeMenu;
+ PopupMenu waveSizePreMenu;
+ PopupMenu waveSizePostMenu;
+
+ waveSizePreMenu.addItem(1,"8",true,processor->getNumPreSamples() == 8);
+ waveSizePreMenu.addItem(2,"16",true,processor->getNumPreSamples() == 16);
+ waveSizePostMenu.addItem(3,"32",true,processor->getNumPostSamples() == 32);
+ waveSizePostMenu.addItem(4,"64",true,processor->getNumPostSamples() == 64);
+
+ waveSizeMenu.addSubMenu("Pre samples",waveSizePreMenu);
+ waveSizeMenu.addSubMenu("Post samples",waveSizePostMenu);
+ waveSizeMenu.addItem(7,"Flip Signal",true,processor->getFlipSignalState());
+ configMenu.addSubMenu("Waveform",waveSizeMenu,true);
+ configMenu.addItem(5,"Current Channel => Audio",true,processor->getAutoDacAssignmentStatus());
+ configMenu.addItem(6,"Threshold => All channels",true,processor->getThresholdSyncStatus());
+
+ const int result = configMenu.show();
+ switch (result)
+ {
+ case 1:
+ processor->setNumPreSamples(8);
+ break;
+ case 2:
+ processor->setNumPreSamples(16);
+ break;
+ case 3:
+ processor->setNumPostSamples(32);
+ break;
+ case 4:
+ processor->setNumPostSamples(64);
+ break;
+ case 5:
+ processor->seteAutoDacAssignment(!processor->getAutoDacAssignmentStatus());
+ refreshElectrodeList();
+ break;
+ case 6:
+ processor->setThresholdSyncStatus(!processor->getThresholdSyncStatus());
+ break;
+ case 7:
+ processor->setFlipSignalState(!processor->getFlipSignalState());
+ break;
+ }
+
+ }
+ else if (button == plusButton)
+ {
+ // std::cout << "Plus button pressed!" << std::endl;
+ if (acquisitionIsActive)
+ {
+ sendActionMessage("Stop acquisition before adding electrodes.");
+ return;
+ }
+
+ //updateAdvancerList();
+ PopupMenu probeMenu;
+ probeMenu.addItem(1,"Single Electrode");
+ probeMenu.addItem(2,"Stereotrode");
+ probeMenu.addItem(3,"Tetrode");
+ PopupMenu depthprobeMenu;
+ depthprobeMenu.addItem(4,"8 ch, 125um");
+ depthprobeMenu.addItem(5,"16 ch, 125um");
+ depthprobeMenu.addItem(6,"24 ch, 125um");
+ depthprobeMenu.addItem(7,"32 ch, 50um");
+ depthprobeMenu.addItem(8,"32 ch, 25um");
+ probeMenu.addSubMenu("Depth probe", depthprobeMenu,true);
+
+ const int result = probeMenu.show();
+ int nChansPerElectrode;
+ int nElectrodes;
+ double interelectrodeDistance=0;
+ double firstElectrodeOffset ;
+ int numProbes = numElectrodes->getText().getIntValue();
+ String ProbeType;
+
+ switch (result)
+ {
+ case 0:
+ return;
+ case 1:
+ ProbeType = "Single Electrode";
+ nChansPerElectrode = 1;
+ nElectrodes = 1;
+ firstElectrodeOffset=0;
+ break;
+ case 2:
+ ProbeType = "Stereotrode";
+ nChansPerElectrode = 2;
+ nElectrodes = 1;
+ firstElectrodeOffset = 0;
+ break;
+ case 3:
+ ProbeType = "Tetrode";
+ nChansPerElectrode = 4;
+ nElectrodes = 1;
+ firstElectrodeOffset = 0;
+ break;
+ case 4:
+ ProbeType = "Depth Probe";
+ nChansPerElectrode = 1;
+ nElectrodes = 8;
+ interelectrodeDistance = 0.125;
+ firstElectrodeOffset= -0.5;
+ break;
+ case 5:
+ ProbeType = "Depth Probe";
+ nChansPerElectrode = 1;
+ nElectrodes = 16;
+ interelectrodeDistance = 0.125;
+ firstElectrodeOffset= -0.5;
+ break;
+ case 6:
+ ProbeType = "Depth Probe";
+ nChansPerElectrode = 1;
+ nElectrodes = 24;
+ interelectrodeDistance = 0.125;
+ firstElectrodeOffset= -0.5;
+ break;
+ case 7:
+ ProbeType = "Depth Probe";
+ nChansPerElectrode = 1;
+ nElectrodes = 32;
+ interelectrodeDistance = 0.050;
+ firstElectrodeOffset= -0.5;
+ break;
+ case 8:
+ ProbeType = "Depth Probe";
+ nChansPerElectrode = 1;
+ nElectrodes = 32;
+ interelectrodeDistance = 0.025;
+ firstElectrodeOffset= -0.075;
+ break;
+ }
+
+ processor->addProbes(ProbeType,numProbes, nElectrodes,nChansPerElectrode, firstElectrodeOffset,interelectrodeDistance);
+ refreshElectrodeList();
+
+ getEditorViewport()->makeEditorVisible(this, true, true);
+
+ return;
+
+ }
+ else if (button == removeElectrodeButton) // DELETE
+ {
+ if (acquisitionIsActive)
+ {
+ sendActionMessage("Stop acquisition before deleting electrodes.");
+ return;
+ }
+ removeElectrode(electrodeList->getSelectedItemIndex());
+
+ //getEditorViewport()->makeEditorVisible(this, true, true);
+
+ return;
+ }
+ else if (button == audioMonitorButton)
+ {
+
+ channelSelector->clearAudio();
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ Array<Electrode*> electrodes = processor->getElectrodes();
+
+ for (int i = 0; i < electrodes.size(); i++)
+ {
+ Electrode* e = electrodes[i];
+ e->isMonitored = false;
+ }
+
+ Electrode* e = processor->getActiveElectrode();
+ e->isMonitored = audioMonitorButton->getToggleState();
+
+ for (int i = 0; i < e->numChannels; i++)
+ {
+ int channelNum = e->channels[i];
+ channelSelector->setAudioStatus(channelNum, audioMonitorButton->getToggleState());
+
+ }
+
+ }
+
+
+
+}
+
+void SpikeSorterEditor::setThresholdValue(int channel, double threshold)
+{
+ thresholdSlider->setActive(true);
+ thresholdSlider->setValue(threshold);
+ repaint();
+}
+
+void SpikeSorterEditor::channelChanged(int chan)
+{
+ //std::cout << "New channel: " << chan << std::endl;
+ if (chan <=0)
+ return;
+
+ for (int i = 0; i < electrodeButtons.size(); i++)
+ {
+ if (electrodeButtons[i]->getToggleState())
+ {
+ electrodeButtons[i]->setChannelNum(chan);
+ electrodeButtons[i]->repaint();
+ Array<int> a;
+ a.add(chan-1);
+ channelSelector->setActiveChannels(a);
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ processor->setChannel(electrodeList->getSelectedItemIndex(),
+ i,
+ chan-1);
+
+ // if DAC is selected, update the mapping.
+ int dacchannel = dacCombo->getSelectedId()-2;
+ if (dacchannel >=0)
+ {
+ processor->assignDACtoChannel(dacchannel, chan-1);
+ }
+ if (processor->getAutoDacAssignmentStatus())
+ {
+ processor->assignDACtoChannel(0,chan-1);
+ processor->assignDACtoChannel(1,chan-1);
+ break;
+ }
+
+ }
+ }
+
+}
+
+int SpikeSorterEditor::getSelectedElectrode()
+{
+ return electrodeList->getSelectedId();
+}
+
+void SpikeSorterEditor::setSelectedElectrode(int i)
+{
+ electrodeList->setSelectedId(i);
+}
+
+void SpikeSorterEditor::refreshElectrodeList(int selected)
+{
+ electrodeList->clear();
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ StringArray electrodeNames = processor->getElectrodeNames();
+
+ for (int i = 0; i < electrodeNames.size(); i++)
+ {
+ electrodeList->addItem(electrodeNames[i], electrodeList->getNumItems()+1);
+ }
+
+ if (electrodeList->getNumItems() > 0)
+ {
+ if (selected == 0)
+ selected = electrodeList->getNumItems();
+
+ electrodeList->setSelectedId(selected);
+ // electrodeList->setText(electrodeList->getItemText(electrodeList->getNumItems()-1));
+ lastId = electrodeList->getNumItems();
+ electrodeList->setEditableText(true);
+
+ drawElectrodeButtons(selected-1);
+ Electrode* e = processor->getElectrode(selected - 1);
+
+ int advancerIndex = 0;
+ for (int k=0; k<advancerIDs.size(); k++)
+ {
+ if (advancerIDs[k] == e->advancerID)
+ {
+ advancerIndex = 1+k;
+ break;
+ }
+ }
+
+ advancerList->setSelectedId(advancerIndex);
+ depthOffsetEdit->setText(String(e->depthOffsetMM,4),dontSendNotification);
+
+ if (processor->getAutoDacAssignmentStatus())
+ {
+ processor->assignDACtoChannel(0, e->channels[0]);
+ processor->assignDACtoChannel(1, e->channels[0]);
+ }
+ Array<int> dacAssignmentToChannels = processor->getDACassignments();
+ // search for channel[0]. If found, set the combo box accordingly...
+ dacCombo->setSelectedId(1, sendNotification);
+ for (int i=0; i<dacAssignmentToChannels.size(); i++)
+ {
+ if (dacAssignmentToChannels[i] == e->channels[0])
+ {
+ dacCombo->setSelectedId(i+2, sendNotification);
+ processor->updateDACthreshold(i+2, e->thresholds[0]);
+ break;
+ }
+ }
+
+
+
+
+ }
+ if (spikeSorterCanvas != nullptr)
+ spikeSorterCanvas->update();
+}
+
+
+void SpikeSorterEditor::removeElectrode(int index)
+{
+ std::cout << "Deleting electrode number " << index << std::endl;
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ processor->removeElectrode(index);
+ refreshElectrodeList();
+
+ int newIndex = jmin(index, electrodeList->getNumItems()-1);
+ newIndex = jmax(newIndex, 0);
+
+ electrodeList->setSelectedId(newIndex, sendNotification);
+ electrodeList->setText(electrodeList->getItemText(newIndex));
+
+ if (electrodeList->getNumItems() == 0)
+ {
+ electrodeButtons.clear();
+ electrodeList->setEditableText(false);
+ }
+}
+
+void SpikeSorterEditor::labelTextChanged(Label* label)
+{
+ if (label == depthOffsetEdit)
+ {
+ // update electrode depth offset.
+ Value v = depthOffsetEdit->getTextValue();
+ double offset = v.getValue();
+
+ int electrodeIndex = electrodeList->getSelectedId()-1;
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ //if (electrodeIndex >= 0)
+ // processor->setElectrodeAdvancerOffset(electrodeIndex, offset);
+
+ if (spikeSorterCanvas != nullptr)
+ spikeSorterCanvas->update();
+
+ }
+}
+
+void SpikeSorterEditor::setElectrodeComboBox(int direction)
+{
+ int N = electrodeList->getNumItems();
+ int C = electrodeList->getSelectedId();
+ C+=direction;
+ if (C <= 0)
+ C = N;
+ if (C > N)
+ C = 1;
+ electrodeList->setSelectedId(C, dontSendNotification);
+}
+
+void SpikeSorterEditor::comboBoxChanged(ComboBox* comboBox)
+{
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ if (comboBox == dacCombo)
+ {
+ int selection = dacCombo->getSelectedId();
+ // modify the dac channel assignment...
+ if (selection > 1)
+ {
+ int selectedSubChannel = -1;
+ for (int i = 0; i < electrodeButtons.size(); i++)
+ {
+ if (electrodeButtons[i]->getToggleState())
+ {
+ selectedSubChannel = i;
+ break;
+ }
+ }
+ Electrode* e = processor->getActiveElectrode();
+ if (e != nullptr)
+ {
+ int dacchannel = selection-2;
+ processor->assignDACtoChannel(dacchannel, e->channels[selectedSubChannel]);
+ }
+ }
+
+ }
+ else if (comboBox == electrodeList)
+ {
+ int ID = comboBox->getSelectedId();
+
+ if (ID == 0)
+ {
+ // modify electrode name
+ processor->setElectrodeName(lastId, comboBox->getText());
+ refreshElectrodeList();
+
+ }
+ else
+ {
+ // switch to a new electrode.
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ lastId = ID;
+ Electrode* e= processor->setCurrentElectrodeIndex(ID-1);
+ drawElectrodeButtons(ID-1);
+ int advancerIndex = 0;
+
+ audioMonitorButton->setToggleState(e->isMonitored, dontSendNotification);
+
+ for (int k=0; k<advancerIDs.size(); k++)
+ {
+ if (advancerIDs[k] == e->advancerID)
+ {
+ advancerIndex = 1+k;
+ break;
+ }
+ }
+ advancerList->setSelectedId(advancerIndex, dontSendNotification);
+ depthOffsetEdit->setText(String(e->depthOffsetMM,4),dontSendNotification);
+
+ if (processor->getAutoDacAssignmentStatus())
+ {
+ processor->assignDACtoChannel(0, e->channels[0]);
+ processor->assignDACtoChannel(1, e->channels[0]);
+ }
+ Array<int> dacAssignmentToChannels = processor->getDACassignments();
+ // search for channel[0]. If found, set the combo box accordingly...
+ dacCombo->setSelectedId(1, sendNotification);
+ for (int i=0; i<dacAssignmentToChannels.size(); i++)
+ {
+ if (dacAssignmentToChannels[i] == e->channels[0])
+ {
+ dacCombo->setSelectedId(i+2, sendNotification);
+ break;
+ }
+ }
+
+ }
+
+
+
+ }
+ else if (comboBox == advancerList)
+ {
+ // attach advancer to electrode.
+ // int electrodeIndex = electrodeList->getSelectedId()-1;
+ // SpikeSorter* processor = (SpikeSorter*) getProcessor();
+ // int selectedAdvancer = advancerList->getSelectedId() ;
+ // if (electrodeIndex >= 0 && selectedAdvancer > 0)
+ // processor->setElectrodeAdvancer(electrodeIndex,advancerIDs[advancerList->getSelectedId()-1]);
+ // else
+ // advancerList->setSelectedId(0,dontSendNotification);
+ }
+
+}
+
+void SpikeSorterEditor::checkSettings()
+{
+ electrodeList->setSelectedItemIndex(0);
+}
+
+void SpikeSorterEditor::drawElectrodeButtons(int ID)
+{
+
+ SpikeSorter* processor = (SpikeSorter*) getProcessor();
+
+ electrodeButtons.clear();
+
+ int width = 20;
+ int height = 15;
+
+ int numChannels = processor->getNumChannels(ID);
+ int row = 0;
+ int column = 0;
+
+ Array<int> activeChannels;
+ Array<double> thresholds;
+
+ for (int i = 0; i < numChannels; i++)
+ {
+ ElectrodeButton* button = new ElectrodeButton(processor->getChannel(ID,i)+1);
+ electrodeButtons.add(button);
+
+ if (i == 0)
+ {
+ activeChannels.add(processor->getChannel(ID,i));
+ thresholds.add(processor->getChannelThreshold(ID,i));
+ }
+
+ button->setToggleState(i == 0, dontSendNotification);
+ button->setBounds(155+(column++)*width, 60+row*height, width, 15);
+ addAndMakeVisible(button);
+ button->addListener(this);
+
+ if (column % 2 == 0)
+ {
+ column = 0;
+ row++;
+ }
+
+ }
+
+ channelSelector->setActiveChannels(activeChannels);
+
+ thresholdSlider->setValues(thresholds);
+ thresholdSlider->setActive(true);
+ thresholdSlider->setEnabled(true);
+ thresholdSlider->setValue(processor->getChannelThreshold(ID,0),dontSendNotification);
+ repaint();
+ if (spikeSorterCanvas != nullptr)
+ spikeSorterCanvas->update();
+}
+
+
+// void SpikeSorterEditor::updateAdvancerList()
+// {
+
+// ProcessorGraph *g = getProcessor()->getProcessorGraph();
+// Array<GenericProcessor*> p = g->getListOfProcessors();
+// for (int k=0;k<p.size();k++)
+// {
+// if (p[k]->getName() == "Advancers")
+// {
+// AdvancerNode *node = (AdvancerNode *)p[k];
+// if (node != nullptr)
+// {
+// advancerNames = node->getAdvancerNames();
+// advancerIDs = node->getAdvancerIDs();
+
+// advancerList->clear(dontSendNotification);
+// for (int i=0;i<advancerNames.size();i++)
+// {
+// advancerList->addItem(advancerNames[i],1+i);
+// }
+// }
+// }
+// }
+
+
+// int selectedElectrode = electrodeList->getSelectedId();
+// if (selectedElectrode > 0) {
+// SpikeSorter* processor = (SpikeSorter*) getProcessor();
+// Electrode *e = processor->getElectrode( selectedElectrode-1);
+// int advancerIndex = 0;
+// for (int k=0;k<advancerIDs.size();k++)
+// {
+// if (advancerIDs[k] == e->advancerID)
+// {
+// advancerIndex = 1+k;
+// break;
+// }
+// }
+// advancerList->setSelectedId(advancerIndex);
+// }
+// repaint();
+// }
diff --git a/Source/Processors/SpikeSorter/SpikeSorterEditor.h b/Source/Processors/SpikeSorter/SpikeSorterEditor.h
new file mode 100644
index 0000000000000000000000000000000000000000..2e237ef4440e6fa141db6761d0e44bbfb7988814
--- /dev/null
+++ b/Source/Processors/SpikeSorter/SpikeSorterEditor.h
@@ -0,0 +1,114 @@
+/*
+ ------------------------------------------------------------------
+
+ This file is part of the Open Ephys GUI
+ Copyright (C) 2013 Open Ephys
+
+ ------------------------------------------------------------------
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+*/
+
+#ifndef __SPIKESORTEREDITOR_H_F0BD2DD9__
+#define __SPIKESORTEREDITOR_H_F0BD2DD9__
+
+
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../Editors/GenericEditor.h"
+#include "../../UI/UIComponent.h"
+#include "../../UI/DataViewport.h"
+#include "../Visualization/DataWindow.h"
+#include "../Editors/VisualizerEditor.h"
+#include "../Editors/ElectrodeButtons.h"
+#include "../SpikeDetector/SpikeDetectorEditor.h"
+
+class SpikeSorterCanvas;
+
+/**
+
+ User interface for the SpikeSorter processor.
+
+ Allows the user to add single electrodes, stereotrodes, or tetrodes.
+
+ Parameters of individual channels, such as channel mapping, threshold,
+ and enabled state, can be edited.
+
+ @see SpikeSorter
+
+*/
+
+class SpikeSorterEditor : public VisualizerEditor,
+ public Label::Listener,
+ public ComboBox::Listener
+
+{
+public:
+ SpikeSorterEditor(GenericProcessor* parentNode, bool useDefaultParameterEditors);
+ virtual ~SpikeSorterEditor();
+ void buttonEvent(Button* button);
+ void labelTextChanged(Label* label);
+ void comboBoxChanged(ComboBox* comboBox);
+ void sliderEvent(Slider* slider);
+
+ void channelChanged(int chan);
+
+ Visualizer* createNewCanvas();
+ void checkSettings();
+ void setThresholdValue(int chan, double threshold);
+ OwnedArray<ElectrodeButton> electrodeButtons;
+ SpikeSorterCanvas* spikeSorterCanvas;
+ //void updateAdvancerList();
+ void refreshElectrodeList(int selected = 0);
+ void setSelectedElectrode(int i);
+ int getSelectedElectrode();
+ void setElectrodeComboBox(int direction);
+
+private:
+ void drawElectrodeButtons(int);
+
+
+
+ // ComboBox* electrodeTypes;
+ ScopedPointer<ComboBox> electrodeList,dacCombo;
+ ScopedPointer<ComboBox> advancerList;
+ ScopedPointer<Label> advancerLabel, depthOffsetLabel, depthOffsetEdit;
+ ScopedPointer<Label> numElectrodes;
+ ScopedPointer<Label> thresholdLabel,dacAssignmentLabel;
+ ScopedPointer<TriangleButton> upButton;
+ ScopedPointer<TriangleButton> downButton;
+ ScopedPointer<UtilityButton> plusButton;
+ ScopedPointer<UtilityButton> configButton;
+ ScopedPointer<UtilityButton> removeElectrodeButton;
+ ScopedPointer<UtilityButton> audioMonitorButton;
+ ScopedPointer<ThresholdSlider> thresholdSlider;
+
+ Array<String> advancerNames ;
+ Array<int> advancerIDs;
+ void removeElectrode(int index);
+ void editElectrode(int index, int chan, int newChan);
+
+ int lastId;
+ bool isPlural;
+
+ Font font;
+
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(SpikeSorterEditor);
+
+};
+
+
+
+
+#endif // __SPIKESORTEREDITOR_H_F0BD2DD9__
diff --git a/Source/Processors/Utilities/Splitter.cpp b/Source/Processors/Splitter/Splitter.cpp
similarity index 92%
rename from Source/Processors/Utilities/Splitter.cpp
rename to Source/Processors/Splitter/Splitter.cpp
index 94da0a3565f82ff38e092a32e7cf5aea586c788e..cb1fcdabf0cf805a22cff00afcb71682bce8a2c0 100755
--- a/Source/Processors/Utilities/Splitter.cpp
+++ b/Source/Processors/Splitter/Splitter.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "Splitter.h"
-#include "../Editors/SplitterEditor.h"
+#include "SplitterEditor.h"
#include "../../UI/EditorViewport.h"
diff --git a/Source/Processors/Utilities/Splitter.h b/Source/Processors/Splitter/Splitter.h
similarity index 92%
rename from Source/Processors/Utilities/Splitter.h
rename to Source/Processors/Splitter/Splitter.h
index dcb9734e5aa5792f0ff3c2976435d9cd28203e66..12a6f80bbd87a62a9678b8d2f80c97cd9e8e62b2 100755
--- a/Source/Processors/Utilities/Splitter.h
+++ b/Source/Processors/Splitter/Splitter.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,7 +25,7 @@
#define __SPLITTER_H_A75239F7__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "../GenericProcessor.h"
+#include "../GenericProcessor/GenericProcessor.h"
#include <stdio.h>
diff --git a/Source/Processors/Editors/SplitterEditor.cpp b/Source/Processors/Splitter/SplitterEditor.cpp
similarity index 95%
rename from Source/Processors/Editors/SplitterEditor.cpp
rename to Source/Processors/Splitter/SplitterEditor.cpp
index f2547482e7c1625c7c337728b81e06d112a676a1..3dfc309232b2cde688cc622309b5360d8e544772 100755
--- a/Source/Processors/Editors/SplitterEditor.cpp
+++ b/Source/Processors/Splitter/SplitterEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -22,7 +22,7 @@
*/
#include "SplitterEditor.h"
-#include "../Utilities/Splitter.h"
+#include "Splitter.h"
#include "../../UI/EditorViewport.h"
// PipelineSelectorButton::PipelineSelectorButton()
diff --git a/Source/Processors/Editors/SplitterEditor.h b/Source/Processors/Splitter/SplitterEditor.h
similarity index 92%
rename from Source/Processors/Editors/SplitterEditor.h
rename to Source/Processors/Splitter/SplitterEditor.h
index dcb8e789d31a5009ac2c7251c34c6c5828b838d9..8e57195c27139b809dbecea9cd861f97549c8eb7 100755
--- a/Source/Processors/Editors/SplitterEditor.h
+++ b/Source/Processors/Splitter/SplitterEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,7 +26,7 @@
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
+#include "../Editors/GenericEditor.h"
/**
diff --git a/Source/Processors/Visualization/DataWindow.cpp b/Source/Processors/Visualization/DataWindow.cpp
index e147e090f90198c597df43ab55fb42c701a66c38..62746822919dc2cb4d4895621c1ed21912e3c8f7 100755
--- a/Source/Processors/Visualization/DataWindow.cpp
+++ b/Source/Processors/Visualization/DataWindow.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -34,7 +34,6 @@ DataWindow::DataWindow(Button* cButton, String name)
centreWithSize(800,500);
setUsingNativeTitleBar(true);
setResizable(true,false);
- //setTitleBarHeight(40);
}
DataWindow::~DataWindow()
diff --git a/Source/Processors/Visualization/DataWindow.h b/Source/Processors/Visualization/DataWindow.h
index 7545bbee98ddb8b26a0a736e9cf74dd0a56ea09f..e068e54118f0d38130bd8ec3d7a990bde1e1896b 100755
--- a/Source/Processors/Visualization/DataWindow.h
+++ b/Source/Processors/Visualization/DataWindow.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -28,9 +28,9 @@
/**
- Allows OpenGL visualizers to be placed in their own window.
+ Allows visualizers to be placed in their own window.
- @see DataViewport, OpenGLCanvas
+ @see DataViewport
*/
diff --git a/Source/Processors/Visualization/OpenGLCanvas.cpp b/Source/Processors/Visualization/OpenGLCanvas.cpp
deleted file mode 100755
index 7b3b88b3f012fa29a830bd99ba638f03ee66e71a..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/OpenGLCanvas.cpp
+++ /dev/null
@@ -1,279 +0,0 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-*/
-
-#include "OpenGLCanvas.h"
-#include <stdio.h>
-#include <math.h>
-
-OpenGLCanvas::OpenGLCanvas() : //OpenGLComponent(OpenGLComponent::OpenGLType::openGLDefault, true),
- scrollPix(0), animationIsActive(false), refreshMs(5000),
- scrollBarWidth(15), scrollDiff(0), originalScrollPix(0),
- scrollTime(0), showScrollTrack(true), PI(3.1415926)
-{
-
-}
-
-OpenGLCanvas::~OpenGLCanvas()
-{
-
-}
-
-void OpenGLCanvas::startCallbacks()
-{
- startTimer(refreshMs);
- animationIsActive = true;
-}
-
-void OpenGLCanvas::stopCallbacks()
-{
- stopTimer();
- animationIsActive = false;
-}
-
-void OpenGLCanvas::paint(Graphics& g)
-{
-
- paintCanvas(g);
-
- drawScrollBars(g);
-
-}
-
-void OpenGLCanvas::drawScrollBars(Graphics& g)
-{
-
- //std::cout << "Drawing scroll bars" << std::endl;
-
- float scrollBarY = float(getHeight())/float(getTotalHeight());
- float timeSinceScroll = timer.getMillisecondCounter()-scrollTime;
-
- if (scrollBarY < 1.0f && timeSinceScroll < 1300)
- {
- float alpha;
-
- if (timeSinceScroll < 1000)
- alpha = 1.0f;
- else
- alpha = 1.0f*(1-float(timeSinceScroll-1000)/300.0f);
-
- float Yoffset = float(scrollPix)/float(getTotalHeight());
-
- if (showScrollTrack)
- drawScrollBar(g, 0.995f, 2.0f, alpha*0.2f);
-
- scrollBarBottom = scrollBarY + Yoffset - 2.0f;
- scrollBarTop = Yoffset + 2.0f;
-
- drawScrollBar(g, scrollBarBottom, scrollBarTop, alpha*0.5f);
-
- }
- else
- {
- if (!animationIsActive)
- {
- stopTimer();
- }
- showScrollTrack = false;
- }
-
-}
-
-void OpenGLCanvas::drawScrollBar(Graphics& g, float y1, float y2, float alpha)
-{
- //
- // glViewport(0, getFooterHeight(),
- // getWidth(),
- // getHeight()-getHeaderHeight()-getFooterHeight());
- //
- // float x1 = getWidth()-8.0f;
- //
- // g.setColour(Colours::black.withAlpha(alpha));
- //
- // g.fillRect(x1, y1, 1.0f, y2-y1);
-
-}
-
-void OpenGLCanvas::showScrollBars()
-{
- // scrollTime = timer.getMillisecondCounter();
- // startTimer(refreshMs);
-}
-
-
-void OpenGLCanvas::mouseMove(const MouseEvent& e)
-{
- // if (getTotalHeight() > getHeight()) {
- //
- // Point<int> pos = e.getPosition();
- // int xcoord = pos.getX();
- // if (xcoord > getWidth() - scrollBarWidth)
- // {
- // showScrollTrack = true; showScrollBars();
- // }
- // }
- //
- // mouseMoveInCanvas(e);
-}
-
-void OpenGLCanvas::mouseDown(const MouseEvent& e)
-{
-
- if (getTotalHeight() > getHeight())
- {
-
- Point<int> pos = e.getPosition();
- int xcoord = pos.getX();
-
- if (xcoord > getWidth()-scrollBarWidth)
- {
-
- int ycoord = pos.getY();
-
- float targetPoint = float(ycoord)/float(getHeight());
-
- if (targetPoint < scrollBarTop && targetPoint < scrollBarTop)
- {
-
- scrollPix = int(float(ycoord)/float(getHeight())*float(getTotalHeight()));
-
- }
- else if (targetPoint > scrollBarBottom && targetPoint > scrollBarBottom)
- {
-
- scrollPix = int(float(ycoord)/float(getHeight())*float(getTotalHeight())) -
- (scrollBarBottom-scrollBarTop)*float(getTotalHeight());
-
- }
-
- showScrollTrack = true;
- showScrollBars();
- }
- }
-
- mouseDownInCanvas(e);
-}
-
-void OpenGLCanvas::mouseDrag(const MouseEvent& e)
-{
-
- if (getTotalHeight() > getHeight())
- {
- if (e.getMouseDownX() > getWidth()-scrollBarWidth)
- {
-
- if (float(e.getMouseDownY()/float(getHeight())) > scrollBarTop &&
- float(e.getMouseDownY()/float(getHeight())) < scrollBarBottom)
- {
-
- if (scrollDiff == 0)
- {
- originalScrollPix = scrollPix;
- scrollDiff = 1;
- }
-
- }
-
- if (scrollDiff == 1)
- {
- scrollPix = originalScrollPix +
- float(e.getDistanceFromDragStartY())/float(getHeight())
- * float(getTotalHeight());
-
- if (scrollPix < 0)
- scrollPix = 0;
-
- if (scrollPix + getHeight() > getTotalHeight())
- scrollPix = getTotalHeight() - getHeight();
-
- scrollTime = timer.getMillisecondCounter();
- showScrollTrack = true;
- repaint();
- }
- }
- }
-
- mouseDragInCanvas(e);
-}
-
-void OpenGLCanvas::mouseUp(const MouseEvent& e)
-{
- scrollDiff = 0;
-
- mouseUpInCanvas(e);
-}
-
-int OpenGLCanvas::mouseWheelMove(const MouseEvent& e,
- float wheelIncrementX, float wheelIncrementY)
-
-{
- if (getTotalHeight() > getHeight())
- {
-
- if (wheelIncrementY > 0)
- {
- if (scrollPix + getHeight() < getTotalHeight())
- {
- scrollPix += int(100.0f*wheelIncrementY);
- if (scrollPix + getHeight() > getTotalHeight())
- scrollPix = getTotalHeight() - getHeight();
- }
- }
- else if (wheelIncrementY < 0)
- {
- if (scrollPix > 0)
- {
- scrollPix += int(100.0f*wheelIncrementY);
- if (scrollPix < 0)
- scrollPix = 0;
- }
- }
-
- repaint();
-
- showScrollBars();
-
- }
-
- mouseWheelMoveInCanvas(e, wheelIncrementX, wheelIncrementY);
-
- return 0; //mouseWheelMove should be void according to juce's documentation.
-}
-
-void OpenGLCanvas::timerCallback()
-{
- repaint();
-}
-
-
-void OpenGLCanvas::resized()
-{
-
- if (scrollPix + getHeight() > getTotalHeight() && getTotalHeight() > getHeight())
- scrollPix = getTotalHeight() - getHeight();
- else
- scrollPix = 0;
-
- showScrollBars();
-
- canvasWasResized();
-}
diff --git a/Source/Processors/Visualization/OpenGLCanvas.h b/Source/Processors/Visualization/OpenGLCanvas.h
deleted file mode 100755
index 56e47ca39f765aec86cbf13cd464b61d44ed8724..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/OpenGLCanvas.h
+++ /dev/null
@@ -1,125 +0,0 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-*/
-
-#ifndef __OPENGLCANVAS_H_98F0C13D__
-#define __OPENGLCANVAS_H_98F0C13D__
-
-#include "../../../JuceLibraryCode/JuceHeader.h"
-
-//#include "../../OpenGL.h"
-
-/**
-
- Can be subclassed to create OpenGL visualizers.
-
- Provides convenient methods for loading fonts, setting up a 2D canvas,
- and drawing scroll bars.
-
-*/
-
-class OpenGLCanvas : public Component, Timer
-
-{
-public:
- OpenGLCanvas();
- ~OpenGLCanvas();
-
- virtual void refreshState() {};
-
- void resized();
- virtual void canvasWasResized() { }
-
- void mouseDown(const MouseEvent& e);
- void mouseDrag(const MouseEvent& e);
- void mouseMove(const MouseEvent& e);
- void mouseUp(const MouseEvent& e);
- int mouseWheelMove(const MouseEvent&, float, float);
-
- virtual void mouseDownInCanvas(const MouseEvent& e) {}
- virtual void mouseDragInCanvas(const MouseEvent& e) {}
- virtual void mouseMoveInCanvas(const MouseEvent& e) {}
- virtual void mouseUpInCanvas(const MouseEvent& e) {}
- virtual void mouseWheelMoveInCanvas(const MouseEvent&,
- float,
- float) {}
-
- void startCallbacks();
- void stopCallbacks();
-
- int getScrollAmount()
- {
- return scrollPix;
- };
- int getScrollBarWidth()
- {
- return scrollBarWidth;
- }
- void drawScrollBars(Graphics& g);
-
- virtual int getHeaderHeight()
- {
- return 0;
- }
- virtual int getFooterHeight()
- {
- return 0;
- }
-
- void paint(Graphics& g);
-
- virtual void paintCanvas(Graphics& g) = 0;
-
-protected:
-
- virtual int getTotalHeight()
- {
- return getHeight();
- }
- int scrollPix;
- void showScrollBars();
-
- bool animationIsActive;
-
- int refreshMs;
-
-private:
-
- void drawScrollBar(Graphics& g, float y1, float y2, float alpha);
-
- int scrollBarWidth, scrollDiff, originalScrollPix;
- int scrollTime;
- bool showScrollTrack;
-
- Time timer;
- void timerCallback();
-
- float scrollBarTop, scrollBarBottom;
-
- const float PI;
-
- JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR(OpenGLCanvas);
-
-};
-
-
-#endif // __OPENGLCANVAS_H_98F0C13D__
diff --git a/Source/Processors/Visualization/SpikeObject.cpp b/Source/Processors/Visualization/SpikeObject.cpp
index f63d2d769326c059472cd03e4694f3c966a1288b..702b9cc53a4b1754aa331bfe3420261ed66e93b8 100755
--- a/Source/Processors/Visualization/SpikeObject.cpp
+++ b/Source/Processors/Visualization/SpikeObject.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,6 +26,9 @@
#include <stdlib.h>
#include "time.h"
+#define MIN(a,b)((a)<(b)?(a):(b))
+#define MAX(a,b)((a)<(b)?(b):(a))
+
// Simple method for serializing a SpikeObject into a string of bytes
int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferSize)
{
@@ -34,7 +37,7 @@ int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferSize)
// a pointer to a uint8_t buffer (which will hold the serialized SpikeObject,
// and a integer indicating the bufferSize.
- //int reqBytes = 1 + 4 + 2 + 2 + 2 + 2 * s->nChannels * s->nSamples + 2 * s->nChannels * 2;
+ //int reqBytes = 1 + 4 + 2+2 + 2 + 2 + 2 * s->nChannels * s->nSamples + 2 * s->nChannels * 2;
int idx = 0;
@@ -43,6 +46,9 @@ int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferSize)
memcpy(buffer+idx, &(s->timestamp), 8);
idx += 8;
+
+ memcpy(buffer+idx, &(s->timestamp_software), 8);
+ idx += 8;
memcpy(buffer+idx, &(s->source), 2);
idx +=2;
@@ -53,11 +59,35 @@ int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferSize)
memcpy(buffer+idx, &(s->nSamples), 2);
idx +=2;
+ memcpy(buffer+idx, &(s->sortedId), 2);
+ idx +=2;
+
+ memcpy(buffer+idx, &(s->electrodeID), 2);
+ idx +=2;
+
+ memcpy(buffer+idx, &(s->channel), 2);
+ idx +=2;
+
+ memcpy(buffer+idx, &(s->color[0]), 1);
+ idx +=1;
+ memcpy(buffer+idx, &(s->color[1]), 1);
+ idx +=1;
+ memcpy(buffer+idx, &(s->color[2]), 1);
+ idx +=1;
+
+ memcpy(buffer+idx, &(s->pcProj[0]), sizeof(float));
+ idx +=sizeof(float);
+
+ memcpy(buffer+idx, &(s->pcProj[1]), sizeof(float));
+ idx +=sizeof(float);
+
+ memcpy(buffer+idx, &(s->samplingFrequencyHz), 2);
+ idx +=2;
memcpy(buffer+idx, &(s->data), s->nChannels * s->nSamples * 2);
idx += s->nChannels * s->nSamples * 2;
- memcpy(buffer+idx, &(s->gain), s->nChannels * 2);
- idx += s->nChannels * 2;
+ memcpy(buffer+idx, &(s->gain), s->nChannels * 4); // 4 bytes for a float
+ idx += s->nChannels * 4;
memcpy(buffer+idx, &(s->threshold), s->nChannels * 2);
idx += s->nChannels * 2;
@@ -79,22 +109,25 @@ int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferSize)
bool unpackSpike(SpikeObject* s, const uint8_t* buffer, int bufferSize)
{
//if (!isBufferValid(buffer, bufferSize))
- // return false;
+ // return false;
int idx = 0;
memcpy(&(s->eventType), buffer+idx, 1);
idx += 1;
- // if (s->eventType != 4)
- // {
- // std::cout << "received invalid spike -- incorrect event code" << std::endl;
- // return false;
- // }
+ // if (s->eventType != 4)
+ // {
+ // std::cout << "received invalid spike -- incorrect event code" << std::endl;
+ // return false;
+ // }
memcpy(&(s->timestamp), buffer+idx, 8);
idx += 8;
+ memcpy(&(s->timestamp_software), buffer+idx, 8);
+ idx += 8;
+
memcpy(&(s->source), buffer+idx, 2);
idx += 2;
@@ -122,11 +155,40 @@ bool unpackSpike(SpikeObject* s, const uint8_t* buffer, int bufferSize)
return false;
}
+
+
+ memcpy(&(s->sortedId), buffer+idx, 2);
+ idx +=2;
+
+ memcpy(&(s->electrodeID), buffer+idx, 2);
+ idx +=2;
+
+ memcpy(&(s->channel), buffer+idx, 2);
+ idx +=2;
+
+ memcpy(&(s->color[0]), buffer+idx, 1);
+ idx +=1;
+ memcpy(&(s->color[1]), buffer+idx, 1);
+ idx +=1;
+ memcpy(&(s->color[2]), buffer+idx, 1);
+ idx +=1;
+
+
+
+ memcpy(&(s->pcProj[0]), buffer+idx, sizeof(float));
+ idx +=sizeof(float);
+ memcpy(&(s->pcProj[1]), buffer+idx, sizeof(float));
+ idx +=sizeof(float);
+
+ memcpy(&(s->samplingFrequencyHz), buffer+idx, 2);
+ idx +=2;
+
+
memcpy(&(s->data), buffer+idx, s->nChannels * s->nSamples * 2);
idx += s->nChannels * s->nSamples * 2;
- memcpy(&(s->gain), buffer+idx, s->nChannels * 2);
- idx += s->nChannels * 2;
+ memcpy(&(s->gain), buffer+idx, s->nChannels * 4);
+ idx += s->nChannels * 4;
memcpy(&(s->threshold), buffer+idx, s->nChannels *2);
idx += s->nChannels * 2;
@@ -193,19 +255,19 @@ void generateSimulatedSpike(SpikeObject* s, uint64_t timestamp, int noise)
uint16_t trace[][32] =
{
{
- 880, 900, 940, 1040, 1290, 1790, 2475, 2995, 3110, 2890,
- 2505, 2090, 1720, 1410, 1155, 945, 775, 635, 520, 420,
- 340, 265, 205, 155, 115, 80, 50, 34, 10, 34, 50, 80
+ 880, 900, 940, 1040, 1290, 1790, 2475, 2995, 3110, 2890,
+ 2505, 2090, 1720, 1410, 1155, 945, 775, 635, 520, 420,
+ 340, 265, 205, 155, 115, 80, 50, 34, 10, 34, 50, 80
},
{
- 1040, 1090, 1190, 1350, 1600, 1960, 2380, 2790, 3080, 3140,
- 2910, 2430, 1810, 1180, 680, 380, 270, 320, 460, 630,
- 770, 870, 940, 970, 990, 1000, 1000, 1000, 1000, 1000, 1000, 1000
+ 1040, 1090, 1190, 1350, 1600, 1960, 2380, 2790, 3080, 3140,
+ 2910, 2430, 1810, 1180, 680, 380, 270, 320, 460, 630,
+ 770, 870, 940, 970, 990, 1000, 1000, 1000, 1000, 1000, 1000, 1000
},
{
- 1000, 1000, 1000, 1000, 1000, 1040, 1140, 1440, 2040, 2240,
- 2400, 2340, 2280, 1880, 1640, 920, 520, 300, 140, 040,
- 20, 20, 40, 100, 260, 500, 740, 900, 960, 1000, 1000, 1000
+ 1000, 1000, 1000, 1000, 1000, 1040, 1140, 1440, 2040, 2240,
+ 2400, 2340, 2280, 1880, 1640, 920, 520, 300, 140, 040,
+ 20, 20, 40, 100, 260, 500, 740, 900, 960, 1000, 1000, 1000
}
};
@@ -225,6 +287,7 @@ void generateSimulatedSpike(SpikeObject* s, uint64_t timestamp, int noise)
s->source = 0;
s->nChannels = 4;
s->nSamples = 32;
+ s->electrodeID = 0;
int idx=0;
int waveType = rand()%2; // Pick one of the three predefined waveshapes to generate
@@ -251,21 +314,28 @@ void generateSimulatedSpike(SpikeObject* s, uint64_t timestamp, int noise)
}
}
-void generateEmptySpike(SpikeObject* s, int nChannels)
+
+void generateEmptySpike(SpikeObject* s, int nChannels, int numSamples)
{
s->eventType = SPIKE_EVENT_CODE;
s->timestamp = 0;
s->source = 0;
- s->nChannels = 4;
- s->nSamples = 32;
+ s->nChannels = 1;
+ s->nSamples = numSamples;
+ s->electrodeID = 0;
+ s->samplingFrequencyHz = 30000;
+ s->sortedId = 0;
+ s->color[0] = s->color[1] = s->color[2] = 128;
+ s->pcProj[0] = s->pcProj[1] = 0;
+
int idx = 0;
- for (int i=0; i<4; i++)
+ for (int i=0; i<s->nChannels; i++)
{
- s->gain[i] = 0;
+ s->gain[i] = 0.0;
s->threshold[i] = 0;
- for (int j=0; j<32; j++)
+ for (int j=0; j<s->nSamples; j++)
{
s->data[idx] = 0;
idx = idx+1;
@@ -286,3 +356,47 @@ void printSpike(SpikeObject* s)
std::cout<<s->data+i<<" ";
std::cout<<std::endl;
}
+
+float spikeDataBinToMicrovolts(SpikeObject *s, int bin, int ch)
+{
+ jassert(ch >= 0 && ch < s->nChannels);
+ jassert(bin >= 0 && ch < s->nSamples);
+ float v= float(s->data[bin+ch*s->nSamples]-32768)/float(s->gain[ch])*1000.0f;
+ return v;
+}
+
+
+float spikeDataIndexToMicrovolts(SpikeObject *s, int index)
+{
+ int gain_index = index / s->nSamples;
+ jassert(gain_index >= 0 && gain_index < s->nChannels);
+ float v= float(s->data[index]-32768)/float(s->gain[gain_index])*1000.0f;
+ return v;
+}
+
+
+
+int microVoltsToSpikeDataBin(SpikeObject *s, float uV, int ch)
+{
+ return uV/1000.0f*float(s->gain[ch])+32768;
+}
+
+
+
+
+float spikeTimeBinToMicrosecond(SpikeObject *s, int bin, int ch)
+{
+ float spikeTimeSpan = 1.0f/s->samplingFrequencyHz * s->nSamples * 1e6;
+ return float(bin)/(s->nSamples-1) * spikeTimeSpan;
+}
+
+int microSecondsToSpikeTimeBin(SpikeObject *s, float t, int ch)
+{
+ // Lets say we have 32 samples per wave form
+
+ // t = 0 corresponds to the left most index.
+ float spikeTimeSpan = (1.0f/s->samplingFrequencyHz * s->nSamples)*1e6;
+ return MIN(s->nSamples-1, MAX(0,t/spikeTimeSpan * (s->nSamples-1)));
+}
+
+
diff --git a/Source/Processors/Visualization/SpikeObject.h b/Source/Processors/Visualization/SpikeObject.h
index 6c99dc0b5e0094d26bdd789aa689d4ee09866bf0..a386ee0ef097f0c557f559a68b3a2eb64dac16a6 100755
--- a/Source/Processors/Visualization/SpikeObject.h
+++ b/Source/Processors/Visualization/SpikeObject.h
@@ -24,16 +24,18 @@
#ifndef SPIKEOBJECT_H_
#define SPIKEOBJECT_H_
+#include "../../../JuceLibraryCode/JuceHeader.h"
#include <iostream>
#include <stdint.h>
#include <math.h>
+#define SPIKE_METADATA_SIZE 42
#define MAX_NUMBER_OF_SPIKE_CHANNELS 4
-#define MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES 60
+#define MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES 80
#define CHECK_BUFFER_VALIDITY true
#define SPIKE_EVENT_CODE 4;
#define MAX_SPIKE_BUFFER_LEN 512 // max length of spike buffer in bytes
-// the true max calculated from the spike values below is actually 507
+ // the true max calculated from the spike values below is actually 507
#define SPIKE_BASE_CODE 100
@@ -60,16 +62,31 @@ struct SpikeObject
{
uint8_t eventType;
- uint64_t timestamp;
- uint16_t source;
+ int64_t timestamp;
+ int64_t timestamp_software;
+ uint16_t source; // used internally, the index of the electrode in the electrode array
uint16_t nChannels;
uint16_t nSamples;
- uint16_t data[MAX_NUMBER_OF_SPIKE_CHANNELS* MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES];
- uint16_t gain[MAX_NUMBER_OF_SPIKE_CHANNELS];
+ uint16_t sortedId; // sorted unit ID (or 0 if unsorted)
+ uint16_t electrodeID; // unique electrode ID (regardless electrode position in the array)
+ uint16_t channel; // the channel in which threshold crossing was detected (index in channel array, not absolute channel number).
+ uint8_t color[3];
+ float pcProj[2];
+ uint16_t samplingFrequencyHz;
+ uint16_t data[MAX_NUMBER_OF_SPIKE_CHANNELS * MAX_NUMBER_OF_SPIKE_CHANNEL_SAMPLES];
+ float gain[MAX_NUMBER_OF_SPIKE_CHANNELS];
uint16_t threshold[MAX_NUMBER_OF_SPIKE_CHANNELS];
-
};
+
+
+float spikeDataIndexToMicrovolts(SpikeObject *s, int index);
+
+float spikeDataBinToMicrovolts(SpikeObject *s, int bin, int ch = 0);
+int microVoltsToSpikeDataBin(SpikeObject *s, float uV, int ch = 0);
+float spikeTimeBinToMicrosecond(SpikeObject *s, int bin, int ch=0);
+int microSecondsToSpikeTimeBin(SpikeObject *s, float t, int ch=0);
+
/** Simple method for serializing a SpikeObject into a string of bytes, returns true is the packaged spike buffer is valid */
int packSpike(const SpikeObject* s, uint8_t* buffer, int bufferLength);
@@ -91,7 +108,7 @@ void generateSimulatedSpike(SpikeObject* s, uint64_t timestamp, int noise);
// std::ostream& operator<<(std::ostream &strm, const SpikeObject s);
/** Helper function for zeroing out a spike object with a specified number of channels */
-void generateEmptySpike(SpikeObject* s, int nChannels);
+void generateEmptySpike(SpikeObject* s, int nChannels, int numSamples);
void printSpike(SpikeObject* s);
diff --git a/Source/Processors/Visualization/SpikePlotting/BaseUIElement.cpp b/Source/Processors/Visualization/SpikePlotting/BaseUIElement.cpp
deleted file mode 100755
index 29cd1e79fbb47a42f8bed5a0f3201ea86ffa5214..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/BaseUIElement.cpp
+++ /dev/null
@@ -1,102 +0,0 @@
-#include "BaseUIElement.h"
-
-BaseUIElement::BaseUIElement():
- xpos(0), ypos(0), yOffset(0),
- height(100), width(100), enabled(true), padding(0)
-{
-}
-
-BaseUIElement::BaseUIElement(int x, int y, double w, double h):
- yOffset(0), enabled(true), padding(0)
-{
- xpos = x+padding;
- ypos = y+padding;
- width = w-padding*2;
- height = h-padding*2;
-}
-BaseUIElement::BaseUIElement(int x, int y, double w, double h, int p):
- enabled(true), padding(p)
-{
- xpos = x+padding;
- ypos = y+padding;
- width = w-padding*2;
- height = h-padding*2;
-}
-
-void BaseUIElement::redraw()
-{
- // std::cout<<"BaseUIElement::redraw(), Position:"<<xpos<<","<<ypos<<" : "<<width<<","<<height<<std::endl;
- setGlViewport();
-
- // if (clearNextDraw || !clearNextDraw){
- // clearNextDraw = false;
- glColor3f(0.0, 0.0, 0.0);
- glRecti(-1,-1,1,1);
-
-
- // }
-}
-void BaseUIElement::drawElementEdges()
-{
- // std::cout<<"BaseUIElement::drawBaseUIElementEdges(), Position:"<<xpos<<","<<ypos<<" : "<<width<<","<<height<<std::endl;
- glColor3f(1.0, 1.0, 1.0);
- setGlViewport();
- glLineWidth(2);
- drawViewportEdge();
-}
-void BaseUIElement::setEnabled(bool e)
-{
- enabled = e;
-}
-bool BaseUIElement::getEnabled()
-{
- return enabled;
-}
-void BaseUIElement::setGlViewport()
-{
-
- glLoadIdentity();
- glViewport(xpos, ypos, width, height);
-
- // std::cout<<xpos<<"x"<<ypos<<"-"<<width<<"x"<<height<<"\t"<<BaseUIElementName<<std::endl;
-}
-void BaseUIElement::setPosition(int x, int y, double w, double h)
-{
- xpos = x+padding;
- ypos = y+padding;
- width = w - padding*2;
- height = h - padding*2;
-}
-
-void BaseUIElement::getPosition(int* x, int* y, double* w, double* h)
-{
- *x = xpos;
- *y = ypos;
- *w = width;
- *h = height;
-}
-// void BaseUIElement::clearOnNextDraw(bool c){
-// clearNextDraw = c;
-// }
-
-bool BaseUIElement::hitTest(int x, int y)
-{
- return (x > xpos && x < xpos+width) && (y > ypos && y < ypos+height);
-}
-
-double BaseUIElement::getHeight()
-{
- return height;
-}
-double BaseUIElement::getWidth()
-{
- return width;
-}
-int BaseUIElement::getX()
-{
- return xpos;
-}
-int BaseUIElement::getY()
-{
- return ypos;
-}
diff --git a/Source/Processors/Visualization/SpikePlotting/BaseUIElement.h b/Source/Processors/Visualization/SpikePlotting/BaseUIElement.h
deleted file mode 100755
index 7c5afed103f03b686573aedef307bb4a48db7a06..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/BaseUIElement.h
+++ /dev/null
@@ -1,59 +0,0 @@
-#ifndef BASEUIELEMENT_H_
-#define BASEUIELEMENT_H_
-
-#include "PlotUtils.h"
-#include "../SpikeObject.h"
-
-class SpikeObject;
-
-/**
-
- Base class for drawing spike plots in OpenGL.
-
- @see SpikeDisplayCanvas
-
-*/
-
-class BaseUIElement
-{
-
-protected:
- int xpos, ypos, yOffset;
- double height, width;
- bool enabled;
- double padding;
-
- void setGlViewport();
-
-public:
- BaseUIElement();
- BaseUIElement(int x, int y, double w, double h);
- BaseUIElement(int x, int y, double w, double h, int p);
-
- virtual void redraw();
- void drawElementEdges();
- virtual void setEnabled(bool e);
- virtual bool getEnabled();
- virtual void setPosition(int x, int y, double w, double h);
- virtual void setPosition(int, int) {}
- virtual void getPosition(int*, int*, double*, double*);
- double getHeight();
- double getWidth();
- int getX();
- int getY();
-
- // needed for spike display object subclasses:
- virtual void processSpikeObject(SpikeObject s) {}
- virtual void pan(int, bool) {}
- virtual void zoom(int, bool) {}
- virtual void clear() {}
-
- // void clearOnNextDraw(bool);
- // bool clearNextDraw;
- bool hitTest(int x, int y);
-
-};
-
-
-
-#endif // BaseUIElement_H_
diff --git a/Source/Processors/Visualization/SpikePlotting/GenericAxes.cpp b/Source/Processors/Visualization/SpikePlotting/GenericAxes.cpp
deleted file mode 100755
index b87870d5b238007a31babdbac9602dc44a449d37..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/GenericAxes.cpp
+++ /dev/null
@@ -1,80 +0,0 @@
-#include "GenericAxes.h"
-
-GenericAxes::GenericAxes()
- : BaseUIElement(), gotFirstSpike(false), type(0)
-{
- ylims[0] = 0;
- ylims[1] = 1;
- loadFont();
-}
-
-GenericAxes::GenericAxes(int x, int y, double w, double h, int t):
- BaseUIElement(x,y,w,h),
- gotFirstSpike(false)
-{
- type = t;
- loadFont();
-}
-GenericAxes::~GenericAxes()
-{
- //delete font;
-}
-void GenericAxes::updateSpikeData(SpikeObject newSpike)
-{
- if (!gotFirstSpike)
- {
- gotFirstSpike = true;
- }
-
- s = newSpike;
-}
-
-void GenericAxes::loadFont()
-{
- const unsigned char* buffer = reinterpret_cast<const unsigned char*>(BinaryData::cpmono_plain_otf);
- size_t bufferSize = BinaryData::cpmono_plain_otfSize;
- font = new FTPixmapFont(buffer, bufferSize);
-}
-
-void GenericAxes::setYLims(double ymin, double ymax)
-{
-
- std::cout << "setting y limits to " << ymin << " " << ymax << std::endl;
- ylims[0] = ymin;
- ylims[1] = ymax;
-}
-void GenericAxes::getYLims(double* min, double* max)
-{
- *min = ylims[0];
- *max = ylims[1];
-}
-void GenericAxes::setXLims(double xmin, double xmax)
-{
- xlims[0] = xmin;
- xlims[1] = xmax;
-}
-void GenericAxes::getXLims(double* min, double* max)
-{
- *min = xlims[0];
- *max = xlims[1];
-}
-
-void GenericAxes::setType(int t)
-{
- if (t < WAVE1 || t > PROJ3x4)
- {
- std::cout<<"Invalid Axes type specified";
- return;
- }
- type = t;
-}
-
-int GenericAxes::getType()
-{
- return type;
-}
-
-void GenericAxes::setPosition(int x, int y, double w, double h)
-{
- BaseUIElement::setPosition(x,y,w,h);
-}
diff --git a/Source/Processors/Visualization/SpikePlotting/GenericAxes.h b/Source/Processors/Visualization/SpikePlotting/GenericAxes.h
deleted file mode 100755
index 43be58dad7a05c26e812ac45c63306e28787c958..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/GenericAxes.h
+++ /dev/null
@@ -1,68 +0,0 @@
-#ifndef GENERIC_AXES_H_
-#define GENERIC_AXES_H_
-
-
-#if defined(__linux__)
-#include <GL/glut.h>
-#else
-#include <GLUT/glut.h>
-#endif
-#include <stdlib.h>
-#include <FTGL/ftgl.h>
-#include "../../../../JuceLibraryCode/JuceHeader.h"
-
-#include "../SpikeObject.h"
-
-#include "BaseUIElement.h"
-#include "PlotUtils.h"
-
-/**
-
- Base class for drawing axes with OpenGL.
-
- @see BaseUIElement, ProjectionAxes, WaveAxes
-
-*/
-
-class GenericAxes: public BaseUIElement
-{
-
-protected:
- double xlims[2];
- double ylims[2];
- SpikeObject s;
-
- bool gotFirstSpike;
-
- int type;
- virtual void plot() {}
-
- FTPixmapFont* font;
- void loadFont();
-
-
-public:
- GenericAxes();
- GenericAxes(int x, int y, double w, double h, int t);
- virtual ~GenericAxes();
-
- void updateSpikeData(SpikeObject s);
-
- virtual void redraw() {}
-
- void setXLims(double xmin, double xmax);
- void getXLims(double* xmin, double* xmax);
- void setYLims(double ymin, double ymax);
- void getYLims(double* ymin, double* ymax);
-
- void setType(int type);
- int getType();
-
-
- void setPosition(int,int,double,double);
-
-};
-
-
-
-#endif
diff --git a/Source/Processors/Visualization/SpikePlotting/PlotUtils.cpp b/Source/Processors/Visualization/SpikePlotting/PlotUtils.cpp
deleted file mode 100755
index 3f2e25d2f843b53f542e094313fc5d6e18845ed2..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/PlotUtils.cpp
+++ /dev/null
@@ -1,251 +0,0 @@
-#include "PlotUtils.h"
-
-void checkGlError()
-{
- GLenum errCode;
- const GLubyte* errString;
- if ((errCode = glGetError()) != GL_NO_ERROR)
- {
- errString = gluErrorString(errCode);
- fprintf(stderr, "OpenGL Error: %s\n", errString);
- exit(1);
- }
- else
- std::cout<<"OpenGL Okay!"<<std::endl;
-}
-
-void drawString(float x, float y, void* f, const char* string)
-{
- glRasterPos2f(x, y);
- int len = strlen(string);
- // glColor3f(1.0, 1.0, 1.0);
- for (int i = 0; i < len; i++)
- {
- //glutBitmapCharacter(f, string[i]);
- }
-}
-
-void drawString(float x, float y, int size, String s, FTPixmapFont* f)
-{
-
- glRasterPos2f(x, y);
-
- //f->FaceSize(size);
- //f->Render(s);
-}
-
-void drawViewportEdge()
-{
-
- glPushMatrix();
- glLoadIdentity();
-
- glBegin(GL_LINE_LOOP);
- glVertex2f(-.995, -.995);
- glVertex2f(.995, -.995);
- glVertex2f(.995, .995);
- glVertex2f(-.995, .995);
- glEnd();
-
- glPopMatrix();
-}
-
-void drawViewportCross()
-{
-
- glColor3f(0.0,1.0,1.0);
-
- glPushMatrix();
- glLoadIdentity();
-
- glBegin(GL_LINE_LOOP);
- glVertex2f(-.995, -.995);
- glVertex2f(.995, .995);
- glVertex2f(.995, -.995);
- glVertex2f(-.995, .995);
- glEnd();
-
- glPopMatrix();
-}
-
-void setViewportRange(int xMin,int yMin,int xMax,int yMax)
-{
-
- float dx = xMax-xMin;
- float dy = yMax-yMin;
-
- // printf("Setting viewport to:%d,%d %d,%d with dims%d,%d %d,%d\n", x,y,w,h, xMin, xMin, xMax,yMax);
- // printf("Dx:%f Dy:%f, Scaling viewport by:%f,%f \n", dx,dy,2.0/dx, 2.0/dy);
- glLoadIdentity();
- glTranslatef(-1.0,-1.0,0.0);
- glScalef(2.0f/dx, 2.0f/dy, 1.0);
- glTranslatef(0-xMin, 0-yMin, 0);
-
-}
-int roundUp(int numToRound, int multiple)
-{
- if (multiple == 0)
- {
- return numToRound;
- }
-
- int remainder = numToRound % multiple;
- if (remainder == 0)
- return numToRound;
- return numToRound + multiple - remainder;
-}
-
-double ad16ToUv(int x, int gain)
-{
- int result = (double)(x * 20e6) / (double)(gain * pow(2.0,16));
- return result;
-}
-
-void makeLabel(int val, int gain, bool convert, char* s)
-{
- if (convert)
- {
- double volt = ad16ToUv(val, gain)/1000.;
- if (abs(val)>1e6)
- {
- //val = val/(1e6);
- sprintf(s, "%.2fV", volt);
- }
- else if (abs(val)>1e3)
- {
- //val = val/(1e3);
- sprintf(s, "%.2fmV", volt);
- }
- else
- sprintf(s, "%.2fuV", volt);
- }
- else
- sprintf(s,"%d", (int)val);
-}
-
-void n2ProjIdx(int proj, int* p1, int* p2)
-{
- int d1, d2;
- if (proj==PROJ1x2)
- {
- d1 = 0;
- d2 = 1;
- }
- else if (proj==PROJ1x3)
- {
- d1 = 0;
- d2 = 2;
- }
- else if (proj==PROJ1x4)
- {
- d1 = 0;
- d2 = 3;
- }
- else if (proj==PROJ2x3)
- {
- d1 = 1;
- d2 = 2;
- }
- else if (proj==PROJ2x4)
- {
- d1 = 1;
- d2 = 3;
- }
- else if (proj==PROJ3x4)
- {
- d1 = 2;
- d2 = 3;
- }
- else
- {
- std::cout<<"Invalid projection:"<<proj<<"! Cannot determine d1 and d2"<<std::endl;
- *p1 = -1;
- *p2 = -1;
- return;
- }
- *p1 = d1;
- *p2 = d2;
-}
-
-
-bool isFrameBufferExtensionSupported()
-{
-
- std::cout<<"Checking to see if the OpenGL Frame Buffer Extension is Supported"<<std::endl;
-
- char* str = 0;
- char* tok = 0;
-
- std::string fboExt = "GL_EXT_framebuffer_object";
-
- str = (char*)glGetString(GL_EXTENSIONS);
-
- if (str)
- {
- std::vector <std::string> extensions;
- tok = strtok((char*)str, " ");
- while (tok)
- {
-
- std::string ext = tok;
-
- if (ext == fboExt)
- return true;
-
- tok = strtok(0, " ");
- }
- return false;
- }
- else
- return false;
-}
-
-bool checkFramebufferStatus()
-{
- // check FBO status
- GLenum status = glCheckFramebufferStatusEXT(GL_FRAMEBUFFER_EXT);
- return status == GL_FRAMEBUFFER_COMPLETE_EXT;
-
- switch (status)
- {
- case GL_FRAMEBUFFER_COMPLETE_EXT:
- std::cout << "Framebuffer complete." << std::endl;
- return true;
-
- case GL_FRAMEBUFFER_INCOMPLETE_ATTACHMENT_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: Attachment is NOT complete." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: No image is attached to FBO." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_INCOMPLETE_DIMENSIONS_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: Attached images have different dimensions." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_INCOMPLETE_FORMATS_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: Color attached images have different internal formats." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_INCOMPLETE_DRAW_BUFFER_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: Draw buffer." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_INCOMPLETE_READ_BUFFER_EXT:
- std::cout << "[ERROR] Framebuffer incomplete: Read buffer." << std::endl;
- return false;
-
- case GL_FRAMEBUFFER_UNSUPPORTED_EXT:
- std::cout << "[ERROR] Unsupported by FBO implementation." << std::endl;
- return false;
-
- default:
- std::cout << "[ERROR] Unknown error." << std::endl;
- return false;
- }
-}
-
-// std::addressof was introduced in C++11, an equivalent function is defined below
-// definition from http://en.cppreference.com/w/cpp/memory/addressof
-
diff --git a/Source/Processors/Visualization/SpikePlotting/PlotUtils.h b/Source/Processors/Visualization/SpikePlotting/PlotUtils.h
deleted file mode 100755
index f3ba34836ba65558ccb673c8a21da1248c02cb8a..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/PlotUtils.h
+++ /dev/null
@@ -1,66 +0,0 @@
-#ifndef PLOT_UTILS_H_
-#define PLOT_UTILS_H_
-
-#define GL_GLEXT_PROTOTYPES
-
-#if defined(__linux__)
-#include <GL/glut.h>
-#elif defined(WIN32)
-#undef GL_GLEXT_PROTOTYPES
-#include <GLUT/glut.h>
-#include <gl/GLU.h>
-#include "..\..\..\glWinInit.h"
-#else // assume OS X
-#include <GLUT/glut.h>
-#include <OpenGL/glu.h>
-#include <OpenGL/glext.h>
-#endif
-
-#include <stdio.h>
-#include <math.h>
-#include <cstring>
-#include <string>
-#include <iostream>
-#include <vector>
-#include <FTGL/ftgl.h>
-
-#include "../../../../JuceLibraryCode/JuceHeader.h"
-
-#define WAVE1 0
-#define WAVE2 1
-#define WAVE3 2
-#define WAVE4 3
-#define PROJ1x2 4
-#define PROJ1x3 5
-#define PROJ1x4 6
-#define PROJ2x3 7
-#define PROJ2x4 8
-#define PROJ3x4 9
-
-void checkGlError();
-void setViewportRange(int xMin,int xMax,int yMin,int yMax);
-
-void drawString(float x, float y, void* f, const char* string);
-void drawString(float x, float y, int size, String s, FTPixmapFont* f);
-
-void drawViewportEdge();
-
-void drawViewportCross();
-
-int roundUp(int, int);
-
-double ad16ToUv(int ad, int gain);
-
-void makeLabel(int val, int gain, bool convert, char* s);
-
-void n2ProjIdx(int i, int* p1, int* p2);
-
-template< class T >
-T* addressof(T& arg)
-{
- return (T*)&(char&)arg;
-}
-
-bool isFrameBufferExtensionSupported();
-bool checkFramebufferStatus();
-#endif
\ No newline at end of file
diff --git a/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.cpp b/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.cpp
deleted file mode 100755
index 90567594a87feb3e40fa3ab72e18dd174e4227d1..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.cpp
+++ /dev/null
@@ -1,364 +0,0 @@
-#include "ProjectionAxes.h"
-
-ProjectionAxes::ProjectionAxes()
- : GenericAxes(),
- buffIdx(-1), totalSpikes(0), newSpike(false), isTextureValid(false),
- fboCreated(false), allSpikesNextRender(false), overlay(false),
- drawGrid(false), convertLabelUnits(true)
-{
- GenericAxes::type = PROJ1x2;
- GenericAxes::gotFirstSpike = false;
-
- ylims[0] = 0;
- ylims[1] = 1;
- setPointColor(1.0,1.0,1.0);
- n2ProjIdx(type, &Dim1, &Dim2);
-
- clearOnNextDraw = false;
-
-}
-
-ProjectionAxes::ProjectionAxes(int x, int y, double w, double h, int t)
- : GenericAxes(x,y,w,h,t),
- buffIdx(-1), totalSpikes(0), newSpike(false), isTextureValid(false),
- fboCreated(false), allSpikesNextRender(false), overlay(false),
- drawGrid(true), convertLabelUnits(true)
-{
- GenericAxes::gotFirstSpike = false;
-
- setPointColor(1.0,1.0,1.0);
-
- n2ProjIdx(type, &Dim1, &Dim2);
-
- clearOnNextDraw = false;
-}
-
-void ProjectionAxes::updateSpikeData(SpikeObject s)
-{
- //std::cout<<"ProjectionAxes::updateSpikeData()"<<std::endl;
- GenericAxes::updateSpikeData(s);
-
- buffIdx++;
- if (buffIdx >= AMP_BUFF_MAX_SIZE)
- buffIdx %= AMP_BUFF_MAX_SIZE;
-
- int idx1, idx2;
- calcWaveformPeakIdx(ampDim1,ampDim2,&idx1, &idx2);
-
- ampBuffer[0][buffIdx] = (s.data[idx1] - 32768);
- ampBuffer[1][buffIdx] = (s.data[idx2] - 32768);
- newSpike = true;
-}
-
-void ProjectionAxes::redraw()
-{
-
- BaseUIElement::redraw();
-
- plot();
-
- BaseUIElement::drawElementEdges();
-}
-
-
-void ProjectionAxes::plot()
-{
- //setViewportRange(xlims[0], ylims[0], xlims[1], ylims[1]);
-
- GLenum errCode;
- const GLubyte* errString;
-
- // Should we plot all spikes to the texture or just the newest one
- bool allSpikes = false;
-
- if (!isTextureValid)
- {
- std::cout<<"ProjectionAxes::plot() --> Texture is invalid regenerating it!"<<std::endl;
- createTexture();
- allSpikes = true;
- }
-
- if (clearOnNextDraw)
- {
- clearTexture();
- clearOnNextDraw = false;
- }
-
- drawSpikesToTexture(allSpikes);
- drawTexturedQuad();
- plotNewestSpike();
-
- // if there has been an openGL error we need to rerender the texture and replot everything
- // errors occur when the openGL context has been destroyed and recreated. I'm not sure how to
- // explicitly catch that event so instead we check for a drawing error.
- if ((errCode = glGetError()) != GL_NO_ERROR)
- {
- errString = gluErrorString(errCode);
- std::cout<<"OpenGL Error:"<< errString << "! Invalidating and rerendering the texture!" << std::endl;
-
- invalidateTexture();
- plot();
- return;
- }
- // else
- // std::cout<<"All is good no errors detected"<<std::endl;
-}
-
-void ProjectionAxes::plotOldSpikes(bool allSpikes)
-{
- //std::cout<<"ProjectionAxes::plotOldSpikes() allSpikes:"<<allSpikes<<std::endl;
-
- //set the viewport to the size of the texture
- glViewport(0,0,texWidth, texHeight);
-
- //set the plotting range for the viewport to the limits of the plot
- setViewportRange(xlims[0], ylims[0], xlims[1], ylims[1]);
-
- // if allSpikes plot start with 1 else start with buffIdx
- int startIdx = (allSpikes) ? 1 : buffIdx;
- // either plot to totalSpikes or the end of the buffer if total spikes has wrapped
- int stopIdx = (totalSpikes > AMP_BUFF_MAX_SIZE) ? AMP_BUFF_MAX_SIZE : buffIdx;
-
- // if (allSpikes)
- // std::cout<<"\tUpdating texture with all spikes: "<< stopIdx - startIdx + 1 <<std::endl;
-
- glColor3f(1.0, 1.0, 1.0);
- glPointSize(1);
- glBegin(GL_POINTS);
- for (int i=startIdx; i<=stopIdx; i++)
- glVertex2i(ampBuffer[0][i], ampBuffer[1][i]);
- glEnd();
-
-}
-
-
-void ProjectionAxes::plotNewestSpike()
-{
-
- BaseUIElement::setGlViewport();
- setViewportRange(xlims[0], ylims[0], xlims[1], ylims[1]);
-
- // draw the newest spike as a big red point so it stands out against the old spikes
- glColor3f(1.0, 0.0, 0.0);
- glPointSize(4);
-
- if (gotFirstSpike)
- {
-
- glBegin(GL_POINTS);
- glVertex2i(ampBuffer[0][buffIdx], ampBuffer[1][buffIdx]);
- glEnd();
- }
-
- newSpike = false;
-}
-
-void ProjectionAxes::calcWaveformPeakIdx(int d1, int d2, int* idx1, int* idx2)
-{
-
- int max1 = -1*pow(2.0,15);
- int max2 = max1;
-
- for (int i=0; i<s.nSamples ; i++)
- {
- if (s.data[d1*s.nSamples + i] > max1)
- {
- *idx1 = d1*s.nSamples+i;
- max1 = s.data[*idx1];
- }
- if (s.data[d2*s.nSamples+i] > max2)
- {
- *idx2 = d2*s.nSamples+i;
- max2 = s.data[*idx2];
- }
- }
-}
-
-void ProjectionAxes::setPosition(int x, int y, int w, int h)
-{
- // std::cout<<"ProjectionAxes::setPosition()"<<std::endl;
-
- // only invalidate the texture if its size has actually changed
- if (w!=GenericAxes::width || h!=GenericAxes::height)
- invalidateTexture();
-
- GenericAxes::setPosition(x,y,w,h);
-}
-
-void ProjectionAxes::setPointColor(GLfloat r, GLfloat g, GLfloat b)
-{
- pointColor[0] = r;
- pointColor[1] = g;
- pointColor[2] = b;
-}
-void ProjectionAxes::setGridColor(GLfloat r, GLfloat g, GLfloat b)
-{
- gridColor[0] = r;
- gridColor[1] = g;
- gridColor[2] = b;
-}
-
-
-void ProjectionAxes::createTexture()
-{
-
- texWidth = BaseUIElement::width;
- texHeight = BaseUIElement::height;
-
- std::cout<<"Creating a new texture of size:"<<texWidth<<"x"<<texHeight;//<<std::endl;
- // Delete the old texture
- glDeleteTextures(1, &textureId);
- // Generate a new texture
- glGenTextures(1, &textureId);
- std::cout<<" textureId:"<<textureId<<std::endl;
- // Bind the texture, and set the appropriate parameters
- glBindTexture(GL_TEXTURE_2D, textureId);
- glTexParameteri(GL_TEXTURE_2D, GL_GENERATE_MIPMAP, GL_TRUE);
- glTexImage2D(GL_TEXTURE_2D, 0, GL_RGBA8, texWidth, texHeight, 0, GL_RGBA, GL_UNSIGNED_BYTE, 0);
- glGenerateMipmap(GL_TEXTURE_2D);
- // generate a new FrameBufferObject
- createFBO();
-
- // the texture should now be valid, set the flag appropriately
- isTextureValid = true;
-
-}
-
-void ProjectionAxes::createFBO()
-{
- std::cout<<"Creating a new FBO, is already created?:"<<fboCreated<<" ";//<<std::endl;
-
- // if (!isTextureValid)
- // createTexture();
- // Delete the old frame buffer, render buffer
- if (fboCreated)
- {
- glDeleteFramebuffers(1, &fboId);
- glDeleteRenderbuffers(1, &rboId);
- }
-
- // Generate and Bind the frame buffer
- glGenFramebuffersEXT(1, &fboId);
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, fboId);
-
- // Generate and bind the new Render Buffer
- glGenRenderbuffersEXT(1, &rboId);
- glBindRenderbufferEXT(GL_RENDERBUFFER_EXT, rboId);
- std::cout << " fboID:" << fboId << " rboID:" << rboId << std::endl;
-
-
- glRenderbufferStorageEXT(GL_RENDERBUFFER_EXT, GL_DEPTH_COMPONENT, texWidth, texHeight);
- glBindRenderbufferEXT(GL_RENDERBUFFER_EXT, 0);
-
- // Attach the texture to the framebuffer
- glFramebufferTexture2DEXT(GL_FRAMEBUFFER_EXT, GL_COLOR_ATTACHMENT0_EXT, GL_TEXTURE_2D, textureId, 0);
- glFramebufferRenderbufferEXT(GL_FRAMEBUFFER_EXT, GL_DEPTH_ATTACHMENT_EXT, GL_RENDERBUFFER_EXT, rboId);
-
- // If the FrameBuffer wasn't created then we have a bigger problem. Abort the program.
- if (!checkFramebufferStatus())
- {
- std::cout<<"FrameBufferObject not created! Are you running the newest version of OpenGL?"<<std::endl;
- std::cout<<"FrameBufferObjects are REQUIRED! Quitting!"<<std::endl;
- exit(1);
- }
- glClearColor(0.0, 0.0, 0.0, 0.0);
- glClear(GL_COLOR_BUFFER_BIT);
-
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, 0);
- fboCreated = true;
-}
-
-
-void ProjectionAxes::drawSpikesToTexture(bool allSpikes)
-{
-
- //std::cout<<"ProjectionAxes::drawSpikesToTexture() plotting all spikes:"<<allSpikes<<std::endl;
-
-
- // For some reason if we want to plot ALL the spikes to a texture we must plot two draw cycles
- // in a row, perhaps this has to do with double buffering, I'm not sure why... investigate this!
-
- // if the allSpikes flag is set we set the allSpikesNextRender as true so we plot next
- // all spikes next render cycle too, if only the allSpikesNextRender is true we set all spikes
- // to true and allSpikes next render to false.
-
- //Basically this logic ensures that if allSpikes is ever set to true it will be set to true
- //on the next call to drawSpikesToTexture() regardless of what value it is actually set to
- if (allSpikes)
- allSpikesNextRender = true;
- else if (!allSpikes && allSpikesNextRender)
- {
- allSpikes = true;
- allSpikesNextRender = false;
- }
- // set the rendering destination to FBO
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, fboId);
-
- // plot to the texture
- if (gotFirstSpike)
- plotOldSpikes(allSpikes);
-
- // bind the original FrameBuffer
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, 0);
-}
-
-void ProjectionAxes::invalidateTexture()
-{
- isTextureValid = false;
-}
-
-
-void ProjectionAxes::drawTexturedQuad()
-{
- BaseUIElement::setGlViewport();
- // We need to scale the viewport in this case because we want to fill it with a quad.
- // if we load identity then we can use a quad bound by (-1, 1);
- glLoadIdentity();
-
- // Bind the texture to render
- glBindTexture(GL_TEXTURE_2D, textureId);
-
- // Build the quad
- int size = 1;
- int texS = 1;
- glBegin(GL_QUADS);
- glColor4f(1, 1, 1, 1);
- glTexCoord2f(texS, texS);
- glVertex3f(size, size,0);
- glTexCoord2f(0, texS);
- glVertex3f(-1 * size , size,0);
- glTexCoord2f(0, 0);
- glVertex3f(-1 * size, -1 * size,0);
- glTexCoord2f(texS, 0);
- glVertex3f(size, -1 * size,0);
- glEnd();
-
- // Unbind the texture
- glBindTexture(GL_TEXTURE_2D, 0);
-}
-
-void ProjectionAxes::clear()
-{
-
- //reset buffIDx and totalSpikes
- buffIdx = 0;
- totalSpikes = 0;
-
- // set flag to clear on next draw
- clearOnNextDraw = true;
-}
-
-void ProjectionAxes::clearTexture()
-{
- std::cout<<"ProjectinAxes::clearTexture() --> Clearing the Texture!"<<std::endl;
-
- glViewport(0,0,texWidth, texHeight);
- setViewportRange(xlims[0], ylims[0], xlims[1], ylims[1]);
-
- // set the rendering destination to FBO
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, fboId);
- // Clear the framebufferObject
- glClearColor(0, 0, 0, 1);
- glClear(GL_COLOR_BUFFER_BIT);
- glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, 0);
-}
diff --git a/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.h b/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.h
deleted file mode 100755
index 7c2fd142b4bba4a8325e873a1c452dff7c348ccb..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/ProjectionAxes.h
+++ /dev/null
@@ -1,102 +0,0 @@
-#ifndef PROJECTION_AXES_H_
-#define PROJECTION_AXES_H_
-
-#define GL_GLEXT_PROTOTYPES
-
-#if defined(__linux__)
-#include <GL/glut.h>
-#else
-#include <GLUT/glut.h>
-#endif
-#include <stdlib.h>
-#include "BaseUIElement.h"
-#include "../SpikeObject.h"
-#include "PlotUtils.h"
-#include "GenericAxes.h"
-#include <stdint.h>
-
-#define AMP_BUFF_MAX_SIZE 50000
-
-/**
-
- Class for drawing the peak projections of spike waveforms.
-
-*/
-
-class ProjectionAxes: public GenericAxes
-{
-
- GLfloat pointColor[3];
- GLfloat gridColor[3];
-
- int ampBuffer[2][AMP_BUFF_MAX_SIZE];
- uint16_t buffIdx; // points to the most recent spike
- uint64_t totalSpikes;
-
-
- int ampDim1, ampDim2;
-
-
- void drawProjectionGrid(int thold, int gain);
- void calcWaveformPeakIdx(int, int, int*, int*);
-
- void createTexture();
- void createFBO();
-
- void drawSpikesToTexture(bool allSpikes);
- void drawTexturedQuad();
- void plotOldSpikes(bool allSpikes);
- void plotNewestSpike();
-
- bool newSpike;
-
-
- GLuint fboId; // Frame Buffer Object
- GLuint textureId; // Texture
- GLuint rboId; // Render Buffer
-
- int texWidth;
- int texHeight;
-
- bool clearOnNextDraw;
- bool isTextureValid;
- bool fboCreated;
- void clearTexture();
-
- void validateTexture();
-
- bool allSpikesNextRender;
-
-protected:
- void plot();
-
-
-public:
- ProjectionAxes();
- ProjectionAxes(int x, int y, double w, double h, int t);
- virtual ~ProjectionAxes() {}
-
- void setPosition(int, int, int, int);
- void updateSpikeData(SpikeObject s);
-
- void setPointColor(GLfloat r, GLfloat g, GLfloat b);
- void setGridColor(GLfloat, GLfloat, GLfloat);
-
- void clear();
- void invalidateTexture();
-
- void redraw();
-
- bool overlay;
- bool drawGrid;
- bool convertLabelUnits;
-
-
-};
-
-#endif // PROJECTION_AXES_H_
-
-
-
-
-// #endif
diff --git a/Source/Processors/Visualization/SpikePlotting/SimpleKeyEvent.h b/Source/Processors/Visualization/SpikePlotting/SimpleKeyEvent.h
deleted file mode 100755
index 4f7d34e3a278b01186f036c7e6f0e2729f0d481c..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/SimpleKeyEvent.h
+++ /dev/null
@@ -1,20 +0,0 @@
-#ifndef SIMPLE_KEY_EVENT_H
-#define SIMPLE_KEY_EVENT_H
-
-/**
-
- Struct containing keypress information not handled by JUCE.
-
-*/
-
-struct SimpleKeyEvent
-{
-
- int key;
- bool shift;
- bool ctrl;
- bool alt;
-
-};
-
-#endif
\ No newline at end of file
diff --git a/Source/Processors/Visualization/SpikePlotting/SpikePlot.cpp b/Source/Processors/Visualization/SpikePlotting/SpikePlot.cpp
deleted file mode 100755
index aa36bff72c8089a68118da1562dac8cd3c56314a..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/SpikePlot.cpp
+++ /dev/null
@@ -1,269 +0,0 @@
-#include "SpikePlot.h"
-#include "../SpikeObject.h"
-#include "PlotUtils.h"
-
-SpikePlot::SpikePlot():
- BaseUIElement(), limitsChanged(true), nChannels(0), plotType(0), nWaveAx(1), nProjAx(0)
-{
-
-}
-
-SpikePlot::SpikePlot(int x, int y, int w, int h, int p):
- BaseUIElement(x,y,w,h,0), limitsChanged(true), plotType(p)
-{
-
- switch (p)
- {
- case SINGLE_PLOT:
- std::cout<<"SpikePlot as SINGLE_PLOT"<<std::endl;
- nWaveAx = 1;
- nProjAx = 0;
- nChannels = 1;
- break;
- case STEREO_PLOT:
- std::cout<<"SpikePlot as STEREO_PLOT"<<std::endl;
- nWaveAx = 2;
- nProjAx = 1;
- nChannels = 2;
- break;
- case TETRODE_PLOT:
- std::cout<<"SpikePlot as TETRODE_PLOT"<<std::endl;
- nWaveAx = 4;
- nProjAx = 6;
- nChannels = 4;
- break;
- // case HIST_PLOT:
- // nWaveAx = 1;
- // nProjAx = 0;
- // nHistAx = 1;
- // break;
- default: // unsupported number of axes provided
- std::cout<<"SpikePlot as UNKNOWN, defaulting to SINGLE_PLOT"<<std::endl;
- nWaveAx = 1;
- nProjAx = 0;
- plotType = SINGLE_PLOT;
- nChannels = 1;
- }
-
-
-
- initAxes();
-}
-
-SpikePlot::~SpikePlot()
-{
-}
-
-// As a plot is a collection of axes simply have each axes can draw itself
-void SpikePlot::redraw()
-{
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].redraw();
- // wAxes[1].redraw();
- for (int i=0; i<nProjAx; i++)
- pAxes[i].redraw();
-}
-
-// Have each axes process the spike event
-void SpikePlot::processSpikeObject(SpikeObject s)
-{
- //std::cout<<"ElectrdePlot::processSpikeObject()"<<std::endl;
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].updateSpikeData(s);
- // wAxes[1].updateSpikeData(s);
- for (int i=0; i<nProjAx; i++)
- pAxes[i].updateSpikeData(s);
-}
-
-
-void SpikePlot::setEnabled(bool e)
-{
- BaseUIElement::enabled = e;
-
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].setEnabled(e);
- // wAxes[1].setEnabled(e);
- for (int i=0; i<nProjAx; i++)
- pAxes[i].setEnabled(e);
-}
-
-bool SpikePlot::getEnabled()
-{
- return BaseUIElement::enabled;
-}
-
-
-void SpikePlot::initAxes()
-{
- initLimits();
-
- for (int i=0; i<nWaveAx; i++)
- {
- wAxes[i] = WaveAxes(0, 0, 1, 1, WAVE1 + i); // add i to increment the wave channel
- wAxes[i].setWaveformColor(1.0, 1.0, 1.0);
- }
-
- for (int i=0; i<nProjAx; i++)
- {
- pAxes[i] = ProjectionAxes(0, 0, 1, 1, PROJ1x2 + i);
- pAxes[i].setPointColor(1.0, 1.0, 1.0);
- }
-
- updateAxesPositions(); // Set the position of the individual axes within the plot
- setLimitsOnAxes(); // initialize thel limits on the axes
-}
-void SpikePlot::updateAxesPositions()
-{
- int minX = BaseUIElement::xpos;
- int minY = BaseUIElement::ypos;
-
- double axesWidth;// = BaseUIElement::width/2;
- double axesHeight;// = BaseUIElement::height;
-
-
- // to compute the axes positions we need to know how many columns of proj and wave axes should exist
- // using these two values we can calculate the positions of all of the sub axes
- int nProjCols, nWaveCols;
- switch (plotType)
- {
- case SINGLE_PLOT:
- nProjCols = 0;
- nWaveCols = 1;
- axesWidth = width;
- axesHeight = height;
- break;
-
- case STEREO_PLOT:
- nProjCols = 1;
- nWaveCols = 2;
- axesWidth = width/2;
- axesHeight = height;
- break;
- case TETRODE_PLOT:
- nProjCols = 3;
- nWaveCols = 2;
- axesWidth = width/4;
- axesHeight = height/2;
- break;
- }
-
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].setPosition(minX + (i % nWaveCols) * axesWidth/nWaveCols, minY + (i/nWaveCols) * axesHeight, axesWidth/nWaveCols, axesHeight);
-
- for (int i=0; i<nProjAx; i++)
- pAxes[i].setPosition(minX + (1 + i%nProjCols) * axesWidth, minY + (i/nProjCols) * axesHeight, axesWidth, axesHeight);
-}
-
-void SpikePlot::setLimitsOnAxes()
-{
- std::cout<<"SpikePlot::setLimitsOnAxes()"<<std::endl;
-
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].setYLims(limits[i][0], limits[i][1]);
-
- // Each Projection sets its limits using the limits of the two waveform dims it represents.
- // Convert projection number to indecies, and then set the limits using those indices
- int j1, j2;
- for (int i=0; i<nProjAx; i++)
- {
- n2ProjIdx(pAxes[i].getType(), &j1, &j2);
- pAxes[i].setYLims(limits[j1][0], limits[j1][1]);
- pAxes[i].setXLims(limits[j2][0], limits[j2][1]);
- }
-}
-void SpikePlot::setPosition(int x, int y, double w, double h)
-{
-
- // std::cout<<"SpikePlot::setPosition()"<<std::endl;
- BaseUIElement::setPosition(x,y,w,h);
- updateAxesPositions();
-
-}
-
-
-void SpikePlot::initLimits()
-{
- for (int i=0; i<nChannels; i++)
- {
- limits[i][0] = 1209;//-1*pow(2,11);
- limits[i][1] = 11059;//pow(2,14)*1.6;
- }
-
-}
-
-void SpikePlot::getBestDimensions(int* w, int* h)
-{
- switch (plotType)
- {
- case TETRODE_PLOT:
- *w = 4;
- *h = 2;
- break;
- case STEREO_PLOT:
- *w = 2;
- *h = 1;
- break;
- case SINGLE_PLOT:
- *w = 1;
- *h = 1;
- break;
- default:
- *w = 1;
- *h = 1;
- break;
- }
-}
-
-void SpikePlot::clear()
-{
- std::cout<<"SpikePlot::clear()"<<std::endl;
- for (int i=0; i<nWaveAx; i++)
- wAxes[i].clear();
- for (int i=0; i<nProjAx; i++)
- pAxes[i].clear();
-}
-
-
-bool SpikePlot::processKeyEvent(SimpleKeyEvent k)
-{
-
- return true;
-}
-
-void SpikePlot::pan(int dim, bool up)
-{
-
- std::cout<<"SpikePlot::pan() dim:"<<dim<<std::endl;
-
- int mean = (limits[dim][0] + limits[dim][1])/2;
- int dLim = limits[dim][1] - mean;
-
- if (up)
- mean = mean + dLim/20;
- else
- mean = mean - dLim/20;
-
- limits[dim][0] = mean-dLim;
- limits[dim][1] = mean+dLim;
-
- setLimitsOnAxes();
-}
-void SpikePlot::zoom(int dim, bool in)
-{
- std::cout<<"SpikePlot::zoom()"<<std::endl;
-
- int mean = (limits[dim][0] + limits[dim][1])/2;
- int dLim = limits[dim][1] - mean;
-
- if (in)
- dLim = dLim * .90;
- else
- dLim = dLim / .90;
-
- limits[dim][0] = mean-dLim;
- limits[dim][1] = mean+dLim;
-
- setLimitsOnAxes();
-}
-
-
diff --git a/Source/Processors/Visualization/SpikePlotting/SpikePlot.h b/Source/Processors/Visualization/SpikePlotting/SpikePlot.h
deleted file mode 100755
index de78863de40218f8f8b71106d0683cd82f6b3c30..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/SpikePlot.h
+++ /dev/null
@@ -1,95 +0,0 @@
-#ifndef SPIKE_PLOT_H_
-#define SPIKE_PLOT_H_
-
-#if defined(__linux__)
-#include <GL/glut.h>
-#else
-#include <GLUT/glut.h>
-#endif
-#include <list>
-#include <math.h>
-
-#include "WaveAxes.h"
-#include "ProjectionAxes.h"
-#include "BaseUIElement.h"
-#include "PlotUtils.h"
-#include "SimpleKeyEvent.h"
-
-#define TETRODE_PLOT 1004
-#define STEREO_PLOT 1002
-#define SINGLE_PLOT 1001
-//#define HIST_PLOT 1000 // perhaps we'll use hist plots at a later date but not for now
-
-
-/**
-
- Class for drawing the waveforms and projections of incoming spikes.
-
-*/
-
-class SpikePlot : public BaseUIElement
-{
-
- bool enabled;
-
- bool limitsChanged;
-
- static const int MAX_N_CHAN = 4;
- static const int MAX_N_PROJ = 6;
-
- int nChannels;
- int plotType;
- int nWaveAx;
- int nProjAx;
-
- double limits[MAX_N_CHAN][2];
-
- WaveAxes wAxes[MAX_N_CHAN];
- ProjectionAxes pAxes[MAX_N_PROJ];
-
-
-
- // void zoomAxes(int n, bool xdim, int zoomval);
- // void zoomProjection (int n, bool xdim, int zoomval);
- // void zoomWaveform (int n, bool xdim, int zoomval);
-
- // void panAxes(int n, bool xdim, int panval);
- // void panProjection (int n, bool xdim, int panval);
- // void panWaveform(int n, bool xdim, int panval);
-
- void initLimits();
- void setLimitsOnAxes();
- void updateAxesPositions();
-
-
-public:
- SpikePlot();
- SpikePlot(int x, int y,int w,int h, int pType);
- virtual ~SpikePlot();
-
- void initAxes();
- void redraw();
-
- void setEnabled(bool enabled);
- bool getEnabled();
- void setPosition(int,int,double,double);
-
- void getBestDimensions(int*, int*);
-
- void mouseDown(int x, int y);
-
- void mouseDragX(int dx, bool shift, bool ctr);
- void mouseDragY(int dy, bool shift, bool ctr);
-
- bool processKeyEvent(SimpleKeyEvent k);
-
- void processSpikeObject(SpikeObject s);
-
- void clear();
- void zoom(int, bool);
- void pan(int, bool);
-};
-
-
-
-#endif
diff --git a/Source/Processors/Visualization/SpikePlotting/WaveAxes.cpp b/Source/Processors/Visualization/SpikePlotting/WaveAxes.cpp
deleted file mode 100755
index df776299ecf6cc29918c73d4ebc2ac3c4b7506d6..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/WaveAxes.cpp
+++ /dev/null
@@ -1,225 +0,0 @@
-#include "WaveAxes.h"
-
-WaveAxes::WaveAxes()
- : GenericAxes(),
- drawWaveformLine(true),
- drawWaveformPoints(false),
- overlay(false),
- drawGrid(true),
- convertLabelUnits(true)
-{
- GenericAxes::gotFirstSpike = false;
-
- ylims[0] = 0;
- ylims[1] = 1;
- setWaveformColor(1.0,1.0,0.6);
- setThresholdColor(1.0, 0.1, 0.1);
- setGridColor(0.4, 0.2, 0.2);
-}
-
-WaveAxes::WaveAxes(int x, int y, double w, double h, int t)
- : GenericAxes(x,y,w,h,t),
- drawWaveformLine(true),
- drawWaveformPoints(false),
- overlay(false),
- drawGrid(true),
- convertLabelUnits(true)
-{
- GenericAxes::gotFirstSpike = false;
-
- setWaveformColor(1.0,1.0,0.6);
- setThresholdColor(1.0, 0.1, 0.1);
- setGridColor(0.2, 0.2, 0.2);
-
-}
-
-void WaveAxes::updateSpikeData(SpikeObject newSpike)
-{
- //std::cout<<"WaveAxes::updateSpikeData()"<<std::endl;
- GenericAxes::updateSpikeData(newSpike);
-
-}
-
-void WaveAxes::redraw()
-{
-
- BaseUIElement::redraw();
-
- plot();
-
- BaseUIElement::drawElementEdges();
-}
-
-
-void WaveAxes::plot()
-{
-
- int chan = 0;
-
- // If no spikes have been received then don't plot anything
- if (!gotFirstSpike)
- {
- //std::cout<<"\tWaiting for the first spike"<<std::endl;
- return;
- }
-
- //setYLims(-20000,20000);
-
- // Set the plotting range for the current axes the xlims member is ignored as the xdims are 0->number of samples per waveform minus one
- // so the line goes all the way to the edges ydims are specified by the ylims vector
- setViewportRange(0, ylims[0], s.nSamples-1, ylims[1]);
- //setViewportRange(0, -2000, s.nSamples-1, 20000);
-
- //std::cout << "ylims set to " << ylims[0] << " " << ylims[1] << std::endl;
-
- // draw the grid lines for the waveforms?
- if (drawGrid)
- drawWaveformGrid(s.threshold[chan], s.gain[chan]);
-
-
- //std::cout << "ylims set to " << ylims[0] << " " << ylims[1] << std::endl;
-
- //compute the spatial width for each waveform sample
- float dx = 1;
- float x = 0;
-
- // type corresponds to channel so we need to calculate the starting
- // sample based upon which channel is getting plotted
- // type values are defined in PlotUtils.h
- int sampIdx = s.nSamples * type; //
- //std::cout<<"Starting with idx:"<<sampIdx<<std::endl;
-
-
- //Draw the individual waveform points connected with a line
- glColor3fv(waveColor);
- glLineWidth(2);
- glBegin(GL_LINE_STRIP);
-
- int dSamples = 1;
- for (int i = 0; i < s.nSamples; i++)
- {
- //std::cout<<"\t"<<s.data[sampIdx];
- glVertex2f(x, s.data[sampIdx] - 32768);
- sampIdx += dSamples;
- x +=dx;
- }
-
- glEnd();
-
-
- //Draw the threshold line and label
- glColor3fv(thresholdColor);
- glLineWidth(1);
- glLineStipple(4, 0xAAAA); // make a dashed line
- glEnable(GL_LINE_STIPPLE);
-
- glBegin(GL_LINE_STRIP);
- glVertex2f(0, s.threshold[chan]);
- glVertex2f(s.nSamples, s.threshold[chan]);
- glEnd();
-
- glDisable(GL_LINE_STIPPLE);
-
- char cstr[100] = {0};
-
- makeLabel(s.threshold[chan], s.gain[chan], convertLabelUnits, cstr);
- String str = String(cstr);
-
- float yOffset = (ylims[1] - ylims[0])/BaseUIElement::height * 2;
- drawString(1 ,s.threshold[chan] + yOffset, 15, str, font);
-}
-
-void WaveAxes::drawWaveformGrid(int thold, int gain)
-{
-
- //setYLims(-20000,20000);
-
- double voltRange = ylims[1] - ylims[0];
- double pixelRange = BaseUIElement::height;
- //This is a totally arbitrary value that seemed to lok the best for me
- int minPixelsPerTick = 25;
- int MAX_N_TICKS = 10;
-
- int nTicks = pixelRange / minPixelsPerTick;
- while (nTicks > MAX_N_TICKS)
- {
- minPixelsPerTick += 5;
- nTicks = pixelRange / minPixelsPerTick;
- }
-
- int voltPerTick = (voltRange / nTicks);
-
- glColor3fv(gridColor);
-
- glLineWidth(1);
- char cstr[200] = {0};
- String str;
-
- double tickVoltage = thold;
-
- // If the limits are bad we don't want to hang the program trying to draw too many ticks
- // so count the number of ticks drawn and kill the routine after 100 draws
- int tickCount=0;
- while (tickVoltage < ylims[1] - voltPerTick*1.5) // Draw the ticks above the thold line
- {
- tickVoltage = roundUp(tickVoltage + voltPerTick, 100);
-
- glBegin(GL_LINE_STRIP);
- glVertex2i(0, tickVoltage);
- glVertex2i(s.nSamples, tickVoltage);
- glEnd();
-
- makeLabel(tickVoltage, gain, convertLabelUnits, cstr);
- str = String(cstr);
- drawString(1, tickVoltage+voltPerTick/10, 15, str, font);
-
- if (tickCount++>100)
- return;
- }
-
- tickVoltage = thold;
- tickCount = 0;
-
- while (tickVoltage > ylims[0] + voltPerTick) // draw the ticks below the thold line
- {
- tickVoltage = roundUp(tickVoltage - voltPerTick, 100);
-
- glBegin(GL_LINE_STRIP);
- glVertex2i(0, tickVoltage);
- glVertex2i(s.nSamples, tickVoltage);
- glEnd();
-
- makeLabel(tickVoltage, gain, convertLabelUnits, cstr);
- str = String(cstr);
- drawString(1, tickVoltage+voltPerTick/10, 15, str, font);
-
- if (tickCount++>100)
- return;
- }
-
-
-}
-
-void WaveAxes::setWaveformColor(GLfloat r, GLfloat g, GLfloat b)
-{
- waveColor[0] = r;
- waveColor[1] = g;
- waveColor[2] = b;
-}
-void WaveAxes::setThresholdColor(GLfloat r, GLfloat g, GLfloat b)
-{
- thresholdColor[0] = r;
- thresholdColor[1] = g;
- thresholdColor[2] = b;
-}
-// void WaveAxes::setPointColor(GLfloat r, GLfloat g, GLfloat b){
-// pointColor[0] = r;
-// pointColor[1] = g;
-// pointColor[2] = b;
-// }
-void WaveAxes::setGridColor(GLfloat r, GLfloat g, GLfloat b)
-{
- gridColor[0] = r;
- gridColor[1] = g;
- gridColor[2] = b;
-}
diff --git a/Source/Processors/Visualization/SpikePlotting/WaveAxes.h b/Source/Processors/Visualization/SpikePlotting/WaveAxes.h
deleted file mode 100755
index 2d45d68738b211ebd3e1a2851e5d91ad7369d7b7..0000000000000000000000000000000000000000
--- a/Source/Processors/Visualization/SpikePlotting/WaveAxes.h
+++ /dev/null
@@ -1,58 +0,0 @@
-#ifndef WAVE_AXES_H
-#define WAVE_AXES_H
-
-#if defined(__linux__)
-#include <GL/glut.h>
-#else
-#include <GLUT/glut.h>
-#endif
-#include <stdlib.h>
-#include "BaseUIElement.h"
-#include "../SpikeObject.h"
-#include "PlotUtils.h"
-#include "GenericAxes.h"
-
-/**
-
- Class for drawing spike waveforms.
-
-*/
-
-class WaveAxes: public GenericAxes
-{
-
- GLfloat waveColor[3];
- GLfloat thresholdColor[3];
- GLfloat gridColor[3];
-
-
- void drawWaveformGrid(int thold, int gain);
-
-protected:
- void plot();
-
-
-public:
- WaveAxes();
- WaveAxes(int x, int y, double w, double h, int t);
- virtual ~WaveAxes() {}
-
- void updateSpikeData(SpikeObject s);
-
- void setWaveformColor(GLfloat r, GLfloat g, GLfloat b);
- void setThresholdColor(GLfloat r, GLfloat g, GLfloat b);
- void setGridColor(GLfloat, GLfloat, GLfloat);
-
- void redraw();
-
- bool drawWaveformLine;
- bool drawWaveformPoints;
- bool overlay;
- bool drawGrid;
- bool convertLabelUnits;
-
-};
-
-
-
-#endif
diff --git a/Source/Processors/Visualization/Visualizer.h b/Source/Processors/Visualization/Visualizer.h
index 0e23f3d2cfcb3af037fc5a808728ac1f2b5018b7..144dd73f0e8e78f8cf77b2da1ef9589a7ac1f285 100755
--- a/Source/Processors/Visualization/Visualizer.h
+++ b/Source/Processors/Visualization/Visualizer.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/WiFiOutput.cpp b/Source/Processors/WiFiOutput/WiFiOutput.cpp
similarity index 94%
rename from Source/Processors/WiFiOutput.cpp
rename to Source/Processors/WiFiOutput/WiFiOutput.cpp
index a3c5c9e0d32d4f6803b53e5456e39175933bb223..cf52d9091b5601fa19203942704b571b474ff1d0 100755
--- a/Source/Processors/WiFiOutput.cpp
+++ b/Source/Processors/WiFiOutput/WiFiOutput.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/WiFiOutput.h b/Source/Processors/WiFiOutput/WiFiOutput.h
similarity index 84%
rename from Source/Processors/WiFiOutput.h
rename to Source/Processors/WiFiOutput/WiFiOutput.h
index 1400de5aa08a2c9ef1b883743a3457ff2b282656..b2d35d436249bd967b18406c9c58341c6cf52cfe 100755
--- a/Source/Processors/WiFiOutput.h
+++ b/Source/Processors/WiFiOutput/WiFiOutput.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,11 +25,11 @@
#define __WIFIOUTPUT_H_94D625CE__
-#include "../../JuceLibraryCode/JuceHeader.h"
-#include "GenericProcessor.h"
-#include "Editors/WiFiOutputEditor.h"
+#include "../../../JuceLibraryCode/JuceHeader.h"
+#include "../GenericProcessor/GenericProcessor.h"
+#include "WiFiOutputEditor.h"
-#include "../Network/PracticalSocket.h" // For UDPSocket and SocketException
+#include "../../Network/PracticalSocket.h" // For UDPSocket and SocketException
/**
diff --git a/Source/Processors/Editors/WiFiOutputEditor.cpp b/Source/Processors/WiFiOutput/WiFiOutputEditor.cpp
similarity index 94%
rename from Source/Processors/Editors/WiFiOutputEditor.cpp
rename to Source/Processors/WiFiOutput/WiFiOutputEditor.cpp
index 5b8b679736f3dd4c3893431ba191d316c039ef45..65bc32d3d7fa0b8c79f0bc44e9d061a0524ef5d4 100755
--- a/Source/Processors/Editors/WiFiOutputEditor.cpp
+++ b/Source/Processors/WiFiOutput/WiFiOutputEditor.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/Processors/Editors/WiFiOutputEditor.h b/Source/Processors/WiFiOutput/WiFiOutputEditor.h
similarity index 89%
rename from Source/Processors/Editors/WiFiOutputEditor.h
rename to Source/Processors/WiFiOutput/WiFiOutputEditor.h
index d31e613ac29ece80352a3cb747acb74ca9dfb171..c004aa543c994a21aadf1c475d1054d2645b2133 100755
--- a/Source/Processors/Editors/WiFiOutputEditor.h
+++ b/Source/Processors/WiFiOutput/WiFiOutputEditor.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,8 +25,8 @@
#define __WIFIOUTPUTEDITOR_H_7161DB44__
#include "../../../JuceLibraryCode/JuceHeader.h"
-#include "GenericEditor.h"
-#include "ImageIcon.h"
+#include "../Editors/GenericEditor.h"
+#include "../Editors/ImageIcon.h"
class ImageIcon;
diff --git a/Source/UI/ControlPanel.cpp b/Source/UI/ControlPanel.cpp
index 5034b7d898d4ce13e6aa1bb32ba98e905cb78881..466bdc799d3bf4305b0b8406b82fcf72ce20da86 100755
--- a/Source/UI/ControlPanel.cpp
+++ b/Source/UI/ControlPanel.cpp
@@ -1,23 +1,23 @@
/*
- ------------------------------------------------------------------
+------------------------------------------------------------------
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+This file is part of the Open Ephys GUI
+Copyright (C) 2014 Open Ephys
- ------------------------------------------------------------------
+------------------------------------------------------------------
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+You should have received a copy of the GNU General Public License
+along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
@@ -25,6 +25,7 @@
#include "UIComponent.h"
#include <stdio.h>
#include <math.h>
+#include "../Processors/RecordNode/RecordEngine.h"
PlayButton::PlayButton()
: DrawableButton("PlayButton", DrawableButton::ImageFitted)
@@ -363,7 +364,7 @@ void ControlPanelButton::setState(bool b)
ControlPanel::ControlPanel(ProcessorGraph* graph_, AudioComponent* audio_)
- : graph(graph_), audio(audio_), initialize(true), open(false)
+ : graph(graph_), audio(audio_), initialize(true), open(false), lastEngineIndex(-1)
{
if (1)
@@ -400,6 +401,22 @@ ControlPanel::ControlPanel(ProcessorGraph* graph_, AudioComponent* audio_)
cpb = new ControlPanelButton(this);
addAndMakeVisible(cpb);
+ recordSelector = new ComboBox();
+ recordSelector->addListener(this);
+ for (int i =0; i < RecordEngineManager::getNumOfBuiltInEngines(); i++)
+ {
+ RecordEngineManager* rem = RecordEngineManager::createBuiltInEngineManager(i);
+ recordSelector->addItem(rem->getName(),i+1);
+ recordEngines.add(rem);
+ }
+ addChildComponent(recordSelector);
+
+ recordOptionsButton = new UtilityButton("R",Font("Small Text", 15, Font::plain));
+ recordOptionsButton->setEnabledState(true);
+ recordOptionsButton->addListener(this);
+ recordOptionsButton->setTooltip("Configure options for selected record engine");
+ addChildComponent(recordOptionsButton);
+
newDirectoryButton = new UtilityButton("+", Font("Small Text", 15, Font::plain));
newDirectoryButton->setEnabledState(false);
newDirectoryButton->addListener(this);
@@ -476,14 +493,19 @@ void ControlPanel::updateChildComponents()
filenameComponent->addListener(getProcessorGraph()->getRecordNode());
getProcessorGraph()->getRecordNode()->filenameComponentChanged(filenameComponent);
+ recordSelector->setSelectedId(1,sendNotificationSync);
}
void ControlPanel::createPaths()
{
- int w = getWidth() - 325;
+ /* int w = getWidth() - 325;
if (w > 150)
- w = 150;
+ w = 150;*/
+
+ int w = getWidth() - 435;
+ if (w > 22)
+ w = 22;
int h1 = getHeight()-32;
int h2 = getHeight();
@@ -607,6 +629,12 @@ void ControlPanel::resized()
{
int topBound = getHeight()-h+10-5;
+ recordSelector->setBounds((w - 435) > 40 ? 35 : w-450, topBound, 100, h-10);
+ recordSelector->setVisible(true);
+
+ recordOptionsButton->setBounds((w - 435) > 40 ? 140 : w-350,topBound, h-10, h-10);
+ recordOptionsButton->setVisible(true);
+
filenameComponent->setBounds(165, topBound, w-500, h-10);
filenameComponent->setVisible(true);
@@ -630,6 +658,8 @@ void ControlPanel::resized()
prependText->setVisible(false);
dateText->setVisible(false);
appendText->setVisible(false);
+ recordSelector->setVisible(false);
+ recordOptionsButton->setVisible(false);
}
repaint();
@@ -708,6 +738,9 @@ void ControlPanel::buttonClicked(Button* button)
if (graph->enableProcessors()) // start the processor graph
{
+ if (recordEngines[recordSelector->getSelectedId()-1]->isWindowOpen())
+ recordEngines[recordSelector->getSelectedId()-1]->toggleConfigWindow();
+
audio->beginCallbacks();
masterClock->start();
audioEditor->disable();
@@ -716,6 +749,8 @@ void ControlPanel::buttonClicked(Button* button)
startTimer(250); // refresh every 250 ms
}
+ recordSelector->setEnabled(false);
+ recordOptionsButton->setEnabled(false);
}
else
{
@@ -732,6 +767,8 @@ void ControlPanel::buttonClicked(Button* button)
stopTimer();
startTimer(60000); // back to refresh every minute
audioEditor->enable();
+ recordSelector->setEnabled(true);
+ recordOptionsButton->setEnabled(true);
}
@@ -750,6 +787,9 @@ void ControlPanel::buttonClicked(Button* button)
{
if (graph->enableProcessors()) // start the processor graph
{
+ if (recordEngines[recordSelector->getSelectedId()-1]->isWindowOpen())
+ recordEngines[recordSelector->getSelectedId()-1]->toggleConfigWindow();
+
audio->beginCallbacks();
masterClock->start();
audioEditor->disable();
@@ -760,6 +800,8 @@ void ControlPanel::buttonClicked(Button* button)
startRecording();
playButton->setToggleState(true, dontSendNotification);
+ recordSelector->setEnabled(false);
+ recordOptionsButton->setEnabled(false);
}
}
@@ -770,6 +812,45 @@ void ControlPanel::buttonClicked(Button* button)
}
}
+ if (button == recordOptionsButton)
+ {
+ int id = recordSelector->getSelectedId()-1;
+ if (id < 0) return;
+
+ recordEngines[id]->toggleConfigWindow();
+ }
+
+}
+
+void ControlPanel::comboBoxChanged(ComboBox* combo)
+{
+ if (lastEngineIndex >= 0)
+ {
+ if (recordEngines[lastEngineIndex]->isWindowOpen())
+ recordEngines[lastEngineIndex]->toggleConfigWindow();
+ }
+ RecordEngine* re;
+ getProcessorGraph()->getRecordNode()->clearRecordEngines();
+ if (combo->getSelectedId() > 0)
+ {
+ re = recordEngines[combo->getSelectedId()-1]->instantiateEngine();
+ }
+ else
+ {
+ std::cout << "Engine ComboBox: Bad ID" << std::endl;
+ combo->setSelectedId(1,dontSendNotification);
+ re = recordEngines[0]->instantiateEngine();
+ }
+ re->setUIComponent(getUIComponent());
+ re->registerManager(recordEngines[combo->getSelectedId()-1]);
+ getProcessorGraph()->getRecordNode()->registerRecordEngine(re);
+
+ graph->getRecordNode()->newDirectoryNeeded = true;
+ newDirectoryButton->setEnabledState(false);
+ masterClock->resetRecordTime();
+
+ dateText->setColour(Label::textColourId, Colours::grey);
+ lastEngineIndex=combo->getSelectedId()-1;
}
void ControlPanel::disableCallbacks()
@@ -792,10 +873,10 @@ void ControlPanel::disableCallbacks()
playButton->setToggleState(false, dontSendNotification);
recordButton->setToggleState(false, dontSendNotification);
+ recordSelector->setEnabled(true);
masterClock->stopRecording();
masterClock->stop();
-
}
// void ControlPanel::actionListenerCallback(const String & msg)
@@ -903,9 +984,19 @@ void ControlPanel::saveStateToXml(XmlElement* xml)
controlPanelState->setAttribute("isOpen",open);
controlPanelState->setAttribute("prependText",prependText->getText());
controlPanelState->setAttribute("appendText",appendText->getText());
+ controlPanelState->setAttribute("recordEngine",recordSelector->getSelectedId());
audioEditor->saveStateToXml(xml);
+ XmlElement* recordEnginesState = xml->createNewChildElement("RECORDENGINES");
+ for (int i=0; i < recordEngines.size(); i++)
+ {
+ XmlElement* reState = recordEnginesState->createNewChildElement("ENGINE");
+ reState->setAttribute("id",recordEngines[i]->getID());
+ reState->setAttribute("name",recordEngines[i]->getName());
+ recordEngines[i]->saveParametersToXml(reState);
+ }
+
}
void ControlPanel::loadStateFromXml(XmlElement* xml)
@@ -918,11 +1009,23 @@ void ControlPanel::loadStateFromXml(XmlElement* xml)
appendText->setText(xmlNode->getStringAttribute("appendText", ""), dontSendNotification);
prependText->setText(xmlNode->getStringAttribute("prependText", ""), dontSendNotification);
+ recordSelector->setSelectedId(xmlNode->getIntAttribute("recordEngine",1), sendNotificationSync);
bool isOpen = xmlNode->getBoolAttribute("isOpen");
openState(isOpen);
}
+ else if (xmlNode->hasTagName("RECORDENGINES"))
+ {
+ for (int i = 0; i < recordEngines.size(); i++)
+ {
+ forEachXmlChildElementWithTagName(*xmlNode,xmlEngine,"ENGINE")
+ {
+ if (xmlEngine->getStringAttribute("id") == recordEngines[i]->getID())
+ recordEngines[i]->loadParametersFromXml(xmlEngine);
+ }
+ }
+ }
}
audioEditor->loadStateFromXml(xml);
diff --git a/Source/UI/ControlPanel.h b/Source/UI/ControlPanel.h
index 2e623282d7742f1a6255c25fedc2f4fa58c3ec5f..9ac30aef6580471fc41922b4d2ff472971547959 100755
--- a/Source/UI/ControlPanel.h
+++ b/Source/UI/ControlPanel.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -26,9 +26,9 @@
#include "../../JuceLibraryCode/JuceHeader.h"
#include "../Audio/AudioComponent.h"
-#include "../Processors/Editors/AudioEditor.h"
-#include "../Processors/ProcessorGraph.h"
-#include "../Processors/RecordNode.h"
+#include "../Processors/AudioNode/AudioEditor.h"
+#include "../Processors/ProcessorGraph/ProcessorGraph.h"
+#include "../Processors/RecordNode/RecordNode.h"
#include "CustomLookAndFeel.h"
#include "../AccessClass.h"
#include "../Processors/Editors/GenericEditor.h" // for UtilityButton
@@ -163,8 +163,6 @@ private:
The Clock uses built-in JUCE functions for getting the system time. It does not
currently interact with timestamps from ProcessorGraph sources.
- The Clock draws the time using OpenGL (and the FTGL font library).
-
@see ControlPanel
*/
@@ -277,7 +275,8 @@ class ControlPanel : public Component,
public Button::Listener,
public Timer,
public AccessClass,
- public Label::Listener
+ public Label::Listener,
+ public ComboBox::Listener
{
public:
@@ -352,6 +351,8 @@ private:
ScopedPointer<UtilityButton> newDirectoryButton;
ScopedPointer<ControlPanelButton> cpb;
+ ScopedPointer<ComboBox> recordSelector;
+
ScopedPointer<Label> prependText;
ScopedPointer<Label> dateText;
ScopedPointer<Label> appendText;
@@ -366,6 +367,8 @@ private:
void buttonClicked(Button* button);
+ void comboBoxChanged(ComboBox* combo);
+
bool initialize;
/** Adds the RecordNode as a listener of the FilenameComponent
@@ -391,6 +394,10 @@ private:
Colour backgroundColour;
+ OwnedArray<RecordEngineManager> recordEngines;
+ ScopedPointer<UtilityButton> recordOptionsButton;
+ int lastEngineIndex;
+
};
diff --git a/Source/UI/CustomLookAndFeel.cpp b/Source/UI/CustomLookAndFeel.cpp
index d193f87a9d1dcf2840093fd8411aa3236c8352ff..77c02117b46d85a58e170e270672c4fbc75c5c90 100755
--- a/Source/UI/CustomLookAndFeel.cpp
+++ b/Source/UI/CustomLookAndFeel.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/CustomLookAndFeel.h b/Source/UI/CustomLookAndFeel.h
index e6107fe01982f0d6f5a1a74e8f753f272d445cd5..35b708ceb051db233848f05c9718573a0e2b1754 100755
--- a/Source/UI/CustomLookAndFeel.h
+++ b/Source/UI/CustomLookAndFeel.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/DataViewport.cpp b/Source/UI/DataViewport.cpp
index d0b0331af8a8d690dfe8f3c74b64c63e1a693d02..f97a3849aec6c44c5734680248d45d36af8d21a1 100755
--- a/Source/UI/DataViewport.cpp
+++ b/Source/UI/DataViewport.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -27,7 +27,7 @@
DataViewport::DataViewport() :
TabbedComponent(TabbedButtonBar::TabsAtRight),
- tabDepth(32), shutdown(false), tabIndex(0)
+ tabDepth(32), tabIndex(0), shutdown(false)
{
tabArray.clear();
@@ -74,7 +74,7 @@ int DataViewport::addTabToDataViewport(String name, Component* component, Generi
editorArray.add(editor);
- // std::cout << "Adding tab with index " << tabIndex << std::endl;
+ std::cout << "Adding tab with index " << tabIndex << std::endl;
setCurrentTabIndex(tabArray.size()-1);
@@ -97,8 +97,8 @@ void DataViewport::destroyTab(int index)
int newIndex = tabArray.indexOf(index);
tabArray.remove(newIndex);
- editorArray.remove(newIndex);
-
+ editorArray.remove(newIndex); // do this after the editor has been refreshed
+
removeTab(newIndex);
if (tabArray.size() == 0)
@@ -116,18 +116,12 @@ void DataViewport::disableConnectionToEditorViewport()
void DataViewport::currentTabChanged(int newIndex, const String& newTabName)
{
- // OpenGLCanvas* canvas = (OpenGLCanvas*) getTabContentComponent(newIndex);
-
- // if (canvas != 0) {
- // canvas->refreshState();
- // }
-
// std::cout << "CURRENT TAB CHANGED" << std::endl;
//std::cout << "number of editors remaining: " << editorArray.size() << std::endl;
if (!shutdown)
{
- getEditorViewport()->makeEditorVisible(editorArray[newIndex]);
+ //getEditorViewport()->makeEditorVisible(editorArray[newIndex]);
getTopLevelComponent()->repaint();
}
}
diff --git a/Source/UI/DataViewport.h b/Source/UI/DataViewport.h
index dfb5e44171dc1091cdafe07e8d1159e52996a0c6..8e73a2523c35ec41e46239417dfe02c8f36af4e9 100755
--- a/Source/UI/DataViewport.h
+++ b/Source/UI/DataViewport.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/EcubeDialogComponent.cpp b/Source/UI/EcubeDialogComponent.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..8db0f41bcd338314cd6a8cfea3b2e4c2e9884d84
--- /dev/null
+++ b/Source/UI/EcubeDialogComponent.cpp
@@ -0,0 +1,419 @@
+/*
+ ==============================================================================
+
+ This is an automatically generated GUI class created by the Introjucer!
+
+ Be careful when adding custom code to these files, as only the code within
+ the "//[xyz]" and "//[/xyz]" sections will be retained when the file is loaded
+ and re-saved.
+
+ Created with Introjucer version: 3.1.0
+
+ ------------------------------------------------------------------------------
+
+ The Introjucer is part of the JUCE library - "Jules' Utility Class Extensions"
+ Copyright 2004-13 by Raw Material Software Ltd.
+
+ ==============================================================================
+*/
+
+//[Headers] You can add your own extra header files here...
+//[/Headers]
+
+#include "EcubeDialogComponent.h"
+
+
+//[MiscUserDefs] You can add your own user definitions and misc code here...
+//[/MiscUserDefs]
+
+//==============================================================================
+EcubeDialogComponent::EcubeDialogComponent ()
+{
+ addAndMakeVisible (laAddressLabel = new Label ("Address Label",
+ TRANS("Network Address:")));
+ laAddressLabel->setFont (Font (15.00f, Font::plain));
+ laAddressLabel->setJustificationType (Justification::centredLeft);
+ laAddressLabel->setEditable (false, false, false);
+ laAddressLabel->setColour (TextEditor::textColourId, Colours::black);
+ laAddressLabel->setColour (TextEditor::backgroundColourId, Colour (0x00000000));
+
+ addAndMakeVisible (bnOK = new TextButton ("OK button"));
+ bnOK->setButtonText (TRANS("Connect"));
+ bnOK->addListener (this);
+
+ addAndMakeVisible (bnCancel = new TextButton ("Cancel Button"));
+ bnCancel->setButtonText (TRANS("Cancel"));
+ bnCancel->addListener (this);
+
+ addAndMakeVisible (comboModule = new ComboBox ("Module selection combobox"));
+ comboModule->setTooltip (TRANS("Choose eCube module"));
+ comboModule->setEditableText (false);
+ comboModule->setJustificationType (Justification::centredLeft);
+ comboModule->setTextWhenNothingSelected (String::empty);
+ comboModule->setTextWhenNoChoicesAvailable (TRANS("(no choices)"));
+ comboModule->addItem (TRANS("Headstage(s)"), 1);
+ comboModule->addItem (TRANS("Panel Analog Input"), 2);
+ comboModule->addItem (TRANS("Panel Digital Input"), 3);
+ comboModule->addListener (this);
+
+ addAndMakeVisible (labelModule = new Label ("Module selection label",
+ TRANS("Module")));
+ labelModule->setFont (Font (15.00f, Font::plain));
+ labelModule->setJustificationType (Justification::centredLeft);
+ labelModule->setEditable (false, false, false);
+ labelModule->setColour (TextEditor::textColourId, Colours::black);
+ labelModule->setColour (TextEditor::backgroundColourId, Colour (0x00000000));
+
+ addAndMakeVisible (cbNetworkAddress = new ComboBox ("Network Address ComboBox"));
+ cbNetworkAddress->setEditableText (true);
+ cbNetworkAddress->setJustificationType (Justification::centredLeft);
+ cbNetworkAddress->setTextWhenNothingSelected (String::empty);
+ cbNetworkAddress->setTextWhenNoChoicesAvailable (TRANS("(no choices)"));
+ cbNetworkAddress->addListener (this);
+
+ addAndMakeVisible (groupComponent = new GroupComponent ("headstage group",
+ TRANS("Headstage selection")));
+
+ addAndMakeVisible (toggleHeadstage1 = new ToggleButton ("Headstage1 button"));
+ toggleHeadstage1->setButtonText (TRANS("Headstage 1"));
+ toggleHeadstage1->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage2 = new ToggleButton ("Headstage2 button"));
+ toggleHeadstage2->setButtonText (TRANS("Headstage 2"));
+ toggleHeadstage2->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage3 = new ToggleButton ("Headstage3 button"));
+ toggleHeadstage3->setButtonText (TRANS("Headstage 3"));
+ toggleHeadstage3->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage4 = new ToggleButton ("Headstage4 button"));
+ toggleHeadstage4->setButtonText (TRANS("Headstage 4"));
+ toggleHeadstage4->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage5 = new ToggleButton ("Headstage5 button"));
+ toggleHeadstage5->setButtonText (TRANS("Headstage 5"));
+ toggleHeadstage5->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage6 = new ToggleButton ("Headstage6 button"));
+ toggleHeadstage6->setButtonText (TRANS("Headstage 6"));
+ toggleHeadstage6->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage7 = new ToggleButton ("Headstage7 button"));
+ toggleHeadstage7->setButtonText (TRANS("Headstage 7"));
+ toggleHeadstage7->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage8 = new ToggleButton ("Headstage8 button"));
+ toggleHeadstage8->setButtonText (TRANS("Headstage 8"));
+ toggleHeadstage8->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage9 = new ToggleButton ("Headstage9 button"));
+ toggleHeadstage9->setButtonText (TRANS("Headstage 9"));
+ toggleHeadstage9->addListener (this);
+
+ addAndMakeVisible (toggleHeadstage10 = new ToggleButton ("Headstage10 button"));
+ toggleHeadstage10->setButtonText (TRANS("Headstage 10"));
+ toggleHeadstage10->addListener (this);
+ toggleHeadstage10->setToggleState (true, dontSendNotification);
+
+
+ //[UserPreSize]
+ //[/UserPreSize]
+
+ setSize (310, 320);
+
+
+ //[Constructor] You can add your own custom stuff here..
+ //[/Constructor]
+}
+
+EcubeDialogComponent::~EcubeDialogComponent()
+{
+ //[Destructor_pre]. You can add your own custom destruction code here..
+ //[/Destructor_pre]
+
+ laAddressLabel = nullptr;
+ bnOK = nullptr;
+ bnCancel = nullptr;
+ comboModule = nullptr;
+ labelModule = nullptr;
+ cbNetworkAddress = nullptr;
+ groupComponent = nullptr;
+ toggleHeadstage1 = nullptr;
+ toggleHeadstage2 = nullptr;
+ toggleHeadstage3 = nullptr;
+ toggleHeadstage4 = nullptr;
+ toggleHeadstage5 = nullptr;
+ toggleHeadstage6 = nullptr;
+ toggleHeadstage7 = nullptr;
+ toggleHeadstage8 = nullptr;
+ toggleHeadstage9 = nullptr;
+ toggleHeadstage10 = nullptr;
+
+
+ //[Destructor]. You can add your own custom destruction code here..
+ //[/Destructor]
+}
+
+//==============================================================================
+void EcubeDialogComponent::paint (Graphics& g)
+{
+ //[UserPrePaint] Add your own custom painting code here..
+ //[/UserPrePaint]
+
+ g.fillAll (Colours::white);
+
+ //[UserPaint] Add your own custom painting code here..
+ //[/UserPaint]
+}
+
+void EcubeDialogComponent::resized()
+{
+ laAddressLabel->setBounds (16, 8, 150, 24);
+ bnOK->setBounds (24, 280, 112, 24);
+ bnCancel->setBounds (160, 280, 87, 24);
+ comboModule->setBounds (80, 72, 192, 24);
+ labelModule->setBounds (16, 72, 72, 24);
+ cbNetworkAddress->setBounds (24, 40, 248, 24);
+ groupComponent->setBounds (8, 104, 288, 160);
+ toggleHeadstage1->setBounds (24, 128, 112, 24);
+ toggleHeadstage2->setBounds (24, 152, 112, 24);
+ toggleHeadstage3->setBounds (24, 176, 112, 24);
+ toggleHeadstage4->setBounds (24, 200, 112, 24);
+ toggleHeadstage5->setBounds (24, 224, 112, 24);
+ toggleHeadstage6->setBounds (160, 128, 112, 24);
+ toggleHeadstage7->setBounds (160, 152, 112, 24);
+ toggleHeadstage8->setBounds (160, 176, 112, 24);
+ toggleHeadstage9->setBounds (160, 200, 112, 24);
+ toggleHeadstage10->setBounds (160, 224, 112, 24);
+ //[UserResized] Add your own custom resize handling here..
+ //[/UserResized]
+}
+
+void EcubeDialogComponent::buttonClicked (Button* buttonThatWasClicked)
+{
+ //[UserbuttonClicked_Pre]
+ //[/UserbuttonClicked_Pre]
+
+ if (buttonThatWasClicked == bnOK)
+ {
+ //[UserButtonCode_bnOK] -- add your button handler code here..
+ DialogWindow* dw = findParentComponentOfClass<DialogWindow>();
+ if (dw != nullptr)
+ {
+ dw->exitModalState(1);
+ }
+ //[/UserButtonCode_bnOK]
+ }
+ else if (buttonThatWasClicked == bnCancel)
+ {
+ //[UserButtonCode_bnCancel] -- add your button handler code here..
+ DialogWindow* dw = findParentComponentOfClass<DialogWindow>();
+ if (dw != nullptr)
+ {
+ dw->exitModalState(0);
+ }
+ //[/UserButtonCode_bnCancel]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage1)
+ {
+ //[UserButtonCode_toggleHeadstage1] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage1]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage2)
+ {
+ //[UserButtonCode_toggleHeadstage2] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage2]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage3)
+ {
+ //[UserButtonCode_toggleHeadstage3] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage3]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage4)
+ {
+ //[UserButtonCode_toggleHeadstage4] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage4]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage5)
+ {
+ //[UserButtonCode_toggleHeadstage5] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage5]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage6)
+ {
+ //[UserButtonCode_toggleHeadstage6] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage6]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage7)
+ {
+ //[UserButtonCode_toggleHeadstage7] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage7]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage8)
+ {
+ //[UserButtonCode_toggleHeadstage8] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage8]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage9)
+ {
+ //[UserButtonCode_toggleHeadstage9] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage9]
+ }
+ else if (buttonThatWasClicked == toggleHeadstage10)
+ {
+ //[UserButtonCode_toggleHeadstage10] -- add your button handler code here..
+ //[/UserButtonCode_toggleHeadstage10]
+ }
+
+ //[UserbuttonClicked_Post]
+ //[/UserbuttonClicked_Post]
+}
+
+void EcubeDialogComponent::comboBoxChanged (ComboBox* comboBoxThatHasChanged)
+{
+ //[UsercomboBoxChanged_Pre]
+ //[/UsercomboBoxChanged_Pre]
+
+ if (comboBoxThatHasChanged == comboModule)
+ {
+ //[UserComboBoxCode_comboModule] -- add your combo box handling code here..
+ //[/UserComboBoxCode_comboModule]
+ }
+ else if (comboBoxThatHasChanged == cbNetworkAddress)
+ {
+ //[UserComboBoxCode_cbNetworkAddress] -- add your combo box handling code here..
+ //[/UserComboBoxCode_cbNetworkAddress]
+ }
+
+ //[UsercomboBoxChanged_Post]
+ //[/UsercomboBoxChanged_Post]
+}
+
+
+
+//[MiscUserCode] You can add your own definitions of your custom methods or any other code here...
+String EcubeDialogComponent::GetAddressValue()
+{
+ return cbNetworkAddress->getText();
+}
+
+String EcubeDialogComponent::GetModuleName()
+{
+ return comboModule->getText();
+}
+
+void EcubeDialogComponent::SetDeviceNames(const StringArray& names)
+{
+ for (int i = 0; i < names.size(); i++)
+ {
+ cbNetworkAddress->addItem(names[i], i+1);
+ }
+}
+
+void EcubeDialogComponent::GetHeadstageSelection(bool hs[10])
+{
+ for (int i = 0; i < 10; i++)
+ hs[i] = false;
+ if (toggleHeadstage1->getToggleState())
+ hs[0] = true;
+ if (toggleHeadstage2->getToggleState())
+ hs[1] = true;
+ if (toggleHeadstage3->getToggleState())
+ hs[2] = true;
+ if (toggleHeadstage4->getToggleState())
+ hs[3] = true;
+ if (toggleHeadstage5->getToggleState())
+ hs[4] = true;
+ if (toggleHeadstage6->getToggleState())
+ hs[5] = true;
+ if (toggleHeadstage7->getToggleState())
+ hs[6] = true;
+ if (toggleHeadstage8->getToggleState())
+ hs[7] = true;
+ if (toggleHeadstage9->getToggleState())
+ hs[8] = true;
+ if (toggleHeadstage10->getToggleState())
+ hs[9] = true;
+}
+
+//[/MiscUserCode]
+
+
+//==============================================================================
+#if 0
+/* -- Introjucer information section --
+
+ This is where the Introjucer stores the metadata that describe this GUI layout, so
+ make changes in here at your peril!
+
+BEGIN_JUCER_METADATA
+
+<JUCER_COMPONENT documentType="Component" className="EcubeDialogComponent" componentName=""
+ parentClasses="public Component" constructorParams="" variableInitialisers=""
+ snapPixels="8" snapActive="1" snapShown="1" overlayOpacity="0.330"
+ fixedSize="0" initialWidth="310" initialHeight="320">
+ <BACKGROUND backgroundColour="ffffffff"/>
+ <LABEL name="Address Label" id="598e4f972ee19e11" memberName="laAddressLabel"
+ virtualName="" explicitFocusOrder="0" pos="16 8 150 24" edTextCol="ff000000"
+ edBkgCol="0" labelText="Network Address:" editableSingleClick="0"
+ editableDoubleClick="0" focusDiscardsChanges="0" fontname="Default font"
+ fontsize="15" bold="0" italic="0" justification="33"/>
+ <TEXTBUTTON name="OK button" id="d46371ace0e2731f" memberName="bnOK" virtualName=""
+ explicitFocusOrder="0" pos="24 280 112 24" buttonText="Connect"
+ connectedEdges="0" needsCallback="1" radioGroupId="0"/>
+ <TEXTBUTTON name="Cancel Button" id="e57f56c355a79a42" memberName="bnCancel"
+ virtualName="" explicitFocusOrder="0" pos="160 280 87 24" buttonText="Cancel"
+ connectedEdges="0" needsCallback="1" radioGroupId="0"/>
+ <COMBOBOX name="Module selection combobox" id="937bd3c2684c1901" memberName="comboModule"
+ virtualName="" explicitFocusOrder="0" pos="80 72 192 24" tooltip="Choose eCube module"
+ editable="0" layout="33" items="Headstage(s) Panel Analog Input Panel Digital Input"
+ textWhenNonSelected="" textWhenNoItems="(no choices)"/>
+ <LABEL name="Module selection label" id="8db8f9471da84061" memberName="labelModule"
+ virtualName="" explicitFocusOrder="0" pos="16 72 72 24" edTextCol="ff000000"
+ edBkgCol="0" labelText="Module" editableSingleClick="0" editableDoubleClick="0"
+ focusDiscardsChanges="0" fontname="Default font" fontsize="15"
+ bold="0" italic="0" justification="33"/>
+ <COMBOBOX name="Network Address ComboBox" id="40e24a76fea3653c" memberName="cbNetworkAddress"
+ virtualName="" explicitFocusOrder="0" pos="24 40 248 24" editable="1"
+ layout="33" items="" textWhenNonSelected="" textWhenNoItems="(no choices)"/>
+ <GROUPCOMPONENT name="headstage group" id="8dee2bbe073f0f63" memberName="groupComponent"
+ virtualName="" explicitFocusOrder="0" pos="8 104 288 160" title="Headstage selection"/>
+ <TOGGLEBUTTON name="Headstage1 button" id="c735dad1514586" memberName="toggleHeadstage1"
+ virtualName="" explicitFocusOrder="0" pos="24 128 112 24" buttonText="Headstage 1"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage2 button" id="24f215ce96874781" memberName="toggleHeadstage2"
+ virtualName="" explicitFocusOrder="0" pos="24 152 112 24" buttonText="Headstage 2"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage3 button" id="f035e57b5cc87d27" memberName="toggleHeadstage3"
+ virtualName="" explicitFocusOrder="0" pos="24 176 112 24" buttonText="Headstage 3"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage4 button" id="6abc75f398861c5f" memberName="toggleHeadstage4"
+ virtualName="" explicitFocusOrder="0" pos="24 200 112 24" buttonText="Headstage 4"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage5 button" id="3c5bb9c9db62f1bb" memberName="toggleHeadstage5"
+ virtualName="" explicitFocusOrder="0" pos="24 224 112 24" buttonText="Headstage 5"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage6 button" id="306515c3b3ea7522" memberName="toggleHeadstage6"
+ virtualName="" explicitFocusOrder="0" pos="160 128 112 24" buttonText="Headstage 6"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage7 button" id="704c88cd419204b0" memberName="toggleHeadstage7"
+ virtualName="" explicitFocusOrder="0" pos="160 152 112 24" buttonText="Headstage 7"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage8 button" id="ba85df2f98d869d9" memberName="toggleHeadstage8"
+ virtualName="" explicitFocusOrder="0" pos="160 176 112 24" buttonText="Headstage 8"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage9 button" id="16256502b9f60cd4" memberName="toggleHeadstage9"
+ virtualName="" explicitFocusOrder="0" pos="160 200 112 24" buttonText="Headstage 9"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="0"/>
+ <TOGGLEBUTTON name="Headstage10 button" id="fab4cbe0a6d27a36" memberName="toggleHeadstage10"
+ virtualName="" explicitFocusOrder="0" pos="160 224 112 24" buttonText="Headstage 10"
+ connectedEdges="0" needsCallback="1" radioGroupId="0" state="1"/>
+</JUCER_COMPONENT>
+
+END_JUCER_METADATA
+*/
+#endif
+
+
+//[EndFile] You can add extra defines here...
+//[/EndFile]
diff --git a/Source/UI/EcubeDialogComponent.h b/Source/UI/EcubeDialogComponent.h
new file mode 100644
index 0000000000000000000000000000000000000000..2f2da1addbd43d822d87bebfcc8a4201d7cdb40f
--- /dev/null
+++ b/Source/UI/EcubeDialogComponent.h
@@ -0,0 +1,92 @@
+/*
+ ==============================================================================
+
+ This is an automatically generated GUI class created by the Introjucer!
+
+ Be careful when adding custom code to these files, as only the code within
+ the "//[xyz]" and "//[/xyz]" sections will be retained when the file is loaded
+ and re-saved.
+
+ Created with Introjucer version: 3.1.0
+
+ ------------------------------------------------------------------------------
+
+ The Introjucer is part of the JUCE library - "Jules' Utility Class Extensions"
+ Copyright 2004-13 by Raw Material Software Ltd.
+
+ ==============================================================================
+*/
+
+#ifndef __JUCE_HEADER_CDBC0626D3EB7016__
+#define __JUCE_HEADER_CDBC0626D3EB7016__
+
+//[Headers] -- You can add your own extra header files here --
+#include "JuceHeader.h"
+//[/Headers]
+
+
+
+//==============================================================================
+/**
+ //[Comments]
+ An auto-generated component, created by the Introjucer.
+
+ Describe your class and how it works here!
+ //[/Comments]
+*/
+class EcubeDialogComponent : public Component,
+ public ButtonListener,
+ public ComboBoxListener
+{
+public:
+ //==============================================================================
+ EcubeDialogComponent ();
+ ~EcubeDialogComponent();
+
+ //==============================================================================
+ //[UserMethods] -- You can add your own custom methods in this section.
+ String GetAddressValue();
+ String GetModuleName();
+ void SetDeviceNames(const StringArray& names);
+ void GetHeadstageSelection(bool hs[10]);
+ //[/UserMethods]
+
+ void paint (Graphics& g);
+ void resized();
+ void buttonClicked (Button* buttonThatWasClicked);
+ void comboBoxChanged (ComboBox* comboBoxThatHasChanged);
+
+
+
+private:
+ //[UserVariables] -- You can add your own custom variables in this section.
+ //[/UserVariables]
+
+ //==============================================================================
+ ScopedPointer<Label> laAddressLabel;
+ ScopedPointer<TextButton> bnOK;
+ ScopedPointer<TextButton> bnCancel;
+ ScopedPointer<ComboBox> comboModule;
+ ScopedPointer<Label> labelModule;
+ ScopedPointer<ComboBox> cbNetworkAddress;
+ ScopedPointer<GroupComponent> groupComponent;
+ ScopedPointer<ToggleButton> toggleHeadstage1;
+ ScopedPointer<ToggleButton> toggleHeadstage2;
+ ScopedPointer<ToggleButton> toggleHeadstage3;
+ ScopedPointer<ToggleButton> toggleHeadstage4;
+ ScopedPointer<ToggleButton> toggleHeadstage5;
+ ScopedPointer<ToggleButton> toggleHeadstage6;
+ ScopedPointer<ToggleButton> toggleHeadstage7;
+ ScopedPointer<ToggleButton> toggleHeadstage8;
+ ScopedPointer<ToggleButton> toggleHeadstage9;
+ ScopedPointer<ToggleButton> toggleHeadstage10;
+
+
+ //==============================================================================
+ JUCE_DECLARE_NON_COPYABLE_WITH_LEAK_DETECTOR (EcubeDialogComponent)
+};
+
+//[EndFile] You can add extra defines here...
+//[/EndFile]
+
+#endif // __JUCE_HEADER_CDBC0626D3EB7016__
diff --git a/Source/UI/EditorViewport.cpp b/Source/UI/EditorViewport.cpp
index e7d0ecfba23f6deac4a5285d0dabe7e00255998d..f941881d0e3601371224ccf06e70fcbec2fc418c 100755
--- a/Source/UI/EditorViewport.cpp
+++ b/Source/UI/EditorViewport.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -265,19 +265,21 @@ void EditorViewport::itemDropped(const SourceDetails& dragSourceDetails)
editorArray[i]->deselect();
}
- }
+ // Instructions below were enclosed into the if block by Michael Borisov
+ // To allow for errors during creation of editors, in which case activeEditor will be ==0
- insertionPoint = -1; // make sure all editors are left-justified
- indexOfMovingComponent = -1;
- refreshEditors();
+ insertionPoint = -1; // make sure all editors are left-justified
+ indexOfMovingComponent = -1;
+ refreshEditors();
- somethingIsBeingDraggedOver = false;
+ somethingIsBeingDraggedOver = false;
- getGraphViewer()->addNode(activeEditor);
+ getGraphViewer()->addNode(activeEditor);
- repaint();
+ repaint();
- currentId++;
+ currentId++;
+ }
}
}
@@ -349,6 +351,7 @@ void EditorViewport::deleteNode(GenericEditor* editor)
editor->setVisible(false);
signalChainManager->updateVisibleEditors(editor, indexOfMovingComponent, insertionPoint, REMOVE);
+
getGraphViewer()->removeNode(editor);
refreshEditors();
@@ -360,8 +363,6 @@ void EditorViewport::deleteNode(GenericEditor* editor)
somethingIsBeingDraggedOver = false;
-
-
repaint();
}
diff --git a/Source/UI/EditorViewport.h b/Source/UI/EditorViewport.h
index f79e08ea705dfc85f52cd969203a58cf7e9cb05d..1af46025a108b82219ba5ab17ae4e81385d0b8ce 100755
--- a/Source/UI/EditorViewport.h
+++ b/Source/UI/EditorViewport.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -25,10 +25,10 @@
#define __EDITORVIEWPORT_H_80260F3F__
#include "../../JuceLibraryCode/JuceHeader.h"
-#include "../Processors/ProcessorGraph.h"
+#include "../Processors/ProcessorGraph/ProcessorGraph.h"
#include "../Processors/Editors/GenericEditor.h"
-#include "../Processors/Editors/SplitterEditor.h"
-#include "../Processors/Editors/MergerEditor.h"
+#include "../Processors/Splitter/SplitterEditor.h"
+#include "../Processors/Merger/MergerEditor.h"
#include "../AccessClass.h"
#include "ControlPanel.h"
diff --git a/Source/UI/EditorViewportButtons.cpp b/Source/UI/EditorViewportButtons.cpp
index 41941caba1f6f58847bb508cdb8d2d5a9706a67f..7f990f49f38150c7e1cc348ad2c431dad7417421 100755
--- a/Source/UI/EditorViewportButtons.cpp
+++ b/Source/UI/EditorViewportButtons.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/EditorViewportButtons.h b/Source/UI/EditorViewportButtons.h
index a2c0a5fd45a4f195af3c08dfeaab0dda006eece5..783f159fdd3725902171047a5616ffa0322c9293 100755
--- a/Source/UI/EditorViewportButtons.h
+++ b/Source/UI/EditorViewportButtons.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/InfoLabel.cpp b/Source/UI/InfoLabel.cpp
index 2f31a165ae5539613e50caacda53cbb2fb5d2875..85811f96844cac40f31c11eeb8ac2679cf3080e7 100755
--- a/Source/UI/InfoLabel.cpp
+++ b/Source/UI/InfoLabel.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/InfoLabel.h b/Source/UI/InfoLabel.h
index 2a7ae6d448ed8834cf6593b7a7b3dfd331c99b1f..63cc6275686f00d1b1d2704af3014996c819836a 100755
--- a/Source/UI/InfoLabel.h
+++ b/Source/UI/InfoLabel.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/MessageCenter.cpp b/Source/UI/MessageCenter.cpp
deleted file mode 100755
index 5954d7375d525691cb3d426a5c6e2dd022cac01e..0000000000000000000000000000000000000000
--- a/Source/UI/MessageCenter.cpp
+++ /dev/null
@@ -1,72 +0,0 @@
-/*
- ------------------------------------------------------------------
-
- This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
-
- ------------------------------------------------------------------
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-
-*/
-
-#include "MessageCenter.h"
-
-//---------------------------------------------------------------------
-
-MessageCenter::MessageCenter() :
- messageBackground(Colours::grey.withAlpha(0.5f))
-{
-
- messageDisplayArea = new Label("Message Display Area","No new messages.");
-
- addAndMakeVisible(messageDisplayArea);
-
-}
-
-MessageCenter::~MessageCenter()
-{
-
-}
-
-void MessageCenter::paint(Graphics& g)
-{
-
- g.setColour(Colour(58,58,58));
-
- g.fillRect(0, 0, getWidth(), getHeight());
-
- g.setColour(messageBackground);
-
- g.fillRect(5, 5, getWidth()-10, getHeight()-10);
-
-}
-
-void MessageCenter::resized()
-{
- if (messageDisplayArea != 0)
- messageDisplayArea->setBounds(5,0,getWidth(),getHeight());
-
-}
-
-void MessageCenter::actionListenerCallback(const String& message)
-{
-
- messageDisplayArea->setText(message, dontSendNotification);
-
- messageBackground = Colours::orange;
-
- repaint();
-
-}
\ No newline at end of file
diff --git a/Source/UI/ProcessorList.cpp b/Source/UI/ProcessorList.cpp
index 7b72f4285b1f4bcea6e345918504cb7201b9f391..8413b86988a020d1618d5575b387902901172918 100755
--- a/Source/UI/ProcessorList.cpp
+++ b/Source/UI/ProcessorList.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -55,6 +55,11 @@ ProcessorList::ProcessorList()
//sources->addSubItem(new ProcessorListItem("Signal Generator"));
//sources->addSubItem(new ProcessorListItem("Custom FPGA"));
sources->addSubItem(new ProcessorListItem("Rhythm FPGA"));
+#if JUCE_WINDOWS // eCube module currently only available for Windows
+#ifdef ECUBE_COMPILE
+ sources->addSubItem(new ProcessorListItem("eCube")); // Added by Michael Borisov
+#endif
+#endif
sources->addSubItem(new ProcessorListItem("File Reader"));
//sources->addSubItem(new ProcessorListItem("Network Events"));
sources->addSubItem(new ProcessorListItem("Serial Port"));
@@ -63,6 +68,7 @@ ProcessorList::ProcessorList()
ProcessorListItem* filters = new ProcessorListItem("Filters");
filters->addSubItem(new ProcessorListItem("Bandpass Filter"));
filters->addSubItem(new ProcessorListItem("Spike Detector"));
+ filters->addSubItem(new ProcessorListItem("Spike Sorter"));
//filters->addSubItem(new ProcessorListItem("Resampler"));
filters->addSubItem(new ProcessorListItem("Phase Detector"));
//filters->addSubItem(new ProcessorListItem("Digital Ref"));
diff --git a/Source/UI/ProcessorList.h b/Source/UI/ProcessorList.h
index f78785a59e2666fd91d31162068e6900faf62e9d..4eac5ba805687a4f076d61968faa10e1d051b372 100755
--- a/Source/UI/ProcessorList.h
+++ b/Source/UI/ProcessorList.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -41,8 +41,6 @@ class UIComponent;
The ProcessorList be manually updated every time a new processor is created,
and the names must match those recognized by the ProcessorGraph.
- The ProcessorList is rendered using OpenGL and the FTGL font library.
-
@see EditorViewport, ProcessorGraph
*/
diff --git a/Source/UI/SignalChainManager.cpp b/Source/UI/SignalChainManager.cpp
index 9773e3227b32e5aff1936506df51b5a1fa79f36c..9b4bc305670fc1a8f5373f7e73ddbc7b2760aa2b 100755
--- a/Source/UI/SignalChainManager.cpp
+++ b/Source/UI/SignalChainManager.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/SignalChainManager.h b/Source/UI/SignalChainManager.h
index 672a6b69399b830ab92102415d875fda19f49b5b..84fac877fe1e388486500e276c4ce4c52ef14b9c 100755
--- a/Source/UI/SignalChainManager.h
+++ b/Source/UI/SignalChainManager.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
diff --git a/Source/UI/UIComponent.cpp b/Source/UI/UIComponent.cpp
index 5a8e90380c79b703f0db92a97ccd1a258813c947..ea50b16dd46551c5c5ba2dc18c93c4a3f4ec1df0 100755
--- a/Source/UI/UIComponent.cpp
+++ b/Source/UI/UIComponent.cpp
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -29,7 +29,11 @@ UIComponent::UIComponent(MainWindow* mainWindow_, ProcessorGraph* pgraph, AudioC
{
- processorGraph->setUIComponent(this);
+ processorGraph->createDefaultNodes();
+
+ messageCenterEditor = (MessageCenterEditor*) processorGraph->getMessageCenter()->createEditor();
+ addActionListener(messageCenterEditor);
+ addAndMakeVisible(messageCenterEditor);
infoLabel = new InfoLabel();
std::cout << "Created info label." << std::endl;
@@ -66,16 +70,12 @@ UIComponent::UIComponent(MainWindow* mainWindow_, ProcessorGraph* pgraph, AudioC
processorList->setBounds(0,0,195,processorList->getTotalHeight());
std::cout << "Created filter list." << std::endl;
- messageCenter = new MessageCenter();
- addActionListener(messageCenter);
- addAndMakeVisible(messageCenter);
-
std::cout << "Created message center." << std::endl;
setBounds(0,0,500,400);
- processorGraph->setUIComponent(this);
+ processorGraph->setUIComponent(this); // update pointers
processorList->setUIComponent(this);
editorViewport->setUIComponent(this);
dataViewport->setUIComponent(this);
@@ -227,11 +227,11 @@ void UIComponent::resized()
- if (messageCenter != 0)
+ if (messageCenterEditor != 0)
{
- messageCenter->setBounds(6,h-35,w-241,30);
+ messageCenterEditor->setBounds(6,h-35,w-241,30);
if (h < 200)
- messageCenter->setBounds(6,h-35+200-h,w-241,30);
+ messageCenterEditor->setBounds(6,h-35+200-h,w-241,30);
// else
// messageCenter->setVisible(true);
}
@@ -242,7 +242,7 @@ void UIComponent::resized()
dataViewport->setVisible(false);
editorViewport->setVisible(false);
processorList->setVisible(false);
- messageCenter->setVisible(false);
+ messageCenterEditor->setVisible(false);
controlPanel->setVisible(false);
editorViewportButton->setVisible(false);
}
diff --git a/Source/UI/UIComponent.h b/Source/UI/UIComponent.h
index 66caa4d1e4322374ba0ba0d20350203ab18ed7ee..3445800e53047a6c917e100215de077ff2117419 100755
--- a/Source/UI/UIComponent.h
+++ b/Source/UI/UIComponent.h
@@ -2,7 +2,7 @@
------------------------------------------------------------------
This file is part of the Open Ephys GUI
- Copyright (C) 2013 Open Ephys
+ Copyright (C) 2014 Open Ephys
------------------------------------------------------------------
@@ -30,9 +30,9 @@
#include "ProcessorList.h"
#include "EditorViewport.h"
#include "DataViewport.h"
-#include "MessageCenter.h"
+#include "../Processors/MessageCenter/MessageCenterEditor.h"
#include "GraphViewer.h"
-#include "../Processors/ProcessorGraph.h"
+#include "../Processors/ProcessorGraph/ProcessorGraph.h"
#include "../Audio/AudioComponent.h"
#include "../MainWindow.h"
@@ -104,10 +104,10 @@ public:
return controlPanel;
}
- /** Returns a pointer to the MessageCenter. */
- MessageCenter* getMessageCenter()
+ /** Returns a pointer to the MessageCenterEditor. */
+ MessageCenterEditor* getMessageCenter()
{
- return messageCenter;
+ return messageCenterEditor;
}
/** Returns a pointer to the UIComponent. */
@@ -171,7 +171,7 @@ private:
ScopedPointer<EditorViewportButton> editorViewportButton;
ScopedPointer<ProcessorList> processorList;
ScopedPointer<ControlPanel> controlPanel;
- ScopedPointer<MessageCenter> messageCenter;
+ MessageCenterEditor* messageCenterEditor; // owned by ProcessorGraph
ScopedPointer<InfoLabel> infoLabel;
ScopedPointer<GraphViewer> graphViewer;
diff --git a/open-ephys.jucer b/open-ephys.jucer
index 7c8fa8f5b539758b940de887cbe86f417de8c4bc..26bc0c1769d2df23e0792448b91eea172293a83c 100644
--- a/open-ephys.jucer
+++ b/open-ephys.jucer
@@ -1,18 +1,18 @@
<?xml version="1.0" encoding="UTF-8"?>
-<JUCERPROJECT id="ynSYIrr" name="open-ephys" projectType="guiapp" version="0.3.1"
+<JUCERPROJECT id="ynSYIrr" name="open-ephys" projectType="guiapp" version="0.3.2"
juceLinkage="amalg_multi" buildVST="1" buildRTAS="0" buildAU="1"
pluginName="Juce Project" pluginDesc="Juce Project" pluginManufacturer="yourcompany"
pluginManufacturerCode="Manu" pluginCode="Plug" pluginChannelConfigs="{1, 1}, {2, 2}"
pluginIsSynth="0" pluginWantsMidiIn="0" pluginProducesMidiOut="0"
pluginSilenceInIsSilenceOut="0" pluginTailLength="0" pluginEditorRequiresKeys="0"
pluginAUExportPrefix="JuceProjectAU" pluginAUViewClass="JuceProjectAU_V1"
- pluginRTASCategory="" bundleIdentifier="org.open-ephys.gui" jucerVersion="3.0.0"
+ pluginRTASCategory="" bundleIdentifier="org.open-ephys.gui" jucerVersion="3.1.0"
companyName="Open Ephys" userNotes="The Open Ephys GUI was designed to provide a fast and flexible interface for acquiring, processing, and visualizing data from extracellular electrodes. See open-ephys.org for more information."
includeBinaryInAppConfig="1">
<EXPORTFORMATS>
<XCODE_MAC targetFolder="Builds/MacOSX" vstFolder="~/SDKs/vstsdk2.4" rtasFolder="~/SDKs/PT_80_SDK"
- extraLinkerFlags="" objCExtraSuffix="fea2mT" externalLibraries="">
+ extraLinkerFlags="-lhdf5 -lhdf5_cpp" objCExtraSuffix="fea2mT">
<CONFIGURATIONS>
<CONFIGURATION name="Debug" isDebug="1" optimisation="3" targetName="open-ephys"
osxSDK="default" osxCompatibility="default" osxArchitecture="default"/>
@@ -37,8 +37,8 @@
<MODULEPATH id="juce_audio_basics" path="JuceLibraryCode/modules"/>
</MODULEPATHS>
</XCODE_MAC>
- <LINUX_MAKE targetFolder="Builds/Linux" vstFolder="~/SDKs/vstsdk2.4" juceFolder="JuceLibraryCode"
- extraLinkerFlags="-pg -ldl -lXext -lGLU -lhdf5" extraCompilerFlags="-export-dynamic -g -pg -std=c++0x">
+ <LINUX_MAKE targetFolder="Builds/Linux" vstFolder="~/SDKs/vstsdk2.4" extraLinkerFlags="-pg -ldl -lXext -lGLU -lhdf5 -lhdf5_cpp"
+ extraCompilerFlags="-export-dynamic -g -pg -std=c++0x">
<CONFIGURATIONS>
<CONFIGURATION name="Debug" isDebug="1" optimisation="3" targetName="open-ephys"
libraryPath="/usr/X11R6/lib/ /usr/local/include " headerPath=""/>
@@ -64,24 +64,24 @@
</MODULEPATHS>
</LINUX_MAKE>
<VS2012 targetFolder="Builds/VisualStudio2012" libraryType="1" extraDefs="NOMINMAX"
- externalLibraries="setupapi.lib opengl32.lib glu32.lib">
+ externalLibraries="setupapi.lib opengl32.lib glu32.lib hdf5.lib hdf5_cpp.lib">
<CONFIGURATIONS>
<CONFIGURATION name="Debug" winWarningLevel="4" generateManifest="1" winArchitecture="32-bit"
isDebug="1" optimisation="1" targetName="open-ephys" binaryPath="Builds\VisualStudio2012\Debug\bin"
- headerPath="../../Resources/Google Protocols/src" libraryPath="../../Resources/ZeroMQ/lib_x86 ../../Resources/Google Protocols/vsprojects/Debug"
- postbuildCommand="copy ..\..\Resources\DLLs\okFrontPanel.dll .\Debug\bin"/>
+ headerPath="../../Resources/windows-libs/HDF5/include" libraryPath="../../Resources/windows-libs/HDF5/lib/x86"
+ postbuildCommand="copy "..\..\Resources\DLLs\*.dll" "$(OutDir)""/>
<CONFIGURATION name="Release" winWarningLevel="4" generateManifest="1" winArchitecture="32-bit"
isDebug="0" optimisation="3" targetName="open-ephys" binaryPath="Builds\VisualStudio2012\Release\bin"
- headerPath="../../Resources/Google Protocols/src" libraryPath="../../Resources/ZeroMQ/lib_x86 ../../Resources/Google Protocols/vsprojects/Release"
- postbuildCommand="copy ..\..\Resources\DLLs\okFrontPanel.dll .\Release\bin"/>
+ headerPath="../../Resources/windows-libs/HDF5/include" libraryPath="../../Resources/windows-libs/HDF5/lib/x86"
+ postbuildCommand="copy "..\..\Resources\DLLs\*.dll" "$(OutDir)""/>
<CONFIGURATION name="Debug64" winWarningLevel="2" generateManifest="1" winArchitecture="x64"
isDebug="1" optimisation="1" targetName="open-ephys" binaryPath="Builds\VisualStudio2012\Debug64\bin"
- headerPath="../../Resources/Google Protocols/src" libraryPath="../../Resources/ZeroMQ/lib_x64 ../../Resources/Google Protocols/vsprojects/x64/Debug"
- postbuildCommand="copy ..\..\Resources\DLLs\Win64\okFrontPanel.dll .\Debug64\bin"/>
+ headerPath="../../Resources/windows-libs/HDF5/include" libraryPath="../../Resources/windows-libs/HDF5/lib/x64"
+ postbuildCommand="copy "..\..\Resources\DLLs\Win64\*.dll" "$(OutDir)""/>
<CONFIGURATION name="Release64" winWarningLevel="2" generateManifest="1" winArchitecture="x64"
isDebug="0" optimisation="3" targetName="open-ephys" binaryPath="Builds\VisualStudio2012\Release64\bin"
- headerPath="../../Resources/Google Protocols/src" libraryPath="../../Resources/ZeroMQ/lib_x64 ../../Resources/Google Protocols/vsprojects/x64/Release"
- postbuildCommand="copy ..\..\Resources\DLLs\Win64\okFrontPanel.dll .\Release64\bin"/>
+ headerPath="../../Resources/windows-libs/HDF5/include" libraryPath="../../Resources/windows-libs/HDF5/lib/x64"
+ postbuildCommand="copy "..\..\Resources\DLLs\Win64\*.dll" "$(OutDir)""/>
</CONFIGURATIONS>
<MODULEPATHS>
<MODULEPATH id="juce_video" path="JuceLibraryCode/modules"/>
@@ -101,6 +101,40 @@
<MODULEPATH id="juce_audio_basics" path="JuceLibraryCode/modules"/>
</MODULEPATHS>
</VS2012>
+ <VS2013 targetFolder="Builds/VisualStudio2013" externalLibraries="setupapi.lib opengl32.lib glu32.lib hdf5.lib hdf5_cpp.lib"
+ extraDefs="NOMINMAX">
+ <CONFIGURATIONS>
+ <CONFIGURATION name="Debug" winWarningLevel="4" generateManifest="1" winArchitecture="32-bit"
+ isDebug="1" optimisation="1" targetName="open-ephys" binaryPath="Builds\VisualStudio2013\Debug\bin"
+ headerPath="$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\include ../../Resources/Google Protocols/src "
+ libraryPath="../../Resources/ZeroMQ/lib_x86 ../../Resources/Google Protocols/vsprojects/Debug $(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib"
+ wholeProgramOptimisation="1" postbuildCommand="call "$(SolutionDir)\copydlls.cmd" "$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\bin" "$(SolutionDir)\..\..\Resources\DLLs" "$(OutDir)""
+ fastMath="1"/>
+ <CONFIGURATION name="Release" winWarningLevel="4" generateManifest="1" winArchitecture="32-bit"
+ isDebug="0" optimisation="3" targetName="open-ephys" binaryPath="Builds\VisualStudio2013\Release\bin"
+ headerPath="$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\include ../../Resources/Google Protocols/src"
+ libraryPath="$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\lib ../../Resources/ZeroMQ/lib_x86 ../../Resources/Google Protocols/vsprojects/Release"
+ postbuildCommand="call "$(SolutionDir)\copydlls.cmd" "$(MSBuildExtensionsPath32)\..\HDF_Group\HDF5\1.8.13\bin" "$(SolutionDir)\..\..\Resources\DLLs" "$(OutDir)""
+ fastMath="1"/>
+ </CONFIGURATIONS>
+ <MODULEPATHS>
+ <MODULEPATH id="juce_video" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_opengl" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_gui_extra" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_gui_basics" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_gui_audio" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_graphics" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_events" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_data_structures" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_cryptography" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_core" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_audio_utils" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_audio_processors" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_audio_formats" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_audio_devices" path="JuceLibraryCode/modules"/>
+ <MODULEPATH id="juce_audio_basics" path="JuceLibraryCode/modules"/>
+ </MODULEPATHS>
+ </VS2013>
</EXPORTFORMATS>
<MAINGROUP id="h3HbSTV" name="open-ephys">
<GROUP id="0wpTCpt" name="Resources">
@@ -227,52 +261,6 @@
<FILE id="5XGl6EX" name="PracticalSocket.h" compile="0" resource="0"
file="Source/Network/PracticalSocket.h"/>
</GROUP>
- <GROUP id="ZFZoGrT" name="Dsp">
- <FILE id="mUwiufK" name="Bessel.cpp" compile="1" resource="0" file="Source/Dsp/Bessel.cpp"/>
- <FILE id="vZ6Kudo" name="Bessel.h" compile="0" resource="0" file="Source/Dsp/Bessel.h"/>
- <FILE id="vwycpbo" name="Biquad.cpp" compile="1" resource="0" file="Source/Dsp/Biquad.cpp"/>
- <FILE id="a732gXS" name="Biquad.h" compile="0" resource="0" file="Source/Dsp/Biquad.h"/>
- <FILE id="0W6qAwa" name="Butterworth.cpp" compile="1" resource="0"
- file="Source/Dsp/Butterworth.cpp"/>
- <FILE id="UV5QzX8" name="Butterworth.h" compile="0" resource="0" file="Source/Dsp/Butterworth.h"/>
- <FILE id="KClKE8" name="Cascade.cpp" compile="1" resource="0" file="Source/Dsp/Cascade.cpp"/>
- <FILE id="ylsuRNY" name="Cascade.h" compile="0" resource="0" file="Source/Dsp/Cascade.h"/>
- <FILE id="o3iAh3a" name="ChebyshevI.cpp" compile="1" resource="0" file="Source/Dsp/ChebyshevI.cpp"/>
- <FILE id="WyXprJ9" name="ChebyshevI.h" compile="0" resource="0" file="Source/Dsp/ChebyshevI.h"/>
- <FILE id="b4qha7" name="ChebyshevII.cpp" compile="1" resource="0" file="Source/Dsp/ChebyshevII.cpp"/>
- <FILE id="LcWDNOk" name="ChebyshevII.h" compile="0" resource="0" file="Source/Dsp/ChebyshevII.h"/>
- <FILE id="XDyWZQQ" name="Common.h" compile="0" resource="0" file="Source/Dsp/Common.h"/>
- <FILE id="49hU2ny" name="Custom.cpp" compile="1" resource="0" file="Source/Dsp/Custom.cpp"/>
- <FILE id="xPXCA6M" name="Custom.h" compile="0" resource="0" file="Source/Dsp/Custom.h"/>
- <FILE id="2EpjlI" name="Design.cpp" compile="1" resource="0" file="Source/Dsp/Design.cpp"/>
- <FILE id="ptQmM0r" name="Design.h" compile="0" resource="0" file="Source/Dsp/Design.h"/>
- <FILE id="fAPODFz" name="Documentation.cpp" compile="1" resource="0"
- file="Source/Dsp/Documentation.cpp"/>
- <FILE id="JAPeScN" name="Dsp.h" compile="0" resource="0" file="Source/Dsp/Dsp.h"/>
- <FILE id="tr30OGq" name="Elliptic.cpp" compile="1" resource="0" file="Source/Dsp/Elliptic.cpp"/>
- <FILE id="qkR4YNx" name="Elliptic.h" compile="0" resource="0" file="Source/Dsp/Elliptic.h"/>
- <FILE id="XXTYoH9" name="Filter.cpp" compile="1" resource="0" file="Source/Dsp/Filter.cpp"/>
- <FILE id="ZYh8Cn" name="Filter.h" compile="0" resource="0" file="Source/Dsp/Filter.h"/>
- <FILE id="fzaQLV" name="Layout.h" compile="0" resource="0" file="Source/Dsp/Layout.h"/>
- <FILE id="1rzxhtw" name="Legendre.cpp" compile="1" resource="0" file="Source/Dsp/Legendre.cpp"/>
- <FILE id="vMzVy3f" name="Legendre.h" compile="0" resource="0" file="Source/Dsp/Legendre.h"/>
- <FILE id="Xgckbu9" name="MathSupplement.h" compile="0" resource="0"
- file="Source/Dsp/MathSupplement.h"/>
- <FILE id="1skPBI3" name="Param.cpp" compile="1" resource="0" file="Source/Dsp/Param.cpp"/>
- <FILE id="AJKO8Gc" name="Params.h" compile="0" resource="0" file="Source/Dsp/Params.h"/>
- <FILE id="m5Ywyi7" name="PoleFilter.cpp" compile="1" resource="0" file="Source/Dsp/PoleFilter.cpp"/>
- <FILE id="yghcXOB" name="PoleFilter.h" compile="0" resource="0" file="Source/Dsp/PoleFilter.h"/>
- <FILE id="HxU4He0" name="RBJ.cpp" compile="1" resource="0" file="Source/Dsp/RBJ.cpp"/>
- <FILE id="LzKYXte" name="RBJ.h" compile="0" resource="0" file="Source/Dsp/RBJ.h"/>
- <FILE id="KNsCh3Q" name="RootFinder.cpp" compile="1" resource="0" file="Source/Dsp/RootFinder.cpp"/>
- <FILE id="5FY4DiP" name="RootFinder.h" compile="0" resource="0" file="Source/Dsp/RootFinder.h"/>
- <FILE id="CZlsp9w" name="SmoothedFilter.h" compile="0" resource="0"
- file="Source/Dsp/SmoothedFilter.h"/>
- <FILE id="rj1CVK" name="State.cpp" compile="1" resource="0" file="Source/Dsp/State.cpp"/>
- <FILE id="floABAJ" name="State.h" compile="0" resource="0" file="Source/Dsp/State.h"/>
- <FILE id="Tnibh38" name="Types.h" compile="0" resource="0" file="Source/Dsp/Types.h"/>
- <FILE id="74WHAi" name="Utilities.h" compile="0" resource="0" file="Source/Dsp/Utilities.h"/>
- </GROUP>
<GROUP id="gRFzu0" name="Audio">
<FILE id="2vKx2R" name="AudioComponent.cpp" compile="1" resource="0"
file="Source/Audio/AudioComponent.cpp"/>
@@ -280,209 +268,49 @@
file="Source/Audio/AudioComponent.h"/>
</GROUP>
<GROUP id="yQmqZWk" name="Processors">
- <FILE id="Yj1umv" name="SerialInput.cpp" compile="1" resource="0" file="Source/Processors/SerialInput.cpp"/>
- <FILE id="TSsuVv" name="SerialInput.h" compile="0" resource="0" file="Source/Processors/SerialInput.h"/>
- <FILE id="M6nCIs" name="FileReader.cpp" compile="1" resource="0" file="Source/Processors/FileReader.cpp"/>
- <FILE id="VU1bQ0" name="FileReader.h" compile="0" resource="0" file="Source/Processors/FileReader.h"/>
- <FILE id="e7QoyI" name="ChannelMappingNode.cpp" compile="1" resource="0"
- file="Source/Processors/ChannelMappingNode.cpp"/>
- <FILE id="RzEj1s" name="ChannelMappingNode.h" compile="0" resource="0"
- file="Source/Processors/ChannelMappingNode.h"/>
- <FILE id="iCR52Z" name="PulsePalOutput.cpp" compile="1" resource="0"
- file="Source/Processors/PulsePalOutput.cpp"/>
- <FILE id="P6I3cq" name="PulsePalOutput.h" compile="0" resource="0"
- file="Source/Processors/PulsePalOutput.h"/>
- <FILE id="I3M3irE" name="ReferenceNode.cpp" compile="1" resource="0"
- file="Source/Processors/ReferenceNode.cpp"/>
- <FILE id="mkZIyij" name="ReferenceNode.h" compile="0" resource="0"
- file="Source/Processors/ReferenceNode.h"/>
- <FILE id="TBFDWIC" name="PhaseDetector.cpp" compile="1" resource="0"
- file="Source/Processors/PhaseDetector.cpp"/>
- <FILE id="M8cJMPk" name="PhaseDetector.h" compile="0" resource="0"
- file="Source/Processors/PhaseDetector.h"/>
- <FILE id="absuYrU" name="AudioResamplingNode.cpp" compile="1" resource="0"
- file="Source/Processors/AudioResamplingNode.cpp"/>
- <FILE id="V8uFwVV" name="AudioResamplingNode.h" compile="0" resource="0"
- file="Source/Processors/AudioResamplingNode.h"/>
- <FILE id="oYWM1J" name="Channel.cpp" compile="1" resource="0" file="Source/Processors/Channel.cpp"/>
- <FILE id="oBVEMRc" name="Channel.h" compile="0" resource="0" file="Source/Processors/Channel.h"/>
- <GROUP id="gFSbZKw" name="Serial">
- <FILE id="PHwlqi" name="PulsePal.cpp" compile="1" resource="0" file="Source/Processors/Serial/PulsePal.cpp"/>
- <FILE id="R4XRyB" name="PulsePal.h" compile="0" resource="0" file="Source/Processors/Serial/PulsePal.h"/>
- <FILE id="3t2ez3c" name="ofArduino.cpp" compile="1" resource="0" file="Source/Processors/Serial/ofArduino.cpp"/>
- <FILE id="bXASAoT" name="ofArduino.h" compile="0" resource="0" file="Source/Processors/Serial/ofArduino.h"/>
- <FILE id="hNTT1i1" name="ofConstants.h" compile="0" resource="0" file="Source/Processors/Serial/ofConstants.h"/>
- <FILE id="F97Ylmz" name="ofSerial.cpp" compile="1" resource="0" file="Source/Processors/Serial/ofSerial.cpp"/>
- <FILE id="wV1xn3Z" name="ofSerial.h" compile="0" resource="0" file="Source/Processors/Serial/ofSerial.h"/>
+ <GROUP id="{447899E6-3974-53D0-5588-79643E8F5CA3}" name="ArduinoOutput">
+ <FILE id="Ucs5gf" name="ArduinoOutput.cpp" compile="1" resource="0"
+ file="Source/Processors/ArduinoOutput/ArduinoOutput.cpp"/>
+ <FILE id="NnPKUY" name="ArduinoOutput.h" compile="0" resource="0" file="Source/Processors/ArduinoOutput/ArduinoOutput.h"/>
+ <FILE id="V4rkxc" name="ArduinoOutputEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/ArduinoOutput/ArduinoOutputEditor.cpp"/>
+ <FILE id="WWnk0U" name="ArduinoOutputEditor.h" compile="0" resource="0"
+ file="Source/Processors/ArduinoOutput/ArduinoOutputEditor.h"/>
</GROUP>
- <FILE id="rlxg06" name="EventDetector.cpp" compile="1" resource="0"
- file="Source/Processors/EventDetector.cpp"/>
- <FILE id="LWuAoXl" name="EventDetector.h" compile="0" resource="0"
- file="Source/Processors/EventDetector.h"/>
- <FILE id="caGBzB" name="FPGAOutput.cpp" compile="1" resource="0" file="Source/Processors/FPGAOutput.cpp"/>
- <FILE id="IUvIxV7" name="FPGAOutput.h" compile="0" resource="0" file="Source/Processors/FPGAOutput.h"/>
- <FILE id="wBm4y2" name="ArduinoOutput.cpp" compile="1" resource="0"
- file="Source/Processors/ArduinoOutput.cpp"/>
- <FILE id="1sbSwS7" name="ArduinoOutput.h" compile="0" resource="0"
- file="Source/Processors/ArduinoOutput.h"/>
- <FILE id="pQaYQiE" name="Parameter.cpp" compile="1" resource="0" file="Source/Processors/Parameter.cpp"/>
- <FILE id="0jxvc4H" name="Parameter.h" compile="0" resource="0" file="Source/Processors/Parameter.h"/>
- <FILE id="arRy5R" name="SpikeDisplayNode.cpp" compile="1" resource="0"
- file="Source/Processors/SpikeDisplayNode.cpp"/>
- <FILE id="VwDxj" name="SpikeDisplayNode.h" compile="0" resource="0"
- file="Source/Processors/SpikeDisplayNode.h"/>
- <FILE id="Poqus0b" name="WiFiOutput.cpp" compile="1" resource="0" file="Source/Processors/WiFiOutput.cpp"/>
- <FILE id="IklsJpw" name="WiFiOutput.h" compile="0" resource="0" file="Source/Processors/WiFiOutput.h"/>
- <FILE id="ZuMpSio" name="LfpDisplayNode.cpp" compile="1" resource="0"
- file="Source/Processors/LfpDisplayNode.cpp"/>
- <FILE id="VynGpEg" name="LfpDisplayNode.h" compile="0" resource="0"
- file="Source/Processors/LfpDisplayNode.h"/>
- <GROUP id="Enz7QFy" name="Utilities">
- <FILE id="llkb8mQ" name="RecordControl.cpp" compile="1" resource="0"
- file="Source/Processors/Utilities/RecordControl.cpp"/>
- <FILE id="jRqpt5T" name="RecordControl.h" compile="0" resource="0"
- file="Source/Processors/Utilities/RecordControl.h"/>
- <FILE id="qt6uLka" name="Merger.cpp" compile="1" resource="0" file="Source/Processors/Utilities/Merger.cpp"/>
- <FILE id="XNRlWg8" name="Merger.h" compile="0" resource="0" file="Source/Processors/Utilities/Merger.h"/>
- <FILE id="YMFH4P2" name="Splitter.cpp" compile="1" resource="0" file="Source/Processors/Utilities/Splitter.cpp"/>
- <FILE id="DXYynnz" name="Splitter.h" compile="0" resource="0" file="Source/Processors/Utilities/Splitter.h"/>
+ <GROUP id="{1932782D-9D00-9B76-92DC-94E7D42BF0D2}" name="AudioNode">
+ <FILE id="TV4cOO" name="AudioEditor.cpp" compile="1" resource="0" file="Source/Processors/AudioNode/AudioEditor.cpp"/>
+ <FILE id="erBMrA" name="AudioEditor.h" compile="0" resource="0" file="Source/Processors/AudioNode/AudioEditor.h"/>
+ <FILE id="jClaJf" name="AudioNode.cpp" compile="1" resource="0" file="Source/Processors/AudioNode/AudioNode.cpp"/>
+ <FILE id="LHkdoG" name="AudioNode.h" compile="0" resource="0" file="Source/Processors/AudioNode/AudioNode.h"/>
</GROUP>
- <GROUP id="W4eqkOy" name="Visualization">
- <FILE id="ajAJi" name="SpikeObject.cpp" compile="1" resource="0" file="Source/Processors/Visualization/SpikeObject.cpp"/>
- <FILE id="xqF5zL" name="SpikeObject.h" compile="0" resource="0" file="Source/Processors/Visualization/SpikeObject.h"/>
- <FILE id="jGEqDp" name="SpikeDisplayCanvas.cpp" compile="1" resource="0"
- file="Source/Processors/Visualization/SpikeDisplayCanvas.cpp"/>
- <FILE id="LVHMu2" name="SpikeDisplayCanvas.h" compile="0" resource="0"
- file="Source/Processors/Visualization/SpikeDisplayCanvas.h"/>
- <FILE id="yDPZGpt" name="Visualizer.h" compile="0" resource="0" file="Source/Processors/Visualization/Visualizer.h"/>
- <FILE id="BX1Vj3V" name="DataWindow.cpp" compile="1" resource="0" file="Source/Processors/Visualization/DataWindow.cpp"/>
- <FILE id="l2VKLuP" name="DataWindow.h" compile="0" resource="0" file="Source/Processors/Visualization/DataWindow.h"/>
- <FILE id="2rXPco7" name="LfpDisplayCanvas.cpp" compile="1" resource="0"
- file="Source/Processors/Visualization/LfpDisplayCanvas.cpp"/>
- <FILE id="18BC8qM" name="LfpDisplayCanvas.h" compile="0" resource="0"
- file="Source/Processors/Visualization/LfpDisplayCanvas.h"/>
- </GROUP>
- <FILE id="533rUXO" name="SpikeDetector.cpp" compile="1" resource="0"
- file="Source/Processors/SpikeDetector.cpp"/>
- <FILE id="jIX00WN" name="SpikeDetector.h" compile="0" resource="0"
- file="Source/Processors/SpikeDetector.h"/>
- <FILE id="gZRZq2O" name="AudioNode.cpp" compile="1" resource="0" file="Source/Processors/AudioNode.cpp"/>
- <FILE id="ZPSmLKn" name="AudioNode.h" compile="0" resource="0" file="Source/Processors/AudioNode.h"/>
- <FILE id="hGnGAjh" name="EventNode.cpp" compile="1" resource="0" file="Source/Processors/EventNode.cpp"/>
- <FILE id="dUtRN6" name="EventNode.h" compile="0" resource="0" file="Source/Processors/EventNode.h"/>
- <GROUP id="AqvwO6w" name="Editors">
- <FILE id="jQo6Ff" name="LfpTriggeredAverageEditor.cpp" compile="1"
- resource="0" file="Source/Processors/Editors/LfpTriggeredAverageEditor.cpp"/>
- <FILE id="RaQC38" name="LfpTriggeredAverageEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/LfpTriggeredAverageEditor.h"/>
- <FILE id="D3eN0G" name="SerialInputEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SerialInputEditor.cpp"/>
- <FILE id="iG39Gh" name="SerialInputEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SerialInputEditor.h"/>
- <FILE id="E2PXvz" name="ElectrodeButtons.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ElectrodeButtons.cpp"/>
- <FILE id="yriJOG" name="ElectrodeButtons.h" compile="0" resource="0"
- file="Source/Processors/Editors/ElectrodeButtons.h"/>
- <FILE id="g1ki17" name="ChannelMappingEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ChannelMappingEditor.cpp"/>
- <FILE id="KLhI0Q" name="ChannelMappingEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/ChannelMappingEditor.h"/>
- <FILE id="PobvRC" name="FileReaderEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/FileReaderEditor.cpp"/>
- <FILE id="hIDHaX" name="FileReaderEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/FileReaderEditor.h"/>
- <FILE id="Vy98eh" name="PhaseDetectorEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/PhaseDetectorEditor.cpp"/>
- <FILE id="vuvcfO" name="PhaseDetectorEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/PhaseDetectorEditor.h"/>
- <FILE id="NHDoDu" name="PulsePalOutputEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/PulsePalOutputEditor.cpp"/>
- <FILE id="dVyt6h" name="PulsePalOutputEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/PulsePalOutputEditor.h"/>
- <FILE id="Xy7AJu" name="RHD2000Editor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/RHD2000Editor.cpp"/>
- <FILE id="TKVa9h" name="RHD2000Editor.h" compile="0" resource="0" file="Source/Processors/Editors/RHD2000Editor.h"/>
- <FILE id="3P8oDf3" name="RecordControlEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/RecordControlEditor.cpp"/>
- <FILE id="hFb27ev" name="RecordControlEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/RecordControlEditor.h"/>
- <FILE id="tz64eOn" name="ReferenceNodeEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ReferenceNodeEditor.cpp"/>
- <FILE id="sxR3wcq" name="ReferenceNodeEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/ReferenceNodeEditor.h"/>
- <FILE id="vcZeT2R" name="ResamplingNodeEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ResamplingNodeEditor.cpp"/>
- <FILE id="pMjiz6m" name="ResamplingNodeEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/ResamplingNodeEditor.h"/>
- <FILE id="mvixd58" name="FPGAOutputEditor.cpp" compile="1" resource="1"
- file="Source/Processors/Editors/FPGAOutputEditor.cpp"/>
- <FILE id="phTDDOR" name="FPGAOutputEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/FPGAOutputEditor.h"/>
- <FILE id="oYeB8Hh" name="ArduinoOutputEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ArduinoOutputEditor.cpp"/>
- <FILE id="xfwOAJs" name="ArduinoOutputEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/ArduinoOutputEditor.h"/>
- <FILE id="rZGNxjv" name="ChannelSelector.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ChannelSelector.cpp"/>
- <FILE id="Yga4B3Z" name="ChannelSelector.h" compile="0" resource="0"
- file="Source/Processors/Editors/ChannelSelector.h"/>
- <FILE id="qWhyk9h" name="ParameterEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/ParameterEditor.cpp"/>
- <FILE id="3PkZxza" name="ParameterEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/ParameterEditor.h"/>
- <FILE id="s5YUmi" name="SpikeDisplayEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SpikeDisplayEditor.cpp"/>
- <FILE id="EE43GV" name="SpikeDisplayEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SpikeDisplayEditor.h"/>
- <FILE id="2XqqPOS" name="VisualizerEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/VisualizerEditor.cpp"/>
- <FILE id="CUHGPJF" name="VisualizerEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/VisualizerEditor.h"/>
- <FILE id="bsIZbuu" name="MergerEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/MergerEditor.cpp"/>
- <FILE id="vfmEY5L" name="MergerEditor.h" compile="0" resource="0" file="Source/Processors/Editors/MergerEditor.h"/>
- <FILE id="i2MR4pC" name="ImageIcon.cpp" compile="1" resource="0" file="Source/Processors/Editors/ImageIcon.cpp"/>
- <FILE id="N8r8D18" name="ImageIcon.h" compile="0" resource="0" file="Source/Processors/Editors/ImageIcon.h"/>
- <FILE id="mLd64ww" name="WiFiOutputEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/WiFiOutputEditor.cpp"/>
- <FILE id="qunHBGe" name="WiFiOutputEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/WiFiOutputEditor.h"/>
- <FILE id="5DPzIoS" name="EventNodeEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/EventNodeEditor.cpp"/>
- <FILE id="gva5me" name="EventNodeEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/EventNodeEditor.h"/>
- <FILE id="OJKuulJ" name="SignalGeneratorEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SignalGeneratorEditor.cpp"/>
- <FILE id="JhVBo3n" name="SignalGeneratorEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SignalGeneratorEditor.h"/>
- <FILE id="cTebrMp" name="LfpDisplayEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/LfpDisplayEditor.cpp"/>
- <FILE id="ru5zWWN" name="LfpDisplayEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/LfpDisplayEditor.h"/>
- <FILE id="ErsHzHU" name="SourceNodeEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SourceNodeEditor.cpp"/>
- <FILE id="wMP6rcZ" name="SourceNodeEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SourceNodeEditor.h"/>
- <FILE id="HZXZN8Z" name="SplitterEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SplitterEditor.cpp"/>
- <FILE id="LWp4vf" name="SplitterEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SplitterEditor.h"/>
- <FILE id="UCf00eh" name="SpikeDetectorEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/SpikeDetectorEditor.cpp"/>
- <FILE id="Q8ftPSA" name="SpikeDetectorEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/SpikeDetectorEditor.h"/>
- <FILE id="Nw6Lpmq" name="AudioEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/AudioEditor.cpp"/>
- <FILE id="atkKPmM" name="AudioEditor.h" compile="0" resource="0" file="Source/Processors/Editors/AudioEditor.h"/>
- <FILE id="4sHjKNc" name="FilterEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/FilterEditor.cpp"/>
- <FILE id="A2OQdsN" name="FilterEditor.h" compile="0" resource="0" file="Source/Processors/Editors/FilterEditor.h"/>
- <FILE id="9sKH5cL" name="GenericEditor.cpp" compile="1" resource="0"
- file="Source/Processors/Editors/GenericEditor.cpp"/>
- <FILE id="gETPJeW" name="GenericEditor.h" compile="0" resource="0"
- file="Source/Processors/Editors/GenericEditor.h"/>
+ <GROUP id="{ED1C2AFE-2ED9-D835-532A-4D6C558C73E7}" name="AudioResamplingNode">
+ <FILE id="YStaN1" name="AudioResamplingNode.cpp" compile="1" resource="0"
+ file="Source/Processors/AudioResamplingNode/AudioResamplingNode.cpp"/>
+ <FILE id="pnFZDY" name="AudioResamplingNode.h" compile="0" resource="0"
+ file="Source/Processors/AudioResamplingNode/AudioResamplingNode.h"/>
+ </GROUP>
+ <GROUP id="{46016F19-8F25-F540-AA1C-D6E87E8D7D31}" name="Channel">
+ <FILE id="X3I3e9" name="Channel.cpp" compile="1" resource="0" file="Source/Processors/Channel/Channel.cpp"/>
+ <FILE id="IEZGF3" name="Channel.h" compile="0" resource="0" file="Source/Processors/Channel/Channel.h"/>
+ </GROUP>
+ <GROUP id="{CC57D5E1-9093-9454-4B03-5908715DFBD8}" name="ChannelMappingNode">
+ <FILE id="UhpW2V" name="ChannelMappingEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/ChannelMappingNode/ChannelMappingEditor.cpp"/>
+ <FILE id="kq8tJl" name="ChannelMappingEditor.h" compile="0" resource="0"
+ file="Source/Processors/ChannelMappingNode/ChannelMappingEditor.h"/>
+ <FILE id="gRCztM" name="ChannelMappingNode.cpp" compile="1" resource="0"
+ file="Source/Processors/ChannelMappingNode/ChannelMappingNode.cpp"/>
+ <FILE id="blwGma" name="ChannelMappingNode.h" compile="0" resource="0"
+ file="Source/Processors/ChannelMappingNode/ChannelMappingNode.h"/>
</GROUP>
<GROUP id="ZgsuWxi" name="DataThreads">
+ <FILE id="gHzlwP" name="EcubeEditor.cpp" compile="1" resource="0" file="Source/Processors/DataThreads/EcubeEditor.cpp"/>
+ <FILE id="Bi0une" name="EcubeEditor.h" compile="0" resource="0" file="Source/Processors/DataThreads/EcubeEditor.h"/>
+ <FILE id="ZBPSXE" name="RHD2000Editor.cpp" compile="1" resource="0"
+ file="Source/Processors/DataThreads/RHD2000Editor.cpp"/>
+ <FILE id="TnZlGU" name="RHD2000Editor.h" compile="0" resource="0" file="Source/Processors/DataThreads/RHD2000Editor.h"/>
+ <FILE id="mbMbly" name="EcubeThread.cpp" compile="1" resource="0" file="Source/Processors/DataThreads/EcubeThread.cpp"/>
+ <FILE id="lKsc0T" name="EcubeThread.h" compile="0" resource="0" file="Source/Processors/DataThreads/EcubeThread.h"/>
<GROUP id="LcWQtrg" name="rhythm-api">
<FILE id="hyM1EYD" name="okFrontPanelDLL.cpp" compile="1" resource="0"
file="Source/Processors/DataThreads/rhythm-api/okFrontPanelDLL.cpp"/>
@@ -516,30 +344,342 @@
<FILE id="9JbVKlA" name="DataThread.cpp" compile="1" resource="0" file="Source/Processors/DataThreads/DataThread.cpp"/>
<FILE id="McgNvuR" name="DataThread.h" compile="0" resource="0" file="Source/Processors/DataThreads/DataThread.h"/>
</GROUP>
- <FILE id="f34QY5Q" name="RecordNode.cpp" compile="1" resource="0" file="Source/Processors/RecordNode.cpp"/>
- <FILE id="ne3WPH4" name="RecordNode.h" compile="0" resource="0" file="Source/Processors/RecordNode.h"/>
- <FILE id="JXxx5p" name="SignalGenerator.cpp" compile="1" resource="0"
- file="Source/Processors/SignalGenerator.cpp"/>
- <FILE id="6xlnGdF" name="SignalGenerator.h" compile="0" resource="0"
- file="Source/Processors/SignalGenerator.h"/>
- <FILE id="5xMSqrr" name="ResamplingNode.cpp" compile="1" resource="0"
- file="Source/Processors/ResamplingNode.cpp"/>
- <FILE id="G3kmYa" name="ResamplingNode.h" compile="0" resource="0"
- file="Source/Processors/ResamplingNode.h"/>
- <FILE id="8KOCQ0m" name="FilterNode.cpp" compile="1" resource="0" file="Source/Processors/FilterNode.cpp"/>
- <FILE id="BLwO4vF" name="FilterNode.h" compile="0" resource="0" file="Source/Processors/FilterNode.h"/>
- <FILE id="OakAxjJ" name="SourceNode.cpp" compile="1" resource="0" file="Source/Processors/SourceNode.cpp"/>
- <FILE id="T6xYPnw" name="SourceNode.h" compile="0" resource="0" file="Source/Processors/SourceNode.h"/>
- <FILE id="s8On6e" name="GenericProcessor.cpp" compile="1" resource="0"
- file="Source/Processors/GenericProcessor.cpp"/>
- <FILE id="tjR32I" name="GenericProcessor.h" compile="0" resource="0"
- file="Source/Processors/GenericProcessor.h"/>
- <FILE id="z3gsHSY" name="ProcessorGraph.cpp" compile="1" resource="0"
- file="Source/Processors/ProcessorGraph.cpp"/>
- <FILE id="WbqC0CB" name="ProcessorGraph.h" compile="0" resource="0"
- file="Source/Processors/ProcessorGraph.h"/>
+ <GROUP id="{BCF99568-D3A2-7CA2-E809-815D22183EA4}" name="Dsp">
+ <FILE id="PHlcin" name="Bessel.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Bessel.cpp"/>
+ <FILE id="YXAcyZ" name="Bessel.h" compile="0" resource="0" file="Source/Processors/Dsp/Bessel.h"/>
+ <FILE id="nOEja0" name="Biquad.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Biquad.cpp"/>
+ <FILE id="DxX7XS" name="Biquad.h" compile="0" resource="0" file="Source/Processors/Dsp/Biquad.h"/>
+ <FILE id="VQ44sd" name="Butterworth.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Butterworth.cpp"/>
+ <FILE id="NVAymk" name="Butterworth.h" compile="0" resource="0" file="Source/Processors/Dsp/Butterworth.h"/>
+ <FILE id="FkrTqV" name="Cascade.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Cascade.cpp"/>
+ <FILE id="pj0T3e" name="Cascade.h" compile="0" resource="0" file="Source/Processors/Dsp/Cascade.h"/>
+ <FILE id="ggju8m" name="ChebyshevI.cpp" compile="1" resource="0" file="Source/Processors/Dsp/ChebyshevI.cpp"/>
+ <FILE id="EGxTwj" name="ChebyshevI.h" compile="0" resource="0" file="Source/Processors/Dsp/ChebyshevI.h"/>
+ <FILE id="nWSeZF" name="ChebyshevII.cpp" compile="1" resource="0" file="Source/Processors/Dsp/ChebyshevII.cpp"/>
+ <FILE id="HS65B6" name="ChebyshevII.h" compile="0" resource="0" file="Source/Processors/Dsp/ChebyshevII.h"/>
+ <FILE id="jumO5X" name="Common.h" compile="0" resource="0" file="Source/Processors/Dsp/Common.h"/>
+ <FILE id="E1ZdBg" name="Custom.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Custom.cpp"/>
+ <FILE id="JAxvZH" name="Custom.h" compile="0" resource="0" file="Source/Processors/Dsp/Custom.h"/>
+ <FILE id="BynrL2" name="Design.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Design.cpp"/>
+ <FILE id="tINM97" name="Design.h" compile="0" resource="0" file="Source/Processors/Dsp/Design.h"/>
+ <FILE id="gikZHr" name="Documentation.cpp" compile="1" resource="0"
+ file="Source/Processors/Dsp/Documentation.cpp"/>
+ <FILE id="nwwW9u" name="Dsp.h" compile="0" resource="0" file="Source/Processors/Dsp/Dsp.h"/>
+ <FILE id="VMtjos" name="Elliptic.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Elliptic.cpp"/>
+ <FILE id="xlw76X" name="Elliptic.h" compile="0" resource="0" file="Source/Processors/Dsp/Elliptic.h"/>
+ <FILE id="SSUdH3" name="Filter.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Filter.cpp"/>
+ <FILE id="jMEqrr" name="Filter.h" compile="0" resource="0" file="Source/Processors/Dsp/Filter.h"/>
+ <FILE id="gORopa" name="Layout.h" compile="0" resource="0" file="Source/Processors/Dsp/Layout.h"/>
+ <FILE id="KFWbTw" name="Legendre.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Legendre.cpp"/>
+ <FILE id="QukTBD" name="Legendre.h" compile="0" resource="0" file="Source/Processors/Dsp/Legendre.h"/>
+ <FILE id="yjHeg0" name="MathSupplement.h" compile="0" resource="0"
+ file="Source/Processors/Dsp/MathSupplement.h"/>
+ <FILE id="lSjPpg" name="Param.cpp" compile="1" resource="0" file="Source/Processors/Dsp/Param.cpp"/>
+ <FILE id="GbSbST" name="Params.h" compile="0" resource="0" file="Source/Processors/Dsp/Params.h"/>
+ <FILE id="iTSDrw" name="PoleFilter.cpp" compile="1" resource="0" file="Source/Processors/Dsp/PoleFilter.cpp"/>
+ <FILE id="c45usH" name="PoleFilter.h" compile="0" resource="0" file="Source/Processors/Dsp/PoleFilter.h"/>
+ <FILE id="UEmTDD" name="RBJ.cpp" compile="1" resource="0" file="Source/Processors/Dsp/RBJ.cpp"/>
+ <FILE id="PjXcyh" name="RBJ.h" compile="0" resource="0" file="Source/Processors/Dsp/RBJ.h"/>
+ <FILE id="n1FzuK" name="RootFinder.cpp" compile="1" resource="0" file="Source/Processors/Dsp/RootFinder.cpp"/>
+ <FILE id="aDg7vK" name="RootFinder.h" compile="0" resource="0" file="Source/Processors/Dsp/RootFinder.h"/>
+ <FILE id="DE0lE3" name="SmoothedFilter.h" compile="0" resource="0"
+ file="Source/Processors/Dsp/SmoothedFilter.h"/>
+ <FILE id="SPcR5B" name="State.cpp" compile="1" resource="0" file="Source/Processors/Dsp/State.cpp"/>
+ <FILE id="D1k4f9" name="State.h" compile="0" resource="0" file="Source/Processors/Dsp/State.h"/>
+ <FILE id="BBxUBy" name="Types.h" compile="0" resource="0" file="Source/Processors/Dsp/Types.h"/>
+ <FILE id="qXPdAz" name="Utilities.h" compile="0" resource="0" file="Source/Processors/Dsp/Utilities.h"/>
+ </GROUP>
+ <GROUP id="AqvwO6w" name="Editors">
+ <FILE id="F68NQ3" name="ChannelSelector.cpp" compile="1" resource="0"
+ file="Source/Processors/Editors/ChannelSelector.cpp"/>
+ <FILE id="cOToxV" name="ChannelSelector.h" compile="0" resource="0"
+ file="Source/Processors/Editors/ChannelSelector.h"/>
+ <FILE id="EXjl1X" name="ElectrodeButtons.cpp" compile="1" resource="0"
+ file="Source/Processors/Editors/ElectrodeButtons.cpp"/>
+ <FILE id="aOEJ7T" name="ElectrodeButtons.h" compile="0" resource="0"
+ file="Source/Processors/Editors/ElectrodeButtons.h"/>
+ <FILE id="dlQddi" name="GenericEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/Editors/GenericEditor.cpp"/>
+ <FILE id="NZjjLm" name="GenericEditor.h" compile="0" resource="0" file="Source/Processors/Editors/GenericEditor.h"/>
+ <FILE id="mqcmr8" name="ImageIcon.cpp" compile="1" resource="0" file="Source/Processors/Editors/ImageIcon.cpp"/>
+ <FILE id="GLT84s" name="ImageIcon.h" compile="0" resource="0" file="Source/Processors/Editors/ImageIcon.h"/>
+ <FILE id="c8F02O" name="VisualizerEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/Editors/VisualizerEditor.cpp"/>
+ <FILE id="qGudPl" name="VisualizerEditor.h" compile="0" resource="0"
+ file="Source/Processors/Editors/VisualizerEditor.h"/>
+ </GROUP>
+ <GROUP id="{5884418B-6740-1CC4-EC34-721D3F3038AE}" name="EventDetector">
+ <FILE id="GzQXNv" name="EventDetector.cpp" compile="1" resource="0"
+ file="Source/Processors/EventDetector/EventDetector.cpp"/>
+ <FILE id="cB7MXO" name="EventDetector.h" compile="0" resource="0" file="Source/Processors/EventDetector/EventDetector.h"/>
+ </GROUP>
+ <GROUP id="{0F7938FB-ACA3-29CA-58CE-2F0C8B5B0033}" name="EventNode">
+ <FILE id="FWXJPq" name="EventNode.cpp" compile="1" resource="0" file="Source/Processors/EventNode/EventNode.cpp"/>
+ <FILE id="muOEC8" name="EventNode.h" compile="0" resource="0" file="Source/Processors/EventNode/EventNode.h"/>
+ <FILE id="Kwuq6Z" name="EventNodeEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/EventNode/EventNodeEditor.cpp"/>
+ <FILE id="LUVId3" name="EventNodeEditor.h" compile="0" resource="0"
+ file="Source/Processors/EventNode/EventNodeEditor.h"/>
+ </GROUP>
+ <GROUP id="{27CF9A8D-7C31-9AA9-6DCA-6C719E127923}" name="FileReader">
+ <FILE id="Pg9JfX" name="FileReader.cpp" compile="1" resource="0" file="Source/Processors/FileReader/FileReader.cpp"/>
+ <FILE id="SuAWvs" name="FileReader.h" compile="0" resource="0" file="Source/Processors/FileReader/FileReader.h"/>
+ <FILE id="Z58rr6" name="FileReaderEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/FileReader/FileReaderEditor.cpp"/>
+ <FILE id="Ocpu1k" name="FileReaderEditor.h" compile="0" resource="0"
+ file="Source/Processors/FileReader/FileReaderEditor.h"/>
+ </GROUP>
+ <GROUP id="{986528D4-813B-6CCB-4564-5A15140EB912}" name="FilterNode">
+ <FILE id="yBlgAF" name="FilterEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/FilterNode/FilterEditor.cpp"/>
+ <FILE id="sBtXDo" name="FilterEditor.h" compile="0" resource="0" file="Source/Processors/FilterNode/FilterEditor.h"/>
+ <FILE id="usXu7Q" name="FilterNode.cpp" compile="1" resource="0" file="Source/Processors/FilterNode/FilterNode.cpp"/>
+ <FILE id="qnkW8d" name="FilterNode.h" compile="0" resource="0" file="Source/Processors/FilterNode/FilterNode.h"/>
+ </GROUP>
+ <GROUP id="{C47ABFBD-BC30-F6F2-B445-67B11DC5594F}" name="FPGAOutput">
+ <FILE id="DY6GL1" name="FPGAOutput.cpp" compile="1" resource="0" file="Source/Processors/FPGAOutput/FPGAOutput.cpp"/>
+ <FILE id="CdbTqf" name="FPGAOutput.h" compile="0" resource="0" file="Source/Processors/FPGAOutput/FPGAOutput.h"/>
+ <FILE id="tH5H69" name="FPGAOutputEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/FPGAOutput/FPGAOutputEditor.cpp"/>
+ <FILE id="e1ivPs" name="FPGAOutputEditor.h" compile="0" resource="0"
+ file="Source/Processors/FPGAOutput/FPGAOutputEditor.h"/>
+ </GROUP>
+ <GROUP id="{95FA3CAF-7BFA-AFF7-4480-EADCCA5FBA66}" name="GenericProcessor">
+ <FILE id="l24v5k" name="GenericProcessor.cpp" compile="1" resource="0"
+ file="Source/Processors/GenericProcessor/GenericProcessor.cpp"/>
+ <FILE id="jSfKFd" name="GenericProcessor.h" compile="0" resource="0"
+ file="Source/Processors/GenericProcessor/GenericProcessor.h"/>
+ </GROUP>
+ <GROUP id="{B8EDEED3-180D-9198-31A8-D1E42439462C}" name="LfpDisplayNode">
+ <FILE id="jKpYbZ" name="LfpDisplayCanvas.cpp" compile="1" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayCanvas.cpp"/>
+ <FILE id="wDsfeN" name="LfpDisplayCanvas.h" compile="0" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayCanvas.h"/>
+ <FILE id="tWxSDp" name="LfpDisplayEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayEditor.cpp"/>
+ <FILE id="Nkg6ww" name="LfpDisplayEditor.h" compile="0" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayEditor.h"/>
+ <FILE id="x9mO0H" name="LfpDisplayNode.cpp" compile="1" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayNode.cpp"/>
+ <FILE id="rKu45v" name="LfpDisplayNode.h" compile="0" resource="0"
+ file="Source/Processors/LfpDisplayNode/LfpDisplayNode.h"/>
+ </GROUP>
+ <GROUP id="{D20DFFFD-08E8-5CC6-479A-07CECDE9BC86}" name="LfpTriggeredAverageNode">
+ <FILE id="dxKyFx" name="LfpTriggeredAverageCanvas.cpp" compile="1"
+ resource="0" file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.cpp"/>
+ <FILE id="CMxAvm" name="LfpTriggeredAverageCanvas.h" compile="0" resource="0"
+ file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageCanvas.h"/>
+ <FILE id="VhsonN" name="LfpTriggeredAverageEditor.cpp" compile="1"
+ resource="0" file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.cpp"/>
+ <FILE id="jVc0dD" name="LfpTriggeredAverageEditor.h" compile="0" resource="0"
+ file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageEditor.h"/>
+ <FILE id="ADrDsi" name="LfpTriggeredAverageNode.cpp" compile="1" resource="0"
+ file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.cpp"/>
+ <FILE id="wEt96B" name="LfpTriggeredAverageNode.h" compile="0" resource="0"
+ file="Source/Processors/LfpTriggeredAverageNode/LfpTriggeredAverageNode.h"/>
+ </GROUP>
+ <GROUP id="{4B40CAAE-49C7-509A-B7E7-0C7EF011FBA1}" name="Merger">
+ <FILE id="gZxAmt" name="Merger.cpp" compile="1" resource="0" file="Source/Processors/Merger/Merger.cpp"/>
+ <FILE id="w8qwHK" name="Merger.h" compile="0" resource="0" file="Source/Processors/Merger/Merger.h"/>
+ <FILE id="YIzAwj" name="MergerEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/Merger/MergerEditor.cpp"/>
+ <FILE id="yquxy4" name="MergerEditor.h" compile="0" resource="0" file="Source/Processors/Merger/MergerEditor.h"/>
+ </GROUP>
+ <GROUP id="{6E21A406-000C-7894-28D6-2B45D07A304B}" name="MessageCenter">
+ <FILE id="gnNHUQ" name="MessageCenter.cpp" compile="1" resource="0"
+ file="Source/Processors/MessageCenter/MessageCenter.cpp"/>
+ <FILE id="vn2uwZ" name="MessageCenter.h" compile="0" resource="0" file="Source/Processors/MessageCenter/MessageCenter.h"/>
+ <FILE id="xGnJo5" name="MessageCenterEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/MessageCenter/MessageCenterEditor.cpp"/>
+ <FILE id="r1V0KZ" name="MessageCenterEditor.h" compile="0" resource="0"
+ file="Source/Processors/MessageCenter/MessageCenterEditor.h"/>
+ </GROUP>
+ <GROUP id="{86B5AC2A-0A78-6D0E-C5FE-6758DDD096DB}" name="Parameter">
+ <FILE id="yyyDtp" name="ParameterEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/Parameter/ParameterEditor.cpp"/>
+ <FILE id="t3vpkl" name="ParameterEditor.h" compile="0" resource="0"
+ file="Source/Processors/Parameter/ParameterEditor.h"/>
+ <FILE id="P4fc98" name="Parameter.cpp" compile="1" resource="0" file="Source/Processors/Parameter/Parameter.cpp"/>
+ <FILE id="QdTalD" name="Parameter.h" compile="0" resource="0" file="Source/Processors/Parameter/Parameter.h"/>
+ </GROUP>
+ <GROUP id="{0FB1D636-E24B-00AB-3123-3C8B78796B4A}" name="PhaseDetector">
+ <FILE id="l7SGiM" name="PhaseDetector.cpp" compile="1" resource="0"
+ file="Source/Processors/PhaseDetector/PhaseDetector.cpp"/>
+ <FILE id="eKMXut" name="PhaseDetector.h" compile="0" resource="0" file="Source/Processors/PhaseDetector/PhaseDetector.h"/>
+ <FILE id="T9hV0k" name="PhaseDetectorEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/PhaseDetector/PhaseDetectorEditor.cpp"/>
+ <FILE id="d4b1Wv" name="PhaseDetectorEditor.h" compile="0" resource="0"
+ file="Source/Processors/PhaseDetector/PhaseDetectorEditor.h"/>
+ </GROUP>
+ <GROUP id="{FDEB8810-D49F-8E7C-17A7-685370EF966F}" name="ProcessorGraph">
+ <FILE id="qil3t5" name="ProcessorGraph.cpp" compile="1" resource="0"
+ file="Source/Processors/ProcessorGraph/ProcessorGraph.cpp"/>
+ <FILE id="cwGSmb" name="ProcessorGraph.h" compile="0" resource="0"
+ file="Source/Processors/ProcessorGraph/ProcessorGraph.h"/>
+ </GROUP>
+ <GROUP id="{B89E3035-1523-BBAA-12A9-AA81313B7E8F}" name="PulsePalOutput">
+ <FILE id="LEaT0R" name="PulsePalOutput.cpp" compile="1" resource="0"
+ file="Source/Processors/PulsePalOutput/PulsePalOutput.cpp"/>
+ <FILE id="BwbX8M" name="PulsePalOutput.h" compile="0" resource="0"
+ file="Source/Processors/PulsePalOutput/PulsePalOutput.h"/>
+ <FILE id="U4ISc3" name="PulsePalOutputEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/PulsePalOutput/PulsePalOutputEditor.cpp"/>
+ <FILE id="ugyMou" name="PulsePalOutputEditor.h" compile="0" resource="0"
+ file="Source/Processors/PulsePalOutput/PulsePalOutputEditor.h"/>
+ </GROUP>
+ <GROUP id="{75D455A6-2354-C8A4-0F0F-EE14C166944C}" name="RecordControl">
+ <FILE id="NfBdVb" name="RecordControl.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordControl/RecordControl.cpp"/>
+ <FILE id="URvuJK" name="RecordControl.h" compile="0" resource="0" file="Source/Processors/RecordControl/RecordControl.h"/>
+ <FILE id="sovXVI" name="RecordControlEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordControl/RecordControlEditor.cpp"/>
+ <FILE id="CKRdQf" name="RecordControlEditor.h" compile="0" resource="0"
+ file="Source/Processors/RecordControl/RecordControlEditor.h"/>
+ </GROUP>
+ <GROUP id="{72D807AC-44A0-1F7A-8699-22225876FE9A}" name="RecordNode">
+ <FILE id="deQ9TU" name="EngineConfigWindow.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordNode/EngineConfigWindow.cpp"/>
+ <FILE id="iSAT0P" name="EngineConfigWindow.h" compile="0" resource="0"
+ file="Source/Processors/RecordNode/EngineConfigWindow.h"/>
+ <FILE id="gZdszH" name="HDF5FileFormat.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordNode/HDF5FileFormat.cpp"/>
+ <FILE id="EF7IbH" name="HDF5FileFormat.h" compile="0" resource="0"
+ file="Source/Processors/RecordNode/HDF5FileFormat.h"/>
+ <FILE id="dpOVsD" name="HDF5Recording.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordNode/HDF5Recording.cpp"/>
+ <FILE id="DJgCzN" name="HDF5Recording.h" compile="0" resource="0" file="Source/Processors/RecordNode/HDF5Recording.h"/>
+ <FILE id="dpsAhU" name="OriginalRecording.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordNode/OriginalRecording.cpp"/>
+ <FILE id="okexpc" name="OriginalRecording.h" compile="0" resource="0"
+ file="Source/Processors/RecordNode/OriginalRecording.h"/>
+ <FILE id="UU77gU" name="RecordEngine.cpp" compile="1" resource="0"
+ file="Source/Processors/RecordNode/RecordEngine.cpp"/>
+ <FILE id="NSKXGp" name="RecordEngine.h" compile="0" resource="0" file="Source/Processors/RecordNode/RecordEngine.h"/>
+ <FILE id="ccpPpJ" name="RecordNode.cpp" compile="1" resource="0" file="Source/Processors/RecordNode/RecordNode.cpp"/>
+ <FILE id="R9n30e" name="RecordNode.h" compile="0" resource="0" file="Source/Processors/RecordNode/RecordNode.h"/>
+ </GROUP>
+ <GROUP id="{B0C14DBE-8CC1-F242-3534-1DFBEAC5E43B}" name="ReferenceNode">
+ <FILE id="F7WTBV" name="ReferenceNode.cpp" compile="1" resource="0"
+ file="Source/Processors/ReferenceNode/ReferenceNode.cpp"/>
+ <FILE id="XyYPUn" name="ReferenceNode.h" compile="0" resource="0" file="Source/Processors/ReferenceNode/ReferenceNode.h"/>
+ <FILE id="tsfK4e" name="ReferenceNodeEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/ReferenceNode/ReferenceNodeEditor.cpp"/>
+ <FILE id="virGvM" name="ReferenceNodeEditor.h" compile="0" resource="0"
+ file="Source/Processors/ReferenceNode/ReferenceNodeEditor.h"/>
+ </GROUP>
+ <GROUP id="{C6F1F354-C97E-128E-9C4E-2376E039F233}" name="ResamplingNode">
+ <FILE id="yIwQ4b" name="ResamplingNode.cpp" compile="1" resource="0"
+ file="Source/Processors/ResamplingNode/ResamplingNode.cpp"/>
+ <FILE id="h1zDlH" name="ResamplingNode.h" compile="0" resource="0"
+ file="Source/Processors/ResamplingNode/ResamplingNode.h"/>
+ <FILE id="LByZh0" name="ResamplingNodeEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/ResamplingNode/ResamplingNodeEditor.cpp"/>
+ <FILE id="UFlCtp" name="ResamplingNodeEditor.h" compile="0" resource="0"
+ file="Source/Processors/ResamplingNode/ResamplingNodeEditor.h"/>
+ </GROUP>
+ <GROUP id="gFSbZKw" name="Serial">
+ <FILE id="PHwlqi" name="PulsePal.cpp" compile="1" resource="0" file="Source/Processors/Serial/PulsePal.cpp"/>
+ <FILE id="R4XRyB" name="PulsePal.h" compile="0" resource="0" file="Source/Processors/Serial/PulsePal.h"/>
+ <FILE id="3t2ez3c" name="ofArduino.cpp" compile="1" resource="0" file="Source/Processors/Serial/ofArduino.cpp"/>
+ <FILE id="bXASAoT" name="ofArduino.h" compile="0" resource="0" file="Source/Processors/Serial/ofArduino.h"/>
+ <FILE id="hNTT1i1" name="ofConstants.h" compile="0" resource="0" file="Source/Processors/Serial/ofConstants.h"/>
+ <FILE id="F97Ylmz" name="ofSerial.cpp" compile="1" resource="0" file="Source/Processors/Serial/ofSerial.cpp"/>
+ <FILE id="wV1xn3Z" name="ofSerial.h" compile="0" resource="0" file="Source/Processors/Serial/ofSerial.h"/>
+ </GROUP>
+ <GROUP id="{C5E76874-E767-D4E0-D8B6-F61DBB446F13}" name="SerialInput">
+ <FILE id="dWXqU4" name="SerialInput.cpp" compile="1" resource="0" file="Source/Processors/SerialInput/SerialInput.cpp"/>
+ <FILE id="EReMRm" name="SerialInput.h" compile="0" resource="0" file="Source/Processors/SerialInput/SerialInput.h"/>
+ <FILE id="Q0XOjv" name="SerialInputEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SerialInput/SerialInputEditor.cpp"/>
+ <FILE id="s0Nf1X" name="SerialInputEditor.h" compile="0" resource="0"
+ file="Source/Processors/SerialInput/SerialInputEditor.h"/>
+ </GROUP>
+ <GROUP id="{8E9594A3-D2B2-EAA3-9596-89923D59830A}" name="SignalGenerator">
+ <FILE id="mywzvE" name="SignalGenerator.cpp" compile="1" resource="0"
+ file="Source/Processors/SignalGenerator/SignalGenerator.cpp"/>
+ <FILE id="iaP3u1" name="SignalGenerator.h" compile="0" resource="0"
+ file="Source/Processors/SignalGenerator/SignalGenerator.h"/>
+ <FILE id="xZoFAy" name="SignalGeneratorEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SignalGenerator/SignalGeneratorEditor.cpp"/>
+ <FILE id="svgwwG" name="SignalGeneratorEditor.h" compile="0" resource="0"
+ file="Source/Processors/SignalGenerator/SignalGeneratorEditor.h"/>
+ </GROUP>
+ <GROUP id="{58E5BDC1-3523-0E4D-2402-72726098BA07}" name="SourceNode">
+ <FILE id="bcB5hN" name="SourceNode.cpp" compile="1" resource="0" file="Source/Processors/SourceNode/SourceNode.cpp"/>
+ <FILE id="Dyas33" name="SourceNode.h" compile="0" resource="0" file="Source/Processors/SourceNode/SourceNode.h"/>
+ <FILE id="KQM0Ls" name="SourceNodeEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SourceNode/SourceNodeEditor.cpp"/>
+ <FILE id="EWFh9x" name="SourceNodeEditor.h" compile="0" resource="0"
+ file="Source/Processors/SourceNode/SourceNodeEditor.h"/>
+ </GROUP>
+ <GROUP id="{B1C68941-4E97-FD8E-00E8-70B1225B3EBD}" name="SpikeDetector">
+ <FILE id="LZxTYj" name="SpikeDetector.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeDetector/SpikeDetector.cpp"/>
+ <FILE id="A4LRql" name="SpikeDetector.h" compile="0" resource="0" file="Source/Processors/SpikeDetector/SpikeDetector.h"/>
+ <FILE id="dJHC68" name="SpikeDetectorEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeDetector/SpikeDetectorEditor.cpp"/>
+ <FILE id="ek762r" name="SpikeDetectorEditor.h" compile="0" resource="0"
+ file="Source/Processors/SpikeDetector/SpikeDetectorEditor.h"/>
+ </GROUP>
+ <GROUP id="{3C98FCA3-673A-3E34-ABC6-D506EF05DDD4}" name="SpikeDisplayNode">
+ <FILE id="Ak6yJU" name="SpikeDisplayCanvas.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.cpp"/>
+ <FILE id="Ivm1WE" name="SpikeDisplayCanvas.h" compile="0" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayCanvas.h"/>
+ <FILE id="tzcDUJ" name="SpikeDisplayEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.cpp"/>
+ <FILE id="qpnGQ2" name="SpikeDisplayEditor.h" compile="0" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayEditor.h"/>
+ <FILE id="Osx5Vs" name="SpikeDisplayNode.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayNode.cpp"/>
+ <FILE id="EYFdq6" name="SpikeDisplayNode.h" compile="0" resource="0"
+ file="Source/Processors/SpikeDisplayNode/SpikeDisplayNode.h"/>
+ </GROUP>
+ <GROUP id="{B65E315B-E451-52BB-C46B-DFC8CFE52512}" name="SpikeSorter">
+ <FILE id="IDfGJU" name="SpikeSortBoxes.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSortBoxes.cpp"/>
+ <FILE id="oKqHU5" name="SpikeSortBoxes.h" compile="0" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSortBoxes.h"/>
+ <FILE id="ZvsSnb" name="SpikeSorter.cpp" compile="1" resource="0" file="Source/Processors/SpikeSorter/SpikeSorter.cpp"/>
+ <FILE id="iWFZ8N" name="SpikeSorter.h" compile="0" resource="0" file="Source/Processors/SpikeSorter/SpikeSorter.h"/>
+ <FILE id="AAjUyt" name="SpikeSorterCanvas.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSorterCanvas.cpp"/>
+ <FILE id="vSwtHQ" name="SpikeSorterCanvas.h" compile="0" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSorterCanvas.h"/>
+ <FILE id="eRXHEt" name="SpikeSorterEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSorterEditor.cpp"/>
+ <FILE id="seDqmg" name="SpikeSorterEditor.h" compile="0" resource="0"
+ file="Source/Processors/SpikeSorter/SpikeSorterEditor.h"/>
+ </GROUP>
+ <GROUP id="{393F8FA9-FA27-4F2D-8252-9AB2CAA871DA}" name="Splitter">
+ <FILE id="xbkXa2" name="Splitter.cpp" compile="1" resource="0" file="Source/Processors/Splitter/Splitter.cpp"/>
+ <FILE id="kFiAO3" name="Splitter.h" compile="0" resource="0" file="Source/Processors/Splitter/Splitter.h"/>
+ <FILE id="mY47Gn" name="SplitterEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/Splitter/SplitterEditor.cpp"/>
+ <FILE id="KyMfuL" name="SplitterEditor.h" compile="0" resource="0"
+ file="Source/Processors/Splitter/SplitterEditor.h"/>
+ </GROUP>
+ <GROUP id="W4eqkOy" name="Visualization">
+ <FILE id="ETLsfY" name="DataWindow.cpp" compile="1" resource="0" file="Source/Processors/Visualization/DataWindow.cpp"/>
+ <FILE id="qDfeYR" name="DataWindow.h" compile="0" resource="0" file="Source/Processors/Visualization/DataWindow.h"/>
+ <FILE id="tuQVXY" name="SpikeObject.cpp" compile="1" resource="0" file="Source/Processors/Visualization/SpikeObject.cpp"/>
+ <FILE id="KyhGmE" name="SpikeObject.h" compile="0" resource="0" file="Source/Processors/Visualization/SpikeObject.h"/>
+ <FILE id="MsSuwS" name="Visualizer.h" compile="0" resource="0" file="Source/Processors/Visualization/Visualizer.h"/>
+ </GROUP>
+ <GROUP id="{3FCFBFDA-848D-6B59-5F37-E3D1F43D54DF}" name="WiFiOutput">
+ <FILE id="OmOeLf" name="WiFiOutput.cpp" compile="1" resource="0" file="Source/Processors/WiFiOutput/WiFiOutput.cpp"/>
+ <FILE id="o3arNv" name="WiFiOutput.h" compile="0" resource="0" file="Source/Processors/WiFiOutput/WiFiOutput.h"/>
+ <FILE id="XSiAk6" name="WiFiOutputEditor.cpp" compile="1" resource="0"
+ file="Source/Processors/WiFiOutput/WiFiOutputEditor.cpp"/>
+ <FILE id="QdKqgJ" name="WiFiOutputEditor.h" compile="0" resource="0"
+ file="Source/Processors/WiFiOutput/WiFiOutputEditor.h"/>
+ </GROUP>
</GROUP>
<GROUP id="RNGb1yR" name="UI">
+ <FILE id="PBkkUW" name="EcubeDialogComponent.cpp" compile="1" resource="0"
+ file="Source/UI/EcubeDialogComponent.cpp"/>
+ <FILE id="MFmxar" name="EcubeDialogComponent.h" compile="0" resource="0"
+ file="Source/UI/EcubeDialogComponent.h"/>
<FILE id="gXswXJ" name="CustomArrowButton.cpp" compile="1" resource="0"
file="Source/UI/CustomArrowButton.cpp"/>
<FILE id="ECOEoc" name="CustomArrowButton.h" compile="0" resource="0"
@@ -571,10 +711,6 @@
<FILE id="bWElQSS" name="DataViewport.cpp" compile="1" resource="0"
file="Source/UI/DataViewport.cpp"/>
<FILE id="mMoQ3ls" name="DataViewport.h" compile="0" resource="0" file="Source/UI/DataViewport.h"/>
- <FILE id="rRa3X6v" name="MessageCenter.cpp" compile="1" resource="0"
- file="Source/UI/MessageCenter.cpp"/>
- <FILE id="Gwnvgdy" name="MessageCenter.h" compile="0" resource="0"
- file="Source/UI/MessageCenter.h"/>
<FILE id="we1JIPz" name="ControlPanel.cpp" compile="1" resource="0"
file="Source/UI/ControlPanel.cpp"/>
<FILE id="rCft9Ec" name="ControlPanel.h" compile="0" resource="0" file="Source/UI/ControlPanel.h"/>
@@ -599,7 +735,7 @@
<MODULE id="juce_data_structures" showAllCode="1" useLocalCopy="1"/>
<MODULE id="juce_events" showAllCode="1" useLocalCopy="1"/>
<MODULE id="juce_graphics" showAllCode="1" useLocalCopy="1"/>
- <MODULE id="juce_gui_audio" showAllCode="1"/>
+ <MODULE id="juce_gui_audio" showAllCode="1" useLocalCopy="1"/>
<MODULE id="juce_gui_basics" showAllCode="1" useLocalCopy="1"/>
<MODULE id="juce_gui_extra" showAllCode="1" useLocalCopy="1"/>
<MODULE id="juce_opengl" showAllCode="1" useLocalCopy="1"/>